Query psy1766
Match_columns 214
No_of_seqs 378 out of 2749
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:43:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3738|consensus 100.0 1.4E-31 3.1E-36 217.8 9.2 167 5-178 114-281 (559)
2 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 2.7E-29 5.8E-34 206.6 18.3 184 18-203 1-196 (299)
3 KOG3736|consensus 100.0 6.2E-30 1.3E-34 220.9 10.2 178 1-181 127-306 (578)
4 KOG3737|consensus 99.9 2.2E-27 4.8E-32 193.2 10.7 175 1-177 141-320 (603)
5 PRK10073 putative glycosyl tra 99.9 7.6E-25 1.7E-29 182.2 15.9 117 13-137 4-121 (328)
6 PRK10018 putative glycosyl tra 99.9 2.7E-24 5.8E-29 174.8 15.6 110 13-129 3-112 (279)
7 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 1.2E-23 2.6E-28 162.8 13.3 116 15-136 1-118 (202)
8 TIGR03469 HonB hopene-associat 99.9 2.2E-24 4.7E-29 183.2 9.1 122 12-137 37-168 (384)
9 PF00535 Glycos_transf_2: Glyc 99.9 3E-23 6.5E-28 154.7 14.0 121 18-145 1-121 (169)
10 cd02520 Glucosylceramide_synth 99.9 4.4E-23 9.5E-28 159.7 14.2 118 15-137 1-121 (196)
11 cd06427 CESA_like_2 CESA_like_ 99.9 2.5E-23 5.5E-28 166.0 13.2 117 15-135 1-118 (241)
12 PLN02726 dolichyl-phosphate be 99.9 1.1E-22 2.5E-27 162.5 14.9 122 12-136 6-127 (243)
13 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 1.7E-22 3.7E-27 174.3 16.9 121 11-136 45-165 (439)
14 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1E-22 2.2E-27 157.6 13.4 122 18-145 1-124 (201)
15 cd06437 CESA_CaSu_A2 Cellulose 99.9 1.6E-22 3.4E-27 160.3 14.7 123 15-141 1-126 (232)
16 cd06439 CESA_like_1 CESA_like_ 99.9 2.7E-22 5.8E-27 160.6 15.6 127 12-145 26-152 (251)
17 cd04196 GT_2_like_d Subfamily 99.9 2.9E-22 6.2E-27 156.1 14.4 115 18-138 1-116 (214)
18 cd06913 beta3GnTL1_like Beta 1 99.9 3.2E-22 6.9E-27 157.2 14.7 119 19-141 1-123 (219)
19 PRK10063 putative glycosyl tra 99.9 9.7E-22 2.1E-26 157.6 15.4 115 15-138 1-118 (248)
20 PRK11204 N-glycosyltransferase 99.9 6.1E-22 1.3E-26 170.1 15.1 118 12-136 51-168 (420)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 1.1E-21 2.4E-26 155.0 14.5 119 15-138 1-121 (234)
22 cd06433 GT_2_WfgS_like WfgS an 99.9 1E-21 2.2E-26 151.1 13.3 115 18-142 1-116 (202)
23 PRK14583 hmsR N-glycosyltransf 99.9 1.7E-21 3.6E-26 168.5 15.9 117 13-136 73-189 (444)
24 TIGR03472 HpnI hopanoid biosyn 99.9 2E-21 4.4E-26 164.5 15.9 120 12-136 38-160 (373)
25 cd06442 DPM1_like DPM1_like re 99.9 1.3E-21 2.9E-26 153.6 13.3 112 19-137 1-114 (224)
26 cd02525 Succinoglycan_BP_ExoA 99.9 1.6E-21 3.4E-26 155.3 12.6 119 16-140 1-119 (249)
27 cd04187 DPM1_like_bac Bacteria 99.9 3.7E-22 8E-27 152.3 8.2 111 19-136 1-114 (181)
28 PRK10714 undecaprenyl phosphat 99.9 3.3E-21 7.2E-26 160.2 14.3 116 13-134 4-122 (325)
29 cd06423 CESA_like CESA_like is 99.9 2.5E-21 5.5E-26 144.8 12.2 118 19-142 1-119 (180)
30 cd04179 DPM_DPG-synthase_like 99.9 7.2E-22 1.6E-26 150.7 9.1 116 19-139 1-117 (185)
31 cd04185 GT_2_like_b Subfamily 99.9 1.7E-21 3.8E-26 151.0 11.2 114 19-140 1-117 (202)
32 PTZ00260 dolichyl-phosphate be 99.9 4.8E-21 1E-25 159.7 14.3 115 12-129 67-189 (333)
33 cd04192 GT_2_like_e Subfamily 99.9 1E-20 2.2E-25 148.8 13.8 117 19-139 1-119 (229)
34 cd04188 DPG_synthase DPG_synth 99.9 4.6E-21 1E-25 149.8 11.7 112 19-136 1-117 (211)
35 KOG2978|consensus 99.8 7.5E-21 1.6E-25 141.1 10.1 118 14-136 2-123 (238)
36 cd02522 GT_2_like_a GT_2_like_ 99.8 2.2E-20 4.8E-25 146.4 13.3 110 17-140 1-110 (221)
37 cd06435 CESA_NdvC_like NdvC_li 99.8 2.4E-20 5.3E-25 147.9 13.5 115 18-137 1-119 (236)
38 COG1216 Predicted glycosyltran 99.8 2.6E-20 5.6E-25 153.7 13.7 122 13-143 1-126 (305)
39 PF13641 Glyco_tranf_2_3: Glyc 99.8 6.3E-21 1.4E-25 150.4 9.1 120 15-139 1-123 (228)
40 cd06420 GT2_Chondriotin_Pol_N 99.8 5.1E-20 1.1E-24 140.2 12.7 104 19-127 1-104 (182)
41 cd06434 GT2_HAS Hyaluronan syn 99.8 5.9E-20 1.3E-24 145.4 13.1 118 16-143 1-118 (235)
42 cd06438 EpsO_like EpsO protein 99.8 4.9E-20 1.1E-24 141.0 12.0 110 19-136 1-115 (183)
43 PRK13915 putative glucosyl-3-p 99.8 2.9E-20 6.2E-25 153.2 11.4 120 13-136 29-151 (306)
44 cd04186 GT_2_like_c Subfamily 99.8 6.7E-20 1.4E-24 136.8 11.7 108 19-136 1-108 (166)
45 cd02511 Beta4Glucosyltransfera 99.8 2.7E-19 5.9E-24 141.8 14.3 113 16-144 1-114 (229)
46 cd06436 GlcNAc-1-P_transferase 99.8 1.8E-19 3.8E-24 139.0 12.9 115 19-142 1-129 (191)
47 cd02526 GT2_RfbF_like RfbF is 99.8 1.7E-19 3.6E-24 143.0 12.0 106 19-136 1-112 (237)
48 COG0463 WcaA Glycosyltransfera 99.8 5.1E-19 1.1E-23 135.2 12.3 106 14-127 2-107 (291)
49 PRK11498 bcsA cellulose syntha 99.8 6.1E-19 1.3E-23 160.4 14.1 116 12-136 257-373 (852)
50 TIGR03030 CelA cellulose synth 99.8 7.5E-19 1.6E-23 159.5 14.5 120 12-136 128-262 (713)
51 PF10111 Glyco_tranf_2_2: Glyc 99.8 5.3E-19 1.1E-23 144.3 10.9 119 18-141 1-131 (281)
52 COG1215 Glycosyltransferases, 99.8 3.5E-18 7.6E-23 147.2 13.7 121 14-139 53-174 (439)
53 TIGR01556 rhamnosyltran L-rham 99.8 3.1E-18 6.7E-23 139.6 11.6 106 22-138 1-111 (281)
54 cd04190 Chitin_synth_C C-termi 99.7 3.9E-16 8.4E-21 124.9 10.0 99 19-143 1-115 (244)
55 cd04191 Glucan_BSP_ModH Glucan 99.7 2.5E-15 5.5E-20 120.8 13.6 116 17-136 1-129 (254)
56 PRK14716 bacteriophage N4 adso 99.7 2.2E-15 4.7E-20 131.1 14.1 120 12-139 63-194 (504)
57 cd00761 Glyco_tranf_GTA_type G 99.6 3.6E-14 7.8E-19 103.4 13.3 106 19-131 1-106 (156)
58 KOG2977|consensus 99.6 1.9E-14 4.2E-19 113.6 11.4 109 16-127 68-182 (323)
59 PRK11234 nfrB bacteriophage N4 99.6 3.3E-14 7.2E-19 128.5 14.0 119 12-138 60-190 (727)
60 PRK05454 glucosyltransferase M 99.5 2.8E-13 6E-18 122.0 14.5 123 12-137 121-255 (691)
61 PRK15489 nfrB bacteriophage N4 99.4 2.8E-12 6.1E-17 115.1 14.3 121 12-140 68-200 (703)
62 cd02514 GT13_GLCNAC-TI GT13_GL 99.3 2.5E-11 5.5E-16 100.4 12.3 115 17-139 2-137 (334)
63 KOG2547|consensus 98.9 2.4E-08 5.1E-13 82.1 13.0 121 11-136 81-204 (431)
64 PF13712 Glyco_tranf_2_5: Glyc 98.8 3.9E-08 8.5E-13 77.3 9.1 93 17-141 1-94 (217)
65 PF13704 Glyco_tranf_2_4: Glyc 98.3 5E-06 1.1E-10 56.7 8.4 82 24-118 1-87 (97)
66 PF03452 Anp1: Anp1; InterPro 98.2 4.2E-05 9.2E-10 61.5 12.7 125 12-142 22-179 (269)
67 PF03071 GNT-I: GNT-I family; 98.1 1.8E-05 4E-10 67.6 8.0 120 13-140 91-232 (434)
68 COG4092 Predicted glycosyltran 97.9 9.6E-05 2.1E-09 58.7 9.2 121 14-140 1-138 (346)
69 KOG3588|consensus 97.9 0.00031 6.7E-09 58.3 12.1 124 11-141 225-351 (494)
70 PF03142 Chitin_synth_2: Chiti 97.8 0.00094 2E-08 58.9 14.3 125 16-140 26-240 (527)
71 PF13506 Glyco_transf_21: Glyc 97.7 0.00016 3.4E-09 55.0 7.2 57 80-136 5-65 (175)
72 PF09488 Osmo_MPGsynth: Mannos 97.6 0.0011 2.4E-08 55.0 10.5 104 15-126 50-182 (381)
73 PF06306 CgtA: Beta-1,4-N-acet 97.4 0.0013 2.8E-08 53.7 8.8 118 16-142 88-215 (347)
74 COG2943 MdoH Membrane glycosyl 97.4 0.0019 4.1E-08 56.3 10.1 121 16-139 145-277 (736)
75 PRK14503 mannosyl-3-phosphogly 97.3 0.003 6.5E-08 52.5 10.5 104 15-127 51-184 (393)
76 TIGR02460 osmo_MPGsynth mannos 97.3 0.0032 6.8E-08 52.1 10.6 104 15-127 50-183 (381)
77 PF05679 CHGN: Chondroitin N-a 97.3 0.0052 1.1E-07 54.4 12.7 125 12-140 244-378 (499)
78 PF11316 Rhamno_transf: Putati 97.3 0.0028 6.1E-08 50.4 9.7 89 33-128 46-140 (234)
79 cd00218 GlcAT-I Beta1,3-glucur 97.1 0.0036 7.8E-08 49.0 8.2 99 15-124 1-117 (223)
80 PLN02458 transferase, transfer 96.9 0.0059 1.3E-07 50.2 7.8 100 14-124 111-224 (346)
81 PF13733 Glyco_transf_7N: N-te 96.8 0.0073 1.6E-07 43.5 7.2 73 16-118 48-127 (136)
82 PF09258 Glyco_transf_64: Glyc 96.8 0.0035 7.6E-08 50.3 6.0 108 17-136 1-109 (247)
83 PRK14502 bifunctional mannosyl 96.7 0.019 4.2E-07 52.1 10.5 104 15-127 55-188 (694)
84 PF03214 RGP: Reversibly glyco 96.6 0.0054 1.2E-07 50.5 5.9 107 16-137 9-126 (348)
85 cd04182 GT_2_like_f GT_2_like_ 96.5 0.031 6.7E-07 42.1 9.5 101 25-139 24-128 (186)
86 KOG1476|consensus 96.5 0.039 8.6E-07 45.1 9.9 104 14-127 86-205 (330)
87 PLN02893 Cellulose synthase-li 96.4 0.067 1.4E-06 49.1 11.9 47 12-58 98-147 (734)
88 PRK00317 mobA molybdopterin-gu 96.4 0.083 1.8E-06 40.4 11.1 90 29-136 31-123 (193)
89 PF12804 NTP_transf_3: MobA-li 96.2 0.072 1.6E-06 39.3 9.8 100 21-137 19-121 (160)
90 TIGR03310 matur_ygfJ molybdenu 96.2 0.11 2.4E-06 39.3 10.9 98 29-138 26-126 (188)
91 cd00899 b4GalT Beta-4-Galactos 96.1 0.028 6E-07 44.1 7.3 76 16-121 3-85 (219)
92 PF04666 Glyco_transf_54: N-Ac 96.1 0.044 9.5E-07 45.1 8.7 115 14-130 51-197 (297)
93 KOG1413|consensus 96.1 0.069 1.5E-06 44.5 9.4 122 12-136 64-204 (411)
94 PF13632 Glyco_trans_2_3: Glyc 96.0 0.0045 9.8E-08 47.2 2.5 34 105-138 1-34 (193)
95 TIGR03202 pucB xanthine dehydr 96.0 0.18 3.9E-06 38.4 11.1 103 25-137 24-131 (190)
96 PF11735 CAP59_mtransfer: Cryp 95.9 0.23 4.9E-06 39.7 11.7 113 19-136 4-145 (241)
97 KOG3916|consensus 95.8 0.057 1.2E-06 44.7 7.7 73 16-118 152-231 (372)
98 PF11397 GlcNAc: Glycosyltrans 95.7 0.42 9E-06 40.3 13.0 117 17-136 2-152 (343)
99 cd02540 GT2_GlmU_N_bac N-termi 95.7 0.25 5.4E-06 38.6 11.2 98 20-132 20-120 (229)
100 cd02503 MobA MobA catalyzes th 95.4 0.17 3.6E-06 38.1 9.0 93 25-137 24-118 (181)
101 COG1209 RfbA dTDP-glucose pyro 95.4 0.47 1E-05 38.4 11.5 99 20-129 25-124 (286)
102 PLN02917 CMP-KDO synthetase 95.4 0.34 7.4E-06 39.9 11.3 109 15-138 46-172 (293)
103 PRK00155 ispD 2-C-methyl-D-ery 95.3 0.54 1.2E-05 36.9 11.8 99 29-138 32-133 (227)
104 cd04181 NTP_transferase NTP_tr 95.2 0.33 7.2E-06 37.4 10.2 99 20-129 23-121 (217)
105 PF01697 Glyco_transf_92: Glyc 94.8 0.35 7.6E-06 39.2 9.6 105 17-130 3-135 (285)
106 cd06915 NTP_transferase_WcbM_l 94.7 0.84 1.8E-05 35.3 11.3 100 20-130 23-122 (223)
107 COG1213 Predicted sugar nucleo 94.6 0.11 2.3E-06 41.1 5.9 88 29-127 32-121 (239)
108 PRK13368 3-deoxy-manno-octulos 94.6 0.92 2E-05 35.7 11.5 90 29-131 28-118 (238)
109 PF00483 NTP_transferase: Nucl 94.5 0.5 1.1E-05 37.4 9.8 99 20-129 24-128 (248)
110 cd06422 NTP_transferase_like_1 94.5 0.87 1.9E-05 35.4 11.0 101 13-127 19-120 (221)
111 cd02518 GT2_SpsF SpsF is a gly 94.5 0.76 1.6E-05 36.2 10.7 96 25-132 22-118 (233)
112 PRK05450 3-deoxy-manno-octulos 94.5 0.99 2.1E-05 35.7 11.4 89 29-130 28-119 (245)
113 cd06431 GT8_LARGE_C LARGE cata 94.3 0.94 2E-05 37.1 11.1 104 16-126 2-120 (280)
114 cd00505 Glyco_transf_8 Members 94.3 0.92 2E-05 36.1 10.9 115 18-138 2-130 (246)
115 cd02513 CMP-NeuAc_Synthase CMP 94.3 0.73 1.6E-05 35.8 10.1 100 29-140 27-136 (223)
116 TIGR02665 molyb_mobA molybdopt 94.2 0.76 1.6E-05 34.7 9.8 94 25-135 25-121 (186)
117 cd06425 M1P_guanylylT_B_like_N 94.2 0.64 1.4E-05 36.6 9.7 99 20-130 25-127 (233)
118 cd06428 M1P_guanylylT_A_like_N 94.1 0.92 2E-05 36.3 10.7 107 13-130 20-129 (257)
119 PLN03180 reversibly glycosylat 94.1 0.088 1.9E-06 43.6 4.6 40 89-128 80-126 (346)
120 PRK09382 ispDF bifunctional 2- 94.1 1.7 3.7E-05 37.2 12.6 90 29-130 34-124 (378)
121 PRK15480 glucose-1-phosphate t 94.1 1.3 2.8E-05 36.5 11.5 97 20-129 28-128 (292)
122 TIGR03552 F420_cofC 2-phospho- 94.0 0.62 1.3E-05 35.6 9.1 59 78-138 65-126 (195)
123 cd02516 CDP-ME_synthetase CDP- 94.0 0.64 1.4E-05 36.0 9.2 107 20-138 22-133 (218)
124 PRK14353 glmU bifunctional N-a 93.9 1.2 2.6E-05 38.7 11.6 101 20-133 27-130 (446)
125 PRK13385 2-C-methyl-D-erythrit 93.8 1.7 3.6E-05 34.2 11.3 105 25-140 28-137 (230)
126 PRK02726 molybdopterin-guanine 93.6 0.85 1.8E-05 35.2 9.1 85 29-129 34-120 (200)
127 cd04189 G1P_TT_long G1P_TT_lon 93.4 1.8 4E-05 33.9 11.0 101 13-127 20-121 (236)
128 PF13896 Glyco_transf_49: Glyc 93.1 0.19 4.1E-06 41.9 5.1 58 87-144 112-173 (317)
129 cd02509 GDP-M1P_Guanylyltransf 93.0 3.7 8E-05 33.4 12.4 92 13-116 21-116 (274)
130 PRK14355 glmU bifunctional N-a 92.8 1.3 2.9E-05 38.7 10.2 97 20-130 25-124 (459)
131 TIGR00453 ispD 2-C-methyl-D-er 92.7 3.3 7.1E-05 32.1 11.4 103 25-140 25-130 (217)
132 COG2068 Uncharacterized MobA-r 92.2 3.7 8.1E-05 31.7 10.6 104 29-145 32-139 (199)
133 PRK14360 glmU bifunctional N-a 92.2 2.5 5.5E-05 36.7 11.2 99 20-132 23-124 (450)
134 cd04183 GT2_BcE_like GT2_BcbE_ 92.2 3.3 7.2E-05 32.3 11.0 106 13-130 18-125 (231)
135 PF03360 Glyco_transf_43: Glyc 92.1 0.67 1.5E-05 36.1 6.6 69 48-123 11-98 (207)
136 PLN02189 cellulose synthase 92.0 0.59 1.3E-05 44.5 7.2 98 29-129 439-560 (1040)
137 TIGR01207 rmlA glucose-1-phosp 91.7 2 4.4E-05 35.2 9.5 101 13-128 19-123 (286)
138 TIGR03584 PseF pseudaminic aci 91.7 2.8 6E-05 33.0 9.9 101 25-138 22-131 (222)
139 COG1211 IspD 4-diphosphocytidy 91.7 4.9 0.00011 31.9 11.1 104 29-142 33-141 (230)
140 cd04194 GT8_A4GalT_like A4GalT 91.6 4.3 9.3E-05 32.2 11.1 113 19-137 3-129 (248)
141 COG1208 GCD1 Nucleoside-diphos 91.5 3.8 8.3E-05 34.8 11.1 98 20-130 26-125 (358)
142 PF01501 Glyco_transf_8: Glyco 91.2 1.3 2.9E-05 34.6 7.7 111 21-136 3-131 (250)
143 PRK14352 glmU bifunctional N-a 91.1 4.8 0.0001 35.5 11.8 104 14-132 22-129 (482)
144 cd02517 CMP-KDO-Synthetase CMP 91.0 5.1 0.00011 31.5 10.9 94 20-130 20-118 (239)
145 TIGR01173 glmU UDP-N-acetylglu 91.0 2.6 5.7E-05 36.5 10.0 96 20-130 22-119 (451)
146 cd02508 ADP_Glucose_PP ADP-glu 90.9 2.9 6.3E-05 32.0 9.2 109 13-132 18-139 (200)
147 cd06426 NTP_transferase_like_2 90.6 4.3 9.2E-05 31.4 10.0 98 20-131 23-122 (220)
148 cd02538 G1P_TT_short G1P_TT_sh 90.5 4.8 0.0001 31.7 10.4 102 13-128 20-124 (240)
149 PRK14358 glmU bifunctional N-a 90.3 4 8.6E-05 36.1 10.5 98 20-132 29-129 (481)
150 cd02524 G1P_cytidylyltransfera 90.3 4.4 9.5E-05 32.3 10.0 104 13-129 18-143 (253)
151 PRK14357 glmU bifunctional N-a 90.2 4.5 9.8E-05 35.1 10.7 99 13-130 17-117 (448)
152 PRK14489 putative bifunctional 90.2 4.4 9.5E-05 34.5 10.3 50 88-137 78-128 (366)
153 PRK14356 glmU bifunctional N-a 89.5 2.6 5.5E-05 36.8 8.6 94 20-128 27-124 (456)
154 TIGR00454 conserved hypothetic 89.3 7.9 0.00017 29.4 10.7 94 20-129 21-116 (183)
155 KOG2571|consensus 89.3 4.1 8.9E-05 38.4 9.9 35 104-138 442-477 (862)
156 PF09837 DUF2064: Uncharacteri 89.1 4.8 0.0001 28.5 8.3 82 48-138 11-95 (122)
157 PLN02190 cellulose synthase-li 89.0 1.2 2.7E-05 41.0 6.4 55 13-69 91-148 (756)
158 PF05060 MGAT2: N-acetylglucos 88.9 6.1 0.00013 33.5 9.9 51 15-69 31-81 (356)
159 PRK15171 lipopolysaccharide 1, 88.8 11 0.00023 31.8 11.5 107 15-126 24-143 (334)
160 PLN02638 cellulose synthase A 88.6 1.3 2.8E-05 42.5 6.4 98 29-129 457-578 (1079)
161 COG0746 MobA Molybdopterin-gua 88.6 4.3 9.4E-05 31.2 8.3 58 78-135 61-120 (192)
162 KOG1022|consensus 88.5 2.5 5.4E-05 37.5 7.5 115 11-136 439-553 (691)
163 PF02348 CTP_transf_3: Cytidyl 88.5 9.7 0.00021 29.3 10.9 91 29-132 25-119 (217)
164 TIGR01105 galF UTP-glucose-1-p 88.5 8.1 0.00018 31.9 10.5 106 12-128 22-155 (297)
165 cd02523 PC_cytidylyltransferas 88.4 3.8 8.2E-05 32.0 8.2 95 13-124 18-114 (229)
166 PRK14354 glmU bifunctional N-a 87.9 9.4 0.0002 33.3 11.1 95 20-130 24-121 (458)
167 cd02541 UGPase_prokaryotic Pro 87.9 7.4 0.00016 31.2 9.8 107 13-129 20-147 (267)
168 cd04198 eIF-2B_gamma_N The N-t 87.5 12 0.00025 29.1 12.1 104 20-136 25-133 (214)
169 PLN02728 2-C-methyl-D-erythrit 87.2 13 0.00028 29.9 10.7 119 13-142 21-159 (252)
170 TIGR00466 kdsB 3-deoxy-D-manno 87.1 13 0.00029 29.4 10.9 86 29-130 25-116 (238)
171 PRK00576 molybdopterin-guanine 87.1 9.2 0.0002 28.6 9.4 89 29-136 16-109 (178)
172 TIGR01099 galU UTP-glucose-1-p 86.7 14 0.0003 29.4 10.7 108 13-130 20-148 (260)
173 PRK09451 glmU bifunctional N-a 86.1 6.4 0.00014 34.3 9.1 96 20-130 27-124 (456)
174 TIGR02623 G1P_cyt_trans glucos 85.8 16 0.00035 29.1 11.5 112 13-135 19-150 (254)
175 COG1207 GlmU N-acetylglucosami 85.7 12 0.00027 32.4 10.0 103 10-128 16-122 (460)
176 cd06432 GT8_HUGT1_C_like The C 85.0 17 0.00036 29.1 10.3 103 28-137 13-129 (248)
177 PLN02195 cellulose synthase A 83.8 1.6 3.5E-05 41.5 4.4 53 77-129 419-481 (977)
178 TIGR01208 rmlA_long glucose-1- 83.3 20 0.00044 30.0 10.6 104 13-129 19-123 (353)
179 PF02485 Branch: Core-2/I-Bran 82.8 11 0.00025 29.7 8.5 102 17-126 1-114 (244)
180 COG1210 GalU UDP-glucose pyrop 82.7 7.6 0.00017 31.7 7.2 57 76-132 96-154 (291)
181 COG1212 KdsB CMP-2-keto-3-deox 79.4 15 0.00033 29.1 7.7 115 15-142 2-132 (247)
182 PF07507 WavE: WavE lipopolysa 78.6 7.8 0.00017 32.3 6.3 93 26-127 18-120 (311)
183 PRK14490 putative bifunctional 78.5 28 0.0006 29.6 9.9 82 29-127 201-284 (369)
184 KOG1111|consensus 77.6 10 0.00022 32.2 6.6 60 17-83 196-258 (426)
185 KOG3738|consensus 77.3 0.87 1.9E-05 38.9 0.4 21 189-209 255-275 (559)
186 PF11051 Mannosyl_trans3: Mann 76.6 10 0.00022 30.8 6.4 95 18-118 3-106 (271)
187 PF01762 Galactosyl_T: Galacto 75.8 16 0.00034 27.8 7.1 93 30-127 5-105 (195)
188 TIGR01479 GMP_PMI mannose-1-ph 73.6 65 0.0014 28.5 11.4 101 14-126 22-128 (468)
189 KOG2733|consensus 73.1 59 0.0013 27.8 9.9 100 13-127 30-129 (423)
190 KOG3736|consensus 72.9 1.3 2.8E-05 39.8 0.4 24 189-212 277-300 (578)
191 TIGR02091 glgC glucose-1-phosp 72.6 23 0.00049 29.8 7.8 99 20-129 23-136 (361)
192 PRK10122 GalU regulator GalF; 72.2 54 0.0012 27.0 10.3 107 12-129 22-156 (297)
193 PF01128 IspD: 2-C-methyl-D-er 72.2 46 0.001 26.2 10.1 101 29-142 29-134 (221)
194 KOG2264|consensus 72.0 5 0.00011 35.9 3.6 108 16-135 650-757 (907)
195 PRK13389 UTP--glucose-1-phosph 70.4 60 0.0013 26.8 10.3 107 13-129 28-161 (302)
196 PRK05293 glgC glucose-1-phosph 70.0 33 0.00072 29.0 8.3 102 12-127 22-140 (380)
197 cd06430 GT8_like_2 GT8_like_2 69.8 64 0.0014 26.8 12.1 103 17-127 3-120 (304)
198 COG2266 GTP:adenosylcobinamide 69.4 47 0.001 25.2 10.2 83 30-128 29-112 (177)
199 PRK14359 glmU bifunctional N-a 69.0 60 0.0013 27.9 9.8 94 13-124 19-115 (430)
200 PLN02248 cellulose synthase-li 68.3 10 0.00022 36.9 5.0 53 77-129 585-647 (1135)
201 PRK00844 glgC glucose-1-phosph 65.5 50 0.0011 28.4 8.6 105 13-130 25-143 (407)
202 PLN02195 cellulose synthase A 65.0 17 0.00037 34.9 5.8 56 12-69 249-307 (977)
203 cd02507 eIF-2B_gamma_N_like Th 64.4 64 0.0014 24.9 8.8 101 13-125 20-124 (216)
204 PLN02915 cellulose synthase A 63.9 22 0.00048 34.4 6.4 55 13-69 285-342 (1044)
205 PLN02436 cellulose synthase A 63.9 20 0.00043 34.8 6.0 55 12-68 362-419 (1094)
206 PHA01631 hypothetical protein 63.9 11 0.00023 28.3 3.5 64 48-118 18-87 (176)
207 PF04724 Glyco_transf_17: Glyc 63.2 95 0.0021 26.5 9.9 113 3-124 65-200 (356)
208 cd02537 GT8_Glycogenin Glycoge 62.8 26 0.00056 27.8 5.9 87 28-125 13-111 (240)
209 PLN03153 hypothetical protein; 62.7 18 0.00039 32.3 5.2 50 87-136 187-244 (537)
210 PLN02638 cellulose synthase A 62.2 20 0.00044 34.8 5.8 56 12-69 346-404 (1079)
211 KOG0799|consensus 61.6 55 0.0012 28.7 8.1 103 16-127 104-218 (439)
212 PLN02400 cellulose synthase 61.5 21 0.00045 34.7 5.8 55 12-68 353-410 (1085)
213 PLN02189 cellulose synthase 61.4 22 0.00047 34.5 5.8 55 13-69 329-386 (1040)
214 PLN02248 cellulose synthase-li 59.9 25 0.00055 34.3 6.0 56 12-69 364-422 (1135)
215 PRK00725 glgC glucose-1-phosph 59.8 1.1E+02 0.0023 26.7 9.6 100 20-130 40-155 (425)
216 PLN02436 cellulose synthase A 59.6 15 0.00033 35.6 4.5 52 77-128 532-593 (1094)
217 COG1861 SpsF Spore coat polysa 59.2 89 0.0019 24.8 11.2 92 29-131 29-122 (241)
218 PLN02190 cellulose synthase-li 58.4 19 0.00041 33.7 4.8 52 77-128 252-313 (756)
219 KOG4179|consensus 58.3 12 0.00026 32.4 3.2 109 15-126 3-134 (568)
220 PRK00560 molybdopterin-guanine 58.3 80 0.0017 24.0 9.3 78 25-124 32-113 (196)
221 PF01755 Glyco_transf_25: Glyc 56.1 86 0.0019 23.7 9.2 95 29-129 14-112 (200)
222 PF01793 Glyco_transf_15: Glyc 56.1 36 0.00079 28.6 5.8 66 13-83 53-118 (328)
223 PF05045 RgpF: Rhamnan synthes 55.3 66 0.0014 28.8 7.6 77 50-135 1-84 (498)
224 PF10686 DUF2493: Protein of u 53.5 56 0.0012 20.7 6.2 52 24-86 14-65 (71)
225 cd04197 eIF-2B_epsilon_N The N 52.9 1E+02 0.0022 23.7 10.0 106 12-129 19-129 (217)
226 PF03552 Cellulose_synt: Cellu 51.4 20 0.00042 33.4 3.7 52 77-128 166-227 (720)
227 PF00665 rve: Integrase core d 50.7 68 0.0015 21.6 5.8 71 13-90 33-104 (120)
228 cd02515 Glyco_transf_6 Glycosy 48.9 1.3E+02 0.0029 24.5 7.7 107 10-124 29-145 (271)
229 PLN02400 cellulose synthase 48.7 26 0.00056 34.2 4.2 52 77-128 523-584 (1085)
230 KOG0780|consensus 48.5 1.5E+02 0.0032 25.9 8.2 90 21-113 157-254 (483)
231 PF15224 SCRG1: Scrapie-respon 48.2 13 0.00029 23.2 1.5 11 15-25 67-77 (78)
232 PLN02241 glucose-1-phosphate a 46.9 1.4E+02 0.0031 25.9 8.3 99 20-129 28-147 (436)
233 PLN02915 cellulose synthase A 46.8 31 0.00067 33.5 4.4 51 77-127 454-514 (1044)
234 PF05212 DUF707: Protein of un 44.1 22 0.00047 29.2 2.6 41 101-141 115-155 (294)
235 PRK02862 glgC glucose-1-phosph 43.9 1.4E+02 0.003 26.0 7.8 105 13-130 23-142 (429)
236 COG1442 RfaJ Lipopolysaccharid 41.5 2.1E+02 0.0046 24.0 11.3 116 17-137 3-131 (325)
237 PRK09287 6-phosphogluconate de 41.3 1.5E+02 0.0032 26.3 7.5 92 19-128 57-148 (459)
238 PLN00176 galactinol synthase 41.1 81 0.0018 26.6 5.6 28 97-125 107-134 (333)
239 PF02875 Mur_ligase_C: Mur lig 40.9 97 0.0021 20.1 5.1 7 103-109 72-78 (91)
240 TIGR02092 glgD glucose-1-phosp 40.5 71 0.0015 26.9 5.4 103 20-133 27-144 (369)
241 KOG3765|consensus 40.4 40 0.00086 29.1 3.8 56 89-144 178-238 (386)
242 TIGR00334 5S_RNA_mat_M5 ribonu 40.2 83 0.0018 23.9 5.0 12 102-113 47-58 (174)
243 COG3967 DltE Short-chain dehyd 38.6 55 0.0012 25.8 3.9 61 18-93 31-91 (245)
244 KOG1467|consensus 38.0 3E+02 0.0065 24.7 10.0 84 20-121 362-445 (556)
245 PRK15460 cpsB mannose-1-phosph 37.7 2.7E+02 0.006 24.8 8.7 108 20-137 31-148 (478)
246 PF11181 YflT: Heat induced st 36.5 75 0.0016 21.5 4.1 33 20-55 2-34 (103)
247 PF03028 Dynein_heavy: Dynein 36.4 2.2E+02 0.0047 26.6 8.3 86 35-129 106-195 (707)
248 KOG2977|consensus 36.3 4.1 8.9E-05 33.3 -2.6 96 29-126 21-121 (323)
249 cd01461 vWA_interalpha_trypsin 35.2 1.7E+02 0.0037 21.0 7.8 23 48-72 101-123 (171)
250 KOG1971|consensus 34.6 80 0.0017 27.4 4.6 64 61-129 138-202 (415)
251 KOG2791|consensus 33.8 3E+02 0.0066 23.5 7.9 29 16-45 118-146 (455)
252 PF00455 DeoRC: DeoR C termina 33.3 1.2E+02 0.0025 22.4 5.0 45 32-85 6-50 (161)
253 PRK06683 hypothetical protein; 33.0 39 0.00085 22.1 2.1 44 32-83 17-60 (82)
254 COG4750 LicC CTP:phosphocholin 32.9 2.4E+02 0.0052 22.1 6.9 99 1-120 10-110 (231)
255 COG2452 Predicted site-specifi 32.3 2.1E+02 0.0046 22.0 6.1 50 15-71 113-163 (193)
256 COG3510 CmcI Cephalosporin hyd 32.3 2.5E+02 0.0054 22.0 7.3 58 48-115 98-156 (237)
257 COG0836 {ManC} Mannose-1-phosp 32.3 3.1E+02 0.0067 23.1 9.1 85 25-117 32-120 (333)
258 PF02434 Fringe: Fringe-like; 31.7 28 0.00062 27.9 1.5 35 102-136 86-120 (252)
259 PF01983 CofC: Guanylyl transf 31.5 59 0.0013 25.6 3.2 60 77-138 63-123 (217)
260 PRK14500 putative bifunctional 30.1 1.4E+02 0.0031 25.2 5.5 52 78-129 219-272 (346)
261 PTZ00142 6-phosphogluconate de 29.7 2.5E+02 0.0054 24.9 7.1 90 20-127 70-159 (470)
262 PF04295 GD_AH_C: D-galactarat 28.8 2.7E+02 0.0059 24.2 6.9 68 29-101 70-137 (396)
263 PRK08485 DNA polymerase III su 28.7 2.5E+02 0.0054 22.0 6.1 78 49-136 6-87 (206)
264 COG4122 Predicted O-methyltran 28.4 50 0.0011 26.0 2.3 77 48-134 85-163 (219)
265 KOG1460|consensus 28.3 2.9E+02 0.0063 23.2 6.7 97 30-133 37-136 (407)
266 PF05637 Glyco_transf_34: gala 27.9 1.2E+02 0.0027 24.1 4.5 26 91-116 64-90 (239)
267 COG2873 MET17 O-acetylhomoseri 27.6 86 0.0019 27.0 3.6 104 47-163 126-231 (426)
268 PRK13602 putative ribosomal pr 27.4 68 0.0015 20.9 2.5 45 31-83 16-60 (82)
269 PLN02350 phosphogluconate dehy 27.3 2.7E+02 0.0058 25.0 6.9 94 17-128 73-166 (493)
270 PRK04017 hypothetical protein; 27.3 2.4E+02 0.0052 20.3 7.3 71 28-113 6-76 (132)
271 PF00682 HMGL-like: HMGL-like 27.1 3E+02 0.0066 21.4 7.4 74 28-106 136-210 (237)
272 COG1083 NeuA CMP-N-acetylneura 26.9 3.2E+02 0.007 21.6 9.4 108 14-134 1-129 (228)
273 PF14258 DUF4350: Domain of un 26.8 1.6E+02 0.0034 18.1 4.1 35 102-136 34-69 (70)
274 PF04028 DUF374: Domain of unk 26.8 1.8E+02 0.0038 18.6 4.9 59 48-113 10-68 (74)
275 PF09419 PGP_phosphatase: Mito 26.6 2.8E+02 0.0061 20.8 7.5 50 28-84 61-112 (168)
276 TIGR00873 gnd 6-phosphoglucona 26.4 3.5E+02 0.0077 24.0 7.5 68 19-95 66-133 (467)
277 PRK06714 S-adenosylhomocystein 25.4 38 0.00083 26.9 1.2 85 14-108 1-93 (236)
278 PRK06455 riboflavin synthase; 25.2 1.6E+02 0.0036 21.8 4.4 105 14-125 1-115 (155)
279 PLN03183 acetylglucosaminyltra 25.0 4.7E+02 0.01 22.9 11.3 96 13-115 76-186 (421)
280 PF04123 DUF373: Domain of unk 24.9 1E+02 0.0022 26.2 3.6 50 16-69 66-120 (344)
281 COG0773 MurC UDP-N-acetylmuram 24.6 3E+02 0.0064 24.4 6.5 61 50-110 325-388 (459)
282 COG1358 RPL8A Ribosomal protei 24.5 1.9E+02 0.0042 20.3 4.5 81 30-126 31-111 (116)
283 PF07879 PHB_acc_N: PHB/PHA ac 24.4 1.6E+02 0.0035 18.3 3.5 24 48-72 33-56 (64)
284 PF14097 SpoVAE: Stage V sporu 24.4 3.2E+02 0.0069 20.7 10.0 87 50-142 2-92 (180)
285 PLN02718 Probable galacturonos 23.7 5.8E+02 0.013 23.5 8.3 104 17-126 314-440 (603)
286 PRK13601 putative L7Ae-like ri 23.1 1E+02 0.0022 20.2 2.7 36 32-74 14-49 (82)
287 PF07492 Trehalase_Ca-bi: Neut 22.7 1.1E+02 0.0023 16.0 2.1 23 36-58 2-24 (30)
288 PF03552 Cellulose_synt: Cellu 22.4 1.3E+02 0.0029 28.2 4.1 49 19-69 3-54 (720)
289 cd07941 DRE_TIM_LeuA3 Desulfob 22.4 4.2E+02 0.0091 21.4 7.9 11 87-97 205-215 (273)
290 PF00448 SRP54: SRP54-type pro 22.3 3.4E+02 0.0073 20.8 5.9 89 30-126 71-165 (196)
291 COG0300 DltE Short-chain dehyd 22.3 3.4E+02 0.0075 22.1 6.1 65 17-89 31-95 (265)
292 cd07943 DRE_TIM_HOA 4-hydroxy- 21.3 4.3E+02 0.0093 21.1 8.5 70 29-104 141-212 (263)
293 PF13419 HAD_2: Haloacid dehal 21.3 1.8E+02 0.004 20.6 4.2 24 30-58 81-104 (176)
294 PF13407 Peripla_BP_4: Peripla 21.2 3.9E+02 0.0084 20.6 7.8 87 17-112 1-89 (257)
295 PF01644 Chitin_synth_1: Chiti 21.2 1.3E+02 0.0029 22.5 3.3 43 85-127 117-163 (163)
296 PRK08195 4-hyroxy-2-oxovalerat 21.1 5.1E+02 0.011 21.8 8.0 71 29-104 144-216 (337)
297 PF09886 DUF2113: Uncharacteri 20.8 4E+02 0.0087 20.5 8.9 28 101-128 156-183 (188)
298 KOG1478|consensus 20.7 1.6E+02 0.0036 24.1 3.9 67 12-84 28-95 (341)
299 KOG3917|consensus 20.5 1.6E+02 0.0034 23.5 3.6 71 14-115 73-149 (310)
No 1
>KOG3738|consensus
Probab=99.97 E-value=1.4e-31 Score=217.81 Aligned_cols=167 Identities=49% Similarity=0.813 Sum_probs=153.2
Q ss_pred ccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc
Q psy1766 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT 84 (214)
Q Consensus 5 ~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~ 84 (214)
|....|...||..||||..+||+...|.+++.|++++++.+...|||+|||+|.| .+....+.++ ++++++++
T Consensus 114 C~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~D-ped~~~L~ri------~kvr~LRN 186 (559)
T KOG3738|consen 114 CRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQD-PEDGKLLKRI------PKVRVLRN 186 (559)
T ss_pred cccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCC-hHHHHHHhhh------heeeeecc
Confidence 8888999999999999999999989999999999999999988999999999996 3344444443 79999999
Q ss_pred CCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeeeeEecc
Q psy1766 85 SKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGFNWGL 163 (214)
Q Consensus 85 ~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~~~~~~ 163 (214)
+++.|.-..|+.|+..|++.++.|||+.+.+..+||+.|++.+.++...||+|++|+|+-++|.|.+ +...+|||+|++
T Consensus 187 ~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsL 266 (559)
T KOG3738|consen 187 NEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSL 266 (559)
T ss_pred cchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999985 567899999999
Q ss_pred cceeecCCccccCCC
Q psy1766 164 HFKWENLPKVKTSSN 178 (214)
Q Consensus 164 ~~~~~~~~~~~~~~~ 178 (214)
+|+|..++.+....+
T Consensus 267 hF~We~~~~eqr~sr 281 (559)
T KOG3738|consen 267 HFKWEQMQLEQRESR 281 (559)
T ss_pred EEEehhcCHHHHhhc
Confidence 999999998776655
No 2
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.97 E-value=2.7e-29 Score=206.62 Aligned_cols=184 Identities=48% Similarity=0.723 Sum_probs=147.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
|||||+||+..+.|.+||+|+++|+++...+|||||||||+ |.+.+.+.+.......+++++++.+.|.|.+.|+|.|
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~--d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g 78 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSD--KPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAG 78 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCC--chHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHH
Confidence 79999999977899999999999998764469999999999 8888887663222214689999999999999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeecCCc-eeeeeEecccceeecCCcccc-
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSAL-VRGGFNWGLHFKWENLPKVKT- 175 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~- 175 (214)
+++|+|+||+|||+|+.+.++||+.+++.+.+++..+++|.+..++..++.+.+... ..+++.|.+.+.|...+....
T Consensus 79 ~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (299)
T cd02510 79 ARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERR 158 (299)
T ss_pred HHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhh
Confidence 999999999999999999999999999999988888999999988888888776555 678889988888865543321
Q ss_pred ---CCCCCCCCCCCCccch-------hccccccccccc
Q psy1766 176 ---SSNPSYLPLQYTSSAL-------VRGGFNWGLHFK 203 (214)
Q Consensus 176 ---~~~~~~~~~~~~~~~~-------~~ggf~~~~~~~ 203 (214)
.......+...+.|++ .+||||..+..+
T Consensus 159 ~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~ 196 (299)
T cd02510 159 RESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIW 196 (299)
T ss_pred hcCCCCCccCccccceeeEEEHHHHHHhCCCCCccccc
Confidence 0011112444444443 899999988653
No 3
>KOG3736|consensus
Probab=99.96 E-value=6.2e-30 Score=220.92 Aligned_cols=178 Identities=51% Similarity=0.844 Sum_probs=163.0
Q ss_pred CCccccC-CcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcE
Q psy1766 1 MSIICAN-QTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRV 79 (214)
Q Consensus 1 ~~~~~~~-~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v 79 (214)
+...|++ ..+.+++|..||||+.+||.+..|.+++.|+++.+++...-|||+|||+|+. +.....++++.+++ ..+
T Consensus 127 r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~-~~l~~~Ld~y~k~~--~~v 203 (578)
T KOG3736|consen 127 RHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR-DHLKDKLEEYVKRF--SKV 203 (578)
T ss_pred hchhhhhccccccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcch-hhhhhhhHHHHhhh--cce
Confidence 3567877 5556889999999999999999999999999999999888999999999996 66677799998887 449
Q ss_pred EEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceeec-CCceeee
Q psy1766 80 HLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGG 158 (214)
Q Consensus 80 ~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~-~~~~~g~ 158 (214)
++++.+++.|.-.||..|+..|+||+++|+|+.+.+..+||+.+++.+..+...++||+||+|+.+++.|.. +...+|+
T Consensus 204 ~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGg 283 (578)
T KOG3736|consen 204 RILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGG 283 (578)
T ss_pred eEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 7899999
Q ss_pred eEecccceeecCCccccCCCCCC
Q psy1766 159 FNWGLHFKWENLPKVKTSSNPSY 181 (214)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~ 181 (214)
|+|.+.|+|..+|......+...
T Consensus 284 FdW~l~f~w~~lP~~~~~~~~~~ 306 (578)
T KOG3736|consen 284 FDWELTFKWERLPLPEEKRRELP 306 (578)
T ss_pred eecceeEEeccCCccHhhcccCC
Confidence 99999999999999887775443
No 4
>KOG3737|consensus
Probab=99.95 E-value=2.2e-27 Score=193.22 Aligned_cols=175 Identities=42% Similarity=0.754 Sum_probs=160.6
Q ss_pred CCccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766 1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH 80 (214)
Q Consensus 1 ~~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~ 80 (214)
|..+|+-+.|++++|..||||+.+|+.+..|.+++.|++..+++....|||+|||-|+. +...+.+.+|...+ +.-|+
T Consensus 141 R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdK-ehLkekLDeYv~~f-nGlVk 218 (603)
T KOG3737|consen 141 RQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDK-EHLKEKLDEYVKLF-NGLVK 218 (603)
T ss_pred CHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCcc-HHHHHHHHHHHHHh-cCEEE
Confidence 34689999999999999999999999999999999999999999888899999999987 67889999999988 77899
Q ss_pred EEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCCcceee---c--CCce
Q psy1766 81 LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYT---S--SALV 155 (214)
Q Consensus 81 ~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~---~--~~~~ 155 (214)
+++++++.|.-.||-.|++.|.|+.++|||+.|.+..+|+..|++.+.++..+..+|.||.||.++++|. + ....
T Consensus 219 V~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~ 298 (603)
T KOG3737|consen 219 VFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHA 298 (603)
T ss_pred EEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 2 2257
Q ss_pred eeeeEecccceeecCCccccCC
Q psy1766 156 RGGFNWGLHFKWENLPKVKTSS 177 (214)
Q Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~ 177 (214)
+|.|.|+|.++-.++++.+...
T Consensus 299 rGifeWgmLyKe~~~t~rE~r~ 320 (603)
T KOG3737|consen 299 RGIFEWGMLYKEVPLTPREKRL 320 (603)
T ss_pred cchhhhhheeccCCCCHHHHHh
Confidence 8999999999988888755433
No 5
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.93 E-value=7.6e-25 Score=182.22 Aligned_cols=117 Identities=27% Similarity=0.329 Sum_probs=106.0
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
.+|.||||||+||++ ++|.+||+|+++|++++ +|||||||||+ |++.++++++..+. +++++++ .+|.|.+.
T Consensus 4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgSt--D~t~~i~~~~~~~~--~~i~vi~-~~n~G~~~ 75 (328)
T PRK10073 4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTA--LEIIIVNDGST--DNSVEIAKHYAENY--PHVRLLH-QANAGVSV 75 (328)
T ss_pred CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCC--ccHHHHHHHHHhhC--CCEEEEE-CCCCChHH
Confidence 468899999999999 99999999999999987 79999999999 89999999998875 7899987 46999999
Q ss_pred HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEEEe
Q psy1766 93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVTVP 137 (214)
Q Consensus 93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv~~ 137 (214)
|+|.|++.|+|+||+|+|+|+.+.|++++.+++.+.++ .+++++.
