BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1766
(214 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 125/209 (59%), Gaps = 15/209 (7%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN-- 62
C + + LP+TSV+I F+NE + L R+V ++L ++ L+ EIILV+D+S P +
Sbjct: 56 CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA 115
Query: 63 LHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEP 122
L G++E +V + R +REGL+R+R+ GA A KVL FLDSH E N HWLEP
Sbjct: 116 LLGKIE---------KVRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEP 166
Query: 123 LLVPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENL-PKVKTSSNPS 180
LL +AE V PIID+IN D FQY +SA ++GGF+W L FKW+ + P+ + S +
Sbjct: 167 LLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGN 226
Query: 181 YLPLQYTSSALVRGGFNWGLHFKWENLPK 209
P+ + ++ GG F +E L K
Sbjct: 227 --PVAPIKTPMIAGGLFVMDKFYFEELGK 253
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/194 (40%), Positives = 118/194 (60%), Gaps = 3/194 (1%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++ EI+LV+D SE L
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASER-DFLK 77
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+E++VK L VH+ R +R GLIRAR+ GA + G+V+ FLD+H E WLEPLL
Sbjct: 78 RPLESYVKKLKVP-VHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGFNWGLHFKWENLPKVKTSSNPSYLP 183
I TV PIID+I+ DTF+Y + S + GGFNW L+F+W +P+ +
Sbjct: 137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRT 196
Query: 184 LQYTSSALVRGGFN 197
L + + G F+
Sbjct: 197 LPVRTPTMAGGLFS 210
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/203 (39%), Positives = 122/203 (60%), Gaps = 8/203 (3%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C ++ + TLP+TS+II F+NE ++L R+V ++L+R+ L+ EI+LV+DFS+ +L
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDR-EHLK 160
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+E ++ + V + RT KREGLIR RM GA ATG V+ FLDSH E N +WL PLL
Sbjct: 161 KPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSA--LVRGGFNWGLHFKWENLPKVKTSSNPSYL 182
IA T+ P+ID+I+ D F+Y + A +RG F+W +++K +P ++PS
Sbjct: 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSD- 277
Query: 183 PLQYTSSALVRGGFNWGLHFKWE 205
+ S + G F + WE
Sbjct: 278 --PFESPVMAGGLFAVDRKWFWE 298
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLP 171
VP+ ER + +P D +N Y S N+ H K+ LP
Sbjct: 197 VPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLNFTEHLKYVMLP 243
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 124 LVPIAERTNTVTVPIIDIINADTFQYTS 151
L+P R +TV V + DI N ++FQ TS
Sbjct: 67 LIPSYIRDSTVAVVVYDITNLNSFQQTS 94
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin Subcomponent
(Ntnha) From Clostridium Botulinum Serotype D Strain 4947
Length = 1196
Score = 26.6 bits (57), Expect = 10.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 185 QYTSSALVRGGFNWGLHFKWENLPKGTHTW 214
+Y S +L G +NW + +PKG H W
Sbjct: 1163 KYFSLSLRDGDYNWMICNDNNKVPKGAHLW 1192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,649,121
Number of Sequences: 62578
Number of extensions: 267574
Number of successful extensions: 469
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 12
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)