RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17659
         (195 letters)



>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
           mexicana [TaxId: 5665]}
          Length = 561

 Score = 29.1 bits (64), Expect = 0.41
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 5/32 (15%)

Query: 10  RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHT 41
           R +    + M  G+      VN  E + V H 
Sbjct: 79  RGVRAFAKAMFDGQR-----VNSTENRAVLHV 105


>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 556

 Score = 28.7 bits (63), Expect = 0.51
 Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 5/32 (15%)

Query: 10  RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHT 41
           R +E   E M +GE      +N  E + V H 
Sbjct: 74  RGVEAARERMFNGEK-----INYTEGRAVLHV 100


>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux
           pump component {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 28.6 bits (62), Expect = 0.58
 Identities = 5/28 (17%), Positives = 11/28 (39%)

Query: 167 LSDAIMEATAMNPDLKVEKIEIQQQNQQ 194
           L     +A   NP+L+    +     ++
Sbjct: 3   LMQVYQQARLSNPELRKSAADRDAAFEK 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.301    0.118    0.296 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,807
Number of extensions: 22810
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 7
Length of query: 195
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 114
Effective length of database: 1,295,466
Effective search space: 147683124
Effective search space used: 147683124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 50 (23.3 bits)