T Consensus 76 arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~ 121 (328)
T PRK10073 76 ARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCN 121 (328)
T ss_pred HHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEc
Confidence 99999999999999999999999999999999988654 4555553
No 6
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.92 E-value=2.7e-24 Score=174.85 Aligned_cols=110 Identities=21% Similarity=0.308 Sum_probs=99.8
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
.+|.||||||+||++ +.|.+||+|+++|++++ +|||||||||+ + .+.++++..++.++++++++++.|.|.+.
T Consensus 3 ~~p~VSVIip~yN~~-~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~--~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~ 75 (279)
T PRK10018 3 DNPLISIYMPTWNRQ-QLAIRAIKSVLRQDYSN--WEMIIVDDCST--S--WEQLQQYVTALNDPRITYIHNDINSGACA 75 (279)
T ss_pred CCCEEEEEEEeCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--C--HHHHHHHHHHcCCCCEEEEECCCCCCHHH
Confidence 468999999999999 99999999999999988 79999999998 3 45667776654457999999999999999
Q ss_pred HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
|+|.|++.|+|+||+|+|+|+.+.|++|+.+++.+.+
T Consensus 76 a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 76 VRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 9999999999999999999999999999999998865
No 7
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.91 E-value=1.2e-23 Score=162.82 Aligned_cols=116 Identities=18% Similarity=0.275 Sum_probs=100.1
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCC-hHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN-LHGEVETFVKGLNNGRVHLYRTSKREGLIRA 93 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~-t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a 93 (214)
|++|||||+||++++.|.+||+|+++|+++. +|||||||||+ |+ +.+.++.+..+. +.++++..+++.|.+.+
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~--d~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~a 74 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDAST--DPEVKRVLKKYAAQD--PRIKVVFREENGGISAA 74 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCC--ChHHHHHHHHHHhcC--CCEEEEEcccCCCHHHH
Confidence 6799999999998789999999999999887 79999999999 65 455666665553 67888888899999999
Q ss_pred HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc-CCCEEEE
Q psy1766 94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE-RTNTVTV 136 (214)
Q Consensus 94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~vv~ 136 (214)
+|.|++.++++|++|+|+|+.+++++++.+++.+.+ ....+++
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~ 118 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIY 118 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEE
Confidence 999999999999999999999999999999999843 3333443
No 8
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.91 E-value=2.2e-24 Score=183.22 Aligned_cols=122 Identities=17% Similarity=0.183 Sum_probs=105.0
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCC-CcEEEEEcC----C
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNN-GRVHLYRTS----K 86 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~-~~v~~i~~~----~ 86 (214)
+..|+||||||+||++ +.|.+||+|+.+|+++.. +|||||||+|+ |+|.++++++.++++. .++++++.+ .
T Consensus 37 ~~~p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~-~eIIVVDd~St--D~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 37 EAWPAVVAVVPARNEA-DVIGECVTSLLEQDYPGK-LHVILVDDHST--DGTADIARAAARAYGRGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCEEEEEecCCcH-hHHHHHHHHHHhCCCCCc-eEEEEEeCCCC--CcHHHHHHHHHHhcCCCCcEEEecCCCCCCC
Confidence 5789999999999999 999999999999999843 79999999999 8999999999876521 278888743 2
Q ss_pred CcchHHHHHhhhhhcC-----CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 87 REGLIRARMFGAKYAT-----GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 87 ~~G~~~a~n~g~~~a~-----gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
..|++.|+|.|++.|+ +||++|+|+|+.++|++++++++.+.+++..++++
T Consensus 113 ~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~ 168 (384)
T TIGR03469 113 WSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSL 168 (384)
T ss_pred CcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEe
Confidence 3588899999999999 99999999999999999999999997655444443
No 9
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.91 E-value=3e-23 Score=154.71 Aligned_cols=121 Identities=30% Similarity=0.461 Sum_probs=102.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
|||||+||+. +.|.++|+|+.+|+... +|||||||||+ |++.++++++.+. ..++++++.+.|.|.+.++|.|
T Consensus 1 Svvip~~n~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~--d~~~~~~~~~~~~--~~~i~~i~~~~n~g~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEA-EYLERTLESLLKQTDPD--FEIIVVDDGST--DETEEILEEYAES--DPNIRYIRNPENLGFSAARNRG 73 (169)
T ss_dssp EEEEEESS-T-TTHHHHHHHHHHHSGCE--EEEEEEECS-S--SSHHHHHHHHHCC--STTEEEEEHCCCSHHHHHHHHH
T ss_pred CEEEEeeCCH-HHHHHHHHHHhhccCCC--EEEEEeccccc--ccccccccccccc--cccccccccccccccccccccc
Confidence 8999999998 99999999999997666 79999999998 8999999999873 4799999999999999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD 145 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 145 (214)
++.|+++|++++|+|+.+.+++|+.+++.+.+++..++++........
T Consensus 74 ~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 74 IKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDD 121 (169)
T ss_dssp HHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECT
T ss_pred ccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 999999999999999999999999999999886665555554444333
No 10
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.90 E-value=4.4e-23 Score=159.65 Aligned_cols=118 Identities=17% Similarity=0.257 Sum_probs=100.8
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---hH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---LI 91 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~~ 91 (214)
|++|||||+||++ ..|.++|+|+.+|++++ +|||||||+|+ |++.++++++..+++..+++++....+.| .+
T Consensus 1 p~vsviip~~n~~-~~l~~~L~sl~~q~~~~--~eiivVdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 75 (196)
T cd02520 1 PGVSILKPLCGVD-PNLYENLESFFQQDYPK--YEILFCVQDED--DPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKV 75 (196)
T ss_pred CCeEEEEecCCCC-ccHHHHHHHHHhccCCC--eEEEEEeCCCc--chHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhH
Confidence 6799999999999 99999999999999988 79999999999 89999999998876334577777665655 34
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.++|.|++.++|||++|+|+|+.++|+||+.+++.+..+...++++
T Consensus 76 ~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~ 121 (196)
T cd02520 76 NNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTC 121 (196)
T ss_pred HHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEe
Confidence 5788999999999999999999999999999999986544444443
No 11
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=2.5e-23 Score=165.97 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=101.0
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRAR 94 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~ 94 (214)
|++|||||+||++ +.|.++|+|+.+|+++...+|||||||+|+ |.|.++++++.... ..++.++....+.|++.|+
T Consensus 1 p~vsIiIp~~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~--d~t~~i~~~~~~~~-~~~i~~~~~~~~~G~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDD--EETIAAARALRLPS-IFRVVVVPPSQPRTKPKAC 76 (241)
T ss_pred CeEEEEEecCCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCC--chHHHHHHHhccCC-CeeEEEecCCCCCchHHHH
Confidence 6899999999999 999999999999999764579999999999 89999999875421 2356666666788999999
Q ss_pred HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEE
Q psy1766 95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVT 135 (214)
Q Consensus 95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv 135 (214)
|.|+++++||||+|+|+|+.++++++.++++.+.++ .++++
T Consensus 77 n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~ 118 (241)
T cd06427 77 NYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLAC 118 (241)
T ss_pred HHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999999999999999999754 44433
No 12
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.90 E-value=1.1e-22 Score=162.48 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=104.3
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI 91 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~ 91 (214)
..+|++|||||+||++ +.|..++.++.++......+|||||||||+ |+|.++++++..+++...++++..++|.|.+
T Consensus 6 ~~~~~vsVvIp~yne~-~~l~~~l~~l~~~~~~~~~~eiivvDdgS~--D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~ 82 (243)
T PLN02726 6 EGAMKYSIIVPTYNER-LNIALIVYLIFKALQDVKDFEIIVVDDGSP--DGTQDVVKQLQKVYGEDRILLRPRPGKLGLG 82 (243)
T ss_pred CCCceEEEEEccCCch-hhHHHHHHHHHHHhccCCCeEEEEEeCCCC--CCHHHHHHHHHHhcCCCcEEEEecCCCCCHH
Confidence 4578999999999999 999999988866433221379999999999 8999999998887644578888888899999
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
.|+|.|++.|+|+|++|+|+|+.++|++|+.+++.+.++...+++
T Consensus 83 ~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 83 TAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 999999999999999999999999999999999998665444444
No 13
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.90 E-value=1.7e-22 Score=174.34 Aligned_cols=121 Identities=18% Similarity=0.263 Sum_probs=108.7
Q ss_pred CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
.+..|++|||||+||++ +.|.+||+|+.+|+++...+|||||||||+ |+|.++++++.+++ ++++++..+++.|+
T Consensus 45 ~~~~P~vsVIIP~yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~St--D~T~~il~~~~~~~--~~v~v~~~~~~~Gk 119 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSE-DTLFNCIESIYNQTYPIELIDIILANNQST--DDSFQVFCRAQNEF--PGLSLRYMNSDQGK 119 (439)
T ss_pred cCCCCCEEEEEEeCCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCC--hhHHHHHHHHHHhC--CCeEEEEeCCCCCH
Confidence 36689999999999999 999999999999999976679999999999 89999999888775 67777766778999
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+.|+|.|++.++|+||+++|+|+.+++++++++++.+.+++++.++
T Consensus 120 a~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v 165 (439)
T TIGR03111 120 AKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAM 165 (439)
T ss_pred HHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999999999999999999999999876655443
No 14
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.90 E-value=1e-22 Score=157.62 Aligned_cols=122 Identities=22% Similarity=0.226 Sum_probs=104.7
Q ss_pred EEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766 18 SVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF 96 (214)
Q Consensus 18 SVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~ 96 (214)
|||||+||++ .++|.+||+|+++|++++ +|||||||||++ |.+.++++++..++ +++++..++|.|.+.|+|.
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~-d~t~~~~~~~~~~~---~i~~i~~~~n~G~~~a~N~ 74 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVT-QSLNEVLEEFKRKL---PLKVVPLEKNRGLGKALNE 74 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCc-hhHHHHHHHHHhcC---CeEEEEcCccccHHHHHHH
Confidence 7999999987 359999999999999986 699999999854 88999999988875 4899998899999999999
Q ss_pred hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEEeeeeeecCC
Q psy1766 97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDIINAD 145 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~~~~~~~~~~ 145 (214)
|++.++|+||+|+|+|+.++|++++.++..+.+++ ..++++....++.+
T Consensus 75 g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (201)
T cd04195 75 GLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSD 124 (201)
T ss_pred HHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCC
Confidence 99999999999999999999999999999997654 44555545444433
No 15
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.89 E-value=1.6e-22 Score=160.32 Aligned_cols=123 Identities=17% Similarity=0.150 Sum_probs=101.0
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcc-hH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREG-LI 91 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G-~~ 91 (214)
|+||||||+||++ +.|.+||+|+++|+++...+||||||| |+ |+|.++++++..++. ..+++++....+.| ++
T Consensus 1 p~vSViIp~yNe~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~--D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~ 76 (232)
T cd06437 1 PMVTVQLPVFNEK-YVVERLIEAACALDYPKDRLEIQVLDD-ST--DETVRLAREIVEEYAAQGVNIKHVRRADRTGYKA 76 (232)
T ss_pred CceEEEEecCCcH-HHHHHHHHHHHhcCCCccceEEEEEEC-CC--CcHHHHHHHHHHHHhhcCCceEEEECCCCCCCch
Confidence 5799999999999 999999999999999865579999998 88 899999988765431 35677777666667 68
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI 141 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 141 (214)
.|+|.|++.++|+||+|+|+|+.++|+||+.+...+......++.+.+..
T Consensus 77 ~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~ 126 (232)
T cd06437 77 GALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH 126 (232)
T ss_pred HHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee
Confidence 89999999999999999999999999999997776654444455554433
No 16
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.89 E-value=2.7e-22 Score=160.56 Aligned_cols=127 Identities=25% Similarity=0.295 Sum_probs=112.4
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI 91 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~ 91 (214)
+.+|++|||||+||++ +.|.+||+|+.+|+++...+|||||||+|+ |.+.++++++..+ +++++..+++.|.+
T Consensus 26 ~~~~~isVvip~~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~----~v~~i~~~~~~g~~ 98 (251)
T cd06439 26 AYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGST--DGTAEIAREYADK----GVKLLRFPERRGKA 98 (251)
T ss_pred CCCCEEEEEEecCCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCC--ccHHHHHHHHhhC----cEEEEEcCCCCChH
Confidence 6788999999999999 999999999999998765579999999999 8999999987553 68888888899999
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD 145 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 145 (214)
.++|.|++.+++||++|+|+|+.+++++++++++.+.++...++++.....+.+
T Consensus 99 ~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~ 152 (251)
T cd06439 99 AALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGG 152 (251)
T ss_pred HHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCc
Confidence 999999999999999999999999999999999999766666777666655443
No 17
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=2.9e-22 Score=156.09 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=101.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
|||||+||++ +.|.+||+|+++|+++. +|||||||||+ |+|.++++++..++ +..++++..+.+.|.+.++|.|
T Consensus 1 sIvIp~yn~~-~~l~~~l~sl~~q~~~~--~eiiVvddgS~--d~t~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGE-KYLREQLDSILAQTYKN--DELIISDDGST--DGTVEIIKEYIDKD-PFIIILIRNGKNLGVARNFESL 74 (214)
T ss_pred CEEEEecCcH-HHHHHHHHHHHhCcCCC--eEEEEEeCCCC--CCcHHHHHHHHhcC-CceEEEEeCCCCccHHHHHHHH
Confidence 6999999999 99999999999999886 79999999999 89999999998876 3467788888899999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC-CCEEEEee
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER-TNTVTVPI 138 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~vv~~~ 138 (214)
+..++|+||+|+|+|+.+.|++|..+++.+.++ ...+++..
T Consensus 75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~ 116 (214)
T cd04196 75 LQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSD 116 (214)
T ss_pred HHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecC
Confidence 999999999999999999999999999995444 44444443
No 18
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.89 E-value=3.2e-22 Score=157.25 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=101.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHH
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRAR 94 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~ 94 (214)
||||+||++ +.|.+||+|+++|+++.. +|||||||||+ |+|.++++++..++...+++++.. +.+.|.+.|+
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~-~eiiVvDd~S~--d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~ 76 (219)
T cd06913 1 IILPVHNGE-QWLDECLESVLQQDFEGT-LELSVFNDAST--DKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAK 76 (219)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCCCCC-EEEEEEeCCCC--ccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHH
Confidence 699999999 999999999999998732 79999999999 899999999887764456777642 3568999999
Q ss_pred HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766 95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI 141 (214)
Q Consensus 95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 141 (214)
|.|++.|+|+|++|+|+|+.+.|++++.++..+.+++..++++.+..
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~ 123 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQVRR 123 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEEEEe
Confidence 99999999999999999999999999999988877666666554443
No 19
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.88 E-value=9.7e-22 Score=157.64 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=94.2
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhc---CCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSR---TGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI 91 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q---~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~ 91 (214)
|++|||||+||++ +.|.+||+|+.+| ++.+ +|||||||||+ |+|.++++++..+ .+++++.. ++.|.+
T Consensus 1 ~~vSVIi~~yN~~-~~l~~~l~sl~~~~~~~~~~--~EiIVvDdgSt--D~t~~i~~~~~~~---~~i~~i~~-~~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNL-EGIVKTHASLRHLAQDPGIS--FEWIVVDGGSN--DGTREFLENLNGI---FNLRFVSE-PDNGIY 71 (248)
T ss_pred CeEEEEEEeCCCH-HHHHHHHHHHHHHHhCCCCC--EEEEEEECcCc--ccHHHHHHHhccc---CCEEEEEC-CCCCHH
Confidence 6899999999999 9999999999753 3444 79999999999 8999999987654 36888875 477999
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
.|+|.|++.|+|+||+|+|+|+.+.|+.++.+.....+++..++++.
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~ 118 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGD 118 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEee
Confidence 99999999999999999999999999876654444444445555443
No 20
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.88 E-value=6.1e-22 Score=170.09 Aligned_cols=118 Identities=19% Similarity=0.254 Sum_probs=107.8
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI 91 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~ 91 (214)
...|++||+||+|||+ +.+.+|++|+.+|++++ +|||||||||+ |++.+.++++..++ +++++++.++|.|++
T Consensus 51 ~~~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~--~eiiVvdD~s~--d~t~~~l~~~~~~~--~~v~~i~~~~n~Gka 123 (420)
T PRK11204 51 KEYPGVSILVPCYNEG-ENVEETISHLLALRYPN--YEVIAINDGSS--DNTGEILDRLAAQI--PRLRVIHLAENQGKA 123 (420)
T ss_pred CCCCCEEEEEecCCCH-HHHHHHHHHHHhCCCCC--eEEEEEECCCC--ccHHHHHHHHHHhC--CcEEEEEcCCCCCHH
Confidence 4568999999999999 99999999999999987 79999999999 89999999998875 689999988899999
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
.|+|.|++.+++||++++|+|+.++|++++++++.+++++...++
T Consensus 124 ~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v 168 (420)
T PRK11204 124 NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAV 168 (420)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEE
Confidence 999999999999999999999999999999999999766655443
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.88 E-value=1.1e-21 Score=155.01 Aligned_cols=119 Identities=13% Similarity=0.103 Sum_probs=100.6
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc-hHHH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG-LIRA 93 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G-~~~a 93 (214)
|+||||||+||++.+.|++||+|++.|++++..+|||||||||+ |++.++++++..++ .++++..+.+.| .+++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRR--PELRALAAELGVEY---GYRYLTRPDNRHAKAGN 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCc--hhHHHHHHHhhccc---CceEEEeCCCCCCcHHH
Confidence 68999999999863679999999999999875569999999999 89999999987653 566666665555 6778
Q ss_pred HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEee
Q psy1766 94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPI 138 (214)
Q Consensus 94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~ 138 (214)
+|.|++.++||||+|+|+|+.++|++|+.++..+.+++. .++++.
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~ 121 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTP 121 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecc
Confidence 999999999999999999999999999999999987444 444443
No 22
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=1e-21 Score=151.12 Aligned_cols=115 Identities=22% Similarity=0.273 Sum_probs=96.9
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
|||||+||++ +.|.+||.|+.+|++++ +|||||||+|+ |++.++++++..+ +.++...++.|.+.++|.|
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~--~evivvDd~s~--d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPN--IEYIVIDGGST--DGTVDIIKKYEDK-----ITYWISEPDKGIYDAMNKG 70 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCC--ceEEEEeCCCC--ccHHHHHHHhHhh-----cEEEEecCCcCHHHHHHHH
Confidence 6999999999 99999999999999987 79999999999 8999999987543 3344457899999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhc-CCCEEEEeeeeee
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE-RTNTVTVPIIDII 142 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 142 (214)
++.|+++||+|+|+|+.+.++++..++..+.. ....++++.....
T Consensus 71 ~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 116 (202)
T cd06433 71 IALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLV 116 (202)
T ss_pred HHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEE
Confidence 99999999999999999999999999966643 3444555444433
No 23
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.88 E-value=1.7e-21 Score=168.49 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=106.9
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..|.+|||||+|||+ ..+.+||+|+++|++++ +|||||||||+ |+|.+.++++.+++ +++++++.++|.|++.
T Consensus 73 ~~p~vsViIP~yNE~-~~i~~~l~sll~q~yp~--~eIivVdDgs~--D~t~~~~~~~~~~~--~~v~vv~~~~n~Gka~ 145 (444)
T PRK14583 73 GHPLVSILVPCFNEG-LNARETIHAALAQTYTN--IEVIAINDGSS--DDTAQVLDALLAED--PRLRVIHLAHNQGKAI 145 (444)
T ss_pred CCCcEEEEEEeCCCH-HHHHHHHHHHHcCCCCC--eEEEEEECCCC--ccHHHHHHHHHHhC--CCEEEEEeCCCCCHHH
Confidence 468899999999999 99999999999999997 79999999999 89999999988875 7899998888999999
Q ss_pred HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
|+|.|++.+++||++++|+|+.++++++.++++.+.+++...++
T Consensus 146 AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v 189 (444)
T PRK14583 146 ALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAV 189 (444)
T ss_pred HHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEE
Confidence 99999999999999999999999999999999998766554443
No 24
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.88 E-value=2e-21 Score=164.51 Aligned_cols=120 Identities=16% Similarity=0.267 Sum_probs=102.7
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc--
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG-- 89 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G-- 89 (214)
...|.||||||+||++ +.|.+||+|+++|+|++ +||||+||+|+ |.+.++++++.+++++.+++++..+.+.|
T Consensus 38 ~~~p~VSViiP~~nee-~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~--D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~ 112 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDE-PELYENLASFCRQDYPG--FQMLFGVQDPD--DPALAVVRRLRADFPDADIDLVIDARRHGPN 112 (373)
T ss_pred CCCCCeEEEEECCCCC-hhHHHHHHHHHhcCCCC--eEEEEEeCCCC--CcHHHHHHHHHHhCCCCceEEEECCCCCCCC
Confidence 4578999999999999 99999999999999998 79999999999 89999999998887555688887666555
Q ss_pred -hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 90 -LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 90 -~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+..+.+.+++.|+||+++|+|+|+.++|+||++++..+++....+++
T Consensus 113 ~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~ 160 (373)
T TIGR03472 113 RKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVT 160 (373)
T ss_pred hHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEe
Confidence 44566667899999999999999999999999999999654444444
No 25
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.87 E-value=1.3e-21 Score=153.65 Aligned_cols=112 Identities=27% Similarity=0.309 Sum_probs=100.2
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCC-CCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTG-QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~-~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
||||+||++ ..|.++|+|+.+|++ .. +|||||||||+ |++.++++++.+++ +.+++++.+.+.|.+.|+|.|
T Consensus 1 ViIp~yn~~-~~l~~~l~sl~~q~~~~~--~eiiiVDd~S~--d~t~~~~~~~~~~~--~~i~~~~~~~n~G~~~a~n~g 73 (224)
T cd06442 1 IIIPTYNER-ENIPELIERLDAALKGID--YEIIVVDDNSP--DGTAEIVRELAKEY--PRVRLIVRPGKRGLGSAYIEG 73 (224)
T ss_pred CeEeccchh-hhHHHHHHHHHHhhcCCC--eEEEEEeCCCC--CChHHHHHHHHHhC--CceEEEecCCCCChHHHHHHH
Confidence 699999999 999999999999997 44 79999999999 89999999988775 678888889999999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEEEe
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVTVP 137 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv~~ 137 (214)
++.|+||||+|+|+|+.+.|++++.+++.+. ++.+.++++
T Consensus 74 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 114 (224)
T cd06442 74 FKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGS 114 (224)
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 9999999999999999999999999999964 445555543
No 26
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.87 E-value=1.6e-21 Score=155.31 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=103.2
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
++|||||+||++ +.|.++|.++.+|+++...+|||||||+|+ |++.+.++++..+. +.++++..+ +.|.+.|+|
T Consensus 1 ~~sIiip~~n~~-~~l~~~l~sl~~q~~~~~~~evivvd~~s~--d~~~~~~~~~~~~~--~~v~~i~~~-~~~~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGST--DGTREIVQEYAAKD--PRIRLIDNP-KRIQSAGLN 74 (249)
T ss_pred CEEEEEEcCCch-hhHHHHHHHHHhccCCCCccEEEEEeCCCC--ccHHHHHHHHHhcC--CeEEEEeCC-CCCchHHHH
Confidence 489999999999 999999999999998633489999999999 89999999988764 678888854 668999999
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
.|++.|++||++|+|+|+.++|++|+++++.+.+....++++...
T Consensus 75 ~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~ 119 (249)
T cd02525 75 IGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPME 119 (249)
T ss_pred HHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEeccee
Confidence 999999999999999999999999999999887665555554433
No 27
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.87 E-value=3.7e-22 Score=152.27 Aligned_cols=111 Identities=23% Similarity=0.264 Sum_probs=97.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcC---CCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRT---GQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~---~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
||||+||++ +.|.++|+++..+. ... +|||||||||+ |++.+.++.+..+. ++++++...+|.|.+.|+|
T Consensus 1 viIp~~n~~-~~l~~~l~sl~~~~~~~~~~--~eiivvdd~s~--d~t~~~~~~~~~~~--~~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEE-ENLPELYERLKAVLESLGYD--YEIIFVDDGST--DRTLEILRELAARD--PRVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCch-hhHHHHHHHHHHHHHhcCCC--eEEEEEeCCCC--ccHHHHHHHHHhhC--CCEEEEEecCCCCcHHHHH
Confidence 699999999 88888888876554 344 79999999999 89999999988775 6899998889999999999
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
.|++.++++|++++|+|+.++++|++.+++.+.++.+++.+
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~v~g 114 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGYDVVYG 114 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999999997666555444
No 28
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.87 E-value=3.3e-21 Score=160.17 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=99.9
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHH---hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLL---SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~---~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
.++++|||||+||++ +.|.++++++. +|...+ +|||||||||+ |+|.++++++.++. +.+++.+..+.|.|
T Consensus 4 ~~~~vSVVIP~yNE~-~~i~~~l~~l~~~~~~~~~~--~EIIvVDDgS~--D~T~~il~~~~~~~-~~~v~~i~~~~n~G 77 (325)
T PRK10714 4 PIKKVSVVIPVYNEQ-ESLPELIRRTTAACESLGKE--YEILLIDDGSS--DNSAEMLVEAAQAP-DSHIVAILLNRNYG 77 (325)
T ss_pred CCCeEEEEEcccCch-hhHHHHHHHHHHHHHhCCCC--EEEEEEeCCCC--CcHHHHHHHHHhhc-CCcEEEEEeCCCCC
Confidence 456799999999999 88888888764 455544 79999999999 89999999887653 45677777788999
Q ss_pred hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEE
Q psy1766 90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTV 134 (214)
Q Consensus 90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~v 134 (214)
++.|+|.|+++|+||+++++|+|+..+|+++.++++.++++.++|
T Consensus 78 ~~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~DvV 122 (325)
T PRK10714 78 QHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGYDVV 122 (325)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhCCEE
Confidence 999999999999999999999999999999999999997765544
No 29
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.87 E-value=2.5e-21 Score=144.81 Aligned_cols=118 Identities=25% Similarity=0.302 Sum_probs=99.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||++ +.|.++|.|+++|+++. +||+||||+|+ |.+.+.+.++.... ...+.++...++.|.+.++|.|+
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~--~~iivvdd~s~--d~t~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPK--LEVIVVDDGST--DDTLEILEELAALY-IRRVLVVRDKENGGKAGALNAGL 74 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCc--eEEEEEeCCCc--cchHHHHHHHhccc-cceEEEEEecccCCchHHHHHHH
Confidence 689999999 99999999999999866 79999999999 89999998876653 24567777788999999999999
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEEeeeeee
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDII 142 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~~~~~~~ 142 (214)
+.++++|++|+|+|+.+.+++++.++..+.+++ ..++++.....
T Consensus 75 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~ 119 (180)
T cd06423 75 RHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVR 119 (180)
T ss_pred HhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEe
Confidence 999999999999999999999999966665544 44444444444
No 30
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.86 E-value=7.2e-22 Score=150.70 Aligned_cols=116 Identities=25% Similarity=0.253 Sum_probs=101.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||++ +.|.+||+|+.+|.++...+|||||||+|+ |.+.+.++++..+. +.++++..++|.|.+.|+|.|+
T Consensus 1 iii~~~n~~-~~l~~~l~sl~~~~~~~~~~eiivvd~~s~--d~~~~~~~~~~~~~--~~~~~~~~~~n~G~~~a~n~g~ 75 (185)
T cd04179 1 VVIPAYNEE-ENIPELVERLLAVLEEGYDYEIIVVDDGST--DGTAEIARELAARV--PRVRVIRLSRNFGKGAAVRAGF 75 (185)
T ss_pred CeecccChH-hhHHHHHHHHHHHhccCCCEEEEEEcCCCC--CChHHHHHHHHHhC--CCeEEEEccCCCCccHHHHHHH
Confidence 689999999 999999999999987322379999999999 89999999988875 6778899899999999999999
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEEEeee
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVTVPII 139 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv~~~~ 139 (214)
+.|+|||++|+|+|+.+.|+||++++..+. .+.+.++++..
T Consensus 76 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~ 117 (185)
T cd04179 76 KAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRF 117 (185)
T ss_pred HHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 999999999999999999999999999854 45555555443
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=1.7e-21 Score=150.98 Aligned_cols=114 Identities=17% Similarity=0.179 Sum_probs=100.5
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||++ +.|.+||+|+.+|+++. +|||||||||+ |.|.+.++++.... +++++..++|.|.+.++|.|+
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~--~eiiivD~~s~--d~t~~~~~~~~~~~---~i~~~~~~~n~g~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPP--DHIIVIDNAST--DGTAEWLTSLGDLD---NIVYLRLPENLGGAGGFYEGV 72 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCC--ceEEEEECCCC--cchHHHHHHhcCCC---ceEEEECccccchhhHHHHHH
Confidence 699999999 99999999999999886 69999999999 89999999987654 488999899999999999999
Q ss_pred hhc---CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 99 KYA---TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 99 ~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
+.| ++||++|+|+|+.+++++++.+++.+.+....+++|...
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 117 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL 117 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE
Confidence 876 689999999999999999999999998555566665433
No 32
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.86 E-value=4.8e-21 Score=159.69 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=99.9
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCC------CCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEE
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTG------QSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYR 83 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~------~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~ 83 (214)
...|.+|||||+||++ +.|.++|+++.++.. +...+|||||||||+ |+|.++++++..++ ++.+++++.
T Consensus 67 ~~~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgSt--D~T~~i~~~~~~~~~~~~~~i~vi~ 143 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSK--DKTLKVAKDFWRQNINPNIDIRLLS 143 (333)
T ss_pred CCCeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCC--CchHHHHHHHHHhcCCCCCcEEEEE
Confidence 4567899999999999 999999999876532 111279999999999 89999999988763 234699999
Q ss_pred cCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 84 TSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 84 ~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
.+.|.|.+.|+|.|+++|+|+||+++|+|+..+++.++.+++.+.+
T Consensus 144 ~~~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 144 LLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLK 189 (333)
T ss_pred cCCCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998853
No 33
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=1e-20 Score=148.75 Aligned_cols=117 Identities=25% Similarity=0.254 Sum_probs=99.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMF 96 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~ 96 (214)
||||+||+. +.|.+||+|++.|+++...+|||||||||+ |.+.+.++ +.......+++++..+ .+.|.+.++|.
T Consensus 1 viip~~n~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~--d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~ 76 (229)
T cd04192 1 VVIAARNEA-ENLPRLLQSLSALDYPKEKFEVILVDDHST--DGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTT 76 (229)
T ss_pred CEEEecCcH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCC--cChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHH
Confidence 699999999 999999999999999875579999999999 89999888 4444334678888765 47889999999
Q ss_pred hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
|++.++++||+|+|+|+.+.|+||++++..+.++...++++..
T Consensus 77 g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~ 119 (229)
T cd04192 77 AIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPV 119 (229)
T ss_pred HHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeee
Confidence 9999999999999999999999999999988766555555433
No 34
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.86 E-value=4.6e-21 Score=149.80 Aligned_cols=112 Identities=21% Similarity=0.202 Sum_probs=98.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCC----CCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHH
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTG----QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRAR 94 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~----~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~ 94 (214)
||||+||++ +.|.++|+++.+|.. .. +|||||||||+ |+|.++++++..++ +..+++++.+.|.|.+.|+
T Consensus 1 iiip~yN~~-~~l~~~l~~l~~~~~~~~~~~--~eiivvdd~S~--D~t~~~~~~~~~~~-~~~i~~i~~~~n~G~~~a~ 74 (211)
T cd04188 1 VVIPAYNEE-KRLPPTLEEAVEYLEERPSFS--YEIIVVDDGSK--DGTAEVARKLARKN-PALIRVLTLPKNRGKGGAV 74 (211)
T ss_pred CEEcccChH-HHHHHHHHHHHHHHhccCCCC--EEEEEEeCCCC--CchHHHHHHHHHhC-CCcEEEEEcccCCCcHHHH
Confidence 699999999 999999999999864 34 79999999999 89999999998875 2236889988899999999
Q ss_pred HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEE
Q psy1766 95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTV 136 (214)
Q Consensus 95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~ 136 (214)
|.|++.|+|+||+++|+|+.+++++++.+++.+.++. +.+++
T Consensus 75 ~~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 75 RAGMLAARGDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred HHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 9999999999999999999999999999999965544 44444
No 35
>KOG2978|consensus
Probab=99.85 E-value=7.5e-21 Score=141.07 Aligned_cols=118 Identities=26% Similarity=0.340 Sum_probs=101.0
Q ss_pred CCceEEEEEEeCCCchHHH---HHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 14 LPSTSVIICFYNEHPATLY---RSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~---~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
+++.|||+|+|||. +.|. ..+.....+...+ +|||||||+|. |+|.+.++.+++.+...+|.+.......|.
T Consensus 2 ~~kYsvilPtYnEk-~Nlpi~~~li~~~~~e~~~~--~eiIivDD~Sp--DGt~~~a~~L~k~yg~d~i~l~pR~~klGL 76 (238)
T KOG2978|consen 2 SIKYSVILPTYNEK-ENLPIITRLIAKYMSEEGKK--YEIIIVDDASP--DGTQEVAKALQKIYGEDNILLKPRTKKLGL 76 (238)
T ss_pred CcceeEEeccccCC-CCCeeeHHHHHhhhhhhcCc--eEEEEEeCCCC--CccHHHHHHHHHHhCCCcEEEEeccCcccc
Confidence 46799999999998 5544 4444444444444 89999999999 999999999998887889999988889999
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC-CEEEE
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-NTVTV 136 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~vv~ 136 (214)
+.|.-.|+++|+|+|+++||+|...+|.++.++++..+++. +++..
T Consensus 77 gtAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~G 123 (238)
T KOG2978|consen 77 GTAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLG 123 (238)
T ss_pred hHHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeee
Confidence 99999999999999999999999999999999999988776 44443
No 36
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.85 E-value=2.2e-20 Score=146.41 Aligned_cols=110 Identities=22% Similarity=0.233 Sum_probs=93.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF 96 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~ 96 (214)
||||||+||++ +.|.++|+|+++|++.. +|||||||+|+ |++.+.+++ .+++++. .+.|.+.++|.
T Consensus 1 vsvii~~~n~~-~~l~~~l~sl~~q~~~~--~evivvdd~s~--d~~~~~~~~-------~~~~~~~--~~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEA-ENLPRLLASLRRLNPLP--LEIIVVDGGST--DGTVAIARS-------AGVVVIS--SPKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcH-HHHHHHHHHHHhccCCC--cEEEEEeCCCC--ccHHHHHhc-------CCeEEEe--CCcCHHHHHHH
Confidence 69999999999 99999999999999865 79999999999 888887766 3566665 45789999999
Q ss_pred hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
|++.|++++++|+|+|+.++++++++++..+......++++...
T Consensus 67 g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 110 (221)
T cd02522 67 GAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLR 110 (221)
T ss_pred HHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEee
Confidence 99999999999999999999999999987776665555544333
No 37
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.85 E-value=2.4e-20 Score=147.87 Aligned_cols=115 Identities=16% Similarity=0.311 Sum_probs=95.8
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChH-HHHHHHHhhcCCCcEEEEEcCCCcc-hHHHHH
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH-GEVETFVKGLNNGRVHLYRTSKREG-LIRARM 95 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~-~~~~~~~~~~~~~~v~~i~~~~~~G-~~~a~n 95 (214)
|||||+||++.+.|.++|+|+.+|+++. +|||||||+|+ |++. +.++++..++ +.+++++....+.| .+.|+|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~--D~t~~~~i~~~~~~~-~~~i~~i~~~~~~G~~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTK--DEALWKPVEAHCAQL-GERFRFFHVEPLPGAKAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCC--chhHHHHHHHHHHHh-CCcEEEEEcCCCCCCchHHHH
Confidence 7999999997358999999999999987 79999999999 6764 6777776654 45788888776777 489999
Q ss_pred hhhhhcC--CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 96 FGAKYAT--GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 96 ~g~~~a~--gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.|++.+. +|||+|+|+|+.++|++|..++..+++....++.+
T Consensus 76 ~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 119 (236)
T cd06435 76 YALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQA 119 (236)
T ss_pred HHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEec
Confidence 9999985 69999999999999999999999986544344433
No 38
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.84 E-value=2.6e-20 Score=153.73 Aligned_cols=122 Identities=25% Similarity=0.339 Sum_probs=105.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
.||++++||++||.. +.+.+||.++.+|+++. .++++|||+|+ |.+.+.++... + ++++++.+++|.|.++
T Consensus 1 ~~~~i~~iiv~yn~~-~~l~~~l~~l~~~~~~~--~~iv~vDn~s~--d~~~~~~~~~~--~--~~v~~i~~~~NlG~ag 71 (305)
T COG1216 1 SMPKISIIIVTYNRG-EDLVECLASLAAQTYPD--DVIVVVDNGST--DGSLEALKARF--F--PNVRLIENGENLGFAG 71 (305)
T ss_pred CCcceEEEEEecCCH-HHHHHHHHHHhcCCCCC--cEEEEccCCCC--CCCHHHHHhhc--C--CcEEEEEcCCCccchh
Confidence 378999999999999 99999999999999998 47778999999 89998888732 2 7999999999999999
Q ss_pred HHHhhhhhcCCC---EEEEEcCCCccCcCchHHHHHHHhcCCCEEEE-eeeeeec
Q psy1766 93 ARMFGAKYATGK---VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV-PIIDIIN 143 (214)
Q Consensus 93 a~n~g~~~a~gd---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~-~~~~~~~ 143 (214)
+.|.|++.|.++ |++++++|..+.+++|+++++.+++.+...++ |.+...+
T Consensus 72 g~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 72 GFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred hhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 999999999654 99999999999999999999999887665554 4444433
No 39
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.84 E-value=6.3e-21 Score=150.41 Aligned_cols=120 Identities=27% Similarity=0.382 Sum_probs=88.1
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---hH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---LI 91 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~~ 91 (214)
|.||||||+||+. +.|.++|+|+++|+++. ++|+||||+|+ +++.+.++++..+++..+++++..+.+.| ++
T Consensus 1 P~v~Vvip~~~~~-~~l~~~l~sl~~~~~~~--~~v~vvd~~~~--~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~ 75 (228)
T PF13641_consen 1 PRVSVVIPAYNED-DVLRRCLESLLAQDYPR--LEVVVVDDGSD--DETAEILRALAARYPRVRVRVIRRPRNPGPGGKA 75 (228)
T ss_dssp --EEEE--BSS-H-HHHHHHHHHHTTSHHHT--EEEEEEEE-SS--S-GCTTHHHHHHTTGG-GEEEEE----HHHHHHH
T ss_pred CEEEEEEEecCCH-HHHHHHHHHHHcCCCCC--eEEEEEECCCC--hHHHHHHHHHHHHcCCCceEEeecCCCCCcchHH
Confidence 6799999999999 99999999999998866 79999999999 88989999988887434678888766555 78
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
.++|.|++.+++++|+|+|+|+.++|++|..+++.+......++.+..
T Consensus 76 ~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~ 123 (228)
T PF13641_consen 76 RALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPV 123 (228)
T ss_dssp HHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeE
Confidence 899999999999999999999999999999999999544444444444
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.84 E-value=5.1e-20 Score=140.17 Aligned_cols=104 Identities=18% Similarity=0.246 Sum_probs=89.9
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||+. +.|.+||+|+.+|++.+ +|||||||+|+ |.+.++++++....+...+.+.+.+.+.|.+.++|.|+
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~--~eiivvdd~s~--d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILP--FEVIIADDGST--EETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCC--CEEEEEeCCCc--hhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHH
Confidence 699999999 99999999999999877 79999999999 89999999887653112333444445567899999999
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+.|+|+|++|+|+|+.++++||+.+++.+
T Consensus 76 ~~a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 76 AAAKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHhcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999999999999999999999999988
No 41
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.83 E-value=5.9e-20 Score=145.42 Aligned_cols=118 Identities=24% Similarity=0.303 Sum_probs=98.0
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
.||||||+||++.+.|.+||+|+.+|+ + +|||||||+|+ |.+.+.++.... .+.++++. .++.|++.|+|
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~--~eiivvdd~s~--d~~~~~l~~~~~---~~~~~v~~-~~~~g~~~a~n 70 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--P--LEIIVVTDGDD--EPYLSILSQTVK---YGGIFVIT-VPHPGKRRALA 70 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--C--CEEEEEeCCCC--hHHHHHHHhhcc---CCcEEEEe-cCCCChHHHHH
Confidence 489999999997789999999999998 3 69999999999 788887754332 25666665 67899999999
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeeec
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIIN 143 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 143 (214)
.|++.|++|||+|+|+|+.+++++|+++++.+.+....++++.....+
T Consensus 71 ~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~ 118 (235)
T cd06434 71 EGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILR 118 (235)
T ss_pred HHHHHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeec
Confidence 999999999999999999999999999999998544455555444443
No 42
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.83 E-value=4.9e-20 Score=141.01 Aligned_cols=110 Identities=22% Similarity=0.179 Sum_probs=92.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||++ +.|.++|+++.+|.++...+|||||||||+ |+|.++++++. ..+.......+.|++.|+|.|+
T Consensus 1 VvIp~~ne~-~~i~~~l~sl~~~~~p~~~~eiivvdd~s~--D~t~~~~~~~~-----~~~~~~~~~~~~gk~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEE-AVIGNTVRSLKAQDYPRELYRIFVVADNCT--DDTAQVARAAG-----ATVLERHDPERRGKGYALDFGF 72 (183)
T ss_pred CEEeccchH-HHHHHHHHHHHhcCCCCcccEEEEEeCCCC--chHHHHHHHcC-----CeEEEeCCCCCCCHHHHHHHHH
Confidence 699999999 999999999999998644489999999999 89998887642 2343434466889999999999
Q ss_pred hhc-----CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 99 KYA-----TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 99 ~~a-----~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+.+ ++++++++|+|+.++|+++..++..+.++.+.+.+
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g 115 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQA 115 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEE
Confidence 876 49999999999999999999999999877665444
No 43
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.83 E-value=2.9e-20 Score=153.21 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=96.1
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE-EcCCCcchH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY-RTSKREGLI 91 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~G~~ 91 (214)
..|++|||||+||++ +.|.++|+++.+|......+|||||||||+ |+|.++++++..+. -.....+ ....|.|++
T Consensus 29 ~~~~vSVVIPayNee-~~I~~~l~sl~~~~~~~~~~EIIVVDDgSt--D~T~~ia~~~~~~v-~~~~~~~~~~~~n~Gkg 104 (306)
T PRK13915 29 AGRTVSVVLPALNEE-ETVGKVVDSIRPLLMEPLVDELIVIDSGST--DATAERAAAAGARV-VSREEILPELPPRPGKG 104 (306)
T ss_pred CCCCEEEEEecCCcH-HHHHHHHHHHHHHhccCCCcEEEEEeCCCc--cHHHHHHHHhcchh-hcchhhhhccccCCCHH
Confidence 568999999999999 999999999998865222269999999999 89999998864431 0111121 236789999
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcC-CCEEEE
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAER-TNTVTV 136 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~-~~~vv~ 136 (214)
.|+|.|+..++||||+|+|+|+. ++|+++..+++.+..+ ...++.
T Consensus 105 ~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~ 151 (306)
T PRK13915 105 EALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVK 151 (306)
T ss_pred HHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEE
Confidence 99999999999999999999997 8999999999998643 334444
No 44
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.83 E-value=6.7e-20 Score=136.84 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=95.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
||||+||+. +.|.++|+|+.+|+++. +||+||||||+ +.+.+.++++. .+++++..+.+.|.+.|+|.|+
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~--~~iiivdd~s~--~~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPD--FEVIVVDNAST--DGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGI 70 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCC--eEEEEEECCCC--chHHHHHHHhC-----CCeEEEecCCCcChHHHhhHHH
Confidence 699999998 99999999999998855 79999999999 78888877652 3688888888999999999999
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+.+++++++|+|+|+.+.+++++.+++.+.+++...++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~ 108 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIV 108 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEE
Confidence 99999999999999999999999999988766554443
No 45
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.82 E-value=2.7e-19 Score=141.82 Aligned_cols=113 Identities=20% Similarity=0.230 Sum_probs=95.7
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
++|||||+||++ ..|.+||+|+..|. .|||||||||+ |+|.+++++ .+++++.. .+.|.+.++|
T Consensus 1 ~isvii~~~Ne~-~~l~~~l~sl~~~~-----~eiivvD~gSt--D~t~~i~~~-------~~~~v~~~-~~~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEE-RNIERCLESVKWAV-----DEIIVVDSGST--DRTVEIAKE-------YGAKVYQR-WWDGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcH-HHHHHHHHHHhccc-----CEEEEEeCCCC--ccHHHHHHH-------cCCEEEEC-CCCChHHHHH
Confidence 489999999999 99999999998774 39999999999 899998885 36777776 7899999999
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCC-EEEEeeeeeecC
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINA 144 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~-~vv~~~~~~~~~ 144 (214)
.|++.|+++||+++|+|+.+++++++.+.+.+.+++. ....+......+
T Consensus 65 ~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 114 (229)
T cd02511 65 FALELATNDWVLSLDADERLTPELADEILALLATDDYDGYYVPRRNFFLG 114 (229)
T ss_pred HHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEEEEEEEEcC
Confidence 9999999999999999999999999999999877653 333444444333
No 46
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.82 E-value=1.8e-19 Score=139.03 Aligned_cols=115 Identities=20% Similarity=0.284 Sum_probs=93.1
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc---CCCcchHHHHH
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT---SKREGLIRARM 95 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~---~~~~G~~~a~n 95 (214)
||||+||++ +.|.+||+|+.+|+ +. +|||||||+|+ |.|.++++ +... .+++++++. ..+.|++.|+|
T Consensus 1 ViIp~~Ne~-~~l~~~l~sl~~~~-~~--~eIivvdd~S~--D~t~~~~~-~~~~--~~~v~~i~~~~~~~~~Gk~~aln 71 (191)
T cd06436 1 VLVPCLNEE-AVIQRTLASLLRNK-PN--FLVLVIDDASD--DDTAGIVR-LAIT--DSRVHLLRRHLPNARTGKGDALN 71 (191)
T ss_pred CEEeccccH-HHHHHHHHHHHhCC-CC--eEEEEEECCCC--cCHHHHHh-heec--CCcEEEEeccCCcCCCCHHHHHH
Confidence 699999999 99999999999998 55 79999999999 89999988 3222 357888875 25789999999
Q ss_pred hhhhhcC-----------CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeee
Q psy1766 96 FGAKYAT-----------GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII 142 (214)
Q Consensus 96 ~g~~~a~-----------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 142 (214)
.|++.++ +++|+++|+|+.++|++|+.+...+......++...+...
T Consensus 72 ~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~ 129 (191)
T cd06436 72 AAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMY 129 (191)
T ss_pred HHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEe
Confidence 9999875 3799999999999999999988777644334444444433
No 47
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.82 E-value=1.7e-19 Score=142.98 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=87.8
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
+|||+||++++.|.+||+|+.+| . .|||||||+|+ +.+....+. . ..+++++..+.|.|.+.|+|.|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~--~~iivvDn~s~--~~~~~~~~~---~--~~~i~~i~~~~n~G~~~a~N~g~ 68 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---V--DKVVVVDNSSG--NDIELRLRL---N--SEKIELIHLGENLGIAKALNIGI 68 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---C--CEEEEEeCCCC--ccHHHHhhc---c--CCcEEEEECCCceehHHhhhHHH
Confidence 58999999889999999999998 2 59999999998 665544433 1 36899999899999999999999
Q ss_pred hhcCC---CEEEEEcCCCccCcCchHHHH---HHHhcCCCEEEE
Q psy1766 99 KYATG---KVLVFLDSHIEVNTHWLEPLL---VPIAERTNTVTV 136 (214)
Q Consensus 99 ~~a~g---d~i~~lD~D~~~~~~~l~~l~---~~~~~~~~~vv~ 136 (214)
+.|+| +||+|+|+|+.++|+||+.++ ..+.+++..+++
T Consensus 69 ~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 112 (237)
T cd02526 69 KAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAV 112 (237)
T ss_pred HHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEE
Confidence 99987 999999999999999999995 444445444443
No 48
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=5.1e-19 Score=135.22 Aligned_cols=106 Identities=32% Similarity=0.376 Sum_probs=95.4
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA 93 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a 93 (214)
+|++|||||+||++ ..|.++|+|+.+|++.+ +|||||||||+ |+|.++++++.... ..+.......+.|.+.+
T Consensus 2 ~~~~siiip~~n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~--d~t~~~~~~~~~~~--~~~~~~~~~~~~g~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEE-EYLPEALESLLNQTYKD--FEIIVVDDGST--DGTTEIAIEYGAKD--VRVIRLINERNGGLGAA 74 (291)
T ss_pred CccEEEEEeccchh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCC--CChHHHHHHHhhhc--ceEEEeecccCCChHHH
Confidence 68999999999999 99999999999999988 79999999999 89999999997753 45666666889999999
Q ss_pred HHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 94 RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 94 ~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+|.|+..+.++++.++|+|+. .+..+..+....
T Consensus 75 ~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999999999999999999 988888854444
No 49
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.80 E-value=6.1e-19 Score=160.43 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=99.1
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-Ccch
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-REGL 90 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~G~ 90 (214)
+..|+|||+||+|||+.+.+.+++.++++++|+...+||+|+||||+ |++.+.+++ .+++++..+. +.|+
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~--D~t~~la~~-------~~v~yI~R~~n~~gK 327 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGR--EEFRQFAQE-------VGVKYIARPTHEHAK 327 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCC--hHHHHHHHH-------CCcEEEEeCCCCcch
Confidence 45689999999999984456789999999999976689999999999 888777666 3788887654 4568
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
++++|.|+++++||||+++|+|+.+.+++|++++..+.+++.+.++
T Consensus 328 AGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglV 373 (852)
T PRK11498 328 AGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMM 373 (852)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEE
Confidence 9999999999999999999999999999999999988766665544
No 50
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.80 E-value=7.5e-19 Score=159.51 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=101.1
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh--------------HHHHHHHHhhcCCC
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL--------------HGEVETFVKGLNNG 77 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t--------------~~~~~~~~~~~~~~ 77 (214)
+..|+|||+||+|||+.+.+.+++.++.+|+|+...+||+||||||+ |+| .+.+++++++.
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgSt--D~t~~~~~~~~~~~~~~~~~~~~l~~~~--- 202 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGT--DQKRNDPDPEQAEAAQRREELKEFCRKL--- 202 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCC--ccccccchhhhhhhhhhHHHHHHHHHHc---
Confidence 56789999999999993345679999999999965589999999999 765 35666776664
Q ss_pred cEEEEEcCCCc-chHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 78 RVHLYRTSKRE-GLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 78 ~v~~i~~~~~~-G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+++++..++|. ++++++|.|+++++|||++++|+|+.+.+++|++++..+.+++.+.++
T Consensus 203 ~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~V 262 (713)
T TIGR03030 203 GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLV 262 (713)
T ss_pred CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEE
Confidence 88888876664 579999999999999999999999999999999999999777665444
No 51
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.79 E-value=5.3e-19 Score=144.34 Aligned_cols=119 Identities=26% Similarity=0.368 Sum_probs=92.4
Q ss_pred EEEEEEeCCC-----chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC---Ccc
Q psy1766 18 SVIICFYNEH-----PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK---REG 89 (214)
Q Consensus 18 SVIIp~~n~~-----~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~G 89 (214)
|||||++++. .+.|..||.++..+..+.. +||||||+||+ +...+.++++..+. ...+++.... ..|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~-~eiIvvd~~s~--~~~~~~l~~~~~~~--~~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPD-FEIIVVDDGSS--DEFDEELKKLCEKN--GFIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCC-EEEEEEECCCc--hhHHHHHHHHHhcc--CceEEEEcCCCCCCcC
Confidence 7999999988 1456777888877433322 89999999998 67778888887764 3343665543 359
Q ss_pred hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHH---HHhcCC-CEEEEeeeee
Q psy1766 90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV---PIAERT-NTVTVPIIDI 141 (214)
Q Consensus 90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~---~~~~~~-~~vv~~~~~~ 141 (214)
.+.|||.|++.|++++|+|+|+|+.++|++++.++. .+.+++ ..++.|....
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl 131 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYL 131 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeec
Confidence 999999999999999999999999999999999999 665554 5566665433
No 52
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=3.5e-18 Score=147.22 Aligned_cols=121 Identities=29% Similarity=0.324 Sum_probs=107.3
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-CCCcchHH
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-SKREGLIR 92 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~G~~~ 92 (214)
+|++||+||+|||+.+.+++++.++.+|+|+. +||+||||+|+ |++.+++++...++ .++++++.. .++.|+++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~--d~~~~~~~~~~~~~-~~~~~~~~~~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGST--DETYEILEELGAEY-GPNFRVIYPEKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCC--hhHHHHHHHHHhhc-CcceEEEeccccCccchH
Confidence 59999999999999339999999999999998 79999999999 89999999998886 346777643 57889999
Q ss_pred HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
|.|.|+..+++|+|+++|+|..+++++|.+++..+..++..+++...
T Consensus 128 al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~ 174 (439)
T COG1215 128 ALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTP 174 (439)
T ss_pred HHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCc
Confidence 99999999999999999999999999999999999887776555433
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.77 E-value=3.1e-18 Score=139.62 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=86.5
Q ss_pred EEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc
Q psy1766 22 CFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA 101 (214)
Q Consensus 22 p~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a 101 (214)
++||++.+.|.+||+|+.+|. ++||||||||+ +. +.++.+..+. +++++++.++|.|.+.|+|.|++.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~--~~--~~~~~~~~~~--~~i~~i~~~~N~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV-----DRIIAVDNSPH--SD--QPLKNARLRG--QKIALIHLGDNQGIAGAQNQGLDAS 69 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC-----CEEEEEECcCC--Cc--HhHHHHhccC--CCeEEEECCCCcchHHHHHHHHHHH
Confidence 479985589999999999985 49999999997 33 2333333332 6899999999999999999999998
Q ss_pred ---CCCEEEEEcCCCccCcCchHHHHHHHhcC--CCEEEEee
Q psy1766 102 ---TGKVLVFLDSHIEVNTHWLEPLLVPIAER--TNTVTVPI 138 (214)
Q Consensus 102 ---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~--~~~vv~~~ 138 (214)
.+|||++||+|+.+++++++.+++.+++. ...++.|.
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 111 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPR 111 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCe
Confidence 68999999999999999999999998765 34445554
No 54
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.67 E-value=3.9e-16 Score=124.92 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=79.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCC--------CCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQ--------SLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~--------~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
||||+|||+...|.++|+|+++|+|+ ...+|||||+|||+ | .|.|+
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~--d------------------------~~~gk 54 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAI--K------------------------KNRGK 54 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCcc--c------------------------ccCcc
Confidence 69999999626899999999999998 33489999999999 6 12222
Q ss_pred H-------HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEeeeeeec
Q psy1766 91 I-------RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIIDIIN 143 (214)
Q Consensus 91 ~-------~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~~~~~~ 143 (214)
. .+.|.|+..++||||+++|+|+.+++++|+.++..+..++.+ ++++.+...+
T Consensus 55 ~~~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~ 115 (244)
T cd04190 55 RDSQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMG 115 (244)
T ss_pred hHHHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcC
Confidence 2 367888889999999999999999999999999999666554 4555544433
No 55
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.66 E-value=2.5e-15 Score=120.77 Aligned_cols=116 Identities=14% Similarity=0.232 Sum_probs=88.5
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHh----cCC-CCCccEEEEEECCCCCCCChHH----HHHHHHhhcC-CCcEEEEEcCC
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLS----RTG-QSLLHEIILVNDFSEYPSNLHG----EVETFVKGLN-NGRVHLYRTSK 86 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~----q~~-~~~~~eiivVdd~s~~~d~t~~----~~~~~~~~~~-~~~v~~i~~~~ 86 (214)
+||+||+||++...|.++|.+..+ |.+ +. +||+|+||+++ +.... .+.++.++++ ..++++++..+
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~--~eI~vldD~~d--~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~ 76 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADH--FDFFILSDTRD--PDIWLAEEAAWLDLCEELGAQGRIYYRRRRE 76 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCc--eEEEEECCCCC--hHHHHHHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 699999999994458999988775 665 44 89999999987 44321 2233444432 35788888887
Q ss_pred Ccc-hHHHHHhhhhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 87 REG-LIRARMFGAKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 87 ~~G-~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+.| +++++|.++.. +++|||+++|+|..+.|++|.+++..+.+++.+.++
T Consensus 77 ~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~v 129 (254)
T cd04191 77 NTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGII 129 (254)
T ss_pred CCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 777 56777777765 788999999999999999999999999766655444
No 56
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.66 E-value=2.2e-15 Score=131.15 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=95.8
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCc
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KRE 88 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~ 88 (214)
...|.++|+||+|||+ +.+.++|++++ ++.|++ +||+|++|+|+ |+|.+.++++..++ ++++++..+ ...
T Consensus 63 ~~~p~vaIlIPA~NE~-~vI~~~l~s~L~~ldY~~--~eIiVv~d~nd--d~T~~~v~~l~~~~--p~v~~vv~~~~gp~ 135 (504)
T PRK14716 63 VPEKRIAIFVPAWREA-DVIGRMLEHNLATLDYEN--YRIFVGTYPND--PATLREVDRLAARY--PRVHLVIVPHDGPT 135 (504)
T ss_pred CCCCceEEEEeccCch-hHHHHHHHHHHHcCCCCC--eEEEEEECCCC--hhHHHHHHHHHHHC--CCeEEEEeCCCCCC
Confidence 4578999999999999 99999999975 567876 79999999999 89999999998887 556654433 234
Q ss_pred chHHHHHhhhhhc------CC---CEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 89 GLIRARMFGAKYA------TG---KVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 89 G~~~a~n~g~~~a------~g---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
|++.|.|.|++.+ +| |+++++|+|+.++|++|+.+...+ .+.+.+.+|..
T Consensus 136 ~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~-~~~~~VQ~pv~ 194 (504)
T PRK14716 136 SKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL-PRHDFVQLPVF 194 (504)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc-CCCCEEeccee
Confidence 6999999998654 55 999999999999999999876554 34444444443
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.60 E-value=3.6e-14 Score=103.36 Aligned_cols=106 Identities=33% Similarity=0.426 Sum_probs=91.4
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
|+||++|+. +.+..++.++.+|.+.. +|++|+||+++ +.+.+.+.++.... ..+..+....+.|.+.++|.|+
T Consensus 1 iii~~~~~~-~~l~~~l~s~~~~~~~~--~~i~i~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEE-PYLERCLESLLAQTYPN--FEVIVVDDGST--DGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGL 73 (156)
T ss_pred CEEeecCcH-HHHHHHHHHHHhCCccc--eEEEEEeCCCC--ccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHH
Confidence 689999999 99999999999998755 79999999999 78888888876542 3566666788999999999999
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT 131 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~ 131 (214)
+.+.+++++++|+|..+.+++++.++..+..++
T Consensus 74 ~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~ 106 (156)
T cd00761 74 KAARGEYILFLDADDLLLPDWLERLVAELLADP 106 (156)
T ss_pred HHhcCCEEEEECCCCccCccHHHHHHHHHhcCC
Confidence 999999999999999999999999865554433
No 58
>KOG2977|consensus
Probab=99.58 E-value=1.9e-14 Score=113.58 Aligned_cols=109 Identities=26% Similarity=0.244 Sum_probs=86.3
Q ss_pred ceEEEEEEeCCCchHHH----HHHHHHHhcCCC--CCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 16 STSVIICFYNEHPATLY----RSVQTLLSRTGQ--SLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~----~~l~sl~~q~~~--~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
.+|||||+||++ ..+. +|+..+...... +..+||+||||||+ |.|.+++-++..++....++++...+|.|
T Consensus 68 ~lsVIVpaynE~-~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~--d~T~~~a~k~s~K~~~d~irV~~l~~nrg 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEE-GRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGST--DSTVEVALKFSRKLGDDNIRVIKLKKNRG 144 (323)
T ss_pred eeEEEEecCCcc-cchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCc--hhHHHHHHHHHHHcCcceEEEeehhccCC
Confidence 799999999998 5544 455554433222 24589999999999 89999999999777668999999999999
Q ss_pred hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+++|...|+.+++|++++|.|+|..-.-.-++.+.+.+
T Consensus 145 KGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al 182 (323)
T KOG2977|consen 145 KGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKAL 182 (323)
T ss_pred CCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHH
Confidence 99999999999999999999999864333344444433
No 59
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.58 E-value=3.3e-14 Score=128.53 Aligned_cols=119 Identities=10% Similarity=0.098 Sum_probs=97.8
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Cc
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--RE 88 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~ 88 (214)
+..|.+||+||+|||+ ..+.+++++++ .++|++ +||++++++++ +.|.+.++++..++ ++++++.... +.
T Consensus 60 ~~~~~vsIlVPa~nE~-~vi~~~i~~ll~~ldYP~--~eI~vi~~~nD--~~T~~~~~~l~~~~--p~~~~v~~~~~g~~ 132 (727)
T PRK11234 60 PDEKPLAIMVPAWNET-GVIGNMAELAATTLDYEN--YHIFVGTYPND--PATQADVDAVCARF--PNVHKVVCARPGPT 132 (727)
T ss_pred CCCCCEEEEEecCcch-hhHHHHHHHHHHhCCCCC--eEEEEEecCCC--hhHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence 4568999999999999 99999999987 689998 79999999887 78999999999887 5666554443 78
Q ss_pred chHHHHHhhhhhc-------C--CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766 89 GLIRARMFGAKYA-------T--GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 89 G~~~a~n~g~~~a-------~--gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
|++.|.|.|+..+ + .+.+++.|+|+.++|++|. ++..+......+-+|.
T Consensus 133 gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~ 190 (727)
T PRK11234 133 SKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPV 190 (727)
T ss_pred CHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeecc
Confidence 9999999999987 3 3568889999999999998 5666655445555553
No 60
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.52 E-value=2.8e-13 Score=121.98 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=95.0
Q ss_pred CCCCceEEEEEEeCCCc----hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHH----HHHHHhhcC-CCcEEEE
Q psy1766 12 STLPSTSVIICFYNEHP----ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGE----VETFVKGLN-NGRVHLY 82 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~----~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~----~~~~~~~~~-~~~v~~i 82 (214)
...|+++|+||+|||+. ..|+.+++|+.+|.+.+. +|++|+||+++ +++... +.++.++++ ..++.+.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~-~e~~vLdD~~d--~~~~~~e~~~~~~L~~~~~~~~~i~yr 197 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAH-FDFFILSDTRD--PDIAAAEEAAWLELRAELGGEGRIFYR 197 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCC-EEEEEEECCCC--hhHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 34678999999999983 358889999998887643 89999999998 665432 445555542 2478887
Q ss_pred EcCCCcc-hHHHHHhhhhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 83 RTSKREG-LIRARMFGAKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 83 ~~~~~~G-~~~a~n~g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
+...|.| ++++.|.+++. +++||++++|+|..++++++.+++..++.++.+.++.
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQ 255 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQ 255 (691)
T ss_pred ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEe
Confidence 7666665 66677777887 5679999999999999999999999998776655553
No 61
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.43 E-value=2.8e-12 Score=115.06 Aligned_cols=121 Identities=11% Similarity=0.099 Sum_probs=94.5
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHH-hcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Cc
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--RE 88 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~-~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~ 88 (214)
...|.+||+||+|||+ +.+.+++++++ ++.|+. +||+|+....+ .+|.+.++++..++ +.++++..+. +.
T Consensus 68 ~~~~~vsIlVPa~nE~-~VI~~~v~~ll~~ldYp~--~~I~v~~~~nD--~~T~~~~~~~~~~~--p~~~~v~~~~~gp~ 140 (703)
T PRK15489 68 RDEQPLAIMVPAWKEY-DVIAKMIENMLATLDYRR--YVIFVGTYPND--AETITEVERMRRRY--KRLVRVEVPHDGPT 140 (703)
T ss_pred cCCCceEEEEeCCCcH-HHHHHHHHHHHhcCCCCC--eEEEEEecCCC--ccHHHHHHHHhccC--CcEEEEEcCCCCCC
Confidence 4567899999999999 99999999986 779987 79988643333 46788888887776 5777766543 47
Q ss_pred chHHHHHhhhhhc-------CCCE--EEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 89 GLIRARMFGAKYA-------TGKV--LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 89 G~~~a~n~g~~~a-------~gd~--i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
|++.|+|.|+..+ .++| |++.|+|+.++|+.|..+ ..+..+.+.+-.|+..
T Consensus 141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~ 200 (703)
T PRK15489 141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLS 200 (703)
T ss_pred CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeecc
Confidence 8999999999875 3344 899999999999999876 5555556666666554
No 62
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.32 E-value=2.5e-11 Score=100.43 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=88.1
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC----CC-----
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS----KR----- 87 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~----~~----- 87 (214)
+.|||.+||+. ++|.++|+||++|.+....++|+|.+||+. +++.+.++.+. ..++++.+. .+
T Consensus 2 ~PVlv~ayNRp-~~l~r~LesLl~~~p~~~~~~liIs~DG~~--~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~ 73 (334)
T cd02514 2 IPVLVIACNRP-DYLRRMLDSLLSYRPSAEKFPIIVSQDGGY--EEVADVAKSFG-----DGVTHIQHPPISIKNVNPPH 73 (334)
T ss_pred cCEEEEecCCH-HHHHHHHHHHHhccccCCCceEEEEeCCCc--hHHHHHHHhhc-----cccEEEEcccccccccCccc
Confidence 57999999999 999999999999853333379999999998 66777777763 245555532 12
Q ss_pred -----cchHH----HHHhhhhhcCCCEEEEEcCCCccCcCch---HHHHHHHhcCCCEEEEeee
Q psy1766 88 -----EGLIR----ARMFGAKYATGKVLVFLDSHIEVNTHWL---EPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 88 -----~G~~~----a~n~g~~~a~gd~i~~lD~D~~~~~~~l---~~l~~~~~~~~~~vv~~~~ 139 (214)
.+.+. |+|.++..++++++++|++|+.+.|+++ +.++..+++++.+.++...
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence 22344 8888888889999999999999999955 6777777777777666554
No 63
>KOG2547|consensus
Probab=98.94 E-value=2.4e-08 Score=82.15 Aligned_cols=121 Identities=18% Similarity=0.221 Sum_probs=105.8
Q ss_pred CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
..++|.||||.|...-. +.+...++|.+...|+. +|++++-+.++ |...+.++++.++|+....+++...+..|.
T Consensus 81 ~~~LPgVSiikPl~G~d-~nl~~Nlesffts~Y~~--~ElLfcv~s~e--DpAi~vv~~Ll~kyp~VdAklf~gG~~vg~ 155 (431)
T KOG2547|consen 81 DPKLPGVSIIKPLKGVD-PNLYHNLESFFTSQYHK--YELLFCVESSE--DPAIEVVERLLKKYPNVDAKLFFGGEKVGL 155 (431)
T ss_pred CCCCCCceEEeecccCC-chhHHhHHHHHhhccCc--eEEEEEEccCC--CcHHHHHHHHHhhCCCcceEEEEccccccc
Confidence 34899999999999999 99999999999999986 89999999999 889999999999997777788887777775
Q ss_pred HHHHH---hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 91 IRARM---FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 91 ~~a~n---~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
..-.| -|.+.|+.|+|++.|+|..+.|+.+-.|...+.++...+.+
T Consensus 156 npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalv 204 (431)
T KOG2547|consen 156 NPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALV 204 (431)
T ss_pred ChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeee
Confidence 54444 48899999999999999999999999999999876666555
No 64
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.79 E-value=3.9e-08 Score=77.31 Aligned_cols=93 Identities=24% Similarity=0.389 Sum_probs=67.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF 96 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~ 96 (214)
||||+++ |.+ ..+.+|+.+|.++..++ .|.|-|++-. ...+.+.+.|.
T Consensus 1 isiI~c~-n~~-~~~~~~~~~i~~~~~~~--~~~i~i~~~~----------------------------~~~s~~~~yN~ 48 (217)
T PF13712_consen 1 ISIIICV-NDE-ELYEECLRSIKRLIGPP--GELIEIDNVR----------------------------NAKSMAAAYNE 48 (217)
T ss_dssp EEEEEEE-S-H-HHHHHHHHHHHHTT--T--EEEEEEE-SS----------------------------S-S-TTTHHHH
T ss_pred CEEEEEE-CCH-HHHHHHHHHHHhhCCCC--ceEEEEeccC----------------------------CCcCHHHHHHH
Confidence 5666655 555 78999999998887776 5777666532 23578899999
Q ss_pred hhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766 97 GAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPIIDI 141 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~~~~ 141 (214)
|++.|+++|++|+++|..+ .++|+..+++.+++++...++++...
T Consensus 49 a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~ 94 (217)
T PF13712_consen 49 AMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGS 94 (217)
T ss_dssp HGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEE
T ss_pred HHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecC
Confidence 9999999999999999997 68999999999988888776665544
No 65
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.32 E-value=5e-06 Score=56.72 Aligned_cols=82 Identities=16% Similarity=0.009 Sum_probs=57.4
Q ss_pred eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc---h-HHHHHhhhh
Q psy1766 24 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG---L-IRARMFGAK 99 (214)
Q Consensus 24 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G---~-~~a~n~g~~ 99 (214)
+|++ ..|.+.|....+... ..++|+||||+ |+|.++++++ +.+.++....... . ...++..++
T Consensus 1 rne~-~~L~~wl~~~~~lG~----d~i~i~d~~s~--D~t~~~l~~~------~~v~i~~~~~~~~~~~~~~~~~~~~~~ 67 (97)
T PF13704_consen 1 RNEA-DYLPEWLAHHLALGV----DHIYIYDDGST--DGTREILRAL------PGVGIIRWVDPYRDERRQRAWRNALIE 67 (97)
T ss_pred CChH-HHHHHHHHHHHHcCC----CEEEEEECCCC--ccHHHHHHhC------CCcEEEEeCCCccchHHHHHHHHHHHH
Confidence 5788 899999998865543 38999999999 8999999886 3455655433222 1 223333333
Q ss_pred h-cCCCEEEEEcCCCccCcC
Q psy1766 100 Y-ATGKVLVFLDSHIEVNTH 118 (214)
Q Consensus 100 ~-a~gd~i~~lD~D~~~~~~ 118 (214)
. ..++|++++|+|..+.+.
T Consensus 68 ~~~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 68 RAFDADWVLFLDADEFLVPP 87 (97)
T ss_pred hCCCCCEEEEEeeeEEEecC
Confidence 3 478999999999987543
No 66
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=98.22 E-value=4.2e-05 Score=61.46 Aligned_cols=125 Identities=23% Similarity=0.223 Sum_probs=87.2
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEE-EEEECCCCCCCChHHHHHHHHhhcCC--------CcEEEE
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEI-ILVNDFSEYPSNLHGEVETFVKGLNN--------GRVHLY 82 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~ei-ivVdd~s~~~d~t~~~~~~~~~~~~~--------~~v~~i 82 (214)
.+.+.|-|++|..|.+ .++..-+..|...+|+.....+ ++|.|.+.- |.+.+.+++...+.+. ..|.++
T Consensus 22 ~~~e~VLILtplrna~-~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~-d~t~~~l~~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 22 RNKESVLILTPLRNAA-SFLPDYFDNLLSLTYPHELISLGFLVSDSSEF-DNTLKILEAALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred ccCCeEEEEEecCCch-HHHHHHHHHHHhCCCCchheEEEEEcCCCchh-HHHHHHHHHHHHHHhccCcccCCcceEEEE
Confidence 5667899999999999 9999999999999999976677 566666643 5677777755443211 356666
Q ss_pred EcCCC--------------------cchHHHHHhhhhhc---CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766 83 RTSKR--------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 83 ~~~~~--------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
+.+.. .-.+.|||..+..+ ..+||+++|+|..- +++.|+.|+. ....+++|.
T Consensus 100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIivPn 175 (269)
T PF03452_consen 100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIVPN 175 (269)
T ss_pred cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEccc
Confidence 54221 12478889888777 45899999999985 5565555543 344455565
Q ss_pred eeee
Q psy1766 139 IDII 142 (214)
Q Consensus 139 ~~~~ 142 (214)
+-..
T Consensus 176 ~~~~ 179 (269)
T PF03452_consen 176 CWRR 179 (269)
T ss_pred eeec
Confidence 5443
No 67
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=98.06 E-value=1.8e-05 Score=67.58 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-------
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS------- 85 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~------- 85 (214)
..+.+-|+|.++|+. .+|.+||++|++..+....+.|||..||+. ..+.+.++.+.. .+++++..
T Consensus 91 ~~~~~pVlV~AcNRp-~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~--~~~~~vi~~y~~-----~v~~i~~~~~~~i~~ 162 (434)
T PF03071_consen 91 KEPVIPVLVFACNRP-DYLRRTLDSLLKYRPSAEKFPIIVSQDGDD--EEVAEVIKSYGD-----QVTYIQHPDFSPITI 162 (434)
T ss_dssp ------EEEEESS-T-T-HHHHHHHHHHH-S-TTTS-EEEEE-TT---HHHHHHHHGGGG-----GSEEEE-S--S----
T ss_pred CCCcceEEEEecCCc-HHHHHHHHHHHHcCCCCCCccEEEEecCCc--HHHHHHHHHhhh-----hheeeecCCcCCcee
Confidence 456788999999999 999999999998765554578999999987 677777777643 23333321
Q ss_pred --CC------cchHHHHHhhhhh----cCCCEEEEEcCCCccCcCchHHHHH---HHhcCCCEEEEeeee
Q psy1766 86 --KR------EGLIRARMFGAKY----ATGKVLVFLDSHIEVNTHWLEPLLV---PIAERTNTVTVPIID 140 (214)
Q Consensus 86 --~~------~G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~~~l~~l~~---~~~~~~~~vv~~~~~ 140 (214)
.. .+.+.-.-.|+.. -..+.++++.+|..+.|++++-+.+ .+++++.+-++....
T Consensus 163 ~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN 232 (434)
T PF03071_consen 163 PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN 232 (434)
T ss_dssp -TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--
T ss_pred CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc
Confidence 11 1123322333333 2568899999999999999876554 456777776665543
No 68
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=9.6e-05 Score=58.71 Aligned_cols=121 Identities=12% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCceEEEEEEeCCC-chHH-HHHHH--HHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC--
Q psy1766 14 LPSTSVIICFYNEH-PATL-YRSVQ--TLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR-- 87 (214)
Q Consensus 14 ~p~vSVIIp~~n~~-~~~l-~~~l~--sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~-- 87 (214)
|+++++|||.--.. .+.. .+.+. +++.--.+....+||++++.+. ....++.+.... +++.++.....
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~----~d~~i~~~i~~~--~~~~yl~~~s~~~ 74 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEV----MDRLIRSYIDPM--PRVLYLDFGSPEP 74 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchh----HHHHHHHHhccc--cceEEEecCCCcc
Confidence 67899999997543 1222 22222 2122112223378888888775 336677776664 67777764322
Q ss_pred -cchHHHHHhhhhhcC----CCEEEEEcCCCccCcCchHHHHHHH-----hcCC-CEEEEeeee
Q psy1766 88 -EGLIRARMFGAKYAT----GKVLVFLDSHIEVNTHWLEPLLVPI-----AERT-NTVTVPIID 140 (214)
Q Consensus 88 -~G~~~a~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~~~~-----~~~~-~~vv~~~~~ 140 (214)
...+.++|.|+.++. +++|+|+|.|+..+.+-.++++..+ ..+- +..+.|+.-
T Consensus 75 F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~ 138 (346)
T COG4092 75 FASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYH 138 (346)
T ss_pred ccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeee
Confidence 234789999998885 8999999999999966666666443 2332 344555543
No 69
>KOG3588|consensus
Probab=97.90 E-value=0.00031 Score=58.33 Aligned_cols=124 Identities=17% Similarity=0.161 Sum_probs=88.5
Q ss_pred CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh--HHHHHHHHhhcCCCcEEEEEcCCCc
Q psy1766 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL--HGEVETFVKGLNNGRVHLYRTSKRE 88 (214)
Q Consensus 11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t--~~~~~~~~~~~~~~~v~~i~~~~~~ 88 (214)
+-+.|.|.+|+|...+. ..+.+...++....... .+++||-=|++. ++- .+.+..++.++ .++.++.....+
T Consensus 225 ~i~~pgih~i~pl~gr~-~~f~rf~q~~c~~~d~~--l~l~vv~f~~se-~e~ak~e~~tslra~f--~~~q~l~lngeF 298 (494)
T KOG3588|consen 225 LIEDPGIHMIMPLRGRA-AIFARFAQSICARGDDR--LALSVVYFGYSE-DEMAKRETITSLRASF--IPVQFLGLNGEF 298 (494)
T ss_pred cccCCCceEEEeccchH-HHhhhhhHHHhccCCCc--eEEEEEEecCCC-hHHHhhhHHHHHhhcC--CceEEecccchh
Confidence 45678899999999998 88888888887666555 466666544432 332 23555777776 777888777778
Q ss_pred chHHHHHhhhhhcCCCEE-EEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766 89 GLIRARMFGAKYATGKVL-VFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI 141 (214)
Q Consensus 89 G~~~a~n~g~~~a~gd~i-~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 141 (214)
..+.|+..|.+.-+.+.+ .|+|.|..++.++|.+.-.-.. ...-+-.|++-.
T Consensus 299 SRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt~-~gkqiyfPivFS 351 (494)
T KOG3588|consen 299 SRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNTI-LGKQIYFPIVFS 351 (494)
T ss_pred hhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHhhccC-CCceEEEEEEEe
Confidence 899999999999877655 5679999999999988644332 234455565443
No 70
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.80 E-value=0.00094 Score=58.88 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=81.7
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECC----CCCCCChHHHHHHHHhh------------------
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF----SEYPSNLHGEVETFVKG------------------ 73 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~----s~~~d~t~~~~~~~~~~------------------ 73 (214)
.+-..||+|||..+.|+++|+|+..+.|++..--|+||-|| +...-.|.+++-.....
T Consensus 26 ~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (527)
T PF03142_consen 26 FVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLGE 105 (527)
T ss_pred eEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEecc
Confidence 45568999999889999999999999998765556666664 22113467776665551
Q ss_pred ----------------cCC------------CcEEEEE----------cCCCcchHHHHHh-------------------
Q psy1766 74 ----------------LNN------------GRVHLYR----------TSKREGLIRARMF------------------- 96 (214)
Q Consensus 74 ----------------~~~------------~~v~~i~----------~~~~~G~~~a~n~------------------- 96 (214)
+.+ |-+.++. .+.|.|+--..-.
T Consensus 106 g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~~ 185 (527)
T PF03142_consen 106 GSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLEL 185 (527)
T ss_pred CchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHHH
Confidence 001 1122233 2456664221111
Q ss_pred ----------hhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEeeee
Q psy1766 97 ----------GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIID 140 (214)
Q Consensus 97 ----------g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~~~ 140 (214)
|+.....+|++.+|+|+.+.|+.+.+|+..+.+++.+ .+|+...
T Consensus 186 e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~ 240 (527)
T PF03142_consen 186 ELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETR 240 (527)
T ss_pred HHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeE
Confidence 2222245899999999999999999999999766654 5565433
No 71
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.71 E-value=0.00016 Score=55.02 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=45.1
Q ss_pred EEEEcCCCcc---hHHHHHhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 80 HLYRTSKREG---LIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 80 ~~i~~~~~~G---~~~a~n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+++..+...| +..++..|+++ +++|+++++|+|..++|++|..++..+.+....+++
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt 65 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVT 65 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEE
Confidence 3555444444 66677788898 999999999999999999999999999875554444
No 72
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.56 E-value=0.0011 Score=54.98 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=56.6
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcC-----
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTS----- 85 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~----- 85 (214)
.+.+||||+.||.+. .|+.++...+.+ +-||||-|++..|.+- .+.++.+...- ...+-++++.
T Consensus 50 ~~maIVVP~KnE~l~----lleGVL~gIPh~--C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t-~r~~~~vHQkDp~lA 122 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLK----LLEGVLSGIPHD--CLIIVVSNSSREPVDRFKMEVDLLKHFCRLT-RRQIIIVHQKDPGLA 122 (381)
T ss_dssp TTEEEEEEESS--HH----HHHHHHHCS-TT--SEEEEEE---CSSSCHHHHHHHHHHHHHHHC-T--EEEEETT-HHHH
T ss_pred hCcEEEEECCCCchh----hhhhhhhcCCCC--CeEEEEECCCCCCccHHHHHHHHHHHHHHhh-cCceEEEecCCHHHH
Confidence 468999999999943 444555555655 6899999988731121 33455555432 2456666632
Q ss_pred -----------------CCcchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766 86 -----------------KREGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 86 -----------------~~~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~ 126 (214)
-+-|++.++-.|+..| ..+||-|+|+|..++- .+.+.+..
T Consensus 123 ~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPG-aV~EYvk~ 182 (381)
T PF09488_consen 123 EAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPG-AVNEYVKD 182 (381)
T ss_dssp HHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HH-HHHHHHHH
T ss_pred HHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcc-hHHHHHHH
Confidence 1246777777777555 4699999999987653 34444443
No 73
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.40 E-value=0.0013 Score=53.72 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=87.7
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE-------cCC--
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR-------TSK-- 86 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~-------~~~-- 86 (214)
.++..|-+.||+ ..|.++|+|++... .|.||.=|.|+ |+|.+++.+++.++++ -+.+.. +++
T Consensus 88 ~~~~~iRvKnE~-~tl~~si~S~Lpai-----~~gVI~yNdc~--D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~~~~ 158 (347)
T PF06306_consen 88 NPWAFIRVKNEA-MTLAESIESILPAI-----DEGVIGYNDCT--DGTEEIILEFCKKYPS-FIPIKYPYEVIIKNPKSE 158 (347)
T ss_pred CcceEEEEcchh-hhHHHHHHHHHHHH-----hccEEEeecCC--CCHHHHHHHHHHhCcc-cccccCcchhhccCCchh
Confidence 589999999999 99999999998654 48888888888 8999999999999832 222211 111
Q ss_pred CcchHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeeee
Q psy1766 87 REGLIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII 142 (214)
Q Consensus 87 ~~G~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 142 (214)
.-....-.|.++... +.+|++=+|+|-...+.-|-...-...+..+++..+.++..
T Consensus 159 ~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~pk~~~~~v~YsRINF~ 215 (347)
T PF06306_consen 159 ENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIPKNDYDVVSYSRINFH 215 (347)
T ss_pred hhhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhheeeccccceEEecceeEE
Confidence 112344566677664 68999999999999887765544444677788888888864
No 74
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.38 E-value=0.0019 Score=56.27 Aligned_cols=121 Identities=15% Similarity=0.206 Sum_probs=74.4
Q ss_pred ceEEEEEEeCCC----chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHH---HHHHHhhcC-CCcEEEEEcCCC
Q psy1766 16 STSVIICFYNEH----PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGE---VETFVKGLN-NGRVHLYRTSKR 87 (214)
Q Consensus 16 ~vSVIIp~~n~~----~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~---~~~~~~~~~-~~~v~~i~~~~~ 87 (214)
...|++|+|||. ...|+.+-+|+.+. .....|++.|+-|..+. |-.... ...++.+.+ ..+|-|-+..+|
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~T-g~~~~FD~FVLSDs~dp-dialAEq~a~~~l~~e~~g~~~ifYRrRr~n 222 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAAT-GHAEHFDFFVLSDSRDP-DIALAEQKAWAELCRELGGEGNIFYRRRRRN 222 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhh-CCcccceEEEEcCCCCc-hhhhhHHHHHHHHHHHhCCCCceeeehHhhh
Confidence 589999999998 34555666666543 33333888888887651 222111 122333331 145555444444
Q ss_pred cchHHHHHhh--hhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 88 EGLIRARMFG--AKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 88 ~G~~~a~n~g--~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
.+.- +=|.+ .+. ..++|.+++|+|.....+.+.++++.++.+++..+....
T Consensus 223 ~~RK-aGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~ 277 (736)
T COG2943 223 VKRK-AGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTS 277 (736)
T ss_pred hccc-ccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecc
Confidence 4321 11111 111 246899999999999999999999999999887665443
No 75
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.35 E-value=0.003 Score=52.50 Aligned_cols=104 Identities=14% Similarity=0.167 Sum_probs=62.9
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR--- 87 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~--- 87 (214)
-+..||||+.||.+.. |+.++...+.+ +-||||-|++..|.+. .+.++.+..-- ...+-++++ ++
T Consensus 51 ~~mAIVVP~KdE~l~l----leGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t-~r~~i~vHQ-kDp~l 122 (393)
T PRK14503 51 GRMAIVVPVKNERLKL----LEGVLKGIPHE--CPIIVVSNSKREPPDRFKLEVDLVRHFYRLT-QRPIIIVHQ-KDPGL 122 (393)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCCchHHHHHHHHHHHHHhhh-cCceEEEEc-CCHHH
Confidence 3689999999999544 44444444555 6888888886521111 22344444321 235555553 23
Q ss_pred --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
-|++.++-.|+..| ..+||-|+|+|..++- .+.+.+..+
T Consensus 123 a~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-aV~EYvk~y 184 (393)
T PRK14503 123 AEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-AVNEYVKIY 184 (393)
T ss_pred HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-hHHHHHHHH
Confidence 35666666666554 4599999999998754 344444444
No 76
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.35 E-value=0.0032 Score=52.07 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=63.3
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR--- 87 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~--- 87 (214)
-+..||||+.||.+.. |+.++...+.+ +-||||-|++..|.+. .+.++.+..-. ...+-++++ ++
T Consensus 50 ~~maIVVP~KdE~l~l----leGVL~gIPh~--c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQ-kDp~l 121 (381)
T TIGR02460 50 GKTAIVVPVKNEKLHL----LEGVLSGIPHE--CPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQ-KDPAL 121 (381)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEc-CCHHH
Confidence 3689999999999544 44444444555 6888888887621111 22344444321 235555553 22
Q ss_pred --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
-|++.++-.|+..| ..+||-|+|+|..++- .+.+.+..+
T Consensus 122 a~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-aV~EYvk~y 183 (381)
T TIGR02460 122 AEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-AVNEYVKIY 183 (381)
T ss_pred HHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-hHHHHHHHH
Confidence 35666666676555 4599999999998754 344444444
No 77
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.34 E-value=0.0052 Score=54.35 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=86.2
Q ss_pred CCCCceEEEEEEeCC-CchHHHHHHHHHHh---cCCCCCccEEEEEECCC-CCCCC---hHHHHHHHHhhcCCCcEEEEE
Q psy1766 12 STLPSTSVIICFYNE-HPATLYRSVQTLLS---RTGQSLLHEIILVNDFS-EYPSN---LHGEVETFVKGLNNGRVHLYR 83 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~-~~~~l~~~l~sl~~---q~~~~~~~eiivVdd~s-~~~d~---t~~~~~~~~~~~~~~~v~~i~ 83 (214)
.+-..|.||||..++ . +.+.+-|+...+ ++... ..++||..++ .+.+. +.+.++++..+++..++.++.
T Consensus 244 ~~~~~V~iIvPl~~r~~-~~~~~Fl~~~~~~~l~~~~~--~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~ 320 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREA-DWFRRFLENFEKVCLETDDN--VFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWIS 320 (499)
T ss_pred cCCCEEEEEEEecCccH-HHHHHHHHHHHHHhcccCCc--eEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEE
Confidence 344689999999999 5 666665555432 33322 3555555544 31011 234777888887667899999
Q ss_pred cC-CCcchHHHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 84 TS-KREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 84 ~~-~~~G~~~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
.. .++..+.|+..|++... .++++|+|.|..+++++|.+.-.....+ .-|-.|++-
T Consensus 321 ~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g-~qvy~PI~F 378 (499)
T PF05679_consen 321 VKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIPG-KQVYFPIVF 378 (499)
T ss_pred ecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhcC-cEEEEeeec
Confidence 87 88899999999998664 5678888999999999999986655433 345556543
No 78
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=97.30 E-value=0.0028 Score=50.35 Aligned_cols=89 Identities=11% Similarity=0.088 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCCCCccEEEEE-ECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc---CCCEEE-
Q psy1766 33 RSVQTLLSRTGQSLLHEIILV-NDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKVLV- 107 (214)
Q Consensus 33 ~~l~sl~~q~~~~~~~eiivV-dd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a---~gd~i~- 107 (214)
-||.||.+|+.++ |.++|+ ++... +...+.++++.+.+ +.++++..+. .....+...+++.+ .+++++
T Consensus 46 ~~LpSl~~QTd~d--F~~lv~~~~~~P--~~~~~rL~~l~~~~--p~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (234)
T PF11316_consen 46 YCLPSLRAQTDQD--FTWLVLFDDDLP--EPYRERLRDLLADY--PQFRIVFRPP-GPHRDAMRRAINAARRDGADPVLQ 118 (234)
T ss_pred HHhhHHHhccCCC--eEEEEEECCCCC--HHHHHHHHHHhccC--CCcEEEecCC-chHHHHHHHHHhhhccCCCCEEEE
Confidence 3899999999998 788875 44554 66788888988876 5676766443 33455555555332 456554
Q ss_pred -EEcCCCccCcCchHHHHHHHh
Q psy1766 108 -FLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 108 -~lD~D~~~~~~~l~~l~~~~~ 128 (214)
-+|+|+.+..++++.+.+...
T Consensus 119 ~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 119 FRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred EEECCcchhhHHHHHHHHHHHH
Confidence 469999999999999998873
No 79
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=97.10 E-value=0.0036 Score=49.00 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=63.7
Q ss_pred CceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCC---
Q psy1766 15 PSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKR--- 87 (214)
Q Consensus 15 p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~--- 87 (214)
|.|-||.|+|.+. ...|.+.-+.|.. .. + .-.|||+|+....+.+.+++++ .++.+.+. +.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~l-Vp-~--l~WIVVEd~~~~t~~va~lL~~-------sgl~y~HL~~~~~~~~ 69 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRL-VP-P--LHWIVVEDSEEKTPLVAELLRR-------SGLMYTHLNAKTPSDP 69 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhc-CC-c--eEEEEEeCCCCCCHHHHHHHHH-------cCCceEEeccCCCCCc
Confidence 4678999999987 3455555555433 33 4 5999999998311344444444 24444333 222
Q ss_pred ----cchHHHHHhhhhhcC-------CCEEEEEcCCCccCcCchHHHH
Q psy1766 88 ----EGLIRARMFGAKYAT-------GKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 88 ----~G~~~a~n~g~~~a~-------gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
.-....||.|++..+ .-+|.|.|+|..++-..+++|-
T Consensus 70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 113567999997753 2578899999999988888854
No 80
>PLN02458 transferase, transferring glycosyl groups
Probab=96.86 E-value=0.0059 Score=50.20 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=64.0
Q ss_pred CCceEEEEEEeC-CC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCc
Q psy1766 14 LPSTSVIICFYN-EH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKRE 88 (214)
Q Consensus 14 ~p~vSVIIp~~n-~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~ 88 (214)
.+.|-||.|+|. +. ...|.+.-+.| ....++ .-.|||+|+... ..+.+++++ .++.+.+. +.+.
T Consensus 111 ~rlIivVTPTY~rR~~Q~a~LTRLahTL-~lVp~p--L~WIVVEd~~~t-~~va~lLrr-------sGl~y~HL~~k~~~ 179 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQGVLLRRLANTL-RLVPPP--LLWIVVEGQSDS-EEVSEMLRK-------TGIMYRHLVFKENF 179 (346)
T ss_pred CceEEEECCCCCCcchhHHHHHHHHHHH-hcCCCC--ceEEEEeCCCCC-HHHHHHHHH-------cCCceEEeccCCCC
Confidence 356899999998 33 34455444444 344445 489999988763 344444444 24444333 3332
Q ss_pred -----chHHHHHhhhhhcC----CCEEEEEcCCCccCcCchHHHH
Q psy1766 89 -----GLIRARMFGAKYAT----GKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 89 -----G~~~a~n~g~~~a~----gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
.....||.|++..+ .-+|.|.|+|..++-+.++++-
T Consensus 180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 12466999998874 3688999999999888887754
No 81
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.83 E-value=0.0073 Score=43.49 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=46.2
Q ss_pred ceEEEEEEeCCCchHHHHHHHH---HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQT---LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
+++||||.+|++ +.|...|.. +++...-. +.|+||+...+ ..+..|.
T Consensus 48 kvAiIIPyRdR~-~hL~~fl~~l~~~L~rQ~~~--y~I~vieQ~~~---------------------------~~FNRg~ 97 (136)
T PF13733_consen 48 KVAIIIPYRDRE-EHLRIFLPHLHPFLQRQQLD--YRIFVIEQVDN---------------------------GPFNRGK 97 (136)
T ss_dssp EEEEEEEESS-H-HHHHHHHHHHHHHHHHTT-E--EEEEEEEE-SS---------------------------S---HHH
T ss_pred ceEEEEEeCCHH-HHHHHHHHHHHHHHhhCcce--EEEEEEeeccC---------------------------CCCchhh
Confidence 899999999999 777666654 34332223 79999988754 1234556
Q ss_pred HHHhhhhhc----CCCEEEEEcCCCccCcC
Q psy1766 93 ARMFGAKYA----TGKVLVFLDSHIEVNTH 118 (214)
Q Consensus 93 a~n~g~~~a----~gd~i~~lD~D~~~~~~ 118 (214)
-+|.|...| ..|+++|-|-|..+..+
T Consensus 98 L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 98 LMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 677776665 45899999999887554
No 82
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=96.80 E-value=0.0035 Score=50.31 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=68.6
Q ss_pred eEEEEEE-eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 17 TSVIICF-YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 17 vSVIIp~-~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
+||||.+ |.+. +.|.+.|.++.+...- .||+||=++... .... ...... ...|+++..+.| .-..|-
T Consensus 1 fTvvi~t~~~R~-~~L~~~l~~l~~~~~l---~~IvVvWn~~~~---~P~~-~~~~~~--~vpV~~~~~~~n--sLnnRF 68 (247)
T PF09258_consen 1 FTVVINTSYKRS-DLLKRLLRHLASSPSL---RKIVVVWNNPNP---PPPS-SKWPST--GVPVRVVRSSRN--SLNNRF 68 (247)
T ss_dssp EEEEEEE-SS-H-HHHHHHHHHHTTSTTE---EEEEEEEE-TS-----THH-HHHT-----S-EEEEEESSH--HGGGGG
T ss_pred CEEEEEecccch-HHHHHHHHHHHcCCCC---CeEEEEeCCCCC---CCcc-cccCCC--CceEEEEecCCc--cHHhcC
Confidence 4899999 9998 9999999998444332 589998666431 1111 111111 257888875432 112333
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
.-....+++-|+.+|+|..++.+.|+...+...+.++-+|+
T Consensus 69 ~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVG 109 (247)
T PF09258_consen 69 LPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVG 109 (247)
T ss_dssp S--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEE
T ss_pred cCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeC
Confidence 44456689999999999999999999999999888877665
No 83
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.71 E-value=0.019 Score=52.10 Aligned_cols=104 Identities=12% Similarity=0.149 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh----HHHHHHHHhhcCCCcEEEEEcCCC---
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL----HGEVETFVKGLNNGRVHLYRTSKR--- 87 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t----~~~~~~~~~~~~~~~v~~i~~~~~--- 87 (214)
-+..||||+.||.+.. |+.++...+.+ +-||||-|++..|.+. .+.++.+..-- ...+-++++ +.
T Consensus 55 ~~~aivvp~k~e~~~~----~~gvl~~ip~~--c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~-~~~~~~vhq-~dp~~ 126 (694)
T PRK14502 55 KKMAIVLPIKDEDLKV----FEGVLSGIPHD--CLMIVISNSSKQEVDNFKNEKDIVNRFCRIT-HRQAIVVHQ-KNPEL 126 (694)
T ss_pred hCcEEEEEcCCCchhH----HhhHhhcCCCC--CeEEEEeCCCCCchHHHHHHHHHHHHHHHhh-cCceEEEEc-CCHHH
Confidence 3689999999999544 44445444555 6888888887621111 22344444321 234555553 22
Q ss_pred --------------------cchHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 88 --------------------EGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 88 --------------------~G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
-|++.++-.|+..| ..+||-|+|+|..++-. +.+.+..+
T Consensus 127 a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~y 188 (694)
T PRK14502 127 ANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHF 188 (694)
T ss_pred HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHH
Confidence 36666777776555 45999999999987644 44444444
No 84
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=96.61 E-value=0.0054 Score=50.47 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=69.0
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-----------
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----------- 84 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----------- 84 (214)
.+.||||+-...+....+.-+.++ .. |.+|||-|+.. .+..++.+-+ ...++..
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~----~~--~hliiv~d~~~--~~~~~~p~g~-------~~~~y~~~di~~~lg~~~ 73 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFF----SP--YHLIIVQDPDP--NEEIKVPEGF-------DYEVYNRNDIERVLGAKT 73 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhh----cc--eeEEEEeCCCc--cccccCCccc-------ceeeecHhhHHhhcCCcc
Confidence 588999998766334444444543 23 68999988865 3332222211 1112111
Q ss_pred CCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 85 SKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 85 ~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.-.+...++||.|.-.++.+|++++|+|+.+..+..-..++.+.++.....+|
T Consensus 74 ~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 74 LIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP 126 (348)
T ss_pred cccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence 11223467899999999999999999999998888877777776665555544
No 85
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.55 E-value=0.031 Score=42.12 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=66.0
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcC-
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYAT- 102 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~- 102 (214)
+.. ..+..+++.+.... . .+|+||-+... . ........ ..+.++..+ ...|...+...|++.+.
T Consensus 24 ~g~-~li~~~i~~l~~~~-~---~~i~vv~~~~~--~----~~~~~~~~---~~~~~~~~~~~~~G~~~~i~~al~~~~~ 89 (186)
T cd04182 24 DGK-PLLRHALDAALAAG-L---SRVIVVLGAEA--D----AVRAALAG---LPVVVVINPDWEEGMSSSLAAGLEALPA 89 (186)
T ss_pred CCe-eHHHHHHHHHHhCC-C---CcEEEECCCcH--H----HHHHHhcC---CCeEEEeCCChhhCHHHHHHHHHHhccc
Confidence 344 67777888776542 2 26766644322 1 12222222 245555433 34688889999999886
Q ss_pred -CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeee
Q psy1766 103 -GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPII 139 (214)
Q Consensus 103 -gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~ 139 (214)
.++++++.+|.. ++++.+..+++.+.++...+++|..
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~~~ 128 (186)
T cd04182 90 DADAVLILLADQPLVTAETLRALIDAFREDGAGIVAPVY 128 (186)
T ss_pred cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEEec
Confidence 799999999985 6889999999988765666666643
No 86
>KOG1476|consensus
Probab=96.47 E-value=0.039 Score=45.13 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCceEEEEEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch-
Q psy1766 14 LPSTSVIICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL- 90 (214)
Q Consensus 14 ~p~vSVIIp~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~- 90 (214)
.|.|-||.|+|.+. ...|.+.-.+| .+.. + -..|||+||+.....+..++++- +-..+++..+...+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL-~~V~-n--LhWIVVEd~~~~~p~v~~~L~rt-----gl~ythl~~~t~~~~~ 156 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTL-RLVP-N--LHWIVVEDGEGTTPEVSGILRRT-----GLPYTHLVHKTPMGYK 156 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHH-hhcC-C--eeEEEEecCCCCCHHHHHHHHHc-----CCceEEEeccCCCCCc
Confidence 57899999999987 33444433333 3444 5 48999999953113444454442 223334443444442
Q ss_pred ----HHHHHhhhhhcC---------CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 91 ----IRARMFGAKYAT---------GKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 91 ----~~a~n~g~~~a~---------gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
-..||.|+++.+ .-+|.|-|+|..++-+.+++ ++..
T Consensus 157 ~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 157 ARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV 205 (330)
T ss_pred cccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence 468999987765 35788889999999888888 4444
No 87
>PLN02893 Cellulose synthase-like protein
Probab=96.38 E-value=0.067 Score=49.07 Aligned_cols=47 Identities=19% Similarity=0.332 Sum_probs=40.6
Q ss_pred CCCCceEEEEEE---eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCC
Q psy1766 12 STLPSTSVIICF---YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSE 58 (214)
Q Consensus 12 ~~~p~vSVIIp~---~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~ 58 (214)
+++|.|.|.|++ +.|+.-....++-|+++-+||..+.-+.|.|||.+
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs 147 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGS 147 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCcc
Confidence 469999999999 55555678889999999999988888999999986
No 88
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.38 E-value=0.083 Score=40.41 Aligned_cols=90 Identities=11% Similarity=0.101 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--CcchHHHHHhhhhhcCCCEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVL 106 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~~~a~n~g~~~a~gd~i 106 (214)
..|..+++.+. ..- .+|+||-+... +.+.. ..++++.... ..|...+...|++..+.+++
T Consensus 31 ~ll~~~i~~l~--~~~---~~i~vv~~~~~------~~~~~-------~~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~v 92 (193)
T PRK00317 31 PLIQHVIERLA--PQV---DEIVINANRNL------ARYAA-------FGLPVIPDSLADFPGPLAGILAGLKQARTEWV 92 (193)
T ss_pred EHHHHHHHHHh--hhC---CEEEEECCCCh------HHHHh-------cCCcEEeCCCCCCCCCHHHHHHHHHhcCCCeE
Confidence 56777777765 222 37777733211 11211 1344454322 36777888889988888999
Q ss_pred EEEcCCCc-cCcCchHHHHHHHhcCCCEEEE
Q psy1766 107 VFLDSHIE-VNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 107 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+++++|.. ++++.++.+++.+.+....+++
T Consensus 93 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 123 (193)
T PRK00317 93 LVVPCDTPFIPPDLVARLAQAAGKDDADVAW 123 (193)
T ss_pred EEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence 99999995 5899999999987555444443
No 89
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.25 E-value=0.072 Score=39.26 Aligned_cols=100 Identities=12% Similarity=0.218 Sum_probs=70.0
Q ss_pred EEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhh
Q psy1766 21 ICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAK 99 (214)
Q Consensus 21 Ip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~ 99 (214)
++. +.. ..+..+++.+.+... . +|+|+-... .+.+.... .+++++..+ ...|...+.-.|+.
T Consensus 19 ~~i-~g~-~li~~~l~~l~~~~~-~---~Ivvv~~~~--------~~~~~~~~---~~~~~v~~~~~~~G~~~sl~~a~~ 81 (160)
T PF12804_consen 19 LPI-GGK-PLIERVLEALREAGV-D---DIVVVTGEE--------EIYEYLER---YGIKVVVDPEPGQGPLASLLAALS 81 (160)
T ss_dssp SEE-TTE-EHHHHHHHHHHHHTE-S---EEEEEESTH--------HHHHHHTT---TTSEEEE-STSSCSHHHHHHHHHH
T ss_pred eeE-CCc-cHHHHHHHHhhccCC-c---eEEEecChH--------HHHHHHhc---cCceEEEeccccCChHHHHHHHHH
Confidence 344 555 677888887765542 2 788876652 22222333 367777754 46899999999999
Q ss_pred hc-CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766 100 YA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 100 ~a-~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.. ..+.++++..|.. ++++.+..+++.+.+.+..++++
T Consensus 82 ~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~ 121 (160)
T PF12804_consen 82 QLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVP 121 (160)
T ss_dssp TSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEE
T ss_pred hcccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEE
Confidence 98 8999999999995 59999999999997654444443
No 90
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.20 E-value=0.11 Score=39.28 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-CcchHHHHHhhhh-hcCCCEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-REGLIRARMFGAK-YATGKVL 106 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-~~G~~~a~n~g~~-~a~gd~i 106 (214)
..+...++.+.+.. . .+|+||-+... .+..+.+... .++.++.... ..|...+...|++ ....+++
T Consensus 26 pll~~~i~~l~~~~-~---~~iivv~~~~~-----~~~~~~~~~~---~~v~~v~~~~~~~g~~~si~~~l~~~~~~~~v 93 (188)
T TIGR03310 26 TILEHVVDNALRLF-F---DEVILVLGHEA-----DELVALLANH---SNITLVHNPQYAEGQSSSIKLGLELPVQSDGY 93 (188)
T ss_pred eHHHHHHHHHHHcC-C---CcEEEEeCCcH-----HHHHHHhccC---CCeEEEECcChhcCHHHHHHHHhcCCCCCCEE
Confidence 67888887776543 2 26766644332 1233333322 3566666432 3577888888887 4567899
Q ss_pred EEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766 107 VFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 107 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
+++++|.. ++++.++.+++.+.++...+++|.
T Consensus 94 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~ 126 (188)
T TIGR03310 94 LFLLGDQPFVTPDIIQLLLEAFALKNDEIVVPL 126 (188)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEee
Confidence 99999985 688999999988766666566654
No 91
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=96.15 E-value=0.028 Score=44.14 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=52.1
Q ss_pred ceEEEEEEeCCCchHHHHHHHHH---HhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQTL---LSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl---~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
+++||||.+++. +.|...|..+ ++...-. +.|+||+.... ..+..+.
T Consensus 3 ~~aiivpyr~R~-~~l~~~l~~~~~~L~rq~~~--~~i~vi~Q~~~---------------------------~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRF-EHLLIFLPHLHPFLQRQQLD--YRIFVIEQVGN---------------------------FRFNRAK 52 (219)
T ss_pred ceEEEEecCCHH-HHHHHHHHHHHHHHHhcCCc--EEEEEEEecCC---------------------------ccchhhh
Confidence 689999999999 7776666554 3332222 57777765432 1334566
Q ss_pred HHHhhhhhc----CCCEEEEEcCCCccCcCchH
Q psy1766 93 ARMFGAKYA----TGKVLVFLDSHIEVNTHWLE 121 (214)
Q Consensus 93 a~n~g~~~a----~gd~i~~lD~D~~~~~~~l~ 121 (214)
.+|.|...| ..++++|-|.|..+..+.+.
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~ 85 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNL 85 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCcccc
Confidence 777776665 36899999999998877754
No 92
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=96.13 E-value=0.044 Score=45.13 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCceEEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEE-EEEECCCCCCCChHHHHHHHHhhc----CCCcEEEEEcCCC
Q psy1766 14 LPSTSVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEI-ILVNDFSEYPSNLHGEVETFVKGL----NNGRVHLYRTSKR 87 (214)
Q Consensus 14 ~p~vSVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~ei-ivVdd~s~~~d~t~~~~~~~~~~~----~~~~v~~i~~~~~ 87 (214)
-++++|=||+-.++ -.+|..+|.||+....+...-++ |||-=+.++|+......+.+..++ ....+.+|..+..
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 34599999997654 48999999999987766432223 233222222133444444443322 1234455443221
Q ss_pred --------------------------cchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 88 --------------------------EGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 88 --------------------------~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
...+..++.+. ..|+|.+.|.+|....++|+..+...+..-
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~--~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQ--NLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHH--hcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 12222233222 268999999999999999999999988543
No 93
>KOG1413|consensus
Probab=96.06 E-value=0.069 Score=44.46 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=83.9
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC----C----CcEEEEE
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN----N----GRVHLYR 83 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~----~----~~v~~i~ 83 (214)
..+|.+.||+-+.|+. +.|++++..|+.+.+....+-|||.-||.. ..+.+.+..+..... . ..|.+-.
T Consensus 64 ~~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~--e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~ 140 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEK--EAVKKKLLSYGSDVSHIQHPMHLKDEISVPP 140 (411)
T ss_pred CCCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCc--HHHHHHHHHhccchhhhcCccccccccccCC
Confidence 4567789999999998 999999999999987777788899888887 677777777654320 0 0111111
Q ss_pred c-CCCcc-------hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHH---HhcCCCEEEE
Q psy1766 84 T-SKREG-------LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVP---IAERTNTVTV 136 (214)
Q Consensus 84 ~-~~~~G-------~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~---~~~~~~~vv~ 136 (214)
. .+..+ ...|.|..+...+.+.++.+.+|.-+.|+|++.+... ++.++.+-++
T Consensus 141 ~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcv 204 (411)
T KOG1413|consen 141 RHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCV 204 (411)
T ss_pred cccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEe
Confidence 1 11111 2335555555557899999999999999998776654 3555555544
No 94
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=96.04 E-value=0.0045 Score=47.18 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.0
Q ss_pred EEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766 105 VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 105 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
||+++|+|+.+++++++++++.++++...++.+.
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~ 34 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGP 34 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEcc
Confidence 6899999999999999999999984334444333
No 95
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=95.98 E-value=0.18 Score=38.43 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=64.9
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhc--
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYA-- 101 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a-- 101 (214)
+.. ..|..+++.+++.. . .+|+||-+... ...+.+.+.... ..++.++.++ ...|...+.-.|++++
T Consensus 24 ~g~-~ll~~~i~~~~~~~-~---~~i~vv~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~G~~~si~~gl~~~~~ 93 (190)
T TIGR03202 24 GET-TLGSASLKTALSSR-L---SKVIVVIGEKY---AHLSWLDPYLLA--DERIMLVCCRDACEGQAHSLKCGLRKAEA 93 (190)
T ss_pred CCc-cHHHHHHHHHHhCC-C---CcEEEEeCCcc---chhhhhhHhhhc--CCCeEEEECCChhhhHHHHHHHHHHHhcc
Confidence 445 67788887765432 2 37777775433 222222222111 1345555433 3457888888898876
Q ss_pred -CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766 102 -TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 102 -~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
..++++++++|.. ++++.+..+++.+.+.+..++++
T Consensus 94 ~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~ 131 (190)
T TIGR03202 94 MGADAVVILLADQPFLTADVINALLALAKRRPDDYVAA 131 (190)
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 4799999999988 58899999999886655444444
No 96
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=95.94 E-value=0.23 Score=39.70 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=67.1
Q ss_pred EEEEEeCCCchHHHH----HHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCC---C--
Q psy1766 19 VIICFYNEHPATLYR----SVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSK---R-- 87 (214)
Q Consensus 19 VIIp~~n~~~~~l~~----~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~---~-- 87 (214)
|..-.||.+ +.|.. .|-.++..-.+.. .-|-|+++||. |.|.+.++.+..... +.+-.+...+. .
T Consensus 4 IA~~l~~~~-~iL~~~~~~~ll~li~~LGp~n-v~vSIyE~~S~--D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~ 79 (241)
T PF11735_consen 4 IAANLYNNE-DILPSLWGDALLELIRFLGPEN-VFVSIYESGSW--DGTKEALRALDAELDALGVPHSIVLSDITHRDEI 79 (241)
T ss_pred EEEEcccCH-hHHHHHHHHHHHHHHHHhCcCe-EEEEEEeCCCC--ccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccc
Confidence 444557666 44443 3444444444432 56778999999 899999998874321 22222222111 1
Q ss_pred ---------cchHHHHHhhhhhc---------CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 88 ---------EGLIRARMFGAKYA---------TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 88 ---------~G~~~a~n~g~~~a---------~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
.-.+.-||.|++-- .-+-|+|++ |..+.+.-+-+++..-..+...++|
T Consensus 80 ~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aC 145 (241)
T PF11735_consen 80 ERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMAC 145 (241)
T ss_pred cccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchh
Confidence 11368899998532 236799998 7788777676666665533444444
No 97
>KOG3916|consensus
Probab=95.78 E-value=0.057 Score=44.73 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=49.2
Q ss_pred ceEEEEEEeCCCchHHHHHHHH---HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQT---LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~s---l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
+|.||||.+|++ +.|...|.- ++++..-+ |-|+||+...++ .+..+.
T Consensus 152 kvAIIIPfR~Re-~HL~~~l~~LhP~LqrQrL~--y~iyVieQ~g~~---------------------------~FNRak 201 (372)
T KOG3916|consen 152 KVAIIIPFRNRE-EHLRYLLHHLHPFLQRQRLD--YRIYVIEQAGNK---------------------------PFNRAK 201 (372)
T ss_pred eeEEEeecccHH-HHHHHHHHHhhHHHHhhhhc--eeEEEEEecCCC---------------------------cccHHH
Confidence 799999999999 666655544 44443333 688888776541 233455
Q ss_pred HHHhhhhhc----CCCEEEEEcCCCccCcC
Q psy1766 93 ARMFGAKYA----TGKVLVFLDSHIEVNTH 118 (214)
Q Consensus 93 a~n~g~~~a----~gd~i~~lD~D~~~~~~ 118 (214)
-+|.|...| .-|.++|-|-|..+..+
T Consensus 202 L~NVGf~eAlkd~~wdCfIFHDVDllPenD 231 (372)
T KOG3916|consen 202 LLNVGFLEALKDYGWDCFIFHDVDLLPEND 231 (372)
T ss_pred hhhhHHHHHHHhcCCCEEEEecccccccCC
Confidence 667666555 45789999999877544
No 98
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=95.72 E-value=0.42 Score=40.30 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=78.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCCh-HH----------------HHHHHHhh------
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL-HG----------------EVETFVKG------ 73 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t-~~----------------~~~~~~~~------ 73 (214)
|=|.|.+|-.. .+..||.+++++...+...-|=|++..... +.. .. ....+...
T Consensus 2 IFvsiasyRD~--~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~-~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 78 (343)
T PF11397_consen 2 IFVSIASYRDP--ECAPTLKDLFARATNPERLFVGVVWQHYEE-DPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEW 78 (343)
T ss_pred EEEEEeeecCc--hHHHHHHHHHHhcCCCceEEEEEEEEecCC-CCcccccccccccccccccccchhhhhhhccccccc
Confidence 55788888775 588999999887766544556666654432 222 10 01111110
Q ss_pred ------cCCCcEEEEEc--CCCcchHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc--CCCEEEE
Q psy1766 74 ------LNNGRVHLYRT--SKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE--RTNTVTV 136 (214)
Q Consensus 74 ------~~~~~v~~i~~--~~~~G~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~vv~ 136 (214)
....+|++++. ....|.+.||+.+.+.-+| +|++-+|+...+.++|=+.+++.++. ++..|+.
T Consensus 79 ~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS 152 (343)
T PF11397_consen 79 PDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLS 152 (343)
T ss_pred ccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEe
Confidence 11246666654 4568999999999988876 79999999999999999999888753 4444444
No 99
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=95.70 E-value=0.25 Score=38.61 Aligned_cols=98 Identities=12% Similarity=0.060 Sum_probs=65.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
++|.-+ . ..+..+|+++.+... .+++||-... .+.+.++..+ .+++++..+...|.+.+.-.|+.
T Consensus 20 l~~v~g-k-pli~~~i~~l~~~~i----~~i~iv~~~~------~~~i~~~~~~---~~~~~~~~~~~~g~~~ai~~a~~ 84 (229)
T cd02540 20 LHPLAG-K-PMLEHVLDAARALGP----DRIVVVVGHG------AEQVKKALAN---PNVEFVLQEEQLGTGHAVKQALP 84 (229)
T ss_pred cceeCC-c-cHHHHHHHHHHhCCC----CeEEEEECCC------HHHHHHHhCC---CCcEEEECCCCCCCHHHHHHHHH
Confidence 445544 4 688888888876442 2666555321 2234444333 35677776666788888888888
Q ss_pred hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766 100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~ 132 (214)
... .+.++++++|. .+.+..+..+++.+.+...
T Consensus 85 ~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~ 120 (229)
T cd02540 85 ALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGA 120 (229)
T ss_pred hhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence 765 68999999998 4678889998888765433
No 100
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=95.43 E-value=0.17 Score=38.13 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCC
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATG 103 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~g 103 (214)
+.. ..|..+++.+... . .+|+||-+... .. . .. .+++++... ...|...+...|++....
T Consensus 24 ~g~-~ll~~~i~~l~~~--~---~~iivv~~~~~--~~----~----~~---~~~~~v~~~~~~~G~~~si~~~l~~~~~ 84 (181)
T cd02503 24 GGK-PLLEHVLERLKPL--V---DEVVISANRDQ--ER----Y----AL---LGVPVIPDEPPGKGPLAGILAALRAAPA 84 (181)
T ss_pred CCE-EHHHHHHHHHHhh--c---CEEEEECCCCh--HH----H----hh---cCCcEeeCCCCCCCCHHHHHHHHHhcCC
Confidence 344 6777777777543 2 27777755433 11 1 11 245666543 367888999999999889
Q ss_pred CEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766 104 KVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
++++++.+|.. ++++.+..+++.+ .....+++|
T Consensus 85 ~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 85 DWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred CeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 99999999996 5899999999887 333344444
No 101
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=0.47 Score=38.43 Aligned_cols=99 Identities=15% Similarity=0.261 Sum_probs=66.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
++|+|+.+ -+.-+|..+...--. +|+||-.--+. +...+.+-. -.++ +.+++|..+++..|.+.|.-.|-.
T Consensus 25 LlpV~~KP--mi~y~l~~L~~aGI~----dI~II~~~~~~-~~~~~llGd-gs~~-gv~itY~~Q~~p~GlA~Av~~a~~ 95 (286)
T COG1209 25 LLPVYDKP--MIYYPLETLMLAGIR----DILIVVGPEDK-PTFKELLGD-GSDF-GVDITYAVQPEPDGLAHAVLIAED 95 (286)
T ss_pred cceecCcc--hhHhHHHHHHHcCCc----eEEEEecCCch-hhhhhhhcC-cccc-CcceEEEecCCCCcHHHHHHHHHh
Confidence 68999985 777788887765543 67666554321 222222211 1122 468999999999999999999999
Q ss_pred hcC-CCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 100 YAT-GKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 100 ~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
... .++++++. |..+.. -+++++..+.+
T Consensus 96 fv~~~~f~l~LG-DNi~~~-~l~~~~~~~~~ 124 (286)
T COG1209 96 FVGDDDFVLYLG-DNIFQD-GLSELLEHFAE 124 (286)
T ss_pred hcCCCceEEEec-Cceecc-ChHHHHHHHhc
Confidence 997 56666665 455544 68888887755
No 102
>PLN02917 CMP-KDO synthetase
Probab=95.40 E-value=0.34 Score=39.90 Aligned_cols=109 Identities=13% Similarity=0.099 Sum_probs=63.7
Q ss_pred CceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEE
Q psy1766 15 PSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHL 81 (214)
Q Consensus 15 p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~ 81 (214)
+++.+|||+.... ...|...++.+...... ..|+|. ..+ +...+.+ .++ ++.+
T Consensus 46 ~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~~~~~~---~~VVV~-~~~---e~I~~~~----~~~---~v~v 111 (293)
T PLN02917 46 SRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAKLATTL---DHIVVA-TDD---ERIAECC----RGF---GADV 111 (293)
T ss_pred CcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHHcCCCC---CEEEEE-CCh---HHHHHHH----HHc---CCEE
Confidence 4678888886643 24455666666543322 254443 222 2333333 332 4444
Q ss_pred EEc--CCCcchHHHHHhhhhhcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766 82 YRT--SKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 82 i~~--~~~~G~~~a~n~g~~~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
+.. ....|.+.+ ..|++... .++++++++|.. ++++.|..+++.+.++.+.++...
T Consensus 112 i~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~ 172 (293)
T PLN02917 112 IMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTA 172 (293)
T ss_pred EeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 432 334465555 35666553 689999999998 589999999998866554444333
No 103
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=95.30 E-value=0.54 Score=36.87 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CCCEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TGKVLV 107 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~gd~i~ 107 (214)
..+..+++.+......+ +|+||-+.. ......+.+... ...+.++.. ..+.+.+.-.|++.. +.++++
T Consensus 32 pli~~~l~~l~~~~~~~---~ivvv~~~~----~~~~~~~~~~~~--~~~~~~~~~--~~~~~~sv~~~l~~~~~~d~vl 100 (227)
T PRK00155 32 PILEHTLEAFLAHPRID---EIIVVVPPD----DRPDFAELLLAK--DPKVTVVAG--GAERQDSVLNGLQALPDDDWVL 100 (227)
T ss_pred EHHHHHHHHHHcCCCCC---EEEEEeChH----HHHHHHHHhhcc--CCceEEeCC--cchHHHHHHHHHHhCCCCCEEE
Confidence 56777888776543222 777776532 222222322211 123444432 224677777788775 578999
Q ss_pred EEcCCCc-cCcCchHHHHHHHhcCCC-EEEEee
Q psy1766 108 FLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPI 138 (214)
Q Consensus 108 ~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~ 138 (214)
++++|.. ++++.++.+++.+.++.. ..++|.
T Consensus 101 v~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 133 (227)
T PRK00155 101 VHDAARPFLTPDDIDRLIEAAEETGAAILAVPV 133 (227)
T ss_pred EccCccCCCCHHHHHHHHHHHhhCCCEEEEEec
Confidence 9999987 589999999998865433 455554
No 104
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=95.18 E-value=0.33 Score=37.43 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|.-+ . ..+..+|+++.+... -+|+||-+... +...+.+.+... + +..+.++..+...|.+.+...|++
T Consensus 23 ll~v~g-~-pli~~~l~~l~~~g~----~~i~vv~~~~~--~~i~~~~~~~~~-~-~~~i~~~~~~~~~g~~~al~~~~~ 92 (217)
T cd04181 23 LLPIAG-K-PILEYIIERLARAGI----DEIILVVGYLG--EQIEEYFGDGSK-F-GVNIEYVVQEEPLGTAGAVRNAED 92 (217)
T ss_pred ccEECC-e-eHHHHHHHHHHHCCC----CEEEEEeccCH--HHHHHHHcChhh-c-CceEEEEeCCCCCccHHHHHHhhh
Confidence 344444 3 678888888876542 27777665433 223333322110 1 235666665556788899999988
Q ss_pred hcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 100 YATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 100 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
....+.++++++|.....+ +..++....+
T Consensus 93 ~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~ 121 (217)
T cd04181 93 FLGDDDFLVVNGDVLTDLD-LSELLRFHRE 121 (217)
T ss_pred hcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 8777889999999987776 4555555443
No 105
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=94.77 E-value=0.35 Score=39.20 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=69.3
Q ss_pred eEEEE-EEeC-CC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--------
Q psy1766 17 TSVII-CFYN-EH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-------- 85 (214)
Q Consensus 17 vSVII-p~~n-~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-------- 85 (214)
++|++ |.|. +. +..|.+-|+-...+.. ..+.+-+.+++ +.+.++++.+.+. ..|+++..+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G~----~~~~~Y~~~~~--~~~~~vL~~Y~~~---g~v~~~~w~~~~~~~~~ 73 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLGV----DHFYFYDNSSS--PSVRKVLKEYERS---GYVEVIPWPLRPKFPDF 73 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhCC----CEEEEEEccCC--HHHHHhHHHHhhc---CeEEEEEcccccccCCc
Confidence 55555 4454 43 2377777776655522 26777777777 7899999998775 467776653
Q ss_pred -----------CCcchHHHHHhhhhhc--CCCEEEEEcCCCccCcCc----hHHHHHHHhcC
Q psy1766 86 -----------KREGLIRARMFGAKYA--TGKVLVFLDSHIEVNTHW----LEPLLVPIAER 130 (214)
Q Consensus 86 -----------~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~~~~~~----l~~l~~~~~~~ 130 (214)
...|...|.|-++... ..+|++|+|-|..+-|.- .+.+...++..
T Consensus 74 ~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~ 135 (285)
T PF01697_consen 74 PSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREF 135 (285)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhc
Confidence 0134566777777666 468999999999975543 66666666543
No 106
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=94.69 E-value=0.84 Score=35.26 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=60.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
++|.-+. ..+...|+.+.+... -+|+|+-+... +...+.+.... .+ +..+.+.......|.+.+.-.|++
T Consensus 23 ll~i~g~--pli~~~l~~l~~~g~----~~v~vv~~~~~--~~i~~~~~~~~-~~-~~~~~~~~~~~~~G~~~~l~~a~~ 92 (223)
T cd06915 23 LAPVAGR--PFLEYLLEYLARQGI----SRIVLSVGYLA--EQIEEYFGDGY-RG-GIRIYYVIEPEPLGTGGAIKNALP 92 (223)
T ss_pred ccEECCc--chHHHHHHHHHHCCC----CEEEEEcccCH--HHHHHHHcCcc-cc-CceEEEEECCCCCcchHHHHHHHh
Confidence 4444444 578888888776532 26777655332 22222222110 01 123445554566788888888888
Q ss_pred hcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 100 YATGKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 100 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
....+.++++.+|..++.+ +..++..+.+.
T Consensus 93 ~~~~~~~lv~~~D~~~~~~-~~~~l~~~~~~ 122 (223)
T cd06915 93 KLPEDQFLVLNGDTYFDVD-LLALLAALRAS 122 (223)
T ss_pred hcCCCCEEEEECCcccCCC-HHHHHHHHHhC
Confidence 8877889999999877544 67777766443
No 107
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.11 Score=41.12 Aligned_cols=88 Identities=19% Similarity=0.257 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--CcchHHHHHhhhhhcCCCEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVL 106 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~~~a~n~g~~~a~gd~i 106 (214)
+-|.++|++|.+..- -|++||-+|=. .+.++.+..++ +...+++.++. ..+.+..+-.|....+++ +
T Consensus 32 ~ii~~~i~~L~~~gi----~e~vvV~~g~~-----~~lve~~l~~~-~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-f 100 (239)
T COG1213 32 EIIYRTIENLAKAGI----TEFVVVTNGYR-----ADLVEEFLKKY-PFNAKIVINSDYEKTNTGYSLLLAKDYMDGR-F 100 (239)
T ss_pred EeHHHHHHHHHHcCC----ceEEEEeccch-----HHHHHHHHhcC-CcceEEEeCCCcccCCceeEEeeehhhhcCc-E
Confidence 578889999876665 38999987754 34677777776 33777777642 222345666778888888 7
Q ss_pred EEEcCCCccCcCchHHHHHHH
Q psy1766 107 VFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 107 ~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+++++|..++|.+++.+++.-
T Consensus 101 ii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 101 ILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred EEEeCCEeecHHHHHHHHhCc
Confidence 789999999999999998864
No 108
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=94.60 E-value=0.92 Score=35.72 Aligned_cols=90 Identities=12% Similarity=0.193 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 108 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~ 108 (214)
..|..+++.+.+.... .+|+|+-+. + .+.++...+ +..+.+.......|.+. .-.++.....+.+++
T Consensus 28 Pli~~~i~~l~~~~~~---~~ivv~t~~----~----~i~~~~~~~-~~~v~~~~~~~~~g~~~-~~~a~~~~~~d~~lv 94 (238)
T PRK13368 28 PMIQHVYERAAQAAGV---EEVYVATDD----Q----RIEDAVEAF-GGKVVMTSDDHLSGTDR-LAEVMLKIEADIYIN 94 (238)
T ss_pred CHHHHHHHHHHhcCCC---CeEEEECCh----H----HHHHHHHHc-CCeEEecCccCCCccHH-HHHHHHhCCCCEEEE
Confidence 5667777777664222 277775431 2 233333333 22332222222334443 333555555689999
Q ss_pred EcCCCc-cCcCchHHHHHHHhcCC
Q psy1766 109 LDSHIE-VNTHWLEPLLVPIAERT 131 (214)
Q Consensus 109 lD~D~~-~~~~~l~~l~~~~~~~~ 131 (214)
+++|.. +.+..+..+++.+.++.
T Consensus 95 ~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 95 VQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred EcCCcCcCCHHHHHHHHHHHHHCC
Confidence 999984 68999999998885443
No 109
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=94.54 E-value=0.5 Score=37.37 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=66.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcchHHHHHhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G~~~a~n~g 97 (214)
.+|..+.. .-|...|+.+.+... -++|+|-.+.. .+.+.++..... ...+.++..+...|.+.|.-.+
T Consensus 24 ll~i~g~~-pli~~~l~~l~~~g~----~~ii~V~~~~~-----~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a 93 (248)
T PF00483_consen 24 LLPIGGKY-PLIDYVLENLANAGI----KEIIVVVNGYK-----EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQA 93 (248)
T ss_dssp GSEETTEE-EHHHHHHHHHHHTTC----SEEEEEEETTT-----HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHT
T ss_pred cceecCCC-cchhhhhhhhcccCC----ceEEEEEeecc-----cccccccccccccccccceeeecccccchhHHHHHH
Confidence 45667775 678888888877444 27555555432 223444444321 1247888778888999999999
Q ss_pred hhhcCCCE----EEEEcCCCccCcCchHHHHHHHhc
Q psy1766 98 AKYATGKV----LVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 98 ~~~a~gd~----i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
......+- ++++.+|..... -+..+++...+
T Consensus 94 ~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~ 128 (248)
T PF00483_consen 94 LDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRE 128 (248)
T ss_dssp HHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHH
T ss_pred HHHhhhccccceEEEEeccccccc-hhhhHHHhhhc
Confidence 99887665 899999998877 56777766643
No 110
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=94.49 E-value=0.87 Score=35.43 Aligned_cols=101 Identities=8% Similarity=0.065 Sum_probs=60.6
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLI 91 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~ 91 (214)
..||. .+|.-+. ..+...|.++.+... -+|+|+-.... +...+.+.. ..+ +..+.+.... +..|.+
T Consensus 19 ~~pK~--llpi~g~--~li~~~l~~l~~~gi----~~i~iv~~~~~--~~i~~~~~~--~~~-~~~i~~~~~~~~~~g~~ 85 (221)
T cd06422 19 TRPKP--LVPVAGK--PLIDHALDRLAAAGI----RRIVVNTHHLA--DQIEAHLGD--SRF-GLRITISDEPDELLETG 85 (221)
T ss_pred CCCCc--eeeECCE--EHHHHHHHHHHHCCC----CEEEEEccCCH--HHHHHHHhc--ccC-CceEEEecCCCcccccH
Confidence 34554 4555444 688888888876643 26666654332 222222222 112 2344444433 456888
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
.+...|+.....+.++++.+|.....++.. ++...
T Consensus 86 ~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~ 120 (221)
T cd06422 86 GGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLH 120 (221)
T ss_pred HHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHH
Confidence 888888888766889999999988877555 44444
No 111
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=94.47 E-value=0.76 Score=36.17 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCC
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK 104 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd 104 (214)
+.. ..+..+++.+......+ +|+|+-+... . .+.+.++... .+++++..+...+.+ ....+++....+
T Consensus 22 ~Gk-pli~~~i~~l~~~~~~~---~ivVv~~~~~--~--~~~i~~~~~~---~~v~~v~~~~~~~l~-~~~~~~~~~~~d 89 (233)
T cd02518 22 GGK-PLLEHLLDRLKRSKLID---EIVIATSTNE--E--DDPLEALAKK---LGVKVFRGSEEDVLG-RYYQAAEEYNAD 89 (233)
T ss_pred CCc-cHHHHHHHHHHhCCCCC---eEEEECCCCc--c--cHHHHHHHHH---cCCeEEECCchhHHH-HHHHHHHHcCCC
Confidence 444 67888888876543223 7777655442 1 1233343333 256677655432222 223344445679
Q ss_pred EEEEEcCCCc-cCcCchHHHHHHHhcCCC
Q psy1766 105 VLVFLDSHIE-VNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 105 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 132 (214)
+++++++|.. ++++.++++++.+..+..
T Consensus 90 ~vli~~~D~P~i~~~~i~~li~~~~~~~~ 118 (233)
T cd02518 90 VVVRITGDCPLIDPEIIDAVIRLFLKSGA 118 (233)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999988 489999999998865433
No 112
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=94.45 E-value=0.99 Score=35.72 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh--hcCCCEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK--YATGKVL 106 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~--~a~gd~i 106 (214)
..|..+|+.+.+. .. .+|+|+-+ . +.. .++..++ +..+.+.......|.+........ ....+.+
T Consensus 28 pll~~~l~~l~~~-~i---~~ivvv~~-~---~~i----~~~~~~~-~~~v~~~~~~~~~gt~~~~~~~~~~~~~~~~~v 94 (245)
T PRK05450 28 PMIVRVYERASKA-GA---DRVVVATD-D---ERI----ADAVEAF-GGEVVMTSPDHPSGTDRIAEAAAKLGLADDDIV 94 (245)
T ss_pred CHHHHHHHHHHhc-CC---CeEEEECC-c---HHH----HHHHHHc-CCEEEECCCcCCCchHHHHHHHHhcCCCCCCEE
Confidence 5777777777654 22 37776543 1 223 3333332 223333222333344433332212 2246889
Q ss_pred EEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 107 VFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 107 ~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
+++++|. .++++.+..+++.+..+
T Consensus 95 lv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 95 VNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred EEecCCCCCCCHHHHHHHHHHHhcC
Confidence 9999999 57899999999887654
No 113
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=94.32 E-value=0.94 Score=37.07 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=63.4
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC---CC-----
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS---KR----- 87 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~---~~----- 87 (214)
.++||....|-. ..+..+|.|++.....+ +.+.|++|+.+ .+..+.+.+....+ +..+.++..+ ..
T Consensus 2 ~~~iv~~~~~y~-~~~~~~i~Sil~n~~~~--~~fhii~d~~s--~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~~~~ 75 (280)
T cd06431 2 HVAIVCAGYNAS-RDVVTLVKSVLFYRRNP--LHFHLITDEIA--RRILATLFQTWMVP-AVEVSFYNAEELKSRVSWIP 75 (280)
T ss_pred EEEEEEccCCcH-HHHHHHHHHHHHcCCCC--EEEEEEECCcC--HHHHHHHHHhcccc-CcEEEEEEhHHhhhhhccCc
Confidence 367777774444 89999999998876444 68888888776 45545554433332 3456665542 11
Q ss_pred -cchHH----HHHhhhhhc--CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766 88 -EGLIR----ARMFGAKYA--TGKVLVFLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 88 -~G~~~----a~n~g~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~ 126 (214)
...+. .|-..-+.- .-+=++++|+|..+..+ |..|.+.
T Consensus 76 ~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d-i~eL~~~ 120 (280)
T cd06431 76 NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD-IAELWKI 120 (280)
T ss_pred ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC-HHHHHHH
Confidence 11111 122222322 36789999999988776 6666665
No 114
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=94.31 E-value=0.92 Score=36.14 Aligned_cols=115 Identities=10% Similarity=0.108 Sum_probs=70.1
Q ss_pred EEEEEEeCC-CchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCc--------
Q psy1766 18 SVIICFYNE-HPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKRE-------- 88 (214)
Q Consensus 18 SVIIp~~n~-~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~-------- 88 (214)
.|++.+-+. .+..+..++.|++..+... ..+.|+.++-+ +...+.++++...+ ...++++..+...
T Consensus 2 ~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~--~~~~il~~~is--~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 76 (246)
T cd00505 2 AIVIVATGDEYLRGAIVLMKSVLRHRTKP--LRFHVLTNPLS--DTFKAALDNLRKLY-NFNYELIPVDILDSVDSEHLK 76 (246)
T ss_pred eEEEEecCcchhHHHHHHHHHHHHhCCCC--eEEEEEEcccc--HHHHHHHHHHHhcc-CceEEEEeccccCcchhhhhc
Confidence 455556552 2588999999999877654 68888888765 56777777765533 3456665543111
Q ss_pred ---c-hHHHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEee
Q psy1766 89 ---G-LIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 89 ---G-~~~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
. .+..|-...+... -+=|++||+|..+..+ +..+...-..+...++++.
T Consensus 77 ~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~d-i~~L~~~~l~~~~~aav~d 130 (246)
T cd00505 77 RPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTD-IDELWDTPLGGQELAAAPD 130 (246)
T ss_pred CccccceeHHHHHHHHhhccCeEEEEcCCeeeccC-HHHHhhccCCCCeEEEccC
Confidence 0 0112222222233 6789999999988755 6666654334445555543
No 115
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=94.28 E-value=0.73 Score=35.76 Aligned_cols=100 Identities=7% Similarity=0.115 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHHHhhhhhcC--
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRARMFGAKYAT-- 102 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~n~g~~~a~-- 102 (214)
..|..+++.+.+....+ +|+|+-+. +...+.+ .++ +..+.+.+. ....|...+...|++...
T Consensus 27 pll~~~l~~l~~~~~~~---~IvV~~~~----~~i~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~ 94 (223)
T cd02513 27 PLIAWTIEAALESKLFD---RVVVSTDD----EEIAEVA----RKY-GAEVPFLRPAELATDTASSIDVILHALDQLEEL 94 (223)
T ss_pred cHHHHHHHHHHhCCCCC---EEEEECCc----HHHHHHH----HHh-CCCceeeCChHHCCCCCCcHHHHHHHHHHHHHh
Confidence 56777887776543332 66664321 2233332 222 111223332 112355666677776543
Q ss_pred ---CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeeee
Q psy1766 103 ---GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIID 140 (214)
Q Consensus 103 ---gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~~ 140 (214)
.++++++++|.. +.++.+..+++.+.++...++.+...
T Consensus 95 ~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~ 136 (223)
T cd02513 95 GRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTE 136 (223)
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 389999999987 58899999999886544445555443
No 116
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=94.21 E-value=0.76 Score=34.68 Aligned_cols=94 Identities=5% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhhcC
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKYAT 102 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~a~ 102 (214)
+.. ..+..+++.+... . .+|+|+-+... .. +... ..+++++.. ....|...+...|++...
T Consensus 25 ~g~-pll~~~l~~l~~~--~---~~ivv~~~~~~-----~~----~~~~--~~~~~~i~~~~~~~~g~~~si~~al~~~~ 87 (186)
T TIGR02665 25 GGK-PLIEHVLARLRPQ--V---SDLAISANRNP-----ER----YAQA--GFGLPVVPDALADFPGPLAGILAGLRWAG 87 (186)
T ss_pred CCE-EHHHHHHHHHHhh--C---CEEEEEcCCCH-----HH----Hhhc--cCCCcEEecCCCCCCCCHHHHHHHHHhcC
Confidence 344 6777777777531 2 37777654321 11 1111 123455553 335788888988998888
Q ss_pred CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEE
Q psy1766 103 GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVT 135 (214)
Q Consensus 103 gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv 135 (214)
.++++++++|.. ++++.++.+++.+.++...++
T Consensus 88 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~ 121 (186)
T TIGR02665 88 TDWVLTVPCDTPFLPEDLVARLAAALEASDADIA 121 (186)
T ss_pred CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcEE
Confidence 899999999984 699999999998865443333
No 117
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=94.18 E-value=0.64 Score=36.56 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=58.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE--EcCCCcchHHHHHhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY--RTSKREGLIRARMFG 97 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i--~~~~~~G~~~a~n~g 97 (214)
.+|..+. ..+..+|.++.++... +|+||-.... +...+.+.++..+ .++.++ ......|.+.+...|
T Consensus 25 llpv~g~--pli~~~l~~l~~~g~~----~v~iv~~~~~--~~~~~~l~~~~~~---~~~~i~~~~~~~~~G~~~al~~a 93 (233)
T cd06425 25 LVEFCNK--PMIEHQIEALAKAGVK----EIILAVNYRP--EDMVPFLKEYEKK---LGIKITFSIETEPLGTAGPLALA 93 (233)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEEeeeCH--HHHHHHHhccccc---CCeEEEeccCCCCCccHHHHHHH
Confidence 4455554 5788888888776432 6666654433 3334444433112 234443 334567888888888
Q ss_pred hhhcCC--CEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 98 AKYATG--KVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 98 ~~~a~g--d~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
....+. +-++++.+|.....+ +..+++...+.
T Consensus 94 ~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 127 (233)
T cd06425 94 RDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKH 127 (233)
T ss_pred HHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHc
Confidence 877643 335666899877666 57777766543
No 118
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=94.15 E-value=0.92 Score=36.31 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=63.7
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..||. .+|.-+. ..|...|.++.+..... +|+||-.... +...+.+....... +..+.++......|.+.
T Consensus 20 ~~PK~--llpv~g~--plI~~~l~~l~~~~gi~---~i~iv~~~~~--~~i~~~l~~~~~~~-~~~i~~~~~~~~~Gt~~ 89 (257)
T cd06428 20 DVPKP--LFPVAGK--PMIHHHIEACAKVPDLK---EVLLIGFYPE--SVFSDFISDAQQEF-NVPIRYLQEYKPLGTAG 89 (257)
T ss_pred CCCcc--cCeECCe--eHHHHHHHHHHhcCCCc---EEEEEecCCH--HHHHHHHHhccccc-CceEEEecCCccCCcHH
Confidence 44554 5566555 57888888887643322 7777755433 33334443321111 23555555555678888
Q ss_pred HHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 93 ARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 93 a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
|...+.... ..+.++++.+|.....+ +..+++...+.
T Consensus 90 al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~~ 129 (257)
T cd06428 90 GLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKKH 129 (257)
T ss_pred HHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHHc
Confidence 776666554 24678889999886554 77888766543
No 119
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=94.11 E-value=0.088 Score=43.63 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=31.8
Q ss_pred chHHHHHhhhhhcCCCEEEEEcCCCccCcC-------chHHHHHHHh
Q psy1766 89 GLIRARMFGAKYATGKVLVFLDSHIEVNTH-------WLEPLLVPIA 128 (214)
Q Consensus 89 G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~-------~l~~l~~~~~ 128 (214)
...++||.|.-.++.+|++++|+|+.+..+ ++++.+.-+.
T Consensus 80 ~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~ 126 (346)
T PLN03180 80 KDSACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL 126 (346)
T ss_pred CcccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence 345789999999999999999999998766 5665555554
No 120
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=94.11 E-value=1.7 Score=37.20 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 108 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~ 108 (214)
..+..+++.+.+...-. +|+||-+... .+..+.+...+ ..++++. ...+...+...|++....+++++
T Consensus 34 Pll~~tl~~l~~~~~i~---~IvVVv~~~~-----~~~~~~~~~~~--~~v~~v~--gG~~r~~SV~~gL~~l~~d~VLV 101 (378)
T PRK09382 34 PLWLHVLENLSSAPAFK---EIVVVIHPDD-----IAYMKKALPEI--KFVTLVT--GGATRQESVRNALEALDSEYVLI 101 (378)
T ss_pred eHHHHHHHHHhcCCCCC---eEEEEeChHH-----HHHHHHhcccC--CeEEEeC--CCchHHHHHHHHHHhcCCCeEEE
Confidence 57777888876544323 7777754322 23333332221 1244443 22345666777888777799999
Q ss_pred EcCCCc-cCcCchHHHHHHHhcC
Q psy1766 109 LDSHIE-VNTHWLEPLLVPIAER 130 (214)
Q Consensus 109 lD~D~~-~~~~~l~~l~~~~~~~ 130 (214)
.|+|-. ++++.++.+++.+.+.
T Consensus 102 hdadrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 102 HDAARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred eeccccCCCHHHHHHHHHHhhcC
Confidence 999965 5889999999887653
No 121
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=94.08 E-value=1.3 Score=36.45 Aligned_cols=97 Identities=14% Similarity=0.274 Sum_probs=62.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHh---hcCCCcEEEEEcCCCcchHHHHHh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK---GLNNGRVHLYRTSKREGLIRARMF 96 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~---~~~~~~v~~i~~~~~~G~~~a~n~ 96 (214)
.+|.++. ..+...|.++..... -+|+||-.... . +.++++.. ++ +.++.++..+...|.+.|...
T Consensus 28 Llpv~gk--PmI~~~l~~l~~aGi----~~I~ii~~~~~----~-~~~~~~l~~g~~~-g~~i~y~~q~~~~Gta~Al~~ 95 (292)
T PRK15480 28 LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQD----T-PRFQQLLGDGSQW-GLNLQYKVQPSPDGLAQAFII 95 (292)
T ss_pred EeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCc----h-HHHHHHHcCcccc-CceeEEEECCCCCCHHHHHHH
Confidence 7888887 477777777776533 37876654332 1 22344332 22 346778877778899999998
Q ss_pred hhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 97 GAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 97 g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
|...... ++++++ +|..+...-+..+++...+
T Consensus 96 a~~~i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 96 GEEFIGGDDCALVL-GDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHHHhCCCCEEEEE-CCeeeeccCHHHHHHHHHh
Confidence 8887744 665555 6666655557888876643
No 122
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=94.04 E-value=0.62 Score=35.58 Aligned_cols=59 Identities=22% Similarity=0.246 Sum_probs=45.5
Q ss_pred cEEEEEcCCCcchHHHHHhhhhhcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766 78 RVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 78 ~v~~i~~~~~~G~~~a~n~g~~~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
++.++..+ ..|.+.+...|++++. ++.++++-+|.. +.++.++++++.+++ .+.+++|.
T Consensus 65 ~v~~i~~~-~~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~ 126 (195)
T TIGR03552 65 GAPVLRDP-GPGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDVVIAPD 126 (195)
T ss_pred CCEEEecC-CCCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCEEEEec
Confidence 66777654 4599999999988753 468999999987 589999999987753 55667765
No 123
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=93.95 E-value=0.64 Score=36.02 Aligned_cols=107 Identities=14% Similarity=0.175 Sum_probs=64.9
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.++. +.. ..+..+++.+....... +|+||-+... .+....+........+.++.. ..|...+...|++
T Consensus 22 l~~i-~Gk-pll~~~i~~l~~~~~~~---~ivVv~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~al~ 89 (218)
T cd02516 22 FLEL-GGK-PVLEHTLEAFLAHPAID---EIVVVVPPDD-----IDLAKELAKYGLSKVVKIVEG--GATRQDSVLNGLK 89 (218)
T ss_pred eeEE-CCe-EHHHHHHHHHhcCCCCC---EEEEEeChhH-----HHHHHHHHhcccCCCeEEECC--chHHHHHHHHHHH
Confidence 4444 445 68888888886543222 7777665432 122222111110124555443 2356777888888
Q ss_pred hc---CCCEEEEEcCCCc-cCcCchHHHHHHHhcCCC-EEEEee
Q psy1766 100 YA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPI 138 (214)
Q Consensus 100 ~a---~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~ 138 (214)
+. ..++++++++|.. ++++.++.+++.+.+... ..+.|.
T Consensus 90 ~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 133 (218)
T cd02516 90 ALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGAAIPAVPV 133 (218)
T ss_pred hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCcEEEEEec
Confidence 76 5789999999987 589999999998865443 444443
No 124
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.90 E-value=1.2 Score=38.71 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=61.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|.-+ . ..|..+|+.+..... .+|+|+-.... +. +.++..+. ...+.++......|.+.+...+++
T Consensus 27 ll~v~g-k-pli~~~l~~l~~~gi----~~ivvv~~~~~--~~----i~~~~~~~-~~~~~~~~~~~~~G~~~sl~~a~~ 93 (446)
T PRK14353 27 LHPVAG-R-PMLAHVLAAAASLGP----SRVAVVVGPGA--EA----VAAAAAKI-APDAEIFVQKERLGTAHAVLAARE 93 (446)
T ss_pred cCEECC-c-hHHHHHHHHHHhCCC----CcEEEEECCCH--HH----HHHHhhcc-CCCceEEEcCCCCCcHHHHHHHHH
Confidence 344444 3 677888888766543 26666554322 22 33333322 123444444556787777777776
Q ss_pred hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCCE
Q psy1766 100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNT 133 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~ 133 (214)
... .+.++++++|. .+.++.++.+++..++..+.
T Consensus 94 ~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~ 130 (446)
T PRK14353 94 ALAGGYGDVLVLYGDTPLITAETLARLRERLADGADV 130 (446)
T ss_pred HHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence 652 57788899998 67888999998866554443
No 125
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=93.77 E-value=1.7 Score=34.23 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=63.4
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcchHHHHHhhhhhc-
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYA- 101 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G~~~a~n~g~~~a- 101 (214)
+.. ..|..+++.+......+ +|+||-+... ...++++..++. ..+++++.. ..+...+.-.|++..
T Consensus 28 ~gk-pll~~~i~~~~~~~~~~---~ivVv~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~--g~~r~~sv~~gl~~~~ 96 (230)
T PRK13385 28 VGE-PIFIHALRPFLADNRCS---KIIIVTQAQE-----RKHVQDLMKQLNVADQRVEVVKG--GTERQESVAAGLDRIG 96 (230)
T ss_pred CCe-EHHHHHHHHHHcCCCCC---EEEEEeChhh-----HHHHHHHHHhcCcCCCceEEcCC--CchHHHHHHHHHHhcc
Confidence 344 68888888876544333 6777654322 223333333321 124555542 234456777777765
Q ss_pred CCCEEEEEcCCCcc-CcCchHHHHHHHhcC-CCEEEEeeee
Q psy1766 102 TGKVLVFLDSHIEV-NTHWLEPLLVPIAER-TNTVTVPIID 140 (214)
Q Consensus 102 ~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~-~~~vv~~~~~ 140 (214)
..++++++|+|..+ +++.+.++++.+.++ ..+.+.|..+
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~~~~~~~d 137 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKYGAAICAVEVKD 137 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEEEEEeccc
Confidence 35788999999884 899999999988653 4455555544
No 126
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=93.58 E-value=0.85 Score=35.19 Aligned_cols=85 Identities=13% Similarity=0.208 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCCCEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGKVLV 107 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~gd~i~ 107 (214)
..+..+++.+... .. +|+||-... + ....+. ..+++++... ...|...+...|++....++++
T Consensus 34 ~ll~~~i~~l~~~--~~---~ivvv~~~~---~----~~~~~~----~~~~~~i~~~~~~~G~~~si~~~l~~~~~~~vl 97 (200)
T PRK02726 34 PLLQRVARIAAAC--AD---EVYIITPWP---E----RYQSLL----PPGCHWLREPPPSQGPLVAFAQGLPQIKTEWVL 97 (200)
T ss_pred eHHHHHHHHHHhh--CC---EEEEECCCH---H----HHHhhc----cCCCeEecCCCCCCChHHHHHHHHHhCCCCcEE
Confidence 6777777777532 12 666664321 1 222221 1256666543 3478899999999998889999
Q ss_pred EEcCCCcc-CcCchHHHHHHHhc
Q psy1766 108 FLDSHIEV-NTHWLEPLLVPIAE 129 (214)
Q Consensus 108 ~lD~D~~~-~~~~l~~l~~~~~~ 129 (214)
++++|..+ +++.++.+++....
T Consensus 98 v~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 98 LLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Confidence 99999885 88999999998754
No 127
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=93.36 E-value=1.8 Score=33.89 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=58.8
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..||. .+|.-+. ..+...|..+.+... -+|+||-.... +...+.+.+.. ++ +..+.++......|.+.
T Consensus 20 ~~pK~--l~~i~g~--~li~~~l~~l~~~~~----~~i~vv~~~~~--~~~~~~~~~~~-~~-~~~i~~~~~~~~~g~~~ 87 (236)
T cd04189 20 TRPKQ--LIPVAGK--PIIQYAIEDLREAGI----EDIGIVVGPTG--EEIKEALGDGS-RF-GVRITYILQEEPLGLAH 87 (236)
T ss_pred CCCce--eeEECCc--chHHHHHHHHHHCCC----CEEEEEcCCCH--HHHHHHhcchh-hc-CCeEEEEECCCCCChHH
Confidence 34443 4555444 577788888776532 27776665433 23333333211 11 23566666555678888
Q ss_pred HHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 93 ARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 93 a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+...|..... .++ +++.+|..+..+. ..++...
T Consensus 88 sl~~a~~~i~~~~~-li~~~D~~~~~~~-~~~~~~~ 121 (236)
T cd04189 88 AVLAARDFLGDEPF-VVYLGDNLIQEGI-SPLVRDF 121 (236)
T ss_pred HHHHHHHhcCCCCE-EEEECCeecCcCH-HHHHHHH
Confidence 8888888765 455 5578888887664 4455544
No 128
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=93.13 E-value=0.19 Score=41.92 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=47.8
Q ss_pred CcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh----cCCCEEEEeeeeeecC
Q psy1766 87 REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA----ERTNTVTVPIIDIINA 144 (214)
Q Consensus 87 ~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~~~ 144 (214)
-+-....||.|+..|+.+|++.+|.|..+.++.-+.+.+.+. ....+.|+|.++.-..
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~ 173 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREG 173 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccC
Confidence 455778999999999999999999999999998888777663 3567788899886543
No 129
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=93.02 E-value=3.7 Score=33.37 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=58.6
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..||- .+|..+.. ..|..+++.+....... +|+||-+.. -.+.+++..... ...+.++..+...|.+.
T Consensus 21 ~~PK~--ll~l~g~~-~li~~~l~~l~~~~~~~---~i~vvt~~~-----~~~~v~~~l~~~-~~~~~ii~ep~~~gTa~ 88 (274)
T cd02509 21 SYPKQ--FLKLFGDK-SLLQQTLDRLKGLVPPD---RILVVTNEE-----YRFLVREQLPEG-LPEENIILEPEGRNTAP 88 (274)
T ss_pred CCCce--EeEcCCCC-cHHHHHHHHHhcCCCCC---cEEEEechH-----HHHHHHHHHhhc-CCCceEEECCCCCCcHH
Confidence 45554 56666656 78888999887654333 777776532 122344333321 24677776666778888
Q ss_pred HHHhhhhhcC----CCEEEEEcCCCccC
Q psy1766 93 ARMFGAKYAT----GKVLVFLDSHIEVN 116 (214)
Q Consensus 93 a~n~g~~~a~----gd~i~~lD~D~~~~ 116 (214)
|.-.++.... .++++++.+|..+.
T Consensus 89 ai~~a~~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 89 AIALAALYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHHHHHHHHhcCCCCeEEEecchhccc
Confidence 7777766543 57899999998875
No 130
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.81 E-value=1.3 Score=38.65 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=63.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
++|..+. ..+...|+++.+... .+++++-.... + .+.++..+. ..+.++......|.+.+...|++
T Consensus 25 l~pi~g~--pli~~~l~~l~~~gi----~~iiiv~~~~~--~----~i~~~~~~~--~~i~~~~~~~~~Gt~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR--PMVSWPVAAAREAGA----GRIVLVVGHQA--E----KVREHFAGD--GDVSFALQEEQLGTGHAVACAAP 90 (459)
T ss_pred eceeCCc--cHHHHHHHHHHhcCC----CeEEEEECCCH--H----HHHHHhccC--CceEEEecCCCCCHHHHHHHHHH
Confidence 5565554 577778888765432 26666554332 1 223332221 36777666667788888888887
Q ss_pred hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
... .+.++++++|. .+.+..+..+++.+.+.
T Consensus 91 ~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~ 124 (459)
T PRK14355 91 ALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT 124 (459)
T ss_pred HhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc
Confidence 764 47899999998 56788899999877544
No 131
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=92.73 E-value=3.3 Score=32.08 Aligned_cols=103 Identities=13% Similarity=0.191 Sum_probs=62.7
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc-CC
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TG 103 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a-~g 103 (214)
+.. ..+..+++.+...... .+|+||-+... .+.+....... ..+.++... .+...+...|++.. ..
T Consensus 25 ~gk-pll~~~l~~l~~~~~~---~~ivVv~~~~~-----~~~~~~~~~~~--~~~~~~~~~--~~~~~sl~~~l~~~~~~ 91 (217)
T TIGR00453 25 GGR-PLLEHTLDAFLAHPAI---DEVVVVVSPED-----QEFFQKYLVAR--AVPKIVAGG--DTRQDSVRNGLKALKDA 91 (217)
T ss_pred CCe-EHHHHHHHHHhcCCCC---CEEEEEEChHH-----HHHHHHHhhcC--CcEEEeCCC--chHHHHHHHHHHhCCCC
Confidence 445 6888888888654222 37777765321 12222222211 234444322 24556777788776 67
Q ss_pred CEEEEEcCCCc-cCcCchHHHHHHHhcCCC-EEEEeeee
Q psy1766 104 KVLVFLDSHIE-VNTHWLEPLLVPIAERTN-TVTVPIID 140 (214)
Q Consensus 104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~-~vv~~~~~ 140 (214)
++++++++|.. ++++.+..+++.+.++.. ..++|..+
T Consensus 92 d~vlv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~ 130 (217)
T TIGR00453 92 EWVLVHDAARPFVPKELLDRLLEALRKAGAAILALPVAD 130 (217)
T ss_pred CEEEEccCccCCCCHHHHHHHHHHHhhCCcEEEeEeccc
Confidence 89999999986 689999999998865433 44454433
No 132
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=92.23 E-value=3.7 Score=31.74 Aligned_cols=104 Identities=17% Similarity=0.194 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCCC--E
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGK--V 105 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~gd--~ 105 (214)
.-+..+++..++... .++|||--.- ..+........ .+++++.++ ...|.+.....|++++.++ .
T Consensus 32 plv~~~~~~a~~a~~----~~vivV~g~~-----~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~ 99 (199)
T COG2068 32 PLVRASAETALSAGL----DRVIVVTGHR-----VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGLRAADAEGDG 99 (199)
T ss_pred cHHHHHHHHHHhcCC----CeEEEEeCcc-----hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHHHhcccCCCe
Confidence 456666666655333 3777776543 22233333332 478888765 4789999999999999765 9
Q ss_pred EEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEeeeeeecCC
Q psy1766 106 LVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIIDIINAD 145 (214)
Q Consensus 106 i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 145 (214)
++++-+|.- +.++.+.+++..+.... .++.|......+.
T Consensus 100 v~~~lgDmP~V~~~t~~rl~~~~~~~~-~~v~p~~~g~rG~ 139 (199)
T COG2068 100 VVLMLGDMPQVTPATVRRLIAAFRARG-AAVRPVYGGARGH 139 (199)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhccccC-ceeeeeccCCcCC
Confidence 999999987 79999999999997664 5666655444333
No 133
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.22 E-value=2.5 Score=36.71 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=61.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|.-+ . ..|..+|+++.+.... +++||-.... + .++++..+. ..++++..+...|.+.+...+++
T Consensus 23 ll~v~g-k-pli~~~l~~l~~~g~~----~iivvv~~~~--~----~i~~~~~~~--~~i~~v~~~~~~G~~~sv~~~~~ 88 (450)
T PRK14360 23 LHPLGG-K-SLVERVLDSCEELKPD----RRLVIVGHQA--E----EVEQSLAHL--PGLEFVEQQPQLGTGHAVQQLLP 88 (450)
T ss_pred cCEECC-h-hHHHHHHHHHHhCCCC----eEEEEECCCH--H----HHHHHhccc--CCeEEEEeCCcCCcHHHHHHHHH
Confidence 444433 4 6788888888765432 5555544322 1 233333332 35777765556677777777776
Q ss_pred hcC--CCEEEEEcCCCc-cCcCchHHHHHHHhcCCC
Q psy1766 100 YAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 132 (214)
... .+.++++++|.. +.+..++.+++.+.+...
T Consensus 89 ~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~ 124 (450)
T PRK14360 89 VLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNA 124 (450)
T ss_pred HhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCC
Confidence 653 356788999984 688889999988765443
No 134
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=92.22 E-value=3.3 Score=32.33 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE-EcCCCcchH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY-RTSKREGLI 91 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i-~~~~~~G~~ 91 (214)
..||- .+|..+. ..+..+|+++.++. - -+++||-.... .....+.+..... ..++.++ ......|.+
T Consensus 18 ~~pK~--ll~i~g~--pli~~~l~~l~~~g-~---~~ivvv~~~~~---~~~~~~~~~~~~~-~~~~~i~~~~~~~~g~~ 85 (231)
T cd04183 18 TYPKP--LIEVDGK--PMIEWVIESLAKIF-D---SRFIFICRDEH---NTKFHLDESLKLL-APNATVVELDGETLGAA 85 (231)
T ss_pred CCCce--eeEECCE--EHHHHHHHhhhccC-C---ceEEEEEChHH---hhhhhHHHHHHHh-CCCCEEEEeCCCCCcHH
Confidence 44553 4566554 58888888887654 2 26666654221 2222222222111 1234333 224577888
Q ss_pred HHHHhhhhhcC-CCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 92 RARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 92 ~a~n~g~~~a~-gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
.+.-.|..... .+.++++.+|..+..+....+..+...+
T Consensus 86 ~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~ 125 (231)
T cd04183 86 CTVLLAADLIDNDDPLLIFNCDQIVESDLLAFLAAFRERD 125 (231)
T ss_pred HHHHHHHhhcCCCCCEEEEecceeeccCHHHHHHHhhccC
Confidence 88888888764 4778889999988877655444333333
No 135
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=92.14 E-value=0.67 Score=36.14 Aligned_cols=69 Identities=13% Similarity=0.112 Sum_probs=40.3
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCC-------cc---hHHHHHhhhhhcC-------CCEEEE
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKR-------EG---LIRARMFGAKYAT-------GKVLVF 108 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~-------~G---~~~a~n~g~~~a~-------gd~i~~ 108 (214)
.-.|||+|++.. .+.+.++.++. ++.+.+. +.. .. ....||.|++..+ .-+|.|
T Consensus 11 l~WIVVEd~~~~----~~~v~~lL~~s---gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF 83 (207)
T PF03360_consen 11 LHWIVVEDSEET----TPLVARLLRRS---GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF 83 (207)
T ss_dssp EEEEEEESSSS------HHHHHHHHHH---TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred eEEEEEeCCCCC----CHHHHHHHHHc---CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence 589999999863 33444444443 4444332 221 11 1458999998765 357889
Q ss_pred EcCCCccCcCchHHH
Q psy1766 109 LDSHIEVNTHWLEPL 123 (214)
Q Consensus 109 lD~D~~~~~~~l~~l 123 (214)
.|+|..++...+++|
T Consensus 84 aDDdNtYdl~LF~em 98 (207)
T PF03360_consen 84 ADDDNTYDLRLFDEM 98 (207)
T ss_dssp --TTSEE-HHHHHHH
T ss_pred CCCCCeeeHHHHHHH
Confidence 999999998888773
No 136
>PLN02189 cellulose synthase
Probab=91.99 E-value=0.59 Score=44.49 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=64.2
Q ss_pred hHHHHHHHHHH--hcCCCCCccEEEEEECCCCC----CCChHHHHHHHHhhc--------CCCcEEEEEcCCCcc-----
Q psy1766 29 ATLYRSVQTLL--SRTGQSLLHEIILVNDFSEY----PSNLHGEVETFVKGL--------NNGRVHLYRTSKREG----- 89 (214)
Q Consensus 29 ~~l~~~l~sl~--~q~~~~~~~eiivVdd~s~~----~d~t~~~~~~~~~~~--------~~~~v~~i~~~~~~G----- 89 (214)
+.++..++.+. .+..+. |--+.+||+.- ..+-..+++-+.... .-|.+.|+..+++.|
T Consensus 439 Ee~kvRI~~l~a~~~~~p~---~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~ 515 (1040)
T PLN02189 439 EEFKVRINAIVAKAQKVPP---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHK 515 (1040)
T ss_pred HHHHHHHHHHHhhcCccCC---ccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCccc
Confidence 55666777765 233433 44567888710 022333444333311 014588888777666
Q ss_pred hHHHHHhhhh----hcCCCEEEEEcCCCccC-cCchHHHHHHHhc
Q psy1766 90 LIRARMFGAK----YATGKVLVFLDSHIEVN-THWLEPLLVPIAE 129 (214)
Q Consensus 90 ~~~a~n~g~~----~a~gd~i~~lD~D~~~~-~~~l~~l~~~~~~ 129 (214)
+++|+|..++ .++|+||+.+|.|..+. +..+.+.+-.+..
T Consensus 516 KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 516 KAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred chhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 7999999994 45899999999999985 5999998887743
No 137
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=91.75 E-value=2 Score=35.18 Aligned_cols=101 Identities=15% Similarity=0.250 Sum_probs=62.2
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcc
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREG 89 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G 89 (214)
..||- .+|.++. ..+...|..+..... -+|+||-.... .+.++++... + +.++.++..+...|
T Consensus 19 ~~pK~--Llpv~gk--PmI~~~L~~l~~aGi----~~I~iv~~~~~-----~~~~~~~lg~g~~~-g~~i~~~~q~~~~G 84 (286)
T TIGR01207 19 AVSKQ--LLPIYDK--PMIYYPLSTLMLAGI----RDILIISTPQD-----TPRFQQLLGDGSQW-GVNLSYAVQPSPDG 84 (286)
T ss_pred CCCce--eeEECCE--EhHHHHHHHHHHCCC----CEEEEEecCCc-----HHHHHHHhcccccc-CceEEEEEccCCCC
Confidence 34443 7788886 477777777766543 27776653222 1233333321 2 33567777667889
Q ss_pred hHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHh
Q psy1766 90 LIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 90 ~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~ 128 (214)
.+.|.-.|...... +++++ -+|..+...-+..+++...
T Consensus 85 ta~al~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 85 LAQAFIIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred HHHHHHHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHH
Confidence 99999999888754 55555 4776665566777777653
No 138
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=91.74 E-value=2.8 Score=33.00 Aligned_cols=101 Identities=8% Similarity=0.073 Sum_probs=60.6
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc----CCCcchHHHHHhhhhh
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT----SKREGLIRARMFGAKY 100 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~----~~~~G~~~a~n~g~~~ 100 (214)
+.. ..+..+++.+.+....+ +|+|+-|. +.. .+.+.++ +..+.+.+. ....|...+...|++.
T Consensus 22 ~Gk-pLi~~ti~~a~~s~~~d---~IvVstd~----~~i----~~~a~~~-g~~v~~~r~~~l~~d~~~~~~si~~~l~~ 88 (222)
T TIGR03584 22 CGK-PMIAYSIEAALNSGLFD---KVVVSTDD----EEI----AEVAKSY-GASVPFLRPKELADDFTGTAPVVKHAIEE 88 (222)
T ss_pred CCc-CHHHHHHHHHHhCCCCC---EEEEeCCC----HHH----HHHHHHc-CCEeEEeChHHHcCCCCCchHHHHHHHHH
Confidence 344 67888888887655433 55553221 222 3333333 222333322 2245666777777765
Q ss_pred c----CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEee
Q psy1766 101 A----TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 101 a----~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
. ..++++++++|..+ .++.+.++++.+.++....++++
T Consensus 89 l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv 131 (222)
T TIGR03584 89 LKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSV 131 (222)
T ss_pred HhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 4 36999999999985 78999999999876534444443
No 139
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=91.68 E-value=4.9 Score=31.92 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC---CCE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT---GKV 105 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~---gd~ 105 (214)
.-+..+|+.++....- .+|||+-+... +. .++++.....+.++.++.. ..........|++... .++
T Consensus 33 pll~~tl~~f~~~~~i---~~Ivvv~~~~~--~~---~~~~~~~~~~~~~v~~v~G--G~~R~~SV~~gL~~~~~~~~~~ 102 (230)
T COG1211 33 PLLEHTLEAFLESPAI---DEIVVVVSPED--DP---YFEKLPKLSADKRVEVVKG--GATRQESVYNGLQALSKYDSDW 102 (230)
T ss_pred EehHHHHHHHHhCcCC---CeEEEEEChhh--hH---HHHHhhhhccCCeEEEecC--CccHHHHHHHHHHHhhccCCCE
Confidence 5678888888765553 48998887755 23 2333321111356777763 3345556666777765 799
Q ss_pred EEEEcCCCc-cCcCchHHHHHHHh-cCCCEEEEeeeeee
Q psy1766 106 LVFLDSHIE-VNTHWLEPLLVPIA-ERTNTVTVPIIDII 142 (214)
Q Consensus 106 i~~lD~D~~-~~~~~l~~l~~~~~-~~~~~vv~~~~~~~ 142 (214)
|++-|+--- ++++.+.+++.... .+..+.+.|..|.+
T Consensus 103 VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv~DTi 141 (230)
T COG1211 103 VLVHDAARPFLTPKLIKRLIELADKYGAAILALPVTDTL 141 (230)
T ss_pred EEEeccccCCCCHHHHHHHHHhhccCCcEEEEeeccCcE
Confidence 999998544 57888999985544 34556667777665
No 140
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=91.62 E-value=4.3 Score=32.22 Aligned_cols=113 Identities=12% Similarity=0.189 Sum_probs=67.0
Q ss_pred EEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC----------
Q psy1766 19 VIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR---------- 87 (214)
Q Consensus 19 VIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~---------- 87 (214)
|++.+ |.. +..+..++.|++...... .+.+.|+.++-+ +...+.++++.... ...++++..+..
T Consensus 3 I~~~~-d~~y~~~~~~~l~Sl~~~~~~~-~~~~~il~~~is--~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~ 77 (248)
T cd04194 3 IVFAI-DDNYAPYLAVTIKSILANNSKR-DYDFYILNDDIS--EENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTD 77 (248)
T ss_pred EEEEe-cHhhHHHHHHHHHHHHhcCCCC-ceEEEEEeCCCC--HHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccc
Confidence 34444 433 688889999998866532 268888888766 67788888876653 356666554211
Q ss_pred -cc-hHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 88 -EG-LIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 88 -~G-~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.. ...+|-...+.- ..+-++++|+|..+..+ +..+...-.++...++++
T Consensus 78 ~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~d-i~~L~~~~~~~~~~aa~~ 129 (248)
T cd04194 78 HISYATYYRLLIPDLLPDYDKVLYLDADIIVLGD-LSELFDIDLGDNLLAAVR 129 (248)
T ss_pred cccHHHHHHHHHHHHhcccCEEEEEeCCEEecCC-HHHHhcCCcCCCEEEEEe
Confidence 00 112222333333 37889999999988765 555554311333444444
No 141
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=91.50 E-value=3.8 Score=34.76 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=72.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh--cCCCcEEEEEcCCCcchHHHHHhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG--LNNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~--~~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
.+|.-|.+ .|...|+++.++.. .|++++-. ...+.++++... ..+.++.++......|.+.+.-.+
T Consensus 26 llpI~gkP--ii~~~l~~L~~~Gv----~eivi~~~------y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a 93 (358)
T COG1208 26 LLPIAGKP--LIEYVLEALAAAGV----EEIVLVVG------YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNA 93 (358)
T ss_pred cceeCCcc--HHHHHHHHHHHCCC----cEEEEEec------cchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHH
Confidence 56666764 78888888877554 27777732 233344444433 114688888888889999999999
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
.....++-++++.+|...+-+ +..+++..++.
T Consensus 94 ~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 94 LDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred HHhcCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 999887888999999999988 99999888665
No 142
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=91.19 E-value=1.3 Score=34.64 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=59.5
Q ss_pred EEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC------------
Q psy1766 21 ICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR------------ 87 (214)
Q Consensus 21 Ip~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~------------ 87 (214)
+-+.|.. +..+..++.|++..+..+....+++++++.+ +...+.+++...+. ..+..+.....
T Consensus 3 ~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~--~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
T PF01501_consen 3 VLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDIS--EEDFEKLRALAAEV--IEIEPIEFPDISMLEEFQFNSPS 78 (250)
T ss_dssp EEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS---HHHHHHHHHHSCCC--CTTECEEETSGGHHH--TTS-HC
T ss_pred EEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCC--HHHHHHHhhhcccc--cceeeeccchHHhhhhhhhcccc
Confidence 3344444 5777888999988877422267888888776 55666666554443 12222221111
Q ss_pred ---c-chHHHHHhhhhh-cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 88 ---E-GLIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 88 ---~-G~~~a~n~g~~~-a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
. ....++-...+. ...+-++++|+|..+..+ +..+...-.++...+++
T Consensus 79 ~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~d-l~~lf~~~~~~~~~~a~ 131 (250)
T PF01501_consen 79 KRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGD-LDELFDLDLQGKYLAAV 131 (250)
T ss_dssp CTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS--SHHHHC---TTSSEEEE
T ss_pred cccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecC-hhhhhcccchhhhcccc
Confidence 0 111222233344 567999999999998655 55555533334444444
No 143
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.11 E-value=4.8 Score=35.50 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=64.3
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA 93 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a 93 (214)
.||. .+|..+. ..|..+|+++.+... .+++|+-.... + .+.++.... ...+.++..+...|.+.+
T Consensus 22 ~pK~--llpi~gk--pli~~~l~~l~~~g~----~~iivvv~~~~--~----~i~~~~~~~-~~~~~~~~~~~~~Gt~~s 86 (482)
T PRK14352 22 TPKV--LHTLAGR--SMLGHVLHAAAGLAP----QHLVVVVGHDR--E----RVAPAVAEL-APEVDIAVQDEQPGTGHA 86 (482)
T ss_pred CCce--eceeCCc--cHHHHHHHHHHhcCC----CcEEEEECCCH--H----HHHHHhhcc-CCccEEEeCCCCCCcHHH
Confidence 4554 4555554 578888888776533 26665544322 2 222222221 124555555666787888
Q ss_pred HHhhhhhcC---CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766 94 RMFGAKYAT---GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 94 ~n~g~~~a~---gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~ 132 (214)
.-.|+++.. .+.++++++|. .+.+..+.++++...+...
T Consensus 87 i~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~ 129 (482)
T PRK14352 87 VQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGN 129 (482)
T ss_pred HHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 888887753 36888999998 4688889999987755443
No 144
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=91.02 E-value=5.1 Score=31.45 Aligned_cols=94 Identities=11% Similarity=0.162 Sum_probs=54.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC--CCcchHHHHHhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS--KREGLIRARMFG 97 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~--~~~G~~~a~n~g 97 (214)
.+|..+ . ..|...|+.+.+.... .+|+|+-+ . + .+.++..++ ++.++... ...|.+. .-.+
T Consensus 20 l~~i~g-k-pll~~~l~~l~~~~~i---~~ivvv~~--~--~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~~~~ 82 (239)
T cd02517 20 LADIAG-K-PMIQHVYERAKKAKGL---DEVVVATD--D--E----RIADAVESF---GGKVVMTSPDHPSGTDR-IAEV 82 (239)
T ss_pred CcccCC-c-CHHHHHHHHHHhCCCC---CEEEEECC--c--H----HHHHHHHHc---CCEEEEcCcccCchhHH-HHHH
Confidence 344434 3 5777778777654222 27777632 1 2 333333333 34444332 2335443 3334
Q ss_pred hhhcCC--CEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 98 AKYATG--KVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 98 ~~~a~g--d~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
++.... +.++++++|. .+++..+..+++.+.++
T Consensus 83 ~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 83 AEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred HHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 444444 8899999998 67889999999877554
No 145
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=91.02 E-value=2.6 Score=36.54 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=62.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
++|.-+. ..|..+|+.+.+... .+++|+-.... +.++++..++ .+.++......|.+.+...|+.
T Consensus 22 l~~i~gk--pli~~~l~~l~~~g~----~~iiiv~~~~~------~~i~~~~~~~---~i~~~~~~~~~G~~~ai~~a~~ 86 (451)
T TIGR01173 22 LHPLAGK--PMLEHVIDAARALGP----QKIHVVYGHGA------EQVRKALANR---DVNWVLQAEQLGTGHAVLQALP 86 (451)
T ss_pred hceeCCc--cHHHHHHHHHHhCCC----CeEEEEECCCH------HHHHHHhcCC---CcEEEEcCCCCchHHHHHHHHH
Confidence 4555444 678888888766443 26666544322 2234433332 5666655556788888888887
Q ss_pred hcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 100 YAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 100 ~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
... .+.++++++|. .+.+..+..+++...+.
T Consensus 87 ~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 87 FLPDDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred hcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 764 47899999998 56888899998877554
No 146
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=90.92 E-value=2.9 Score=32.02 Aligned_cols=109 Identities=10% Similarity=0.079 Sum_probs=64.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc----CCCcEEEEEc----
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL----NNGRVHLYRT---- 84 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~----~~~~v~~i~~---- 84 (214)
..||. .+|..+.. ..|..+|+.+..... -+|+||-.... +...+.+.+. ..+ ....+.++..
T Consensus 18 ~~pK~--llpv~g~~-pli~~~l~~l~~~gi----~~iivv~~~~~--~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 87 (200)
T cd02508 18 KRAKP--AVPFGGRY-RLIDFPLSNMVNSGI----RNVGVLTQYKS--RSLNDHLGSG-KEWDLDRKNGGLFILPPQQRK 87 (200)
T ss_pred CCcce--eeEECCee-eeHHHHHHHHHHCCC----CEEEEEeCCCh--HHHHHHHhCC-CcccCCCCCCCEEEeCcccCC
Confidence 45554 77887864 467777777766433 37777776543 2333322210 001 0113445431
Q ss_pred --CCCcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhcCCC
Q psy1766 85 --SKREGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 85 --~~~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~ 132 (214)
+...|.+.|...|..... .+.++++.+|.. .+.-+..+++...+...
T Consensus 88 ~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~ 139 (200)
T cd02508 88 GGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGA 139 (200)
T ss_pred CCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCC
Confidence 345788888888887653 578889999984 45568888887654433
No 147
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=90.56 E-value=4.3 Score=31.36 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=55.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--CCCcEEEEEcCCCcchHHHHHhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NNGRVHLYRTSKREGLIRARMFG 97 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--~~~~v~~i~~~~~~G~~~a~n~g 97 (214)
.+|..+. ..+..+|..+.+.... +|+||-+... +.++++..+. .+..+.++..+...|.+.+...+
T Consensus 23 ll~~~g~--pli~~~l~~l~~~~~~----~iivv~~~~~------~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~ 90 (220)
T cd06426 23 MLKVGGK--PILETIIDRFIAQGFR----NFYISVNYLA------EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLL 90 (220)
T ss_pred cCeECCc--chHHHHHHHHHHCCCc----EEEEECccCH------HHHHHHHCCccccCccEEEEECCCCCcchHHHHHH
Confidence 4556565 5788888887765332 6666544322 2333333221 02345555544556767776544
Q ss_pred hhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCC
Q psy1766 98 AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT 131 (214)
Q Consensus 98 ~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~ 131 (214)
.. ...+.++++.+|... ...+..+++.+....
T Consensus 91 ~~-~~~~~~lv~~~D~i~-~~~~~~l~~~~~~~~ 122 (220)
T cd06426 91 PE-KPTDPFLVMNGDILT-NLNYEHLLDFHKENN 122 (220)
T ss_pred Hh-hCCCCEEEEcCCEee-ccCHHHHHHHHHhcC
Confidence 43 335678888899755 445778888775543
No 148
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=90.54 E-value=4.8 Score=31.68 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cCCCcEEEEEcCCCcc
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LNNGRVHLYRTSKREG 89 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~~~~v~~i~~~~~~G 89 (214)
..||. .+|.-+ . ..+..+|.++.+... -+|+||-.... .+.+.++... + +.++.+...+...|
T Consensus 20 ~~pK~--llpv~~-~-pli~~~l~~l~~~gi----~~i~vv~~~~~-----~~~~~~~l~~~~~~-~~~i~~~~~~~~~G 85 (240)
T cd02538 20 VVSKQ--LLPVYD-K-PMIYYPLSTLMLAGI----REILIISTPED-----LPLFKELLGDGSDL-GIRITYAVQPKPGG 85 (240)
T ss_pred CCCce--eeEECC-E-EhHHHHHHHHHHCCC----CEEEEEeCcch-----HHHHHHHHhccccc-CceEEEeeCCCCCC
Confidence 44554 445544 3 678888888776433 27777654321 1223333221 1 22455555555678
Q ss_pred hHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766 90 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 90 ~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 128 (214)
.+.|...+......+-++++.+|..+.+.-+..+++...
T Consensus 86 ~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~~~~ 124 (240)
T cd02538 86 LAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQRAA 124 (240)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHHHHH
Confidence 888988888877656566668887765555777776654
No 149
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.34 E-value=4 Score=36.09 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=62.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|.-+. ..|...|+.+.+... .+|+|+-.... +.++++... .++.++..+...|.+.+.-.|++
T Consensus 29 llpi~gk--pli~~~l~~l~~~gi----~~ivvv~~~~~------~~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~ 93 (481)
T PRK14358 29 LHPVAGR--PMVAWAVKAARDLGA----RKIVVVTGHGA------EQVEAALQG---SGVAFARQEQQLGTGDAFLSGAS 93 (481)
T ss_pred ecEECCe--eHHHHHHHHHHhCCC----CeEEEEeCCCH------HHHHHHhcc---CCcEEecCCCcCCcHHHHHHHHH
Confidence 3455444 577788888766532 37777654322 234443332 36777776667788888888877
Q ss_pred hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcCCC
Q psy1766 100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN 132 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~~ 132 (214)
... .+-++++++|. .+.+..+..+++...+...
T Consensus 94 ~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~ 129 (481)
T PRK14358 94 ALTEGDADILVLYGDTPLLRPDTLRALVADHRAQGS 129 (481)
T ss_pred HhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhcCC
Confidence 653 22366789998 5678889999887755444
No 150
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=90.25 E-value=4.4 Score=32.30 Aligned_cols=104 Identities=9% Similarity=0.038 Sum_probs=59.7
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEE---------E
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLY---------R 83 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i---------~ 83 (214)
..||. .+|.-+. ..|..++..+.+... -+|+||-.-.. +...+.+.+.... ...+.+. .
T Consensus 18 ~~pK~--llpv~~~--p~i~~~~~~~~~~gi----~~i~iv~~~~~--~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 85 (253)
T cd02524 18 LKPKP--MVEIGGR--PILWHIMKIYSHYGH----NDFILCLGYKG--HVIKEYFLNYFLH--NSDVTIDLGTNRIELHN 85 (253)
T ss_pred CCCce--EEEECCE--EHHHHHHHHHHhCCC----ceEEEECCCCH--HHHHHHHHhhhhh--cCceeEeecccceeeec
Confidence 44554 6666554 466667777665432 27777665433 3344444332211 1122221 1
Q ss_pred ------------cCCCcchHHHHHhhhhhcCC-CEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 84 ------------TSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 84 ------------~~~~~G~~~a~n~g~~~a~g-d~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
.....|.+.+.-.+.+...+ +.++++++|.....+. ..+++....
T Consensus 86 ~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 86 SDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred ccccccceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 11234567777778887765 8899999998887766 888876544
No 151
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=90.19 E-value=4.5 Score=35.15 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..||- .+|.-+. ..|..+|+++.+. . . +|+|+-+.. .+.+.++.. ..+.++..+...|.+.
T Consensus 17 ~~pK~--l~~v~gk--pli~~~l~~l~~~-~-~---~i~vv~~~~------~~~i~~~~~----~~~~~~~~~~~~g~~~ 77 (448)
T PRK14357 17 KIPKV--LHKISGK--PMINWVIDTAKKV-A-Q---KVGVVLGHE------AELVKKLLP----EWVKIFLQEEQLGTAH 77 (448)
T ss_pred CCCce--eeEECCe--eHHHHHHHHHHhc-C-C---cEEEEeCCC------HHHHHHhcc----cccEEEecCCCCChHH
Confidence 44553 5566554 5788888887764 2 3 676664422 123444332 2455555556678888
Q ss_pred HHHhhhhhcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 93 ARMFGAKYAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 93 a~n~g~~~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
+...++.+.. .+.++++++|. .+....+..+++.+.+.
T Consensus 78 ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~ 117 (448)
T PRK14357 78 AVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRK 117 (448)
T ss_pred HHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhc
Confidence 8888887764 58999999998 46777788888877543
No 152
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=90.17 E-value=4.4 Score=34.49 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=40.8
Q ss_pred cchHHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEe
Q psy1766 88 EGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 88 ~G~~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.|...+...|++....++++++++|.. ++++.++.+++.+......+++|
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 578888889999888899999999975 69999999999875555555555
No 153
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=89.46 E-value=2.6 Score=36.78 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=59.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|..+ . ..|...++.+.... . .+|+||-.... +.++++... ..++++..+...|.+.+...+++
T Consensus 27 l~~i~g-k-pli~~~l~~l~~~~-~---~~iivv~~~~~------~~i~~~~~~---~~~~~v~~~~~~Gt~~al~~a~~ 91 (456)
T PRK14356 27 LQTLLG-E-PMLRFVYRALRPLF-G---DNVWTVVGHRA------DMVRAAFPD---EDARFVLQEQQLGTGHALQCAWP 91 (456)
T ss_pred ecccCC-C-cHHHHHHHHHHhcC-C---CcEEEEECCCH------HHHHHhccc---cCceEEEcCCCCCcHHHHHHHHH
Confidence 344444 3 57777777765432 2 26766644322 233333322 35677776666787777777766
Q ss_pred hc---CCCEEEEEcCCC-ccCcCchHHHHHHHh
Q psy1766 100 YA---TGKVLVFLDSHI-EVNTHWLEPLLVPIA 128 (214)
Q Consensus 100 ~a---~gd~i~~lD~D~-~~~~~~l~~l~~~~~ 128 (214)
.. ..++++++++|. .++++.++.+++...
T Consensus 92 ~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 92 SLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred HHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 54 358999999998 568888999888765
No 154
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=89.34 E-value=7.9 Score=29.42 Aligned_cols=94 Identities=9% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.++..+ . ..+...++.+.... .. +|+||-+..+ +.+...++. . ...+.. ....|.......|++
T Consensus 21 Ll~i~G-k-plI~~vi~~l~~~~-i~---~I~Vv~~~~~--~~~~~~l~~----~---~~~~~~-~~g~G~~~~l~~al~ 84 (183)
T TIGR00454 21 LIEVCG-R-CLIDHVLSPLLKSK-VN---NIIIATSPHT--PKTEEYINS----A---YKDYKN-ASGKGYIEDLNECIG 84 (183)
T ss_pred EeEECC-E-EHHHHHHHHHHhCC-CC---EEEEEeCCCH--HHHHHHHhh----c---CcEEEe-cCCCCHHHHHHHHhh
Confidence 344444 4 67778888876543 22 7777665433 333333332 1 222333 567788888888988
Q ss_pred hc-CCCEEEEEcCCCc-cCcCchHHHHHHHhc
Q psy1766 100 YA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAE 129 (214)
Q Consensus 100 ~a-~gd~i~~lD~D~~-~~~~~l~~l~~~~~~ 129 (214)
.. ..+.++++-+|.. +.+..+..+++.+..
T Consensus 85 ~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~ 116 (183)
T TIGR00454 85 ELYFSEPFLVVSSDLINLRSKIIDSIVDYYYC 116 (183)
T ss_pred cccCCCCEEEEeCCcCcCCHHHHHHHHHHHHh
Confidence 53 3577889999987 589999999998744
No 155
>KOG2571|consensus
Probab=89.27 E-value=4.1 Score=38.37 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccCcCchHHHHHHHhcCCCE-EEEee
Q psy1766 104 KVLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPI 138 (214)
Q Consensus 104 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~-vv~~~ 138 (214)
+||+++|+|..+.|+.+..|++.++.++.+ .+|+.
T Consensus 442 ~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~ 477 (862)
T KOG2571|consen 442 DYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGR 477 (862)
T ss_pred eEEEEecCCCccCcHHHHHHHHHhccCcccceeccc
Confidence 578999999999999999999999876654 45553
No 156
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=89.09 E-value=4.8 Score=28.53 Aligned_cols=82 Identities=11% Similarity=0.102 Sum_probs=47.9
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc--CCCEEEEEcCCCc-cCcCchHHHH
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIE-VNTHWLEPLL 124 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~-~~~~~l~~l~ 124 (214)
++++|.-++.. +.. ....... ...+.++.+ ...+.+.-++.+++.+ ..+-++++-+|+. ++++.|.+..
T Consensus 11 ~~~~l~~~~~~--~~~--~~~~~~~---~~~~~~~~Q-~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~ 82 (122)
T PF09837_consen 11 ADVVLAYTPDG--DHA--AFRQLWL---PSGFSFFPQ-QGGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF 82 (122)
T ss_dssp SEEEEEE------TTH--HHHHHHH----TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred cCEEEEEcCCc--cHH--HHhcccc---CCCCEEeec-CCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 57777777765 222 2221111 246667664 4556777788887776 5678999999998 6889999998
Q ss_pred HHHhcCCCEEEEee
Q psy1766 125 VPIAERTNTVTVPI 138 (214)
Q Consensus 125 ~~~~~~~~~vv~~~ 138 (214)
+.+++. ++|++|.
T Consensus 83 ~~L~~~-d~VlgPa 95 (122)
T PF09837_consen 83 EALQRH-DVVLGPA 95 (122)
T ss_dssp HHTTT--SEEEEEB
T ss_pred HHhccC-CEEEeec
Confidence 888655 7778874
No 157
>PLN02190 cellulose synthase-like protein
Probab=89.01 E-value=1.2 Score=41.05 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=46.9
Q ss_pred CCCceEEEEEEeC---CCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 13 TLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 13 ~~p~vSVIIp~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
++|.|.|.|++++ |+...+..++.|+++-+||..+.-+.|.|||.. .-|.+.+.+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s--~LT~~al~E 148 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCS--PLTYFSLKE 148 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCc--HhHHHHHHH
Confidence 5799999999999 666788899999999999998788899999988 666665543
No 158
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=88.85 E-value=6.1 Score=33.45 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=36.9
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
+.+-|||-++|+. ++|+..|+||.+...-.. .-+|+.-|.-. ++..++++.
T Consensus 31 ~~~vivvqVH~r~-~yl~~li~sL~~~~~I~~-~llifSHd~~~--~ein~~v~~ 81 (356)
T PF05060_consen 31 DSIVIVVQVHNRP-EYLKLLIDSLSQARGIEE-ALLIFSHDFYS--EEINDLVQS 81 (356)
T ss_pred CCEEEEEEECCcH-HHHHHHHHHHHHhhCccc-eEEEEeccCCh--HHHHHHHHh
Confidence 4688888899999 999999999987765542 45566666655 455555544
No 159
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=88.83 E-value=11 Score=31.76 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--------
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-------- 86 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-------- 86 (214)
+.+.|+..+=+.-+..+..+|.|++..... ..+.+.|++|+-+ ++..+.++++..++ +..+.++..+.
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is--~e~~~~l~~l~~~~-~~~i~~~~id~~~~~~~~~ 99 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYIS--DADKQRFSALAKQY-NTRINIYLINCERLKSLPS 99 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCC--HHHHHHHHHHHHhc-CCeEEEEEeCHHHHhCCcc
Confidence 456666666434378999999999865433 2368888888877 67778888887776 45666654321
Q ss_pred --Ccch-HHHHHhhhhhc--CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766 87 --REGL-IRARMFGAKYA--TGKVLVFLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 87 --~~G~-~~a~n~g~~~a--~gd~i~~lD~D~~~~~~~l~~l~~~ 126 (214)
+... ...|-...+.- .-+-|+.||+|..+..+ |..+...
T Consensus 100 ~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~~~ 143 (334)
T PRK15171 100 TKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELIDL 143 (334)
T ss_pred cCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHHhc
Confidence 1111 22233333333 46889999999988765 5666544
No 160
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=88.60 E-value=1.3 Score=42.45 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHh--cCCCCCccEEEEEECCCCC----CCChHHHHHHHHhhc--------CCCcEEEEEcCCCcc-----
Q psy1766 29 ATLYRSVQTLLS--RTGQSLLHEIILVNDFSEY----PSNLHGEVETFVKGL--------NNGRVHLYRTSKREG----- 89 (214)
Q Consensus 29 ~~l~~~l~sl~~--q~~~~~~~eiivVdd~s~~----~d~t~~~~~~~~~~~--------~~~~v~~i~~~~~~G----- 89 (214)
+.++..|+.+.+ +..+. |--+.+||+.- ..+-..+++-+.... .-|.+.|+..+++.|
T Consensus 457 Ee~k~RIe~l~a~~~~~p~---~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~ 533 (1079)
T PLN02638 457 EEFKVRINGLVAKAQKVPE---EGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHK 533 (1079)
T ss_pred HHHHHHHHHHHhhccccCC---ccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCccc
Confidence 566777777762 33433 44556777710 012233444333110 015667887777666
Q ss_pred hHHHHHhhhhh----cCCCEEEEEcCCCccC-cCchHHHHHHHhc
Q psy1766 90 LIRARMFGAKY----ATGKVLVFLDSHIEVN-THWLEPLLVPIAE 129 (214)
Q Consensus 90 ~~~a~n~g~~~----a~gd~i~~lD~D~~~~-~~~l~~l~~~~~~ 129 (214)
+++|+|..++. ++|+||+.+|.|..+. +..+.+.+-.+..
T Consensus 534 KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 534 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred ccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 78999999954 4899999999999875 8999998888743
No 161
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=88.55 E-value=4.3 Score=31.24 Aligned_cols=58 Identities=9% Similarity=0.115 Sum_probs=47.5
Q ss_pred cEEEEEcCCCc-chHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEE
Q psy1766 78 RVHLYRTSKRE-GLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVT 135 (214)
Q Consensus 78 ~v~~i~~~~~~-G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv 135 (214)
.+.++.-.... |+-.+.-.|++++.+++++++-.|.-+ +++.++.+.....+....++
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~ 120 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAIV 120 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcEE
Confidence 46677655555 999999999999999999999999985 88999999998876554333
No 162
>KOG1022|consensus
Probab=88.49 E-value=2.5 Score=37.48 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=75.5
Q ss_pred CCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 11 ~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
+..+...+.|+-+|++- +.|.+.+..... .+.. .+|+||=|+-.. ..-.+.++... ...+++..+.+| .
T Consensus 439 k~~~qgFTlim~TYdR~-d~L~k~v~~ys~--vPsL-~kIlVVWNnq~k-~PP~es~~~~~----~VPlr~r~qkeN--s 507 (691)
T KOG1022|consen 439 KGHSQGFTLIMLTYDRV-DLLKKLVKHYSR--VPSL-KKILVVWNNQGK-NPPPESLEPDI----AVPLRFRQQKEN--S 507 (691)
T ss_pred CCcccceeeeeehHHHH-HHHHHHHHHHhh--CCCc-ceEEEEecCCCC-CCChhhccccC----CccEEEEehhhh--h
Confidence 45666899999999988 888887776633 2333 688888664221 11122222221 135666555443 2
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
-.+|-.-....+.+-|+-+|+|.+++.+-|.--.+..++.++..|+
T Consensus 508 LnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVG 553 (691)
T KOG1022|consen 508 LNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVG 553 (691)
T ss_pred hhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccceec
Confidence 2333334455688999999999999988899988989888877664
No 163
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=88.48 E-value=9.7 Score=29.32 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCC---E
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK---V 105 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd---~ 105 (214)
..+..+++.+++....+ +|+|.-|.. ...+.+++ + +..+...+ +.-.........++..+..+ +
T Consensus 25 pLi~~~i~~a~~s~~~d---~IvVaTd~~----~i~~~~~~----~-g~~v~~~~-~~~~~~~~r~~~~~~~~~~~~~~~ 91 (217)
T PF02348_consen 25 PLIEYVIERAKQSKLID---EIVVATDDE----EIDDIAEE----Y-GAKVIFRR-GSLADDTDRFIEAIKHFLADDEDI 91 (217)
T ss_dssp EHHHHHHHHHHHTTTTS---EEEEEESSH----HHHHHHHH----T-TSEEEE---TTSSSHHHHHHHHHHHHTCSTTSE
T ss_pred cHHHHHHHHHHhCCCCC---eEEEeCCCH----HHHHHHHH----c-CCeeEEcC-hhhcCCcccHHHHHHHhhhhHHhh
Confidence 67888898888766655 777665543 24444444 3 23443333 22323333444556666555 9
Q ss_pred EEEEcCCCcc-CcCchHHHHHHHhcCCC
Q psy1766 106 LVFLDSHIEV-NTHWLEPLLVPIAERTN 132 (214)
Q Consensus 106 i~~lD~D~~~-~~~~l~~l~~~~~~~~~ 132 (214)
++.+.+|+.+ .|..+.++++.+.+...
T Consensus 92 vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 92 VVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp EEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred ccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 9999999885 89999999999876544
No 164
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=88.48 E-value=8.1 Score=31.88 Aligned_cols=106 Identities=14% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH-------------------HHh
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET-------------------FVK 72 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~-------------------~~~ 72 (214)
...||. .+|..+. ..|...|+.+.+... -+|+|+-.... +...+.+.. +..
T Consensus 22 ~~~PKp--LvpV~gk--PiI~~vl~~l~~~Gi----~~ivivv~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T TIGR01105 22 KAIPKE--MLPIVDK--PMIQYIVDEIVAAGI----KEIVLVTHASK--NAVENHFDTSYELESLLEQRVKRQLLAEVQS 91 (297)
T ss_pred CCCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEecCCh--HHHHHHHhchHHHHHHHHHhcchhhhhhhhh
Confidence 344554 6677665 477777777776543 27777766543 233332211 000
Q ss_pred h-cCCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEEEEcCCCccCc-------CchHHHHHHHh
Q psy1766 73 G-LNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHIEVNT-------HWLEPLLVPIA 128 (214)
Q Consensus 73 ~-~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~~lD~D~~~~~-------~~l~~l~~~~~ 128 (214)
. ..+.+++++..++..|.+.|.-.+..... .++++++ +|..+++ -.+..+++...
T Consensus 92 ~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 92 ICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred cCCCCceEEEeeCCCcCchHHHHHHHHHHhCCCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 0 00235777777888999999999988775 3565555 8876653 25777877664
No 165
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=88.45 E-value=3.8 Score=31.99 Aligned_cols=95 Identities=16% Similarity=0.314 Sum_probs=60.1
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Ccch
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGL 90 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~ 90 (214)
..||. .+|.-+ . ..+...|.++.+... -+|+||-.... +.+.++.... .++.++.++. ..|.
T Consensus 18 ~~pK~--l~~~~g-~-~li~~~l~~l~~~gi----~~i~vv~~~~~------~~~~~~~~~~--~~~~~~~~~~~~~~g~ 81 (229)
T cd02523 18 DRPKC--LLEING-K-PLLERQIETLKEAGI----DDIVIVTGYKK------EQIEELLKKY--PNIKFVYNPDYAETNN 81 (229)
T ss_pred CCCce--eeeECC-E-EHHHHHHHHHHHCCC----ceEEEEeccCH------HHHHHHHhcc--CCeEEEeCcchhhhCc
Confidence 34554 445444 3 678888888776533 26776655322 2333333321 3677766543 4788
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHH
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
+.+...|+.+. .+.++++.+|..+.++.++.++
T Consensus 82 ~~s~~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 82 IYSLYLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 88888888887 5778899999988776666554
No 166
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.90 E-value=9.4 Score=33.25 Aligned_cols=95 Identities=13% Similarity=0.103 Sum_probs=60.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|.-+. ..+..+|+++.+... .+++|+-.... +.++++.. ..+.++......|.+.+...+++
T Consensus 24 ll~i~Gk--pli~~~l~~l~~~gi----~~iivvv~~~~------~~i~~~~~----~~~~~~~~~~~~g~~~al~~a~~ 87 (458)
T PRK14354 24 LHKVCGK--PMVEHVVDSVKKAGI----DKIVTVVGHGA------EEVKEVLG----DRSEFALQEEQLGTGHAVMQAEE 87 (458)
T ss_pred hCEeCCc--cHHHHHHHHHHhCCC----CeEEEEeCCCH------HHHHHHhc----CCcEEEEcCCCCCHHHHHHHHHH
Confidence 4455554 578888888876433 25555543221 12333322 23455555556787888888877
Q ss_pred hcC--CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 100 YAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 100 ~a~--gd~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
... .+.++++++|. .+.+..+..+++...+.
T Consensus 88 ~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~ 121 (458)
T PRK14354 88 FLADKEGTTLVICGDTPLITAETLKNLIDFHEEH 121 (458)
T ss_pred HhcccCCeEEEEECCccccCHHHHHHHHHHHHhc
Confidence 653 47899999998 56888899999887543
No 167
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=87.90 E-value=7.4 Score=31.18 Aligned_cols=107 Identities=12% Similarity=0.232 Sum_probs=63.9
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH---H---Hhhc------------
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET---F---VKGL------------ 74 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~---~---~~~~------------ 74 (214)
..||- .+|..+. ..|...|+++.+... -+|+|+-.... ....+.+.. + ..+.
T Consensus 20 ~~pK~--llpv~gk--pli~~~l~~l~~~gi----~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (267)
T cd02541 20 AIPKE--MLPIVDK--PVIQYIVEEAVAAGI----EDIIIVTGRGK--RAIEDHFDRSYELEETLEKKGKTDLLEEVRII 89 (267)
T ss_pred CCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEeCCch--HHHHHHhCCcHHHHHHHHhcccHHHhhhhhcc
Confidence 44543 4566554 678888888876433 26666655433 222222211 0 0000
Q ss_pred -CCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcC--chHHHHHHHhc
Q psy1766 75 -NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAE 129 (214)
Q Consensus 75 -~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~--~l~~l~~~~~~ 129 (214)
.+..+.++..+...|.+.+...++.....+-++++.+|..+... .+..+++...+
T Consensus 90 ~~~~~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 90 SDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred cCCceEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 01245566656668999999988888765667777888876553 58888887643
No 168
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=87.48 E-value=12 Score=29.06 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=60.8
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC-----CCcEEEEEcCCCcchHHHH
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN-----NGRVHLYRTSKREGLIRAR 94 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~-----~~~v~~i~~~~~~G~~~a~ 94 (214)
.+|.-|. ..+..+|+.+.+... -+|+||-.... .+.++.+..++. ...+.++......|.+.+.
T Consensus 25 Llpv~g~--pli~~~l~~l~~~g~----~~iivv~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al 93 (214)
T cd04198 25 LLPVANK--PMIWYPLDWLEKAGF----EDVIVVVPEEE-----QAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSL 93 (214)
T ss_pred cCEECCe--eHHHHHHHHHHHCCC----CeEEEEECHHH-----HHHHHHHHHhcccccCcceeEEEecCCCCcChHHHH
Confidence 5566565 577788888776422 37777765321 223333333210 1123334345678889998
Q ss_pred HhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 95 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 95 n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
..+.....++ ++++.+|.. .+.-+..+++...+....+.+
T Consensus 94 ~~~~~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 94 RHIRKKIKKD-FLVLSCDLI-TDLPLIELVDLHRSHDASLTV 133 (214)
T ss_pred HHHHhhcCCC-EEEEeCccc-cccCHHHHHHHHhccCCcEEE
Confidence 8888876555 677788854 445577777776554444333
No 169
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=87.25 E-value=13 Score=29.88 Aligned_cols=119 Identities=19% Similarity=0.134 Sum_probs=66.7
Q ss_pred CCCceEEEEEEeCCC----------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCC
Q psy1766 13 TLPSTSVIICFYNEH----------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNN 76 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~----------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~ 76 (214)
.++.+++||++=... ...|..+++.+...... .+|+||-+... .+.++.....+ .
T Consensus 21 ~~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i---~~IvVV~~~~~-----~~~~~~~~~~~-~ 91 (252)
T PLN02728 21 KEKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEV---KEIVVVCDPSY-----RDVFEEAVENI-D 91 (252)
T ss_pred ccCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCC---CeEEEEeCHHH-----HHHHHHHHHhc-C
Confidence 445677777764332 14455677766543222 37777765332 22333333332 2
Q ss_pred CcEEEEEcCCCcchHHHHHhhhhhc--CCCEEEEEcCCCc-cCcCchHHHHHHHhcCC-CEEEEeeeeee
Q psy1766 77 GRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT-NTVTVPIIDII 142 (214)
Q Consensus 77 ~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~-~~vv~~~~~~~ 142 (214)
..+.++. ...+.....-.|++.. ..++|++.|++-. ++++.+..+++.+.++. .+.+.|..+.+
T Consensus 92 ~~i~~v~--gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ga~i~~~~~~dti 159 (252)
T PLN02728 92 VPLKFAL--PGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHGAAVLGVPVKATI 159 (252)
T ss_pred CceEEcC--CCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCCeEEEeecchhhE
Confidence 2344432 2334455566677765 3578888888655 58899999998886543 33444554443
No 170
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=87.14 E-value=13 Score=29.41 Aligned_cols=86 Identities=9% Similarity=0.092 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhh---cCC
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKY---ATG 103 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~---a~g 103 (214)
.-|..+++.+.... . .+|+|+-+. +.. .+...++ +++++.. ....|..+. ..+++. ...
T Consensus 25 Pli~~~le~~~~~~-~---d~VvVvt~~----~~i----~~~~~~~---g~~~v~~~~~~~~Gt~r~-~~~~~~l~~~~~ 88 (238)
T TIGR00466 25 PMIVHVAENANESG-A---DRCIVATDD----ESV----AQTCQKF---GIEVCMTSKHHNSGTERL-AEVVEKLALKDD 88 (238)
T ss_pred CHHHHHHHHHHhCC-C---CeEEEEeCH----HHH----HHHHHHc---CCEEEEeCCCCCChhHHH-HHHHHHhCCCCC
Confidence 57788888876432 2 377777442 222 3333333 4444432 222342222 222222 256
Q ss_pred CEEEEEcCCCc-cCcCchHHHHHHHhcC
Q psy1766 104 KVLVFLDSHIE-VNTHWLEPLLVPIAER 130 (214)
Q Consensus 104 d~i~~lD~D~~-~~~~~l~~l~~~~~~~ 130 (214)
++++++++|.- ++++.+..+++.+.+.
T Consensus 89 d~Vli~~gD~Pli~~~~I~~li~~~~~~ 116 (238)
T TIGR00466 89 ERIVNLQGDEPFIPKEIIRQVADNLATK 116 (238)
T ss_pred CEEEEEcCCcCcCCHHHHHHHHHHHhcC
Confidence 89999999988 5899999999988543
No 171
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=87.13 E-value=9.2 Score=28.63 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-CCCcchHHHHHhhhhhc---CCC
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-SKREGLIRARMFGAKYA---TGK 104 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-~~~~G~~~a~n~g~~~a---~gd 104 (214)
..+..+++.+... . .+|+||-+... . + . ...++++.. ....|...+.-.|++.+ +.+
T Consensus 16 ~ll~~~~~~l~~~--~---~~iivv~~~~~--~--------~-~---~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~ 76 (178)
T PRK00576 16 TLVEHVVGIVGQR--C---APVFVMAAPGQ--P--------L-P---ELPAPVLRDELRGLGPLPATGRGLRAAAEAGAR 76 (178)
T ss_pred CHHHHHHHHHhhc--C---CEEEEECCCCc--c--------c-c---cCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCC
Confidence 5677777765432 1 37777754332 1 1 1 123445442 23456677666667654 579
Q ss_pred EEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEE
Q psy1766 105 VLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 105 ~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~ 136 (214)
+++++=+|.-+ +++.++.++.........++.
T Consensus 77 ~~lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~~ 109 (178)
T PRK00576 77 LAFVCAVDMPYLTVELIDDLARPAAQTDAEVVL 109 (178)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHhhcCCCcEEE
Confidence 99999999885 889999998877555444443
No 172
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=86.68 E-value=14 Score=29.43 Aligned_cols=108 Identities=10% Similarity=0.147 Sum_probs=61.6
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH-------------------HHhh
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET-------------------FVKG 73 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~-------------------~~~~ 73 (214)
..||. .+|.-+. ..|...|.++.+... -+|+|+-.... ....+.+.. ...-
T Consensus 20 ~~pK~--llpi~g~--pli~~~l~~l~~~gi----~~v~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (260)
T TIGR01099 20 AIPKE--MLPIVDK--PLIQYVVEEAVEAGI----EDILIVTGRGK--RAIEDHFDTSYELEHQLEKRGKEELLKEVRSI 89 (260)
T ss_pred CCCce--eEEECCE--EHHHHHHHHHHhCCC----CEEEEEeCCcH--HHHHHHhcccHHHHHHHHhhhhHHHHHHhhhc
Confidence 44554 5666554 577778887765432 27777665433 222222210 0000
Q ss_pred cCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcC--chHHHHHHHhcC
Q psy1766 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAER 130 (214)
Q Consensus 74 ~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~--~l~~l~~~~~~~ 130 (214)
.+...+.+.......|.+.+.-.+......+-++++.+|..+... .+..+++...+.
T Consensus 90 ~~~~~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~ 148 (260)
T TIGR01099 90 SPLATIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKY 148 (260)
T ss_pred cccceEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHh
Confidence 001235555555677888888888877654556777777776543 688888877543
No 173
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.07 E-value=6.4 Score=34.35 Aligned_cols=96 Identities=8% Similarity=0.070 Sum_probs=60.7
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|..+. ..|...++.+..... .+++++-.... +.+++.... .++.++..+...|.+.+...|+.
T Consensus 27 l~~i~gk--pli~~~i~~l~~~gi----~~i~vv~~~~~------~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~a~~ 91 (456)
T PRK09451 27 LHTLAGK--PMVQHVIDAANELGA----QHVHLVYGHGG------DLLKQTLAD---EPLNWVLQAEQLGTGHAMQQAAP 91 (456)
T ss_pred cceeCCh--hHHHHHHHHHHhcCC----CcEEEEECCCH------HHHHHhhcc---CCcEEEECCCCCCcHHHHHHHHH
Confidence 3444443 567777777765432 26666654321 233343322 36677766666788888888887
Q ss_pred hcC-CCEEEEEcCCC-ccCcCchHHHHHHHhcC
Q psy1766 100 YAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER 130 (214)
Q Consensus 100 ~a~-gd~i~~lD~D~-~~~~~~l~~l~~~~~~~ 130 (214)
... .+.++++++|. .+.+..+..+++...+.
T Consensus 92 ~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~ 124 (456)
T PRK09451 92 FFADDEDILMLYGDVPLISVETLQRLRDAKPQG 124 (456)
T ss_pred hhccCCcEEEEeCCcccCCHHHHHHHHHHhhcC
Confidence 653 57899999998 46778888888765433
No 174
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=85.79 E-value=16 Score=29.13 Aligned_cols=112 Identities=9% Similarity=0.110 Sum_probs=60.3
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCC---------------
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG--------------- 77 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~--------------- 77 (214)
..||. .+|.-+. ..|..+|.++.+.. - -+|+||-.... +...+.+.++.....+.
T Consensus 19 ~~pK~--llpv~g~--pii~~~l~~l~~~g-i---~~i~iv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (254)
T TIGR02623 19 LRPKP--MVEIGGK--PILWHIMKIYSHHG-I---NDFIICCGYKG--YVIKEYFANYFLHMSDVTFHMADNTMEVHHKR 88 (254)
T ss_pred CCCcc--eeEECCE--EHHHHHHHHHHHCC-C---CEEEEEcCCCH--HHHHHHHHhhhhcccCeeEEeccccccccccc
Confidence 34554 5566554 47777777776542 2 37777755332 23333333321100001
Q ss_pred ----cEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh-cCCCEEE
Q psy1766 78 ----RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNTVT 135 (214)
Q Consensus 78 ----~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~vv 135 (214)
.+.+.......|.+.|...+.+....+.++++++|.....+ +..+++... .+.+..+
T Consensus 89 ~~~~~~~~~~~~~~~gt~~al~~~~~~i~~e~flv~~gD~i~~~d-l~~~~~~h~~~~~d~tl 150 (254)
T TIGR02623 89 VEPWRVTLVDTGESTQTGGRLKRVREYLDDEAFCFTYGDGVADID-IKALIAFHRKHGKKATV 150 (254)
T ss_pred CCccceeeeecCCcCCcHHHHHHHHHhcCCCeEEEEeCCeEecCC-HHHHHHHHHHcCCCEEE
Confidence 12222222346777788777777666677799999876544 666666553 3444433
No 175
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=85.73 E-value=12 Score=32.42 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=64.4
Q ss_pred CCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 10 FPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 10 ~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
+.+++||| +=|.-.. +-|...|+++...... .+++|-..-. + .+++...+. ..+.++.+.+..|
T Consensus 16 MkS~lPKV--LH~vaGk--pMl~hVi~~a~~l~~~----~i~vVvGh~a--e----~V~~~~~~~--~~v~~v~Q~eqlG 79 (460)
T COG1207 16 MKSDLPKV--LHPVAGK--PMLEHVIDAARALGPD----DIVVVVGHGA--E----QVREALAER--DDVEFVLQEEQLG 79 (460)
T ss_pred ccCCCccc--chhccCc--cHHHHHHHHHhhcCcc----eEEEEEcCCH--H----HHHHHhccc--cCceEEEecccCC
Confidence 44566663 2233333 5666677776554443 4444433222 2 233322221 3588888889999
Q ss_pred hHHHHHhhhhhc-C-CC-EEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766 90 LIRARMFGAKYA-T-GK-VLVFLDSHIEV-NTHWLEPLLVPIA 128 (214)
Q Consensus 90 ~~~a~n~g~~~a-~-gd-~i~~lD~D~~~-~~~~l~~l~~~~~ 128 (214)
-+.|.-.++.+- + .+ .++++.+|..+ .++.|+.|++...
T Consensus 80 TgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~ 122 (460)
T COG1207 80 TGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHP 122 (460)
T ss_pred hHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhh
Confidence 999999998876 2 23 57788888875 8899998887764
No 176
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=84.97 E-value=17 Score=29.15 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=64.7
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC-----C--cc----hHHHHHh
Q psy1766 28 PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK-----R--EG----LIRARMF 96 (214)
Q Consensus 28 ~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~-----~--~G----~~~a~n~ 96 (214)
...+..++.|++..+... +.+.|++|+-+ ++..+.++++..++ +..+.++.... . .. .+.++ .
T Consensus 13 ~~~~~v~l~Sll~nn~~~--~~fyil~~~is--~e~~~~l~~~~~~~-~~~i~~i~i~~~~~~~~~~~~~~~~~~y~r-L 86 (248)
T cd06432 13 ERFLRIMMLSVMKNTKSP--VKFWFIKNFLS--PQFKEFLPEMAKEY-GFEYELVTYKWPRWLHKQTEKQRIIWGYKI-L 86 (248)
T ss_pred HHHHHHHHHHHHHcCCCC--EEEEEEeCCCC--HHHHHHHHHHHHHh-CCceEEEEecChhhhhcccccchhHHHHHH-H
Confidence 477889999999876434 79999999887 77888888888776 44555554321 0 01 11222 1
Q ss_pred hhh-hc--CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 97 GAK-YA--TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 97 g~~-~a--~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.+. .- .-+-+++||+|..+..+ |.++...=-.+...++++
T Consensus 87 ~~~~lLP~~vdkvLYLD~Dilv~~d-L~eL~~~dl~~~~~Aav~ 129 (248)
T cd06432 87 FLDVLFPLNVDKVIFVDADQIVRTD-LKELMDMDLKGAPYGYTP 129 (248)
T ss_pred HHHHhhhhccCEEEEEcCCceeccc-HHHHHhcCcCCCeEEEee
Confidence 122 22 35889999999988744 666665412233444443
No 177
>PLN02195 cellulose synthase A
Probab=83.84 E-value=1.6 Score=41.46 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=39.6
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhh----cCCCEEEEEcCCCccCc-CchHHHHHHHhc
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKY----ATGKVLVFLDSHIEVNT-HWLEPLLVPIAE 129 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~~~-~~l~~l~~~~~~ 129 (214)
|.+.|+..+++.| +++|+|.+++. ++++||+.+|+|..+.+ +++.+.+-.+..
T Consensus 419 P~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D 481 (977)
T PLN02195 419 PRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMD 481 (977)
T ss_pred ceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccC
Confidence 3445555444444 78899999975 47999999999988755 799998887743
No 178
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=83.29 E-value=20 Score=30.01 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=59.3
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECC-CCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF-SEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLI 91 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~-s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~ 91 (214)
..||. .+|.-+. ..+..+|.++.+.. . .+|+|+-.. .. +...+.+... ..+ +..+.++..+...|.+
T Consensus 19 ~~pK~--l~pv~g~--pli~~~l~~l~~~g-i---~~i~vv~~~~~~--~~i~~~~~~~-~~~-~~~~~~~~~~~~~G~~ 86 (353)
T TIGR01208 19 TRPKQ--LIPVANK--PILQYAIEDLAEAG-I---TDIGIVVGPVTG--EEIKEIVGEG-ERF-GAKITYIVQGEPLGLA 86 (353)
T ss_pred CCCcc--ccEECCE--eHHHHHHHHHHHCC-C---CEEEEEeCCCCH--HHHHHHHhcc-ccc-CceEEEEECCCCCCHH
Confidence 34443 3455444 57777888876643 2 277666554 32 2222222210 111 2345666656677888
Q ss_pred HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 92 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 92 ~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
.+.-.++.....+-++++.+|..++ .-+..+++...+
T Consensus 87 ~al~~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~ 123 (353)
T TIGR01208 87 HAVYTARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEE 123 (353)
T ss_pred HHHHHHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHh
Confidence 8888888876544455667888775 456777776643
No 179
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=82.77 E-value=11 Score=29.70 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=51.7
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc-----CCCcchH
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT-----SKREGLI 91 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~-----~~~~G~~ 91 (214)
|..+|.+|+...+.+.+.+..+- .+.+ .=+|-||-.++ +...+.++++...+ ++++++.. -...+..
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~--~~~~--~f~iHiD~k~~--~~~~~~~~~~~~~~--~nv~~v~~r~~v~WG~~S~v 72 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY--HPDN--DFYIHIDKKSP--DYFYEEIKKLISCF--PNVHFVPKRVDVRWGGFSLV 72 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH----TTS--EEEEEE-TTS---HHHHHHHHHHHCT---TTEEE-SS-----TTSHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc--CCCC--EEEEEEcCCCC--hHHHHHHHHhcccC--CceeecccccccccCCccHH
Confidence 45678887744366666666553 2223 24455777766 55666667665654 67777652 1223344
Q ss_pred HHHHhhhhh-----cCCCEEEEEcCCCcc--CcCchHHHHHH
Q psy1766 92 RARMFGAKY-----ATGKVLVFLDSHIEV--NTHWLEPLLVP 126 (214)
Q Consensus 92 ~a~n~g~~~-----a~gd~i~~lD~D~~~--~~~~l~~l~~~ 126 (214)
.|--.+++. ..-+|+++|.+++.+ +...+.+.++.
T Consensus 73 ~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~ 114 (244)
T PF02485_consen 73 EATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLES 114 (244)
T ss_dssp HHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHh
Confidence 444444433 366899999888875 33444444433
No 180
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=82.70 E-value=7.6 Score=31.66 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=44.0
Q ss_pred CCcEEEEEcCCCcchHHHHHhhhhhcCCC-EEEEEcCCCccC-cCchHHHHHHHhcCCC
Q psy1766 76 NGRVHLYRTSKREGLIRARMFGAKYATGK-VLVFLDSHIEVN-THWLEPLLVPIAERTN 132 (214)
Q Consensus 76 ~~~v~~i~~~~~~G~~~a~n~g~~~a~gd-~i~~lD~D~~~~-~~~l~~l~~~~~~~~~ 132 (214)
..++.++++++..|.+.|.-.|-.....+ +.+.|-+|.... +..+.+|++..++...
T Consensus 96 ~~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~ 154 (291)
T COG1210 96 LVTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGG 154 (291)
T ss_pred CceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCC
Confidence 46788999999999999999999988776 555555554443 6889999999866443
No 181
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=79.41 E-value=15 Score=29.13 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=67.8
Q ss_pred CceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEE
Q psy1766 15 PSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHL 81 (214)
Q Consensus 15 p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~ 81 (214)
+++.||||++=.. ..-+.++.+...+. .- .+++|.-|.- ...+.++++ +..+..
T Consensus 2 ~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~---~rvvVATDde----~I~~av~~~-----G~~avm 68 (247)
T COG1212 2 MKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GA---DRVVVATDDE----RIAEAVQAF-----GGEAVM 68 (247)
T ss_pred CceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CC---CeEEEEcCCH----HHHHHHHHh-----CCEEEe
Confidence 5688999996432 12334444443332 22 3777765542 344455553 344545
Q ss_pred EEcCCCcchHHHHHhhhhhc--CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEEEEeeeeee
Q psy1766 82 YRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPIIDII 142 (214)
Q Consensus 82 i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~vv~~~~~~~ 142 (214)
-+.+.+.|.-+.....-+.. ..++|+=+-+|..+ +|.-+..+++.+++....++.+.....
T Consensus 69 T~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~ 132 (247)
T COG1212 69 TSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKIT 132 (247)
T ss_pred cCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecC
Confidence 45455555444333333332 56899999999874 889999999999877666665554443
No 182
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=78.62 E-value=7.8 Score=32.28 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHH--HHHhhcCCCcEEEEEc--CCCcc------hHHHHH
Q psy1766 26 EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVE--TFVKGLNNGRVHLYRT--SKREG------LIRARM 95 (214)
Q Consensus 26 ~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~--~~~~~~~~~~v~~i~~--~~~~G------~~~a~n 95 (214)
++ ....+||+|+...-+.. |||+.---.. | .+.+. ++... .+++..++.. ....+ .-.+-.
T Consensus 18 ~~-~~t~~~l~siR~~~P~A---~IILSTW~~~--d--~~~l~~D~vv~s-~DPG~~~~~~~~~~~~~~~NiNrQi~St~ 88 (311)
T PF07507_consen 18 EP-DITKNCLASIRKHFPGA---EIILSTWEGQ--D--ISGLDYDQVVIS-DDPGSNVVLYKKDGKPGPNNINRQIVSTL 88 (311)
T ss_pred cc-hhHHHHHHHHHHhCCCC---EEEEECCCCC--C--cccCCcceEEec-CCCCcceeeccCCCCCcccchhHHHHHHH
Confidence 44 78899999987665554 9998532221 1 11111 11100 1233333211 11111 112334
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
.|+++|+.+|++=+=+|..+..+-+-.+.+..
T Consensus 89 aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~ 120 (311)
T PF07507_consen 89 AGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKY 120 (311)
T ss_pred HHHHHhCCceEEEEcccccccchHHHHHHHHh
Confidence 69999999999999999998666555555544
No 183
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=78.54 E-value=28 Score=29.64 Aligned_cols=82 Identities=11% Similarity=0.113 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcchHHHHHhhhhhcCCCEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGKVLV 107 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G~~~a~n~g~~~a~gd~i~ 107 (214)
..|..+++.+... . .+|+|+-+.+. . +.+. . .+++++... ...|+..+...|++++..+.++
T Consensus 201 ~ll~~~l~~l~~~--~---~~vvV~~~~~~-----~---~~~~-~---~~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~l 263 (369)
T PRK14490 201 NQLVHTAALLRPH--C---QEVFISCRAEQ-----A---EQYR-S---FGIPLITDSYLDIGPLGGLLSAQRHHPDAAWL 263 (369)
T ss_pred cHHHHHHHHHHhh--C---CEEEEEeCCch-----h---hHHh-h---cCCcEEeCCCCCCCcHHHHHHHHHhCCCCcEE
Confidence 5667777776542 2 26777554332 1 1121 1 255566533 2468788888899888888889
Q ss_pred EEcCCCcc-CcCchHHHHHHH
Q psy1766 108 FLDSHIEV-NTHWLEPLLVPI 127 (214)
Q Consensus 108 ~lD~D~~~-~~~~l~~l~~~~ 127 (214)
++=+|..+ +++.++.++...
T Consensus 264 v~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 264 VVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred EEeCCcCCCCHHHHHHHHHhc
Confidence 99999875 889999988865
No 184
>KOG1111|consensus
Probab=77.60 E-value=10 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.270 Sum_probs=45.3
Q ss_pred eEEEEE---EeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE
Q psy1766 17 TSVIIC---FYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR 83 (214)
Q Consensus 17 vSVIIp---~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~ 83 (214)
++|++. .||..++.|.+.|-++.++.+. .++||+-||+.. +...+.++++.-+ .++.++.
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~---vrfii~GDGPk~-i~lee~lEk~~l~---~rV~~lG 258 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKHPE---VRFIIIGDGPKR-IDLEEMLEKLFLQ---DRVVMLG 258 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcCCC---eeEEEecCCccc-chHHHHHHHhhcc---CceEEec
Confidence 444443 3777778888999998877654 499999999987 7888888887654 4777764
No 185
>KOG3738|consensus
Probab=77.31 E-value=0.87 Score=38.90 Aligned_cols=21 Identities=62% Similarity=1.320 Sum_probs=18.0
Q ss_pred cchhccccccccccceeccCC
Q psy1766 189 SALVRGGFNWGLHFKWENLPK 209 (214)
Q Consensus 189 ~~~~~ggf~~~~~~~~~~~~~ 209 (214)
+...-|||||.+.|+||+|+.
T Consensus 255 sadLrGGFDWsLhF~We~~~~ 275 (559)
T KOG3738|consen 255 SADLRGGFDWSLHFKWEQMQL 275 (559)
T ss_pred hhhhcCCcceEEEEEehhcCH
Confidence 344779999999999999986
No 186
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=76.60 E-value=10 Score=30.82 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=47.4
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEE--ECCCCCCCChHHHHHHHHh-hcCCCcEEEEEcCCCcch----
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV--NDFSEYPSNLHGEVETFVK-GLNNGRVHLYRTSKREGL---- 90 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivV--dd~s~~~d~t~~~~~~~~~-~~~~~~v~~i~~~~~~G~---- 90 (214)
.|||++.+........+|..|.+ ....+..||+.- +|-+. ...+.+..... .. .+++-+..+.-.+.
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~-~g~~LPIEI~~~~~~dl~~---~~~~~l~~~q~v~~--vd~~~~~~~~~~~~~~~~ 76 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRR-LGNTLPIEIIYPGDDDLSK---EFCEKLLPDQDVWF--VDASCVIDPDYLGKSFSK 76 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHH-hCCCCCEEEEeCCccccCH---HHHHHHhhhhhhhe--ecceEEeecccccccccc
Confidence 48899988663444455555544 444454788877 34332 33333332000 00 12222221222221
Q ss_pred --HHHHHhhhhhcCCCEEEEEcCCCccCcC
Q psy1766 91 --IRARMFGAKYATGKVLVFLDSHIEVNTH 118 (214)
Q Consensus 91 --~~a~n~g~~~a~gd~i~~lD~D~~~~~~ 118 (214)
-...-.|+-.++-+=|++||+|..+-.+
T Consensus 77 ~~~~~K~lA~l~ssFeevllLDaD~vpl~~ 106 (271)
T PF11051_consen 77 KGFQNKWLALLFSSFEEVLLLDADNVPLVD 106 (271)
T ss_pred CCchhhhhhhhhCCcceEEEEcCCcccccC
Confidence 1122234555677889999999987443
No 187
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=75.80 E-value=16 Score=27.85 Aligned_cols=93 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCC--CCCChHHHHHHHHhhcCCCcEEEEEcCCC-cch----HHHHHhhhhhcC
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSE--YPSNLHGEVETFVKGLNNGRVHLYRTSKR-EGL----IRARMFGAKYAT 102 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~--~~d~t~~~~~~~~~~~~~~~v~~i~~~~~-~G~----~~a~n~g~~~a~ 102 (214)
.++++-.+...+.... ..+++|-..+. + ....+.+.+-.+++ ..+-....... .+. -.+.+.+.+++.
T Consensus 5 ~IR~TW~~~~~~~~~~--~~~~FvvG~~~~~~-~~~~~~l~~E~~~y--~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~ 79 (195)
T PF01762_consen 5 AIRETWGNQRNFKGVR--VKVVFVVGESPNSD-SDLQEALQEEAEKY--GDILQGDFVDSYRNLTLKTLAGLKWASKHCP 79 (195)
T ss_pred HHHHHHhcccccCCCc--EEEEEEEecCCCCc-HHHHHHhhhhhhhc--CceEeeecccccchhhHHHHHHHHHHHhhCC
Confidence 4445554444333333 46666554444 2 23444455545555 34433333222 222 245555556665
Q ss_pred -CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 103 -GKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 103 -gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
.+|++.+|+|..+.+.-|...+...
T Consensus 80 ~~~~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 80 NAKYVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred chhheeecCcEEEEehHHhhhhhhhc
Confidence 7999999999999888777777665
No 188
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=73.56 E-value=65 Score=28.47 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=54.3
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA 93 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a 93 (214)
.||- .+|..+.. ..|..+++.+..... . +++||-+.. -...+++....+..+..+++..+...|.+.|
T Consensus 22 ~PK~--~l~l~g~~-~ll~~tl~~l~~~~~-~---~iviv~~~~-----~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~a 89 (468)
T TIGR01479 22 YPKQ--FLALVGDL-TMLQQTLKRLAGLPC-S---SPLVICNEE-----HRFIVAEQLREIGKLASNIILEPVGRNTAPA 89 (468)
T ss_pred CCCc--eeEcCCCC-cHHHHHHHHHhcCCC-c---CcEEecCHH-----HHHHHHHHHHHcCCCcceEEecccccCchHH
Confidence 4543 45555655 788889988776532 2 666664322 1223333333321122345554555666655
Q ss_pred HHhhhhhc-----CCCEEEEEcCCCccCc-CchHHHHHH
Q psy1766 94 RMFGAKYA-----TGKVLVFLDSHIEVNT-HWLEPLLVP 126 (214)
Q Consensus 94 ~n~g~~~a-----~gd~i~~lD~D~~~~~-~~l~~l~~~ 126 (214)
.-.|.... ..++++++.+|..+.. ..+.++++.
T Consensus 90 i~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~ 128 (468)
T TIGR01479 90 IALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKL 128 (468)
T ss_pred HHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHH
Confidence 54443332 2467899999977643 456666554
No 189
>KOG2733|consensus
Probab=73.08 E-value=59 Score=27.84 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=61.4
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHH
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIR 92 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~ 92 (214)
..+.+|+-|..+|++ .|.+.|+-+-+.+.+++.-++|+|-|.++ +. -+.+++.+ .++.+--...-.=.+.
T Consensus 30 ~~~~~slavAGRn~~--KL~~vL~~~~~k~~~~ls~~~i~i~D~~n--~~---Sl~emak~---~~vivN~vGPyR~hGE 99 (423)
T KOG2733|consen 30 VFEGLSLAVAGRNEK--KLQEVLEKVGEKTGTDLSSSVILIADSAN--EA---SLDEMAKQ---ARVIVNCVGPYRFHGE 99 (423)
T ss_pred cccCceEEEecCCHH--HHHHHHHHHhhccCCCcccceEEEecCCC--HH---HHHHHHhh---hEEEEeccccceecCc
Confidence 456789999999985 89999999888887766678888888876 33 33444433 2333311111111233
Q ss_pred HHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 93 ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 93 a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
+.-.+.-.....++ |..=.|.|++.|....
T Consensus 100 ~VVkacienG~~~v-----DISGEP~f~E~mq~kY 129 (423)
T KOG2733|consen 100 PVVKACIENGTHHV-----DISGEPQFMERMQLKY 129 (423)
T ss_pred HHHHHHHHcCCcee-----ccCCCHHHHHHHHHHH
Confidence 33333333334444 6666899999987765
No 190
>KOG3736|consensus
Probab=72.86 E-value=1.3 Score=39.82 Aligned_cols=24 Identities=58% Similarity=1.228 Sum_probs=21.0
Q ss_pred cchhccccccccccceeccCCCcc
Q psy1766 189 SALVRGGFNWGLHFKWENLPKGTH 212 (214)
Q Consensus 189 ~~~~~ggf~~~~~~~~~~~~~~~~ 212 (214)
.-...|||||.+.|+|+.+|.+..
T Consensus 277 ~~~~rGgFdW~l~f~w~~lP~~~~ 300 (578)
T KOG3736|consen 277 SELMRGGFDWELTFKWERLPLPEE 300 (578)
T ss_pred CccceeeeecceeEEeccCCccHh
Confidence 556899999999999999999654
No 191
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=72.57 E-value=23 Score=29.79 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=55.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC-----CCcEEEEEc-------CCC
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN-----NGRVHLYRT-------SKR 87 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~-----~~~v~~i~~-------~~~ 87 (214)
.+|..+.. ..|...|+++.+... -+|+||-.... +...+.+.+ .+. ...++++.. +..
T Consensus 23 llpv~g~~-pli~~~l~~l~~~gi----~~i~iv~~~~~--~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (361)
T TIGR02091 23 AVPFGGKY-RIIDFPLSNCINSGI----RRIGVLTQYKS--HSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGTDWY 92 (361)
T ss_pred cceeccee-eEeeehhhhhhhcCC----ceEEEEeccCh--HHHHHHHHh---ccCccCccCCCEEEeCCcccCCCCccc
Confidence 56666653 355566666655432 37777766543 333333332 110 013444321 113
Q ss_pred cchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 88 EGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 88 ~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
.|.+.+.-.++.... .+.++++.+|...+.+ +..++....+
T Consensus 93 ~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~ 136 (361)
T TIGR02091 93 QGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIE 136 (361)
T ss_pred cCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHH
Confidence 577778777777653 5788999999876555 6666666543
No 192
>PRK10122 GalU regulator GalF; Provisional
Probab=72.25 E-value=54 Score=26.99 Aligned_cols=107 Identities=13% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHH-------------------HHHh
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVE-------------------TFVK 72 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~-------------------~~~~ 72 (214)
...||- .+|.-+. ..+...|+++.+... -+|+|+-.... +...+.+. .+..
T Consensus 22 ~~~PK~--llpi~gk--piI~~~l~~l~~~Gi----~~i~iv~~~~~--~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~ 91 (297)
T PRK10122 22 KAIPKE--MLPIVDK--PMIQYIVDEIVAAGI----KEIVLVTHASK--NAVENHFDTSYELESLLEQRVKRQLLAEVQS 91 (297)
T ss_pred CCCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEcCCCh--HHHHHHHhcchhHHHHHhhcchhhhHHhhhh
Confidence 344554 5666555 577778888777543 27777744322 12222221 0000
Q ss_pred hc-CCCcEEEEEcCCCcchHHHHHhhhhhcC-CCEEEEEcCCCccCcC-------chHHHHHHHhc
Q psy1766 73 GL-NNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTH-------WLEPLLVPIAE 129 (214)
Q Consensus 73 ~~-~~~~v~~i~~~~~~G~~~a~n~g~~~a~-gd~i~~lD~D~~~~~~-------~l~~l~~~~~~ 129 (214)
.. .+.++.++..++..|.+.|.-.+..... .++++++ +|..+.++ -+..+++...+
T Consensus 92 ~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 92 ICPPGVTIMNVRQGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred ccCCCceEEEeecCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 00 0235677777778899999988888764 4676666 77777543 47778776644
No 193
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=72.18 E-value=46 Score=26.21 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC--CCEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--GKVL 106 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~--gd~i 106 (214)
.-|..+|+.+.+...-+ +|+||-... ..+.++++..+ ..++++... . ........|++... .++|
T Consensus 29 pvl~~tl~~f~~~~~i~---~Ivvv~~~~-----~~~~~~~~~~~---~~v~iv~GG-~-tR~~SV~ngL~~l~~~~d~V 95 (221)
T PF01128_consen 29 PVLEYTLEAFLASPEID---EIVVVVPPE-----DIDYVEELLSK---KKVKIVEGG-A-TRQESVYNGLKALAEDCDIV 95 (221)
T ss_dssp EHHHHHHHHHHTTTTES---EEEEEESGG-----GHHHHHHHHHH---TTEEEEE---S-SHHHHHHHHHHCHHCTSSEE
T ss_pred EeHHHHHHHHhcCCCCC---eEEEEecch-----hHHHHHHhhcC---CCEEEecCC-h-hHHHHHHHHHHHHHcCCCEE
Confidence 68888999987654443 888886543 33445555444 477877633 2 23334444665543 3799
Q ss_pred EEEcCCCc-cCcCchHHHHHHHhcC--CCEEEEeeeeee
Q psy1766 107 VFLDSHIE-VNTHWLEPLLVPIAER--TNTVTVPIIDII 142 (214)
Q Consensus 107 ~~lD~D~~-~~~~~l~~l~~~~~~~--~~~vv~~~~~~~ 142 (214)
++-|+=-. ++++.+.++++.+.++ ..+.+.|..|.+
T Consensus 96 lIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTi 134 (221)
T PF01128_consen 96 LIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTI 134 (221)
T ss_dssp EEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEE
T ss_pred EEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccE
Confidence 99888654 5889999999998763 333445555543
No 194
>KOG2264|consensus
Probab=72.03 E-value=5 Score=35.95 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=71.6
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
.++||+-+|.++ +.|...|+.+-...|-+ .||||=|+.. +...+..-. .- +..|.+++..+|. -.+|-
T Consensus 650 QFTvVmLTYERe-~VLm~sLeRL~gLPYLn---KvvVVWNspk--~P~ddl~WP--di--gvPv~viR~~~Ns--LNNRF 717 (907)
T KOG2264|consen 650 QFTVVMLTYERE-AVLMGSLERLHGLPYLN---KVVVVWNSPK--DPPDDLTWP--DI--GVPVEVIRVAENS--LNNRF 717 (907)
T ss_pred eEEEEEEEehHH-HHHHHHHHHhhCCcccc---eEEEEeCCCC--CChhcccCc--CC--CCceEEEEccccc--ccccc
Confidence 599999999999 99999999987777766 8999988877 333322111 00 3467777766542 12233
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEE
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVT 135 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv 135 (214)
.-......+-|+-+|+|.-+..+-+---.+...++.+-+|
T Consensus 718 lPwd~IETEAvLS~DDDahLrhdEI~fgFRVWRE~RDRiV 757 (907)
T KOG2264|consen 718 LPWDRIETEAVLSLDDDAHLRHDEIIFGFRVWRENRDRIV 757 (907)
T ss_pred cCchhhhheeeeecccchhhhhhheeeeeehhhhcccccc
Confidence 3456667899999999988765544444445555555444
No 195
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=70.36 E-value=60 Score=26.78 Aligned_cols=107 Identities=13% Similarity=0.192 Sum_probs=60.1
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHH---------------Hhh----
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETF---------------VKG---- 73 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~---------------~~~---- 73 (214)
..||. .+|.-++ ..+..+|.++.+... .+|+||-.... +...+.+..- ..+
T Consensus 28 ~~pK~--l~pv~g~--pii~~~l~~l~~~gi----~~i~vv~~~~~--~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i 97 (302)
T PRK13389 28 AIPKE--MLPLVDK--PLIQYVVNECIAAGI----TEIVLVTHSSK--NSIENHFDTSFELEAMLEKRVKRQLLDEVQSI 97 (302)
T ss_pred CCCce--eeEECCE--EHHHHHHHHHHHCCC----CEEEEEeCCCH--HHHHHHHccchhhhhhhhhhhhhHHHHhhhhc
Confidence 44554 5666554 588888888877532 37777665443 2333333210 000
Q ss_pred c-CCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCccC-------cCchHHHHHHHhc
Q psy1766 74 L-NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVN-------THWLEPLLVPIAE 129 (214)
Q Consensus 74 ~-~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~~-------~~~l~~l~~~~~~ 129 (214)
. +...+.+.......|.+.|.-.+......+-++++.+|..+. ...+..+++...+
T Consensus 98 ~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~ 161 (302)
T PRK13389 98 CPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDE 161 (302)
T ss_pred cccCceEEEeecCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHh
Confidence 0 011344455455678888887777665434456667887763 3567788876643
No 196
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=70.03 E-value=33 Score=29.04 Aligned_cols=102 Identities=10% Similarity=0.128 Sum_probs=58.1
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhh---cC----CCcEEEE--
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG---LN----NGRVHLY-- 82 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~---~~----~~~v~~i-- 82 (214)
...||. .+|.-+.. ..|...|+.+.+... -+|+||-..-. + .++++... +. ...+.++
T Consensus 22 ~~~PK~--llpv~gk~-pli~~~l~~l~~~Gi----~~i~iv~~~~~--~----~i~~~~~~~~~~~~~~~~~~~~i~~~ 88 (380)
T PRK05293 22 KNIAKP--AVPFGGKY-RIIDFTLSNCANSGI----DTVGVLTQYQP--L----ELNNHIGIGSPWDLDRINGGVTILPP 88 (380)
T ss_pred cCCccc--eeeeCCce-eehhHHHHHHHhCCC----CEEEEEecCCH--H----HHHHHHhCCCcccccCCCCCEEEeCC
Confidence 355654 67777764 467777777766443 27777654332 2 33333221 10 0123432
Q ss_pred --EcCC---CcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 83 --RTSK---REGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 83 --~~~~---~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
...+ ..|.+.|...+..... .+.++++.+|.....+ +..+++..
T Consensus 89 ~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d-~~~ll~~h 140 (380)
T PRK05293 89 YSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMD-YDKMLDYH 140 (380)
T ss_pred cccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCC-HHHHHHHH
Confidence 2122 2678888887777653 4789999999876655 55666654
No 197
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=69.82 E-value=64 Score=26.85 Aligned_cols=103 Identities=9% Similarity=0.145 Sum_probs=59.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECC-CCCCCChHHHHHHHHhhcCCCcE--EE--EEcCCCc--c
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF-SEYPSNLHGEVETFVKGLNNGRV--HL--YRTSKRE--G 89 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~-s~~~d~t~~~~~~~~~~~~~~~v--~~--i~~~~~~--G 89 (214)
++||.+..+ . +.+...|.|++..+..+ ..+.|+.|. .. +...+.++++...+ ...+ ++ +..+... +
T Consensus 3 ~~vv~~g~~-~-~~~~~~lkSil~~n~~~--l~Fhi~~d~~~~--~~~~~~l~~~~~~~-~~~i~~~i~~I~~P~~~~~~ 75 (304)
T cd06430 3 LAVVACGER-L-EETLTMLKSAIVFSQKP--LRFHIFAEDQLK--QSFKEKLDDWPELI-DRKFNYTLHPITFPSGNAAE 75 (304)
T ss_pred EEEEEcCCc-H-HHHHHHHHHHHHhCCCC--EEEEEEECCccC--HHHHHHHHHHHHhc-cceeeeEEEEEecCccchhh
Confidence 455555555 4 88899999987766444 577776665 44 56777788875442 1222 22 3322211 1
Q ss_pred -------hHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 90 -------LIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 90 -------~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
....|-..-+.- .-|-++.+|+|..+..+ |+++.+.+
T Consensus 76 ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~d-I~eL~~~~ 120 (304)
T cd06430 76 WKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRP-VEEIWSFL 120 (304)
T ss_pred hhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCC-HHHHHHHH
Confidence 111222222222 34789999999988766 67777654
No 198
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=69.36 E-value=47 Score=25.19 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEE
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFL 109 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~l 109 (214)
.+.+.++.+.+ .- .+|+++-+-++ ..|.+.+.+ ..+.+++. ...|.-.-.|.+++..... ++.+
T Consensus 29 LI~~v~~al~~--~~---d~i~v~isp~t--p~t~~~~~~-------~gv~vi~t-pG~GYv~Dl~~al~~l~~P-~lvv 92 (177)
T COG2266 29 LIDRVLEALRK--IV---DEIIVAISPHT--PKTKEYLES-------VGVKVIET-PGEGYVEDLRFALESLGTP-ILVV 92 (177)
T ss_pred HHHHHHHHHHh--hc---CcEEEEeCCCC--HhHHHHHHh-------cCceEEEc-CCCChHHHHHHHHHhcCCc-eEEE
Confidence 44455554433 12 49999999888 677777766 36889984 4778999999999988764 5566
Q ss_pred cCCCc-cCcCchHHHHHHHh
Q psy1766 110 DSHIE-VNTHWLEPLLVPIA 128 (214)
Q Consensus 110 D~D~~-~~~~~l~~l~~~~~ 128 (214)
-+|.. +.|..+..+++.+.
T Consensus 93 saDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 93 SADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred ecccccCCHHHHHHHHHHHh
Confidence 77776 58888999888876
No 199
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=69.05 E-value=60 Score=27.93 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=51.0
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC--Ccch
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK--REGL 90 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~--~~G~ 90 (214)
..||- ++|.-+. ..+...++.+... . . +|+|+-.. . . +.++++..+. ..+++++..+. ..|.
T Consensus 19 ~~pK~--Llpi~gk--Pli~~~i~~l~~~-~-~---~i~Ivv~~-~----~-~~i~~~~~~~-~~~v~~~~~~~~~~~gt 82 (430)
T PRK14359 19 SLPKV--LHTICGK--PMLFYILKEAFAI-S-D---DVHVVLHH-Q----K-ERIKEAVLEY-FPGVIFHTQDLENYPGT 82 (430)
T ss_pred CCCce--eCEECCc--cHHHHHHHHHHHc-C-C---cEEEEECC-C----H-HHHHHHHHhc-CCceEEEEecCccCCCc
Confidence 34543 4566554 5777777777654 2 2 55554432 1 1 2333333322 23677766432 2455
Q ss_pred HHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHH
Q psy1766 91 IRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLL 124 (214)
Q Consensus 91 ~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~ 124 (214)
+.+.... ....++++++++|.. ..++.++.+.
T Consensus 83 ~~al~~~--~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 83 GGALMGI--EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred HHHHhhc--ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 5555432 124688999999984 4666666654
No 200
>PLN02248 cellulose synthase-like protein
Probab=68.35 E-value=10 Score=36.87 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=39.5
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhh----hcCCCEEEEEcCCCccC-cCchHHHHHHHhc
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAK----YATGKVLVFLDSHIEVN-THWLEPLLVPIAE 129 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~----~a~gd~i~~lD~D~~~~-~~~l~~l~~~~~~ 129 (214)
|.+.|+..+++.| +++|+|.-++ .++|+||+.+|.|..+. +..+.+.+-.+..
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 4455555554444 7889998886 45899999999999975 5588888887743
No 201
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=65.54 E-value=50 Score=28.40 Aligned_cols=105 Identities=8% Similarity=-0.008 Sum_probs=59.0
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEc---CC-
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRT---SK- 86 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~---~~- 86 (214)
..||. .+|.-+.. ..|...|.++.+... -+|+|+-.... +...+.+. ..+. ...+.++.. ..
T Consensus 25 ~~PK~--llPv~gk~-plI~~~L~~l~~~Gi----~~i~iv~~~~~--~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~ 92 (407)
T PRK00844 25 DRAKP--AVPFGGSY-RLIDFVLSNLVNSGY----LRIYVLTQYKS--HSLDRHIS---QTWRLSGLLGNYITPVPAQQR 92 (407)
T ss_pred CCccc--ceeeCCcc-eEhHHHHHHHHHCCC----CEEEEEeccCH--HHHHHHHH---hCcCccccCCCeEEECCcccC
Confidence 44443 56777764 567777777766543 27777766443 33333332 2110 011223321 11
Q ss_pred -----CcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 87 -----REGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 87 -----~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
..|.+.|...+..... .++++++.+|..... -+..+++...+.
T Consensus 93 ~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~-dl~~l~~~h~~~ 143 (407)
T PRK00844 93 LGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRM-DPRQMVDFHIES 143 (407)
T ss_pred CCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcC-CHHHHHHHHHhc
Confidence 3677888877776652 368899999986654 466667655443
No 202
>PLN02195 cellulose synthase A
Probab=64.98 E-value=17 Score=34.90 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=45.9
Q ss_pred CCCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 12 STLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
+++|.|.|.|++-+.. .-....|+-|+++-+||..+.-+.|.|||.+ .-|.+.+.+
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~AL~E 307 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAA--MLSFESLVE 307 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCch--HHHHHHHHH
Confidence 4599999999997643 4677889999999999998889999999988 666665543
No 203
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=64.36 E-value=64 Score=24.89 Aligned_cols=101 Identities=12% Similarity=0.014 Sum_probs=55.1
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHh--hcCCCcEEE--EEcCCCc
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK--GLNNGRVHL--YRTSKRE 88 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~--~~~~~~v~~--i~~~~~~ 88 (214)
..|+. .+|.-|. .-+..+|+.+.+... -+|+||-.... +...+.+.+... ......+.+ .......
T Consensus 20 ~~pK~--llpv~g~--pli~~~l~~l~~~gi----~~i~vv~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 89 (216)
T cd02507 20 DIPKA--LLPVANV--PLIDYTLEWLEKAGV----EEVFVVCCEHS--QAIIEHLLKSKWSSLSSKMIVDVITSDLCESA 89 (216)
T ss_pred CCCcc--cceECCE--EHHHHHHHHHHHCCC----CeEEEEeCCcH--HHHHHHHHhcccccccCCceEEEEEccCCCCC
Confidence 34443 4566555 577778887766432 26777665443 223222222110 000122333 3334577
Q ss_pred chHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHH
Q psy1766 89 GLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 89 G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 125 (214)
|.+.+...+.....++ ++++.+|.....+ +..+++
T Consensus 90 Gta~~l~~~~~~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 90 GDALRLRDIRGLIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred ccHHHHHHHhhcCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 8888777777766666 5678999876665 555554
No 204
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=63.94 E-value=22 Score=34.40 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=45.2
Q ss_pred CCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 13 TLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
++|.|.|.|++-+.. .-....|+-|+++-+||..+.-+.|.|||.. .-|.+.+.+
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~AL~E 342 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGAS--MLLFDTLSE 342 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCch--HhHHHHHHH
Confidence 599999999997643 4577889999999999998889999999988 566665543
No 205
>PLN02436 cellulose synthase A
Probab=63.94 E-value=20 Score=34.84 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=45.2
Q ss_pred CCCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHH
Q psy1766 12 STLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVE 68 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~ 68 (214)
.++|.|.|.|+|-+.. .-....|+-|+++-+||..+.-+.|.|||.. .-|.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~AL~ 419 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAA--MLTFEALS 419 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCch--HHHHHHHH
Confidence 4599999999997643 4677889999999999998889999999988 56666554
No 206
>PHA01631 hypothetical protein
Probab=63.86 E-value=11 Score=28.28 Aligned_cols=64 Identities=6% Similarity=0.181 Sum_probs=38.2
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC---CcchHHHHHhhhhh---cCCCEEEEEcCCCccCcC
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK---REGLIRARMFGAKY---ATGKVLVFLDSHIEVNTH 118 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~G~~~a~n~g~~~---a~gd~i~~lD~D~~~~~~ 118 (214)
+..++||+.=. +-|.-.+++. .+++..+..+. +...+..+-..++. ..-|+++|+|+|..+++-
T Consensus 18 ~D~V~VD~~~~--~~~~c~~~~~-----~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 18 FDYVVVDKTFN--DMTECQIPKY-----QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred ccEEEEccccc--cccccccccc-----CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 78999999876 4443333332 23444443221 23344444455443 467899999999998764
No 207
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=63.25 E-value=95 Score=26.45 Aligned_cols=113 Identities=13% Similarity=0.122 Sum_probs=60.3
Q ss_pred ccccCCcCC-CCCC-ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHH------HHHHHHhhc
Q psy1766 3 IICANQTFP-STLP-STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG------EVETFVKGL 74 (214)
Q Consensus 3 ~~~~~~~~~-~~~p-~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~------~~~~~~~~~ 74 (214)
..|....+. .+.| +|-=++...||- +.|+-.|..+.... ...|||+.+.|- .+..+ ..+.+. .+
T Consensus 65 ~~~~~~~~~~R~~pRrV~D~~~f~~El-DlLeiRl~eL~~vV-----D~FVIvEs~~Tf-~G~~KpL~f~~~~~~f~-~~ 136 (356)
T PF04724_consen 65 NLCQLHGWKPRKTPRRVYDCFLFNNEL-DLLEIRLNELYDVV-----DYFVIVESNRTF-TGKPKPLYFAENKERFA-FF 136 (356)
T ss_pred hcccccCCCcCCCCCeEEEEEEeCChH-HHHHHHHHHhhCcc-----eEEEEEEECCCc-CCCCCCccHHHHHHHHH-hh
Confidence 445544333 2223 333344444554 88888888874333 366777755442 12111 112222 22
Q ss_pred CCCcEEEEEcCC--Ccch-------HHHHHhh---h---hhcCCCEEEEEcCCCccCcCchHHHH
Q psy1766 75 NNGRVHLYRTSK--REGL-------IRARMFG---A---KYATGKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 75 ~~~~v~~i~~~~--~~G~-------~~a~n~g---~---~~a~gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
..+|.++..+. ..|. ...||.- + ....+|+|++-|.|.++.++.|..|-
T Consensus 137 -~~KIiy~~l~~~~~~g~~~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr 200 (356)
T PF04724_consen 137 -HDKIIYVTLDDPPEKGRKDPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLR 200 (356)
T ss_pred -hcceEEEEecCcCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHH
Confidence 24666655432 2232 2334422 1 22368999999999999999888773
No 208
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=62.84 E-value=26 Score=27.77 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHhcCCCCCccEEE-EEECCCCCCCChHHHHHHHHhhcCCCcEEE---EEcCCCc-----c---hHHHHH
Q psy1766 28 PATLYRSVQTLLSRTGQSLLHEII-LVNDFSEYPSNLHGEVETFVKGLNNGRVHL---YRTSKRE-----G---LIRARM 95 (214)
Q Consensus 28 ~~~l~~~l~sl~~q~~~~~~~eii-vVdd~s~~~d~t~~~~~~~~~~~~~~~v~~---i~~~~~~-----G---~~~a~n 95 (214)
+..+..++.||++.... +.++ +++++-+ +...+.++++. ..+.. +..+... . ....+-
T Consensus 13 ~~~a~vl~~SL~~~~~~---~~~~vl~~~~is--~~~~~~L~~~~-----~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl 82 (240)
T cd02537 13 LPGALVLGYSLRKVGSS---YDLVVLVTPGVS--EESREALEEVG-----WIVREVEPIDPPDSANLLKRPRFKDTYTKL 82 (240)
T ss_pred HHHHHHHHHHHHhcCCC---CCEEEEECCCCC--HHHHHHHHHcC-----CEEEecCccCCcchhhhccchHHHHHhHHH
Confidence 46677788888776443 3444 4454444 45555555532 12221 1111000 0 011222
Q ss_pred hhhhhcCCCEEEEEcCCCccCcCchHHHHH
Q psy1766 96 FGAKYATGKVLVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 96 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 125 (214)
.+.+....+-++++|+|..+..+ |..+..
T Consensus 83 ~~~~l~~~drvlylD~D~~v~~~-i~~Lf~ 111 (240)
T cd02537 83 RLWNLTEYDKVVFLDADTLVLRN-IDELFD 111 (240)
T ss_pred HhccccccceEEEEeCCeeEccC-HHHHhC
Confidence 33344467899999999998765 444444
No 209
>PLN03153 hypothetical protein; Provisional
Probab=62.73 E-value=18 Score=32.28 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=32.4
Q ss_pred CcchHHHHHh------hhhh--cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 87 REGLIRARMF------GAKY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 87 ~~G~~~a~n~------g~~~--a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
..|.+.+++. .+.. -..+|++|+|+|+.+..+-|..+++.+......-++
T Consensus 187 ~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIG 244 (537)
T PLN03153 187 PTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVG 244 (537)
T ss_pred CCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEec
Confidence 3466677665 2222 356999999999999766566666665544444444
No 210
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=62.16 E-value=20 Score=34.81 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=45.9
Q ss_pred CCCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 12 STLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
.++|.|.|.|+|-+.. .-....|+-|+++-+||..+.-+.|.|||.. .-|.+.+.+
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~AL~E 404 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAA--MLTFEALSE 404 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCch--HHHHHHHHH
Confidence 4589999999997643 4677889999999999998889999999988 566665543
No 211
>KOG0799|consensus
Probab=61.60 E-value=55 Score=28.74 Aligned_cols=103 Identities=11% Similarity=0.100 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC---Ccc--h
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK---REG--L 90 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~---~~G--~ 90 (214)
.+..+..+|... +.+++.|.++.. +...-.|.||-.|+ +.-...++++...+ ++|.+..... -.| .
T Consensus 104 ~~a~~~~v~kd~-~~verll~aiYh----PqN~ycihvD~~s~--~~fk~~~~~L~~cf--~NV~v~~k~~~v~~~G~s~ 174 (439)
T KOG0799|consen 104 PAAFLRVVYKDY-EQVERLLQAIYH----PQNVYCIHVDAKSP--PEFRVAMQQLASCF--PNVIVLPKRESVTYGGHSI 174 (439)
T ss_pred ceEEEEeecccH-HHHHHHHHHHhC----CcCcceEEECCCCC--HHHHHHHHHHHhcC--CceEEeccccceecCCchh
Confidence 477788888887 888888877743 22257788999998 67777888888876 8888875211 112 2
Q ss_pred HHHHHhhhh----hc-CCCEEEEEcCCCcc--CcCchHHHHHHH
Q psy1766 91 IRARMFGAK----YA-TGKVLVFLDSHIEV--NTHWLEPLLVPI 127 (214)
Q Consensus 91 ~~a~n~g~~----~a-~gd~i~~lD~D~~~--~~~~l~~l~~~~ 127 (214)
-.|--.+++ .. ..+|++.+-+.|.+ +..-+.++.+.+
T Consensus 175 l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 175 LAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred hHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 222222322 21 36888888665554 445566666666
No 212
>PLN02400 cellulose synthase
Probab=61.51 E-value=21 Score=34.72 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=45.1
Q ss_pred CCCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHH
Q psy1766 12 STLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVE 68 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~ 68 (214)
.++|.|.|.|+|-+.. .-....|+-|+++-+||..+.-+.|.|||.. .-|.+.+.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~Al~ 410 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSA--MLTFEALS 410 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCch--HHHHHHHH
Confidence 4599999999997643 4577789999999999998889999999988 56665544
No 213
>PLN02189 cellulose synthase
Probab=61.43 E-value=22 Score=34.47 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=45.3
Q ss_pred CCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 13 TLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
++|.|.|.|++-+.. .-....|+-|+++-+||..+.-+.|.|||.. .-|.+.+.+
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS--~LTf~AL~E 386 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGAS--MLTFEALSE 386 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCch--HHHHHHHHH
Confidence 489999999997643 4677889999999999998889999999988 566665543
No 214
>PLN02248 cellulose synthase-like protein
Probab=59.91 E-value=25 Score=34.29 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=46.1
Q ss_pred CCCCceEEEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 12 STLPSTSVIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
.++|.|.|.|++-+.. .-....|+-|+++.+||..+.-+.|.|||.. .-|.+.+.+
T Consensus 364 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS--~LTf~AL~E 422 (1135)
T PLN02248 364 SDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGA--LLTFEAMAE 422 (1135)
T ss_pred ccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCch--HHHHHHHHH
Confidence 3699999999997654 4577889999999999998889999999988 667665543
No 215
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=59.81 E-value=1.1e+02 Score=26.66 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC------CCcEEEEEc-------CC
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN------NGRVHLYRT-------SK 86 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~------~~~v~~i~~-------~~ 86 (214)
.+|.-+.. ..|...|.++.+... -+|+|+-.... +...+.+.+ .+. ...+.++.. +.
T Consensus 40 llpv~gkp-~lI~~~l~~l~~~Gi----~~i~vv~~~~~--~~i~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~e~~ 109 (425)
T PRK00725 40 AVYFGGKF-RIIDFALSNCINSGI----RRIGVLTQYKA--HSLIRHIQR---GWSFFREELGEFVDLLPAQQRVDEENW 109 (425)
T ss_pred eEEECCEE-EEhHHHHHHHHHCCC----CeEEEEecCCH--HHHHHHHHh---hhcccccCCCCeEEEeCCcccCCCCcc
Confidence 55655553 466667777765433 27777766443 333333322 110 011222111 11
Q ss_pred CcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 87 REGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 87 ~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
..|.+.|.-.++.... .+.++++.+|..... -+..+++...+.
T Consensus 110 ~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~-dl~~ll~~h~~~ 155 (425)
T PRK00725 110 YRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKM-DYSRMLADHVES 155 (425)
T ss_pred ccCcHHHHHHHHHHHHhcCCCEEEEecCCeEecc-CHHHHHHHHHHc
Confidence 3687888777776653 478999999986654 477777765443
No 216
>PLN02436 cellulose synthase A
Probab=59.58 E-value=15 Score=35.55 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=43.1
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhhc----CCCEEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIA 128 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~a----~gd~i~~lD~D~~~-~~~~l~~l~~~~~ 128 (214)
|.+.|+..+++.| +++|+|+.++.+ ++.||+-+|.|... .+..+.+.+-.+.
T Consensus 532 P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfll 593 (1094)
T PLN02436 532 PRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMM 593 (1094)
T ss_pred ceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhc
Confidence 7888888877766 789999988754 89999999999976 6788888877764
No 217
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=59.25 E-value=89 Score=24.83 Aligned_cols=92 Identities=10% Similarity=0.178 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEE
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 108 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~ 108 (214)
..+..+|+.+......+ +|||.- |. ......++.++.++ ++.+++.+ .-..-.-.-.+++.-.++.|+-
T Consensus 29 pmI~~~lervrks~~~d---~ivvAT--S~--~~~d~~l~~~~~~~---G~~vfrGs-~~dVL~Rf~~a~~a~~~~~VVR 97 (241)
T COG1861 29 PMIEYQLERVRKSKDLD---KIVVAT--SD--KEEDDALEEVCRSH---GFYVFRGS-EEDVLQRFIIAIKAYSADVVVR 97 (241)
T ss_pred chHHHHHHHHhcccccc---ceEEEe--cC--CcchhHHHHHHHHc---CeeEecCC-HHHHHHHHHHHHHhcCCCeEEE
Confidence 57788888887766654 666542 22 35566777777764 78787733 2233334445667778899999
Q ss_pred EcCCCcc-CcCchHHHHHHH-hcCC
Q psy1766 109 LDSHIEV-NTHWLEPLLVPI-AERT 131 (214)
Q Consensus 109 lD~D~~~-~~~~l~~l~~~~-~~~~ 131 (214)
+-+|+.+ +|+.+...+... +++.
T Consensus 98 vTGD~P~~dp~l~d~~v~~~l~~ga 122 (241)
T COG1861 98 VTGDNPFLDPELVDAAVDRHLEKGA 122 (241)
T ss_pred eeCCCCCCCHHHHHHHHHHHHhcCC
Confidence 9999985 889888887765 4443
No 218
>PLN02190 cellulose synthase-like protein
Probab=58.35 E-value=19 Score=33.67 Aligned_cols=52 Identities=10% Similarity=0.086 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhh----cCCCEEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKY----ATGKVLVFLDSHIEV-NTHWLEPLLVPIA 128 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~ 128 (214)
|.+.|+..+++.| +++|+|.-++. +++++|+-+|.|... .+..+.+.+-.+.
T Consensus 252 P~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~l 313 (756)
T PLN02190 252 PHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFL 313 (756)
T ss_pred ceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhc
Confidence 7888888777766 78899988865 489999999999987 6888888777764
No 219
>KOG4179|consensus
Probab=58.33 E-value=12 Score=32.38 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=67.3
Q ss_pred CceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCC--CcEEEEEcCCC-----
Q psy1766 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNN--GRVHLYRTSKR----- 87 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~--~~v~~i~~~~~----- 87 (214)
|.+-+.+-++|-. ..+.-.+..+-+++++....-|-+--|.+. |.+.+.+.++.+...+ .+|++-...+.
T Consensus 3 ptvl~alL~rn~a-h~lp~Flg~le~~Dypk~r~aiw~~~dh~~--d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d 79 (568)
T KOG4179|consen 3 PTVLCALLFRNFA-HSLPLFLGELEEGDYPKIRPAIWIGVDHEH--DHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPD 79 (568)
T ss_pred ceeehHHHHHHHH-hhhhhccCChhccCCcccccceEEecCccc--cchHHHHHHHHHhcCCccceeEEEecCCccccCc
Confidence 3444445556666 666666666677888876566667667777 8899999998886532 24444221111
Q ss_pred -cc-----------hHHHHHhhhhhcC---CCEEEEEcCCCcc-CcCchHHHHHH
Q psy1766 88 -EG-----------LIRARMFGAKYAT---GKVLVFLDSHIEV-NTHWLEPLLVP 126 (214)
Q Consensus 88 -~G-----------~~~a~n~g~~~a~---gd~i~~lD~D~~~-~~~~l~~l~~~ 126 (214)
.| .-.-...++..++ .||++|.|.|+.+ .++.|.-+++.
T Consensus 80 ~~~pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 80 EHGPKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred ccCCccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 11 1112233444443 5999999999997 56777766654
No 220
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=58.32 E-value=80 Score=24.02 Aligned_cols=78 Identities=8% Similarity=-0.015 Sum_probs=49.5
Q ss_pred CC-CchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc--CCCcchHHHHHhhhhhc
Q psy1766 25 NE-HPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT--SKREGLIRARMFGAKYA 101 (214)
Q Consensus 25 n~-~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~--~~~~G~~~a~n~g~~~a 101 (214)
+. . ..+..+++.+..+ . .+|+||-+. . . . . ..+.++.. ....|.-.+...++...
T Consensus 32 ~g~~-~ll~~~i~~l~~~--~---~~vvvv~~~-~--~-~-----~-------~~~~~v~d~~~~~~gpl~gi~~~l~~~ 89 (196)
T PRK00560 32 GSYS-SLLEYQYTRLLKL--F---KKVYISTKD-K--K-F-----E-------FNAPFLLEKESDLFSPLFGIINAFLTL 89 (196)
T ss_pred CCCC-cHHHHHHHHHHHh--C---CEEEEEECc-h--h-c-----c-------cCCcEEecCCCCCCCcHHHHHHHHHhc
Confidence 44 5 6777777777644 2 267776543 2 1 0 0 12233332 23456666777777777
Q ss_pred CCCEEEEEcCCCcc-CcCchHHHH
Q psy1766 102 TGKVLVFLDSHIEV-NTHWLEPLL 124 (214)
Q Consensus 102 ~gd~i~~lD~D~~~-~~~~l~~l~ 124 (214)
+.++++++=+|..+ +++.++.+.
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 90 QTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred CCCeEEEEecCcCcCCHHHHHHHH
Confidence 88999999999975 888888884
No 221
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=56.08 E-value=86 Score=23.66 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCc-EEEEEcCCCcchHHHHHhhhhhc--CC-C
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR-VHLYRTSKREGLIRARMFGAKYA--TG-K 104 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~-v~~i~~~~~~G~~~a~n~g~~~a--~g-d 104 (214)
++.....+.+..+.. + +|++=..||.. ....+....+........ -+.+ .....|-....-..++.+ ++ +
T Consensus 14 ~Rr~~~~~~~~~~~~-~--~e~~~Avdg~~--l~~~~~~~~~~~~~~~~~~~~~l-t~gEiGC~lSH~~~w~~~v~~~~~ 87 (200)
T PF01755_consen 14 ERRERIQQQLAKLGI-N--FEFFDAVDGRD--LSEDELFRRYDPELFKKRYGRPL-TPGEIGCALSHIKAWQRIVDSGLE 87 (200)
T ss_pred HHHHHHHHHHHHcCC-c--eEEEEeecccc--cchHHHHHHhhhhhhhccccccC-CcceEeehhhHHHHHHHHHHcCCC
Confidence 454444444443322 3 79998888887 333223333222110011 1111 234555444444444443 34 8
Q ss_pred EEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 105 VLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 105 ~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
+++++.+|..+.+++.+.+......
T Consensus 88 ~~lIlEDDv~~~~~f~~~l~~~~~~ 112 (200)
T PF01755_consen 88 YALILEDDVIFDPDFKEFLEEILSH 112 (200)
T ss_pred eEEEEeccccccccHHHHHHHHHhh
Confidence 9999999999999976666555443
No 222
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=56.07 E-value=36 Score=28.57 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=38.2
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR 83 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~ 83 (214)
..++.++|+-++|+++..+.++|+++-..--....|-.|+++|..-+ ++-.+.+.+... ..+++..
T Consensus 53 ~r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFt-eeFk~~i~~~~~----~~v~F~~ 118 (328)
T PF01793_consen 53 PRENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFT-EEFKEAISNATS----GKVEFGL 118 (328)
T ss_dssp S---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS----HHHHHHHHHH-S----S-EEEEE
T ss_pred CCCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCC-HHHHHHHHHhhc----CceEEEE
Confidence 44679999999999989999999998766555555899999998763 344445554432 4555543
No 223
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=55.26 E-value=66 Score=28.75 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=50.4
Q ss_pred EEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc-hHHHHHhhhhhc------CCCEEEEEcCCCccCcCchHH
Q psy1766 50 IILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG-LIRARMFGAKYA------TGKVLVFLDSHIEVNTHWLEP 122 (214)
Q Consensus 50 iivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G-~~~a~n~g~~~a------~gd~i~~lD~D~~~~~~~l~~ 122 (214)
||||-||.-. ++..+.+++++... +.+ +|.| -.+|+..|+... +.|-|+++++-+.-+-.-++.
T Consensus 1 iv~VsN~~l~-~~~~~~L~~~~~~v------i~R--~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~ 71 (498)
T PF05045_consen 1 IVFVSNSPLS-EEDREKLKDLCDKV------IQR--ENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSE 71 (498)
T ss_pred CEEEECCCCC-HHHHHHHHHHHHHh------EEe--ccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHH
Confidence 5677777653 55666666655432 333 4666 356777777653 568899998877766566899
Q ss_pred HHHHHhcCCCEEE
Q psy1766 123 LLVPIAERTNTVT 135 (214)
Q Consensus 123 l~~~~~~~~~~vv 135 (214)
+.+.+++....+.
T Consensus 72 ~f~~~~~~~~Dfw 84 (498)
T PF05045_consen 72 MFERMEARDVDFW 84 (498)
T ss_pred HHHHhccCCCeEE
Confidence 9998876544433
No 224
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=53.46 E-value=56 Score=20.70 Aligned_cols=52 Identities=12% Similarity=0.275 Sum_probs=38.5
Q ss_pred eCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCC
Q psy1766 24 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSK 86 (214)
Q Consensus 24 ~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~ 86 (214)
|+.. +.+...|..+.++.. .+++|--|+. .+...++++++.+. .+.++..+.
T Consensus 14 ~~D~-~~i~~~Ld~~~~~~~-----~~~lvhGga~--~GaD~iA~~wA~~~---gv~~~~~~a 65 (71)
T PF10686_consen 14 WTDH-ELIWAALDKVHARHP-----DMVLVHGGAP--KGADRIAARWARER---GVPVIRFPA 65 (71)
T ss_pred cccH-HHHHHHHHHHHHhCC-----CEEEEECCCC--CCHHHHHHHHHHHC---CCeeEEeCc
Confidence 4444 788899998887763 5678888886 58888999998875 666665543
No 225
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=52.91 E-value=1e+02 Score=23.65 Aligned_cols=106 Identities=12% Similarity=0.053 Sum_probs=57.0
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC---CCcEEEEEcCCCc
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN---NGRVHLYRTSKRE 88 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~---~~~v~~i~~~~~~ 88 (214)
...|+- .+|.-|. .-+...|+++.+... .+|+|+-+... +...+.+.+...... ...+.++..++..
T Consensus 19 ~~~pK~--llpi~g~--piI~~~l~~l~~~Gi----~~I~iv~~~~~--~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (217)
T cd04197 19 KEKPRC--LLPLANV--PLIDYTLEFLALNGV----EEVFVFCCSHS--DQIKEYIEKSKWSKPKSSLMIVIIIMSEDCR 88 (217)
T ss_pred cCCCce--eeEECCE--ehHHHHHHHHHHCCC----CeEEEEeCCCH--HHHHHHHhhccccccccCcceEEEEeCCCcC
Confidence 344553 5677665 477788888877543 27777766433 333333333211000 0235666655555
Q ss_pred chHHHHHhh--hhhcCCCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 89 GLIRARMFG--AKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 89 G~~~a~n~g--~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
|.+.|.... ......+ ++++.+|.....+ +..+++...+
T Consensus 89 ~~~~al~~~~~~~~~~~~-flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 89 SLGDALRDLDAKGLIRGD-FILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred ccchHHHHHhhccccCCC-EEEEeCCeeeccC-HHHHHHHHHH
Confidence 655554322 1122344 6688999877554 6677776644
No 226
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=51.37 E-value=20 Score=33.38 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhhc----CCCEEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIA 128 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~a----~gd~i~~lD~D~~~-~~~~l~~l~~~~~ 128 (214)
|.+.|+..+++.| +++|+|..++.+ +++||+-+|.|... .+..+.+.+-.+.
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~ 227 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFM 227 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhc
Confidence 6788888777766 678888877543 79999999999976 6788888777763
No 227
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=50.69 E-value=68 Score=21.62 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=43.5
Q ss_pred CCCceEEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcch
Q psy1766 13 TLPSTSVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGL 90 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~ 90 (214)
...+..+..+..+.. ...+..+|..++....... .++|+.|+|+. -+...++++++.+ ++++.........
T Consensus 33 ~~S~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-p~~i~tD~g~~---f~~~~~~~~~~~~---~i~~~~~~~~~p~ 104 (120)
T PF00665_consen 33 DYSRFIYAFPVSSKETAEAALRALKRAIEKRGGRP-PRVIRTDNGSE---FTSHAFEAWCKHL---GIKHVFTPPYTPQ 104 (120)
T ss_dssp TTTTEEEEEEESSSSHHHHHHHHHHHHHHHHS-SE--SEEEEESCHH---HHSHHHHHHHHHH---T-EEEESSTSSTH
T ss_pred CCCCcEEEEEeeccccccccccccccccccccccc-ceecccccccc---cccchhhhHHHHc---CceEeeCCCCChh
Confidence 344566666776663 4567777776555444410 28999999985 4555777777776 6777665554443
No 228
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=48.86 E-value=1.3e+02 Score=24.50 Aligned_cols=107 Identities=9% Similarity=0.018 Sum_probs=57.6
Q ss_pred CCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 10 FPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 10 ~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
|..+.++|.+.+-+=+.-..+++.-++|.-+--.+.......|--|... .... + ++.. ...++++...+..|
T Consensus 29 y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~---~~p~-v-~lg~---~r~~~V~~v~~~~~ 100 (271)
T cd02515 29 YRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPA---AVPE-V-ELGP---GRRLTVLKIAEESR 100 (271)
T ss_pred HHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCcc---cCcc-c-ccCC---CceeEEEEeccccC
Confidence 3445567777777766665688888888766555553234444444332 1111 0 1100 13456655433222
Q ss_pred ---hHHHHHhhh-------hhcCCCEEEEEcCCCccCcCchHHHH
Q psy1766 90 ---LIRARMFGA-------KYATGKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 90 ---~~~a~n~g~-------~~a~gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
.+--|-..+ .....||+.|+|+|..+...+=.+.+
T Consensus 101 W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~L 145 (271)
T cd02515 101 WQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVETL 145 (271)
T ss_pred CcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHHh
Confidence 222222222 22367999999999998776654444
No 229
>PLN02400 cellulose synthase
Probab=48.70 E-value=26 Score=34.16 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=42.7
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhh----cCCCEEEEEcCCCcc-CcCchHHHHHHHh
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKY----ATGKVLVFLDSHIEV-NTHWLEPLLVPIA 128 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~~-~~~~l~~l~~~~~ 128 (214)
|.+.|+..+++.| +++|+|+-++. +++.||+-+|.|... .+..+.+.+-.+.
T Consensus 523 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~l 584 (1085)
T PLN02400 523 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM 584 (1085)
T ss_pred ceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhhee
Confidence 6788888777766 78899998874 489999999999998 6788888777763
No 230
>KOG0780|consensus
Probab=48.50 E-value=1.5e+02 Score=25.87 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEeCCC--chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcc-hHHHHH
Q psy1766 21 ICFYNEH--PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREG-LIRARM 95 (214)
Q Consensus 21 Ip~~n~~--~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G-~~~a~n 95 (214)
||.|.+. .+...-+.+.+..-.-.+ ++|||||-+... ..-.+..+++.+-.. .|.-.++..+...| .+.+.-
T Consensus 157 iP~ygsyte~dpv~ia~egv~~fKke~--fdvIIvDTSGRh-~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 157 VPFYGSYTEADPVKIASEGVDRFKKEN--FDVIIVDTSGRH-KQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred CeeEecccccchHHHHHHHHHHHHhcC--CcEEEEeCCCch-hhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Q ss_pred hhhhhc---CCCEEEEEcCCC
Q psy1766 96 FGAKYA---TGKVLVFLDSHI 113 (214)
Q Consensus 96 ~g~~~a---~gd~i~~lD~D~ 113 (214)
.+++.. .+=+|.-||++.
T Consensus 234 ~aFk~~vdvg~vIlTKlDGha 254 (483)
T KOG0780|consen 234 RAFKETVDVGAVILTKLDGHA 254 (483)
T ss_pred HHHHHhhccceEEEEecccCC
No 231
>PF15224 SCRG1: Scrapie-responsive protein 1
Probab=48.17 E-value=13 Score=23.19 Aligned_cols=11 Identities=36% Similarity=0.455 Sum_probs=9.8
Q ss_pred CceEEEEEEeC
Q psy1766 15 PSTSVIICFYN 25 (214)
Q Consensus 15 p~vSVIIp~~n 25 (214)
|+||.|||+-|
T Consensus 67 PkiSFVIPCN~ 77 (78)
T PF15224_consen 67 PKISFVIPCNN 77 (78)
T ss_pred CceeEEEeCCC
Confidence 89999999865
No 232
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=46.89 E-value=1.4e+02 Score=25.93 Aligned_cols=99 Identities=9% Similarity=0.057 Sum_probs=52.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc--------CCCcEEEEEc--C----
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--------NNGRVHLYRT--S---- 85 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~--------~~~~v~~i~~--~---- 85 (214)
.+|.-+.. ..+...|+++.+... . +|+|+-.... +...+.+. ..+ ....+.+... .
T Consensus 28 llpv~g~~-plId~~L~~l~~~Gi-~---~i~iv~~~~~--~~i~~~l~---~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (436)
T PLN02241 28 AVPIGGNY-RLIDIPMSNCINSGI-N---KIYVLTQFNS--ASLNRHLS---RAYNFGNGGNFGDGFVEVLAATQTPGEK 97 (436)
T ss_pred ceEeCCcc-eEehHHHHHHHhCCC-C---EEEEEeccCH--HHHHHHHh---ccCCCCCCcccCCCCEEEcCCcccCCCC
Confidence 56766654 456667777765433 2 7777665433 23333332 211 0112333221 1
Q ss_pred -CCcchHHHHHhhhhhcC------CCEEEEEcCCCccCcCchHHHHHHHhc
Q psy1766 86 -KREGLIRARMFGAKYAT------GKVLVFLDSHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 86 -~~~G~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~ 129 (214)
...|.+.|...++.... .+.++++.+|.....+ +..+++...+
T Consensus 98 ~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~d-l~~ll~~h~~ 147 (436)
T PLN02241 98 GWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMD-YMDFVQKHRE 147 (436)
T ss_pred ccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccC-HHHHHHHHHH
Confidence 23566777655544332 4778899999976555 6666665544
No 233
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=46.75 E-value=31 Score=33.49 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCcc-----hHHHHHhhhhhc----CCCEEEEEcCCCcc-CcCchHHHHHHH
Q psy1766 77 GRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPI 127 (214)
Q Consensus 77 ~~v~~i~~~~~~G-----~~~a~n~g~~~a----~gd~i~~lD~D~~~-~~~~l~~l~~~~ 127 (214)
|.+.|+..+++.| +++|+|+-++.+ ++.||+-+|.|... .+..+.+.+-.+
T Consensus 454 P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~ 514 (1044)
T PLN02915 454 PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFL 514 (1044)
T ss_pred ceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceee
Confidence 7888888877766 788999888765 89999999999997 577777766665
No 234
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=44.13 E-value=22 Score=29.23 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=34.5
Q ss_pred cCCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEeeeee
Q psy1766 101 ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI 141 (214)
Q Consensus 101 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~~~~~ 141 (214)
+..|||++.|.|..++...+.++++.+++..-.+.-|.++.
T Consensus 115 ~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~ 155 (294)
T PF05212_consen 115 APYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDP 155 (294)
T ss_pred ccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCC
Confidence 57899999999999999999999999887766666666663
No 235
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=43.95 E-value=1.4e+02 Score=25.99 Aligned_cols=105 Identities=10% Similarity=0.044 Sum_probs=58.7
Q ss_pred CCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC----CCc-EEEEEcCC-
Q psy1766 13 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN----NGR-VHLYRTSK- 86 (214)
Q Consensus 13 ~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~----~~~-v~~i~~~~- 86 (214)
..||. .+|.-+.. ..|...|..+.+... -+|+|+-.... +...+.+.+ .+. ... +.++....
T Consensus 23 ~~PK~--Llpi~gk~-plI~~~L~~l~~~Gi----~~vivv~~~~~--~~i~~~l~~---~~~~~~~~~g~~~i~~~~~~ 90 (429)
T PRK02862 23 LRAKP--AVPLAGKY-RLIDIPISNCINSGI----NKIYVLTQFNS--ASLNRHISQ---TYNFDGFSGGFVEVLAAQQT 90 (429)
T ss_pred CCcce--eeEECCee-EEeHHHHHHHHHCCC----CEEEEEecCCH--HHHHHHHhc---CcCccccCCCEEEEeCCccc
Confidence 44554 67777774 466667777665433 27777665433 233333322 110 011 22221111
Q ss_pred ------CcchHHHHHhhhhhcC---CCEEEEEcCCCccCcCchHHHHHHHhcC
Q psy1766 87 ------REGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAER 130 (214)
Q Consensus 87 ------~~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~ 130 (214)
..|.+.|...+..... .+.++++.+|.... .-+..+++...+.
T Consensus 91 ~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~ 142 (429)
T PRK02862 91 PENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRET 142 (429)
T ss_pred CCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHc
Confidence 1588888887777653 36789999998664 4577777766443
No 236
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=41.55 E-value=2.1e+02 Score=24.02 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=72.0
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-----------
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS----------- 85 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~----------- 85 (214)
+.|+..+=+.-+..+..+|.|++..... ..+.+-+++||=+ ++-.+.+++....+ ...+.....+
T Consensus 3 ~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~--~e~~~~l~~~~~~f-~~~i~~~~id~~~~~~~~~~~ 78 (325)
T COG1442 3 IPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLN--EEDKKKLNETAEPF-KSFIVLEVIDIEPFLDYPPFT 78 (325)
T ss_pred ccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCC--HHHHHHHHHHHHhh-ccceeeEEEechhhhcccccc
Confidence 3445444333347888999999987765 1278888888877 67788888888776 4444443321
Q ss_pred CCcc-hHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEEe
Q psy1766 86 KREG-LIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137 (214)
Q Consensus 86 ~~~G-~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~~ 137 (214)
.+.+ ..-+|-...+.- ..+=++.+|+|..+..+ |+.+.....++...+++.
T Consensus 79 ~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~-l~~lf~~~~~~~~~aaV~ 131 (325)
T COG1442 79 KRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGD-LSELFFIDLEEYYLAAVR 131 (325)
T ss_pred cchHHHHHHHHHHHHhccccCeEEEEecCEEEcCc-HHHHHhcCCCcceEEEEe
Confidence 2222 233444444444 34899999999988776 555555444455555553
No 237
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=41.30 E-value=1.5e+02 Score=26.29 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=53.3
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhh
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGA 98 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~ 98 (214)
+||.+-... +.+...+..++....+. =||||-|+..+..+.+..+.+.+ .+++++..+-..|...|++
T Consensus 57 ~Ii~mv~~g-~~v~~Vi~~l~~~l~~G----diiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~--- 124 (459)
T PRK09287 57 KILLMVKAG-APVDAVIEQLLPLLEKG----DIIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALH--- 124 (459)
T ss_pred EEEEECCCc-hHHHHHHHHHHhcCCCC----CEEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhc---
Confidence 455554455 56666667766554333 26677775543456666655544 4788999877777766654
Q ss_pred hhcCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766 99 KYATGKVLVFLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 99 ~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 128 (214)
|. .++.-+|... -+.++.+++.+.
T Consensus 125 ----G~-siM~GG~~~a-~~~~~piL~~ia 148 (459)
T PRK09287 125 ----GP-SIMPGGQKEA-YELVAPILEKIA 148 (459)
T ss_pred ----CC-EEEEeCCHHH-HHHHHHHHHHHh
Confidence 55 5556555321 233555555553
No 238
>PLN00176 galactinol synthase
Probab=41.10 E-value=81 Score=26.61 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=19.9
Q ss_pred hhhhcCCCEEEEEcCCCccCcCchHHHHH
Q psy1766 97 GAKYATGKVLVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~ 125 (214)
..+....+-+++||+|..+..+ |.+|..
T Consensus 107 iw~l~~ydkvlyLDaD~lv~~n-id~Lf~ 134 (333)
T PLN00176 107 IWEFVEYSKMIYLDGDIQVFEN-IDHLFD 134 (333)
T ss_pred hccccccceEEEecCCEEeecC-hHHHhc
Confidence 3445577889999999998666 444443
No 239
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=40.93 E-value=97 Score=20.10 Aligned_cols=7 Identities=14% Similarity=0.477 Sum_probs=2.8
Q ss_pred CCEEEEE
Q psy1766 103 GKVLVFL 109 (214)
Q Consensus 103 gd~i~~l 109 (214)
.+.+++.
T Consensus 72 ~d~vi~~ 78 (91)
T PF02875_consen 72 ADVVILT 78 (91)
T ss_dssp SSEEEEE
T ss_pred CCEEEEc
Confidence 3444443
No 240
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=40.54 E-value=71 Score=26.93 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=51.6
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCc------EEEEEcCCC-c--
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGR------VHLYRTSKR-E-- 88 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~------v~~i~~~~~-~-- 88 (214)
.+|.-|.. ..|...|+.+.++.. -+|+|+-..-. + +.++++..... +.+ +.++..+.. .
T Consensus 27 LlpV~gk~-PlIe~~l~~L~~~Gi----~~I~iv~~~~~--~---~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~t 96 (369)
T TIGR02092 27 SLPFGGRY-RLIDFPLSNMVNAGI----RNVFIFFKNKE--R---QSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSE 96 (369)
T ss_pred ccccCCee-eEEEEEhhhhhccCC----CEEEEEeCCCc--H---HHHHHHHhCCCCCCcccccCcEEEEeccCCCCccc
Confidence 56666763 355556666665543 27777766533 2 13333332110 111 122222322 2
Q ss_pred chHHHHHhhhhhc---CCCEEEEEcCCCccCcCchHHHHHHHh-cCCCE
Q psy1766 89 GLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPIA-ERTNT 133 (214)
Q Consensus 89 G~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~ 133 (214)
|-+.+...+.+.. ..+.++++.+|.....+ +..+++... ++...
T Consensus 97 g~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~d-l~~ll~~h~~~~a~~ 144 (369)
T TIGR02092 97 GGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNID-LKAVLKYHEETGKDI 144 (369)
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEECCCEEEecC-HHHHHHHHHHcCCCE
Confidence 3344444455443 24788999999866655 666666553 34433
No 241
>KOG3765|consensus
Probab=40.40 E-value=40 Score=29.07 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=41.4
Q ss_pred chHHHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHHh-----cCCCEEEEeeeeeecC
Q psy1766 89 GLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA-----ERTNTVTVPIIDIINA 144 (214)
Q Consensus 89 G~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~-----~~~~~vv~~~~~~~~~ 144 (214)
-....||.|.+.|+++|++..|.|..+..++.+.+...+. ....+.++|..+....
T Consensus 178 P~Nl~RNvAr~ga~t~~~l~sD~dm~~S~gl~~~~~~~~~ql~~~~~~~vlvi~~FE~~~~ 238 (386)
T KOG3765|consen 178 PFNLMRNVARKGANTDYMLMSDIDMVPSYGLADMLKKILNQLDDGKKKKVLVIPAFETDLP 238 (386)
T ss_pred chHHHHHHHHhhcCCCcEEEEeeeeeeccchHHHHHHHHHHhhcccccEEEEeeehhcccc
Confidence 3677899999999999999999999998887666544332 2334666777665543
No 242
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=40.18 E-value=83 Score=23.88 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=8.1
Q ss_pred CCCEEEEEcCCC
Q psy1766 102 TGKVLVFLDSHI 113 (214)
Q Consensus 102 ~gd~i~~lD~D~ 113 (214)
+-.+++|+|+|.
T Consensus 47 ~rgVIIfTDpD~ 58 (174)
T TIGR00334 47 KQGVIILTDPDF 58 (174)
T ss_pred cCCEEEEeCCCC
Confidence 456777777773
No 243
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=38.64 E-value=55 Score=25.83 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH
Q psy1766 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA 93 (214)
Q Consensus 18 SVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a 93 (214)
.|||+.+|++ .|. ...++.+ . .--.|+|=++. +...+.++.+.++| |.+.++-+ |-|.-+.
T Consensus 31 ~VIi~gR~e~--~L~----e~~~~~p-~--~~t~v~Dv~d~--~~~~~lvewLkk~~--P~lNvliN--NAGIqr~ 91 (245)
T COG3967 31 TVIICGRNEE--RLA----EAKAENP-E--IHTEVCDVADR--DSRRELVEWLKKEY--PNLNVLIN--NAGIQRN 91 (245)
T ss_pred EEEEecCcHH--HHH----HHHhcCc-c--hheeeecccch--hhHHHHHHHHHhhC--Cchheeee--cccccch
Confidence 5788888875 444 4444333 2 35566777776 77888899988888 77777664 4454433
No 244
>KOG1467|consensus
Probab=38.01 E-value=3e+02 Score=24.67 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=57.2
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
+|.+|... ..+...|....++. +. +.|+|||..+. -+-...++.+..+ +.++.|+... +.+..+ .
T Consensus 362 viltyg~s-~vV~~ill~A~~~~-k~--frVvVVDSRP~--~EG~~~lr~Lv~~--GinctYv~I~---a~syim----~ 426 (556)
T KOG1467|consen 362 VLLTYGSS-SVVNMILLEAKELG-KK--FRVVVVDSRPN--LEGRKLLRRLVDR--GINCTYVLIN---AASYIM----L 426 (556)
T ss_pred EEEEecch-HHHHHHHHHHHHhC-cc--eEEEEEeCCCC--cchHHHHHHHHHc--CCCeEEEEeh---hHHHHH----H
Confidence 67788888 67776666644433 34 79999999988 6788888988877 4788888754 222222 1
Q ss_pred hcCCCEEEEEcCCCccCcCchH
Q psy1766 100 YATGKVLVFLDSHIEVNTHWLE 121 (214)
Q Consensus 100 ~a~gd~i~~lD~D~~~~~~~l~ 121 (214)
. --.+||-+..++..+++.
T Consensus 427 e---vtkvfLGahailsNG~vy 445 (556)
T KOG1467|consen 427 E---VTKVFLGAHAILSNGAVY 445 (556)
T ss_pred h---cceeeechhhhhcCcchh
Confidence 1 124677888887777764
No 245
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=37.74 E-value=2.7e+02 Score=24.77 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=57.4
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
.+|..+.. ..|..+++.+...... +.+||-+ +.-...+++.....+.....++--+...+.+.|.-.|..
T Consensus 31 ~l~l~~~~-sllq~t~~r~~~~~~~----~~iivt~-----~~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~ 100 (478)
T PRK15460 31 FLCLKGDL-TMLQTTICRLNGVECE----SPVVICN-----EQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAAL 100 (478)
T ss_pred eeECCCCC-CHHHHHHHHHHhCCCC----CcEEEeC-----HHHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHH
Confidence 46666666 7888899887654332 4455532 233444444444431112244443455555655555444
Q ss_pred hc--C----CCEEEEEcCCCccCc-C-chHHHHHHH--hcCCCEEEEe
Q psy1766 100 YA--T----GKVLVFLDSHIEVNT-H-WLEPLLVPI--AERTNTVTVP 137 (214)
Q Consensus 100 ~a--~----gd~i~~lD~D~~~~~-~-~l~~l~~~~--~~~~~~vv~~ 137 (214)
++ + ...++++-+|-.+.+ + |...+.+.+ .+....|..+
T Consensus 101 ~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~G 148 (478)
T PRK15460 101 AAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFG 148 (478)
T ss_pred HHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 33 1 258889999988754 2 444444433 2234455543
No 246
>PF11181 YflT: Heat induced stress protein YflT
Probab=36.55 E-value=75 Score=21.52 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=27.5
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEEC
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVND 55 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd 55 (214)
+|-+|+.. ..+...|+.|..+.|.. .+|.|+-.
T Consensus 2 ~Igv~~~~-~E~~~~I~~L~~~Gy~~--ddI~Vva~ 34 (103)
T PF11181_consen 2 VIGVYDNE-EEALSAIEELKAQGYSE--DDIYVVAK 34 (103)
T ss_pred EEEEECCH-HHHHHHHHHHHHcCCCc--ccEEEEEc
Confidence 46677777 89999999999999988 48888864
No 247
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=36.44 E-value=2.2e+02 Score=26.58 Aligned_cols=86 Identities=15% Similarity=0.248 Sum_probs=46.9
Q ss_pred HHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcC--CCcEEEEEcCCCcchHHHHHhhhhhc--CCCEEEEEc
Q psy1766 35 VQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLD 110 (214)
Q Consensus 35 l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~--~~~v~~i~~~~~~G~~~a~n~g~~~a--~gd~i~~lD 110 (214)
|.++++++.+.. -=|++...|+ |.+. .+.+++++.. ..+++.+..+...|. .| ..+++.| +|.||++-+
T Consensus 106 l~~~~~~s~~~~-Pil~~~s~g~---Dp~~-~i~~lA~~~~~~~~~~~~islG~~~~~-~a-~~~l~~a~~~G~Wv~L~N 178 (707)
T PF03028_consen 106 LESIYEESSPTT-PILFILSPGS---DPSS-EIEQLAKKKGFGNKKLQSISLGSGQGP-EA-EKALKEAAKEGHWVLLQN 178 (707)
T ss_dssp HHHHHHCTTTTC--EEEEE-TT-----THH-HHHHHHHCTT-----EEEEETTSHHHH-HH-HHHHHHHHHHTSEEEEET
T ss_pred HHHHHHhcCCCC-ceEEEeCCCC---ChHH-HHHHHHHHHhhhhhheeecCCCCchHH-HH-HHHHHHHhcCCeEEEccc
Confidence 455555444432 1244444554 4444 5677777651 145677776554444 33 3344433 799999985
Q ss_pred CCCccCcCchHHHHHHHhc
Q psy1766 111 SHIEVNTHWLEPLLVPIAE 129 (214)
Q Consensus 111 ~D~~~~~~~l~~l~~~~~~ 129 (214)
. .+.+.|+..+-+.+..
T Consensus 179 ~--HL~~~wl~~Le~~l~~ 195 (707)
T PF03028_consen 179 C--HLAPSWLPQLEKKLES 195 (707)
T ss_dssp G--GGGCCCHHCHHHHHHC
T ss_pred c--hhHHHHHHHHHHHHhc
Confidence 4 4567898887777643
No 248
>KOG2977|consensus
Probab=36.35 E-value=4.1 Score=33.34 Aligned_cols=96 Identities=15% Similarity=-0.009 Sum_probs=55.1
Q ss_pred hHHHHHHH-HHHhcCC-CCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEE
Q psy1766 29 ATLYRSVQ-TLLSRTG-QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVL 106 (214)
Q Consensus 29 ~~l~~~l~-sl~~q~~-~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i 106 (214)
..|...+. +...+.. .....||.+-|+||.+ +.+.+.+..-..+. .-.|.+-..++..+.+.+...++.+.++.|.
T Consensus 21 ~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k-~~~lp~~~d~~~~~-~lsVIVpaynE~~ri~~mldeav~~le~ry~ 98 (323)
T KOG2977|consen 21 KFLSVYLFESHLPRPALENEETEITLDDPGSIK-SRTLPNIRDSPEKM-YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYL 98 (323)
T ss_pred HHHHHHHhhccCCCccccccceEEEEcCCCCcc-ceeCcccccChhhc-eeEEEEecCCcccchHHHHHHHHHHHHHHhc
Confidence 34444444 3333332 2233567777778874 34444443322221 1234444446677899999999988877776
Q ss_pred E---EEcCCCccCcCchHHHHHH
Q psy1766 107 V---FLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 107 ~---~lD~D~~~~~~~l~~l~~~ 126 (214)
. |-+.++.++++-....++.
T Consensus 99 ~~~~F~~eiiVvddgs~d~T~~~ 121 (323)
T KOG2977|consen 99 SDKSFTYEIIVVDDGSTDSTVEV 121 (323)
T ss_pred cCCCCceeEEEeCCCCchhHHHH
Confidence 6 7777777777666555544
No 249
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=35.20 E-value=1.7e+02 Score=21.04 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=14.4
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHh
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVK 72 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~ 72 (214)
-.||++-||-. ....+..+.+..
T Consensus 101 ~~iillTDG~~--~~~~~~~~~~~~ 123 (171)
T cd01461 101 PQIILLTDGEV--TNESQILKNVRE 123 (171)
T ss_pred cEEEEEeCCCC--CCHHHHHHHHHH
Confidence 47888888876 444555554443
No 250
>KOG1971|consensus
Probab=34.60 E-value=80 Score=27.37 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=46.5
Q ss_pred CChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCcc-CcCchHHHHHHHhc
Q psy1766 61 SNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAE 129 (214)
Q Consensus 61 d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~~-~~~~l~~l~~~~~~ 129 (214)
+.+.+.+++...++ ...+++-.....+.+.|++.+++..+ + ++.|+|..+ .|+.+..+....++
T Consensus 138 ~~~~~~~~~~~~e~--~p~~~v~~~~~~~~~ea~~~evE~~r--~-~~~dad~~i~~P~~~~~li~~~k~ 202 (415)
T KOG1971|consen 138 ANIKEFFRRHGSEY--SPGKFVFPMFQPDFSEARLMEVEHFR--K-FSVDADFVITRPNTLRNLIVLNKE 202 (415)
T ss_pred hccHHHHHHhcccc--CCeeEEeeccCccHHHHHHHHHHHhh--h-cccccceeccCChhHHHHHHHhhh
Confidence 45566666666554 33455555668899999999999998 4 889999887 68888777665544
No 251
>KOG2791|consensus
Probab=33.75 E-value=3e+02 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=24.2
Q ss_pred ceEEEEEEeCCCchHHHHHHHHHHhcCCCC
Q psy1766 16 STSVIICFYNEHPATLYRSVQTLLSRTGQS 45 (214)
Q Consensus 16 ~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~ 45 (214)
++-+||-++|++ .+|+-.++|+.+...-.
T Consensus 118 ~~vlV~qVHnRp-~Ylr~lveSlrk~kGI~ 146 (455)
T KOG2791|consen 118 RVVLVLQVHNRP-QYLRVLVESLRKVKGIS 146 (455)
T ss_pred eEEEEEEEcCcH-HHHHHHHHHHHhccCcc
Confidence 467788889999 99999999998766554
No 252
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=33.29 E-value=1.2e+02 Score=22.42 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC
Q psy1766 32 YRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS 85 (214)
Q Consensus 32 ~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~ 85 (214)
++.|.....+-.++ .+.|++|.||+ +..+++.+..+ .++.++.+.
T Consensus 6 K~~IA~~A~~~I~~--~~~Ifld~GtT----~~~la~~L~~~---~~ltVvTns 50 (161)
T PF00455_consen 6 KRAIARKAASLIED--GDTIFLDSGTT----TLELAKYLPDK---KNLTVVTNS 50 (161)
T ss_pred HHHHHHHHHHhCCC--CCEEEEECchH----HHHHHHHhhcC---CceEEEECC
Confidence 34444444444444 49999999997 55666665543 478888753
No 253
>PRK06683 hypothetical protein; Provisional
Probab=32.98 E-value=39 Score=22.06 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE
Q psy1766 32 YRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR 83 (214)
Q Consensus 32 ~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~ 83 (214)
.+++.++.+... --|||..|.+ +.+.+.+..++..+ +..+..+.
T Consensus 17 ~~v~kaik~gka----klViiA~Da~---~~~~~~i~~~~~~~-~Vpv~~~~ 60 (82)
T PRK06683 17 KRTLEAIKNGIV----KEVVIAEDAD---MRLTHVIIRTALQH-NIPITKVE 60 (82)
T ss_pred HHHHHHHHcCCe----eEEEEECCCC---HHHHHHHHHHHHhc-CCCEEEEC
Confidence 456667654322 2566666666 57888888888776 33444443
No 254
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=32.94 E-value=2.4e+02 Score=22.06 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCccccCCcCCCCCCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766 1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH 80 (214)
Q Consensus 1 ~~~~~~~~~~~~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~ 80 (214)
|++||....++-..+.+ -+ |.+ ..+++.|+-|.+..- .+|+||..- ..+..+-+..++ .|+
T Consensus 10 ~gsR~~plT~~tpK~Ll----kV-~g~-plIErqI~~L~e~gI----~dI~IVvGY------lkE~FeYLkdKy---~vt 70 (231)
T COG4750 10 LGSRFVPLTQSTPKSLL----KV-NGE-PLIERQIEQLREAGI----DDITIVVGY------LKEQFEYLKDKY---DVT 70 (231)
T ss_pred cccccccccccCChHHH----Hh-cCc-ccHHHHHHHHHHCCC----ceEEEEeee------hHHHHHHHHHhc---CeE
Confidence 35566655544222221 12 455 688889888765543 377777543 445566666665 899
Q ss_pred EEEcCCCcc--hHHHHHhhhhhcCCCEEEEEcCCCccCcCch
Q psy1766 81 LYRTSKREG--LIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120 (214)
Q Consensus 81 ~i~~~~~~G--~~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l 120 (214)
++.++.-.- --...-.+...-+..|| +|+|..+..+-+
T Consensus 71 LvyN~kY~~yNn~ySlyla~d~l~ntYi--idsDnyl~kNif 110 (231)
T COG4750 71 LVYNPKYREYNNIYSLYLARDFLNNTYI--IDSDNYLTKNIF 110 (231)
T ss_pred EEeCchHHhhhhHHHHHHHHHHhcccEE--eccchHhhhhhh
Confidence 988653211 11122223333445555 799988776643
No 255
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=32.30 E-value=2.1e+02 Score=22.04 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=29.9
Q ss_pred CceEEEEEEeCCCchHH-HHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHH
Q psy1766 15 PSTSVIICFYNEHPATL-YRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFV 71 (214)
Q Consensus 15 p~vSVIIp~~n~~~~~l-~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~ 71 (214)
++++.|+.+|...+..+ .+.++.+++... .||++||.+-. +. .+.++.+.
T Consensus 113 ~~V~rVvV~ykDRL~RFGfe~le~~~~a~~----~eivvv~~~e~--~~-eELveDli 163 (193)
T COG2452 113 NSVRRVVVSYKDRLNRFGFELVEAVCKAHN----VEIVVVNQEDK--DS-EELVEDLV 163 (193)
T ss_pred CceeEEEEEccchHhHHhHHHHHHHHHhcC----cEEEEecCCCC--CH-HHHHHHHH
Confidence 67999999997652222 333444433322 59999988876 22 55555543
No 256
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=32.30 E-value=2.5e+02 Score=22.02 Aligned_cols=58 Identities=17% Similarity=0.051 Sum_probs=33.4
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH-hhhhhcCCCEEEEEcCCCcc
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM-FGAKYATGKVLVFLDSHIEV 115 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n-~g~~~a~gd~i~~lD~D~~~ 115 (214)
++++.||..-+ +--.+..+. ++|..++.+ ....+.+.. ..++.-..++++++|+|-..
T Consensus 98 ~kvl~vdIdi~--~~~p~a~e~-------p~i~f~egs-s~dpai~eqi~~~~~~y~kIfvilDsdHs~ 156 (237)
T COG3510 98 FKVLGVDIDIK--PLDPAAREV-------PDILFIEGS-STDPAIAEQIRRLKNEYPKIFVILDSDHSM 156 (237)
T ss_pred ceEEEEecccC--cCChhhhcC-------CCeEEEeCC-CCCHHHHHHHHHHhcCCCcEEEEecCCchH
Confidence 68888888766 333344332 688888744 223332222 22222234889999998654
No 257
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.27 E-value=3.1e+02 Score=23.14 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=47.2
Q ss_pred CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcC--
Q psy1766 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT-- 102 (214)
Q Consensus 25 n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~-- 102 (214)
... ..|.+++..+....... +++||-+---. ..+.+.+.++-... ... .++. +.....+.|.-.|...+.
T Consensus 32 ~~~-Sllq~T~~R~~~l~~~~---~~~vVtne~~~-f~v~eql~e~~~~~-~~~-illE-P~gRnTApAIA~aa~~~~~~ 103 (333)
T COG0836 32 GDL-SLLQQTVKRLAFLGDIE---EPLVVTNEKYR-FIVKEQLPEIDIEN-AAG-IILE-PEGRNTAPAIALAALSATAE 103 (333)
T ss_pred CCC-cHHHHHHHHHhhcCCcc---CeEEEeCHHHH-HHHHHHHhhhhhcc-ccc-eEec-cCCCCcHHHHHHHHHHHHHh
Confidence 344 78889998887644433 88888764331 22333333322221 123 2333 445555566665555442
Q ss_pred -C-CEEEEEcCCCccCc
Q psy1766 103 -G-KVLVFLDSHIEVNT 117 (214)
Q Consensus 103 -g-d~i~~lD~D~~~~~ 117 (214)
+ ..++++-+|-.+..
T Consensus 104 ~~d~~~lVlpsDH~I~d 120 (333)
T COG0836 104 GGDALVLVLPSDHVIAD 120 (333)
T ss_pred CCCcEEEEecCcceecc
Confidence 2 37888999988754
No 258
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=31.74 E-value=28 Score=27.91 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCccCcCchHHHHHHHhcCCCEEEE
Q psy1766 102 TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 102 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~vv~ 136 (214)
..+|++++|+|..+...-|..++..+.......++
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG 120 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIG 120 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCCCccCEEee
Confidence 56999999999999888888888888665554443
No 259
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=31.46 E-value=59 Score=25.60 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhcCCCEEEEee
Q psy1766 77 GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI 138 (214)
Q Consensus 77 ~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~vv~~~ 138 (214)
.++.++..+ ..|...|.+.|+.....+-++++-+|.- +.+.-|..++....+ .+++++|.
T Consensus 63 ~g~~vl~d~-~~gLN~Al~~a~~~~~~~~vlvl~aDLPll~~~dl~~~l~~~~~-~~vviap~ 123 (217)
T PF01983_consen 63 LGAEVLPDP-GRGLNAALNAALAAAGDDPVLVLPADLPLLTPEDLDALLAAAGR-ADVVIAPD 123 (217)
T ss_dssp -SSEEEE----S-HHHHHHHHHH-H--S-EEEE-S--TT--HHHHHHHCT-SS---SEEEEE-
T ss_pred cCCeEecCC-CCCHHHHHHHHHhccCCCceEEeecCCccCCHHHHHHHHhccCC-CCEEEeCC
Confidence 477787744 6788888888855455677888889987 478888888877543 46788875
No 260
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=30.06 E-value=1.4e+02 Score=25.23 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=39.2
Q ss_pred cEEEEEc-CCCcchHHHHHhhhhhcCCCEEEEEcCCCc-cCcCchHHHHHHHhc
Q psy1766 78 RVHLYRT-SKREGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAE 129 (214)
Q Consensus 78 ~v~~i~~-~~~~G~~~a~n~g~~~a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~ 129 (214)
.+.++.. ....|+..+.-.|++.+..+.++++=.|.. ++++.+..+++....
T Consensus 219 ~v~~I~D~~~~~GPlagI~aaL~~~~~~~~lVl~cDmP~l~~~~l~~L~~~~~~ 272 (346)
T PRK14500 219 NLPTLPDRGESVGPISGILTALQSYPGVNWLVVACDLAYLNSETVEKLLAHYRQ 272 (346)
T ss_pred CCeEEeCCCCCCChHHHHHHHHHhCCCCCEEEEECCcCCCCHHHHHHHHHhhhc
Confidence 3444432 335699999999999887666788899988 578999999887754
No 261
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=29.65 E-value=2.5e+02 Score=24.92 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=50.3
Q ss_pred EEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh
Q psy1766 20 IICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK 99 (214)
Q Consensus 20 IIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~ 99 (214)
||.+--.. +.+...++.+.....+. -||||-++..+..|.+..+++.+ .+++++..+-..|...|++
T Consensus 70 Iil~v~~~-~~v~~vi~~l~~~L~~g----~iIID~gn~~~~dt~~r~~~l~~----~Gi~fldapVSGG~~gA~~---- 136 (470)
T PTZ00142 70 VILLIKAG-EAVDETIDNLLPLLEKG----DIIIDGGNEWYLNTERRIKRCEE----KGILYLGMGVSGGEEGARY---- 136 (470)
T ss_pred EEEEeCCh-HHHHHHHHHHHhhCCCC----CEEEECCCCCHHHHHHHHHHHHH----cCCeEEcCCCCCCHHHHhc----
Confidence 33333333 45666666665443332 35677665532456666666554 3888998877777776664
Q ss_pred hcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 100 YATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 100 ~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
|. .++.-+|.. .-+.++.+++.+
T Consensus 137 ---G~-~lm~GG~~~-a~~~~~piL~~i 159 (470)
T PTZ00142 137 ---GP-SLMPGGNKE-AYDHVKDILEKC 159 (470)
T ss_pred ---CC-EEEEeCCHH-HHHHHHHHHHHH
Confidence 55 455555432 123355555555
No 262
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=28.77 E-value=2.7e+02 Score=24.15 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhc
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA 101 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a 101 (214)
+.+.++|..+... |+. .-++||.-|+. ....+.+.+...+....+++++..+...|.......|++.+
T Consensus 70 e~~~rtL~g~a~h--PNv-ggvlvvgLGCE--~~~~~~l~~~i~~~g~kpv~~l~iQ~~GGt~~~i~~~~~~~ 137 (396)
T PF04295_consen 70 ELTRRTLAGLARH--PNV-GGVLVVGLGCE--NNQPERLAEAIAERGPKPVEFLSIQEEGGTEDTIEAGVELA 137 (396)
T ss_pred HHHHHHHHHHccC--CCe-eeEEEEecCCc--cCcHHHHHHhhhccCCCceEEEEEeehhhHHHHHHHHHHHH
Confidence 5666777766432 232 68999999998 56666666666655236788888777777777777766543
No 263
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=28.70 E-value=2.5e+02 Score=21.97 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=45.4
Q ss_pred EEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh--h--cCCCEEEEEcCCCccCcCchHHHH
Q psy1766 49 EIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK--Y--ATGKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 49 eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~--~--a~gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
.||+.+|- .+..+++...+...+++++. +.+.|.-..|..--. . ..+.++ ++.-..+.......++
T Consensus 6 ~Iiit~d~-------e~~~~~l~~~~~~~~~~~f~-~~~i~Vd~iReii~~~~~~~~~~k~i--I~~a~~l~~~A~NaLL 75 (206)
T PRK08485 6 KIIITSDF-------EESKEELINEFGKKNLRFFI-KEEFKIEDAKEVIAEAYIAESEEKII--VIAAPSYGIEAQNALL 75 (206)
T ss_pred eEEEeCCH-------HHHHHHHHHhcCCCceEEEC-CCCCCHHHHHHHHHHHhhCCCCcEEE--EEchHhhCHHHHHHHH
Confidence 56666543 33455555555456777776 346776665553211 1 133443 3333467788888888
Q ss_pred HHHhcCCCEEEE
Q psy1766 125 VPIAERTNTVTV 136 (214)
Q Consensus 125 ~~~~~~~~~vv~ 136 (214)
..+++.+.-++.
T Consensus 76 K~LEEPp~~~~f 87 (206)
T PRK08485 76 KILEEPPKNICF 87 (206)
T ss_pred HHhcCCCCCeEE
Confidence 888887665544
No 264
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=28.41 E-value=50 Score=26.04 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=45.5
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcC-CCcEEEEEcCCCcchHHHHHhhhhhcCCCE-EEEEcCCCccCcCchHHHHH
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLN-NGRVHLYRTSKREGLIRARMFGAKYATGKV-LVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~-i~~lD~D~~~~~~~l~~l~~ 125 (214)
-+|+-||-.++ -.++.++..++.. ..+|.++.. | .+.-..-+...+.| ++|+|+|-.-.|.+++..+.
T Consensus 85 g~l~tiE~~~e----~~~~A~~n~~~ag~~~~i~~~~~----g--dal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~ 154 (219)
T COG4122 85 GRLTTIERDEE----RAEIARENLAEAGVDDRIELLLG----G--DALDVLSRLLDGSFDLVFIDADKADYPEYLERALP 154 (219)
T ss_pred CeEEEEeCCHH----HHHHHHHHHHHcCCcceEEEEec----C--cHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHH
Confidence 36666766653 4445555555442 223444441 2 22222222333444 78999999999999999999
Q ss_pred HHhcCCCEE
Q psy1766 126 PIAERTNTV 134 (214)
Q Consensus 126 ~~~~~~~~v 134 (214)
.+..+..++
T Consensus 155 lLr~GGliv 163 (219)
T COG4122 155 LLRPGGLIV 163 (219)
T ss_pred HhCCCcEEE
Confidence 987665443
No 265
>KOG1460|consensus
Probab=28.32 E-value=2.9e+02 Score=23.21 Aligned_cols=97 Identities=12% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhh---hcCCCEE
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAK---YATGKVL 106 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~---~a~gd~i 106 (214)
.+..-|..+.+-..- .||++|-=-.+ +.....+.+..+++ ...|+|++-....|.++++-.--+ .-.-+-+
T Consensus 37 mI~Hhi~ac~qi~~l---~eI~LvGFy~e--~~f~~fis~~~~e~-~~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~v 110 (407)
T KOG1460|consen 37 MIHHHISACKQISGL---AEILLVGFYEE--RVFTDFISAIQQEF-KVPVRYLREDNPLGTAGGLYHFRDQILAGSPSAV 110 (407)
T ss_pred hhhhhHHHHhcccch---hheeEEecccc--hHHHHHHHHHHhhc-ccchhhhccCCCCCcccceeehhhHHhcCCCceE
Confidence 444555554433322 48988876655 56777778877777 567999987666676554332222 2245778
Q ss_pred EEEcCCCccCcCchHHHHHHHhcCCCE
Q psy1766 107 VFLDSHIEVNTHWLEPLLVPIAERTNT 133 (214)
Q Consensus 107 ~~lD~D~~~~~~~l~~l~~~~~~~~~~ 133 (214)
++|++|.-.+ --|+.|++........
T Consensus 111 FvlnaDVCcs-fPl~~ml~ahr~~g~~ 136 (407)
T KOG1460|consen 111 FVLNADVCCS-FPLQDMLEAHRRYGGI 136 (407)
T ss_pred EEEecceecC-CcHHHHHHHHhhcCCc
Confidence 8889986432 3377777776544433
No 266
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=27.91 E-value=1.2e+02 Score=24.06 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=16.3
Q ss_pred HHHHHhhhhh-cCCCEEEEEcCCCccC
Q psy1766 91 IRARMFGAKY-ATGKVLVFLDSHIEVN 116 (214)
Q Consensus 91 ~~a~n~g~~~-a~gd~i~~lD~D~~~~ 116 (214)
..+...++.. -+++||++||+|..+.
T Consensus 64 ~~~lr~~m~~~P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 64 IPALRAAMKKYPEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHHHHHHHHH-TT-SEEEEE-TTEEE-
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCeEEE
Confidence 3444455544 4789999999999864
No 267
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=27.60 E-value=86 Score=27.02 Aligned_cols=104 Identities=18% Similarity=0.209 Sum_probs=53.4
Q ss_pred ccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHH-HHhhhhhc-CCCEEEEEcCCCccCcCchHHHH
Q psy1766 47 LHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRA-RMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLL 124 (214)
Q Consensus 47 ~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a-~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~ 124 (214)
-.|+-+||..+. +...+.+.+ ..+..+++.=.|.+..-. .-.-.+.| +..+.+++|.-. -.| | ++
T Consensus 126 Gi~v~fvd~~d~--~~~~~aI~~------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~-atp-y---l~ 192 (426)
T COG2873 126 GIEVRFVDPDDP--ENFEAAIDE------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTF-ATP-Y---LC 192 (426)
T ss_pred CcEEEEeCCCCH--HHHHHHhCc------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCC-Ccc-e---ec
Confidence 369999988765 333333332 134444443334332211 11111222 234556666532 233 3 45
Q ss_pred HHHhcCCCEEEEeeeeeecCCcceeecCCceeeeeEecc
Q psy1766 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGL 163 (214)
Q Consensus 125 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 163 (214)
+.++.+.++|+-..-..+.+..-..-|.-...|.|+|..
T Consensus 193 rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~ 231 (426)
T COG2873 193 RPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTA 231 (426)
T ss_pred chhhcCCCEEEEeecccccCCccccceEEEeCCcccccc
Confidence 677788888887766666555444433334455677764
No 268
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=27.41 E-value=68 Score=20.89 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEE
Q psy1766 31 LYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYR 83 (214)
Q Consensus 31 l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~ 83 (214)
..+++.++.+... .-||+..|.| +.+...+..++..+ +..+..+.
T Consensus 16 ~~~v~kai~~gka----klViiA~D~~---~~~~~~i~~~c~~~-~Vp~~~~~ 60 (82)
T PRK13602 16 TKQTVKALKRGSV----KEVVVAEDAD---PRLTEKVEALANEK-GVPVSKVD 60 (82)
T ss_pred HHHHHHHHHcCCe----eEEEEECCCC---HHHHHHHHHHHHHc-CCCEEEEC
Confidence 3456666654322 2445555555 46888888888876 33443333
No 269
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=27.29 E-value=2.7e+02 Score=24.96 Aligned_cols=94 Identities=14% Similarity=0.154 Sum_probs=52.9
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHh
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMF 96 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~ 96 (214)
.-+||.+--.. +.+...+..++....+. =||||-++..+..+.+..+.+.+ .+++++..+-..|...|++
T Consensus 73 ~dvIi~~v~~~-~aV~~Vi~gl~~~l~~G----~iiID~sT~~~~~t~~~~~~l~~----~Gi~fldapVSGG~~gA~~- 142 (493)
T PLN02350 73 PRSVIILVKAG-APVDQTIKALSEYMEPG----DCIIDGGNEWYENTERRIKEAAE----KGLLYLGMGVSGGEEGARN- 142 (493)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHhhcCCC----CEEEECCCCCHHHHHHHHHHHHH----cCCeEEeCCCcCCHHHhcC-
Confidence 34455555555 56666666666543333 26677766643345555555443 3789999877767666553
Q ss_pred hhhhcCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766 97 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 97 g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 128 (214)
|. .++.-+|... -+.++.+++.+.
T Consensus 143 ------G~-~im~GG~~~a-~~~v~pvL~~ia 166 (493)
T PLN02350 143 ------GP-SLMPGGSFEA-YKNIEDILEKVA 166 (493)
T ss_pred ------CC-eEEecCCHHH-HHHHHHHHHHHh
Confidence 66 5566555332 233555555553
No 270
>PRK04017 hypothetical protein; Provisional
Probab=27.29 E-value=2.4e+02 Score=20.33 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=37.4
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEE
Q psy1766 28 PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 107 (214)
Q Consensus 28 ~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~ 107 (214)
++.+.+.++.|.+..... -+|||..-++ .+.++++. ....++... +.+....... +..-..++|+
T Consensus 6 ~~~~~e~i~~L~e~s~~g---~vIVVEGk~D-----~~~L~~lG-----v~~~iI~t~-g~~~~~~~e~-ia~~~r~VII 70 (132)
T PRK04017 6 YERFEEIIEELKEFSEAG---APIIVEGKRD-----VESLRKLG-----VEGEIIKVS-RTPLAEIAEL-IASRGKEVII 70 (132)
T ss_pred HHHHHHHHHHHHHhcCCC---CEEEEeCccH-----HHHHHHcC-----CCccEEEEC-CeecchHHHH-HHhcCCeEEE
Confidence 467888888888777643 5566655443 23344431 112233322 2233322222 2233458999
Q ss_pred EEcCCC
Q psy1766 108 FLDSHI 113 (214)
Q Consensus 108 ~lD~D~ 113 (214)
+.|.|.
T Consensus 71 LTD~D~ 76 (132)
T PRK04017 71 LTDFDR 76 (132)
T ss_pred EECCCc
Confidence 999995
No 271
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.05 E-value=3e+02 Score=21.38 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEEEECC-CCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEE
Q psy1766 28 PATLYRSVQTLLSRTGQSLLHEIILVNDF-SEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVL 106 (214)
Q Consensus 28 ~~~l~~~l~sl~~q~~~~~~~eiivVdd~-s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i 106 (214)
.+++.+..+.+.+.. . ..|.+.|-. .-.|..+.++++.+.+.+++..+.+.-+ .+.|.+-|.-.+.-.+..++|
T Consensus 136 ~~~~~~~~~~~~~~g-~---~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~H-nd~Gla~An~laA~~aGa~~i 210 (237)
T PF00682_consen 136 PEELLELAEALAEAG-A---DIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAH-NDLGLAVANALAALEAGADRI 210 (237)
T ss_dssp HHHHHHHHHHHHHHT-----SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEB-BTTS-HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHcC-C---eEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEec-CCccchhHHHHHHHHcCCCEE
Confidence 366666666665442 2 266666663 3323456667777777763345555444 377877776666656666664
No 272
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=26.89 E-value=3.2e+02 Score=21.64 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=57.3
Q ss_pred CCceEEEEEEeCCC-------------chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEE
Q psy1766 14 LPSTSVIICFYNEH-------------PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVH 80 (214)
Q Consensus 14 ~p~vSVIIp~~n~~-------------~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~ 80 (214)
|++.-.|||++... .+.+..+++..++... ++-|||.-.| +...+..+++ +..+.
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~----fd~VviSsDs---~~Il~~A~~y-----gak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKL----FDKVVISSDS---EEILEEAKKY-----GAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCc----cceEEEcCCc---HHHHHHHHHh-----Ccccc
Confidence 34566777877543 2455667776665554 4445554433 3444444444 23333
Q ss_pred EEEcCCCcc--hHHHH---Hhhhhhc--CCCEEEEEcCCCcc-CcCchHHHHHHHhcCCCEE
Q psy1766 81 LYRTSKREG--LIRAR---MFGAKYA--TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTV 134 (214)
Q Consensus 81 ~i~~~~~~G--~~~a~---n~g~~~a--~gd~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~v 134 (214)
+.+ ++... .+... -.+++.. ..+.++.+++-..+ ...-|++..+.+.++....
T Consensus 69 ~~R-p~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~s 129 (228)
T COG1083 69 LKR-PKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDS 129 (228)
T ss_pred ccC-ChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcc
Confidence 333 33322 22211 1222222 45778888887765 5677888888886654433
No 273
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=26.82 E-value=1.6e+02 Score=18.07 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCccC-cCchHHHHHHHhcCCCEEEE
Q psy1766 102 TGKVLVFLDSHIEVN-THWLEPLLVPIAERTNTVTV 136 (214)
Q Consensus 102 ~gd~i~~lD~D~~~~-~~~l~~l~~~~~~~~~~vv~ 136 (214)
...-+++++++..+. +.-++.+.+.++++...++.
T Consensus 34 ~~~tll~i~~~~~~~~~~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 34 DDGTLLVIGPDLRLSEPEEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred CCCEEEEEeCCCCCCchHHHHHHHHHHHcCCEEEEe
Confidence 667788999997777 48889998888888777664
No 274
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=26.78 E-value=1.8e+02 Score=18.60 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=39.0
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEEcCCC
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 113 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~lD~D~ 113 (214)
.++.++-.-|. | -+++......+ .++.++-+.+.|-..|+...++..+..+-+.+-+|.
T Consensus 10 ~~~~~lvS~s~--D--Ge~ia~~~~~~---G~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSR--D--GELIARVLERF---GFRTIRGSSSRGGARALREMLRALKEGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCc--C--HHHHHHHHHHc---CCCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 35666666665 3 24555555554 888888888889888888888887654444444443
No 275
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=26.63 E-value=2.8e+02 Score=20.85 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHhcCCCCCccEEEEEECC--CCCCCChHHHHHHHHhhcCCCcEEEEEc
Q psy1766 28 PATLYRSVQTLLSRTGQSLLHEIILVNDF--SEYPSNLHGEVETFVKGLNNGRVHLYRT 84 (214)
Q Consensus 28 ~~~l~~~l~sl~~q~~~~~~~eiivVdd~--s~~~d~t~~~~~~~~~~~~~~~v~~i~~ 84 (214)
.+.+.+.++.+.++.... .|+||-|+ |.+ |...+.++.+.+.. +|.++++
T Consensus 61 ~~~~~~~~~~l~~~~~~~---~v~IvSNsaGs~~-d~~~~~a~~~~~~l---gIpvl~h 112 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKD---RVLIVSNSAGSSD-DPDGERAEALEKAL---GIPVLRH 112 (168)
T ss_pred CHHHHHHHHHHHHHCCCC---eEEEEECCCCccc-CccHHHHHHHHHhh---CCcEEEe
Confidence 466777777777665433 56666663 453 44566677766654 5665543
No 276
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=26.38 E-value=3.5e+02 Score=23.97 Aligned_cols=68 Identities=12% Similarity=0.079 Sum_probs=38.7
Q ss_pred EEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHH
Q psy1766 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARM 95 (214)
Q Consensus 19 VIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n 95 (214)
+||.+--.. ..+...+..+.....+ .-||||-++..+..+.+..+++.+ ..++++..+--.|...|++
T Consensus 66 vIil~v~~~-~~v~~Vi~~l~~~L~~----g~iIID~gns~~~~t~~~~~~l~~----~gi~fvdapVsGG~~gA~~ 133 (467)
T TIGR00873 66 KIMLMVKAG-APVDAVINQLLPLLEK----GDIIIDGGNSHYPDTERRYKELKA----KGILFVGSGVSGGEEGARK 133 (467)
T ss_pred EEEEECCCc-HHHHHHHHHHHhhCCC----CCEEEECCCcCHHHHHHHHHHHHh----cCCEEEcCCCCCCHHHHhc
Confidence 344444444 4556666666544322 336677775432445666665544 3788998776667665554
No 277
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=25.36 E-value=38 Score=26.91 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=45.1
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCC--------CccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQS--------LLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS 85 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~--------~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~ 85 (214)
|++|.||.+.-.|. ..|.+.+.......... ...+|+++--|--. -+..-....+..++ ++.++-
T Consensus 1 m~~IgIi~Am~~E~-~~l~~~l~~~~~~~~~~~~~~~g~~~~~~vv~~~sGiGk-vnAA~~~~~li~~f---~~~~II-- 73 (236)
T PRK06714 1 MKRIAIVAAWEPEL-TYLHQSYPSERIEKRAAWEFHFHTINDLEIISVITGVGK-VSCASCVQLLISEF---QPDELF-- 73 (236)
T ss_pred CCeEEEEeeCHHHH-HHHHHhccccceEEEcCeEEEEEEECCEEEEEEeCCCCH-HHHHHHHHHHHHhC---CCCEEE--
Confidence 45576666665555 66666665432211111 01488888888652 22333344455555 333443
Q ss_pred CCcchHHHHHhhhhhcCCCEEEE
Q psy1766 86 KREGLIRARMFGAKYATGKVLVF 108 (214)
Q Consensus 86 ~~~G~~~a~n~g~~~a~gd~i~~ 108 (214)
|.|.+++.+..++ -||+++-
T Consensus 74 -n~G~aG~l~~~l~--iGDvVi~ 93 (236)
T PRK06714 74 -MTGICGSLSNKVK--NGHIVVA 93 (236)
T ss_pred -EEEcccCCCCCCC--CCCEEEE
Confidence 4577777776554 5666554
No 278
>PRK06455 riboflavin synthase; Provisional
Probab=25.16 E-value=1.6e+02 Score=21.83 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCceEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEE-ECCCCCCCChHHHHHHHHhhcCCCcEEEE----EcCCCc
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV-NDFSEYPSNLHGEVETFVKGLNNGRVHLY----RTSKRE 88 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivV-dd~s~~~d~t~~~~~~~~~~~~~~~v~~i----~~~~~~ 88 (214)
|+++.||...+|+. ..+..+++.+.+.. +. ..|.++ .-|+- +..-.++++.+...-..+..+ ..+...
T Consensus 1 ~~kigIV~s~fn~~-~L~~gAi~~L~~~g-~~--~~I~v~~VPGa~---ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d 73 (155)
T PRK06455 1 MMKIGIADTTFARV-DMGSAAIDELRKLD-PS--AKIIRYTVPGIK---DLPVAAKKLIEEEGCDIVMALGMPGPTEKDK 73 (155)
T ss_pred CcEEEEEEEecchH-HHHHHHHHHHHhcC-CC--CceEEEECCCHH---HHHHHHHHHHhcCCCCEEEEecceeccCcch
Confidence 57899999999998 78888888887755 33 244343 33443 344455566543201122111 112122
Q ss_pred chHHHHHhhhhhcC---C-CE-EEEEcCCCccCcCchHHHHH
Q psy1766 89 GLIRARMFGAKYAT---G-KV-LVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 89 G~~~a~n~g~~~a~---g-d~-i~~lD~D~~~~~~~l~~l~~ 125 (214)
=.+.+...|+...+ + .+ -+|+.-|..-++.-|..+..
T Consensus 74 ~Va~~vS~GL~~lsL~t~~PVi~v~vhede~~~~~~l~~~~~ 115 (155)
T PRK06455 74 YCAHEASIGLIMAQLMTNKHIIEVFVHEDEAKDEKELKELAE 115 (155)
T ss_pred hHHHHHHHHHHHHHhhhCCCEEEEEecccccCCHHHHHHHHH
Confidence 24555556665442 2 33 36778887777766666544
No 279
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=25.05 E-value=4.7e+02 Score=22.92 Aligned_cols=96 Identities=13% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCCceEEEEEEe-CCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc----CCCcEEEEEcCC-
Q psy1766 13 TLPSTSVIICFY-NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL----NNGRVHLYRTSK- 86 (214)
Q Consensus 13 ~~p~vSVIIp~~-n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~----~~~~v~~i~~~~- 86 (214)
+.|++..+|.++ ++. +.|++.|.++... .+ +-+|=+|--|+ +.-...+....+.. ..++|.++....
T Consensus 76 ~~~r~AYLI~~h~~d~-~~l~RLL~aLYhp--rN--~y~IHlDkKS~--~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~ 148 (421)
T PLN03183 76 KLPRFAYLVSGSKGDL-EKLWRTLRALYHP--RN--QYVVHLDLESP--AEERLELASRVENDPMFSKVGNVYMITKANL 148 (421)
T ss_pred CCCeEEEEEEecCCcH-HHHHHHHHHhcCC--Cc--eEEEEecCCCC--hHHHHHHHHHhhccchhhccCcEEEEeccee
Confidence 578999999998 555 8888888887422 12 34444677666 33333333222210 025787765311
Q ss_pred -Ccc---hHHHHH----hhhhh-cCCCEEEEEcCCCcc
Q psy1766 87 -REG---LIRARM----FGAKY-ATGKVLVFLDSHIEV 115 (214)
Q Consensus 87 -~~G---~~~a~n----~g~~~-a~gd~i~~lD~D~~~ 115 (214)
..| ...|-- ..++. ..-||++.|-+.|.+
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyP 186 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYP 186 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCccc
Confidence 222 222222 22232 255899999888875
No 280
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=24.87 E-value=1e+02 Score=26.18 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=35.0
Q ss_pred ceEEEEEEeCCC-----chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 16 STSVIICFYNEH-----PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 16 ~vSVIIp~~n~~-----~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
.+.|.+.+=++. -..+.+.|+.++.+..++ .+|+|-||.+| +....+++.
T Consensus 66 dveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~---~~i~VsDGaeD-E~vlPiIqS 120 (344)
T PF04123_consen 66 DVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPD---SAIVVSDGAED-ERVLPIIQS 120 (344)
T ss_pred CeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCC---EEEEEecChhh-hhhhHhhhc
Confidence 466666664433 256788899999888876 99999999984 345555554
No 281
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=24.56 E-value=3e+02 Score=24.45 Aligned_cols=61 Identities=11% Similarity=0.252 Sum_probs=41.8
Q ss_pred EEEEECCCCCCCChHHHHHHHHhhcCC-CcEEEEEcCCCcchHHHHHhhhh--hcCCCEEEEEc
Q psy1766 50 IILVNDFSEYPSNLHGEVETFVKGLNN-GRVHLYRTSKREGLIRARMFGAK--YATGKVLVFLD 110 (214)
Q Consensus 50 iivVdd~s~~~d~t~~~~~~~~~~~~~-~~v~~i~~~~~~G~~~a~n~g~~--~a~gd~i~~lD 110 (214)
++|+||-...|.+....++.....++. .+|..+..+..+......-.-+. ....|-|+++|
T Consensus 325 ~~viDDYaHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt~~~~~dF~~~l~~AD~v~l~~ 388 (459)
T COG0773 325 VTVIDDYAHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRTRDLLDDFAKALSDADEVILLD 388 (459)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhHHHHHHHHHHHHhcCCEEEEec
Confidence 799999877656677778887777753 67888877766654443333222 23678888887
No 282
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=24.49 E-value=1.9e+02 Score=20.29 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhhcCCCEEEEE
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFL 109 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~a~gd~i~~l 109 (214)
-+.++...+.+..- --|++..|-++ .++...+..++..+ ...+.++......| .+.+... ...+...
T Consensus 31 G~~e~~Kai~~g~a----~LVviA~Dv~P--~~~~~~l~~lc~~~-~vpyv~V~sk~~LG--~a~g~~~----~~vv~i~ 97 (116)
T COG1358 31 GTNEVTKAIERGKA----KLVVIAEDVSP--EELVKHLPALCEEK-NVPYVYVGSKKELG--KAVGKEV----RKVVAIV 97 (116)
T ss_pred hHHHHHHHHHcCCC----cEEEEecCCCH--HHHHHHHHHHHHhc-CCCEEEeCCHHHHH--HHhCCCc----ceeEEEe
Confidence 34455555544222 37788888886 67888888888865 34444554333333 3333222 4556666
Q ss_pred cCCCccCcCchHHHHHH
Q psy1766 110 DSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 110 D~D~~~~~~~l~~l~~~ 126 (214)
|.... ++++.++..
T Consensus 98 ~~~~~---~~~~~l~~~ 111 (116)
T COG1358 98 DKGFA---KKLEDLVEK 111 (116)
T ss_pred ehhhh---hHHHHHHHH
Confidence 65433 555555443
No 283
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=24.38 E-value=1.6e+02 Score=18.34 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=18.8
Q ss_pred cEEEEEECCCCCCCChHHHHHHHHh
Q psy1766 48 HEIILVNDFSEYPSNLHGEVETFVK 72 (214)
Q Consensus 48 ~eiivVdd~s~~~d~t~~~~~~~~~ 72 (214)
.++.|+|.-+.. |-|..++.+...
T Consensus 33 ~~~~V~D~ktge-DiT~~iL~QIi~ 56 (64)
T PF07879_consen 33 EDFKVVDAKTGE-DITRSILLQIIL 56 (64)
T ss_pred CeEEEEECCCCc-ccHHHHHHHHHH
Confidence 389999998876 778888877644
No 284
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=24.36 E-value=3.2e+02 Score=20.74 Aligned_cols=87 Identities=22% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcC-CCcc--hHHHHHhhhhhcCCC-EEEEEcCCCccCcCchHHHHH
Q psy1766 50 IILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTS-KREG--LIRARMFGAKYATGK-VLVFLDSHIEVNTHWLEPLLV 125 (214)
Q Consensus 50 iivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~-~~~G--~~~a~n~g~~~a~gd-~i~~lD~D~~~~~~~l~~l~~ 125 (214)
+|+|-||.. -....++..+.+. ..+.+..+ .|.. .+.-.-..++.|..| .++.+|+-...-.+.=++.+.
T Consensus 2 VIlvTDGD~---~A~ravE~aa~~i---GgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~ 75 (180)
T PF14097_consen 2 VILVTDGDE---YAKRAVEIAAKNI---GGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALE 75 (180)
T ss_pred EEEEECChH---HHHHHHHHHHHHh---CcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHH
Confidence 788888853 3455555555553 55666543 2322 345556667777765 555667766777888899999
Q ss_pred HHhcCCCEEEEeeeeee
Q psy1766 126 PIAERTNTVTVPIIDII 142 (214)
Q Consensus 126 ~~~~~~~~vv~~~~~~~ 142 (214)
.+..++.+-+.+.+-+-
T Consensus 76 ~v~~h~~IeVLG~iAVA 92 (180)
T PF14097_consen 76 YVANHPDIEVLGAIAVA 92 (180)
T ss_pred HHHcCCCceEEEEEEEE
Confidence 99888888777766654
No 285
>PLN02718 Probable galacturonosyltransferase
Probab=23.71 E-value=5.8e+02 Score=23.55 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=56.2
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCC---------
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKR--------- 87 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~--------- 87 (214)
.-|++.+-| - -...-++.|++..+..+..+.+.|+.|+-+ +...+.+..+...+ +..|.++..+.-
T Consensus 314 ~Hia~~sDN-v-laasVvInSil~Ns~np~~ivFHVvTD~is--~~~mk~wf~l~~~~-~a~I~V~~Iddf~~lp~~~~~ 388 (603)
T PLN02718 314 YHYVVFSDN-V-LACSVVVNSTISSSKEPEKIVFHVVTDSLN--YPAISMWFLLNPPG-KATIQILNIDDMNVLPADYNS 388 (603)
T ss_pred eeEEEEcCC-c-eeEEEEhhhhhhccCCCCcEEEEEEeCCCC--HHHHHHHHHhCCCC-CcEEEEEecchhccccccchh
Confidence 445555544 2 345567788877633332378888888876 45555444433322 345666553310
Q ss_pred ---------cc----hHHHHHhhhhhc-CCCEEEEEcCCCccCcCchHHHHHH
Q psy1766 88 ---------EG----LIRARMFGAKYA-TGKVLVFLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 88 ---------~G----~~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~~~ 126 (214)
.+ ....|-...+.- .-+-+++||+|..+..+ |+.+...
T Consensus 389 ~lk~l~s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~D-L~eL~~i 440 (603)
T PLN02718 389 LLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRD-LSRLWSL 440 (603)
T ss_pred hhhhccccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCC-HHHHhcC
Confidence 00 011222222222 35789999999988776 6666553
No 286
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=23.14 E-value=1e+02 Score=20.16 Aligned_cols=36 Identities=3% Similarity=0.170 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhc
Q psy1766 32 YRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74 (214)
Q Consensus 32 ~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~ 74 (214)
.+++.++.+... .-|||..|.| +++.+.+..++..+
T Consensus 14 ~~vlkaIk~gka----kLViiA~Da~---~~~~k~i~~~c~~~ 49 (82)
T PRK13601 14 KQTLKAITNCNV----LQVYIAKDAE---EHVTKKIKELCEEK 49 (82)
T ss_pred HHHHHHHHcCCe----eEEEEeCCCC---HHHHHHHHHHHHhC
Confidence 356666654332 2555566666 57888888888876
No 287
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.68 E-value=1.1e+02 Score=15.96 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=15.4
Q ss_pred HHHHhcCCCCCccEEEEEECCCC
Q psy1766 36 QTLLSRTGQSLLHEIILVNDFSE 58 (214)
Q Consensus 36 ~sl~~q~~~~~~~eiivVdd~s~ 58 (214)
+++++|...+-.++|-|-|.|+.
T Consensus 2 ~~LL~qEDTDgn~qITIeD~GPK 24 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIEDTGPK 24 (30)
T ss_pred hhHhhccccCCCcEEEEecCCCe
Confidence 45666665555578887777764
No 288
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=22.44 E-value=1.3e+02 Score=28.17 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=36.3
Q ss_pred EEEEEeCCC---chHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHH
Q psy1766 19 VIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVET 69 (214)
Q Consensus 19 VIIp~~n~~---~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~ 69 (214)
|.|++-+.. .-....++-|+++-+||..+.-+.|.|||.. .-|...+.+
T Consensus 3 vFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s--~ltf~al~E 54 (720)
T PF03552_consen 3 VFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGS--MLTFYALME 54 (720)
T ss_pred eEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCch--HHHHHHHHH
Confidence 455554432 2456688999999999998889999999988 667665543
No 289
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.43 E-value=4.2e+02 Score=21.39 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.8
Q ss_pred CcchHHHHHhh
Q psy1766 87 REGLIRARMFG 97 (214)
Q Consensus 87 ~~G~~~a~n~g 97 (214)
+.|.+-|...+
T Consensus 205 d~Gla~An~la 215 (273)
T cd07941 205 DSGLAVANSLA 215 (273)
T ss_pred CCCcHHHHHHH
Confidence 44544444433
No 290
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=22.34 E-value=3.4e+02 Score=20.75 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHH---HHHHHHhhcCCCcEEEEEcCCCcchHHHHHhhhhh---cCC
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG---EVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKY---ATG 103 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~---~~~~~~~~~~~~~v~~i~~~~~~G~~~a~n~g~~~---a~g 103 (214)
.+.+.++....+. +++|+||-.... ....+ .++++.....+..+.++- +...+.. +.+...+. ..-
T Consensus 71 ~~~~~l~~~~~~~-----~D~vlIDT~Gr~-~~d~~~~~el~~~~~~~~~~~~~LVl-sa~~~~~-~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 71 IAREALEKFRKKG-----YDLVLIDTAGRS-PRDEELLEELKKLLEALNPDEVHLVL-SATMGQE-DLEQALAFYEAFGI 142 (196)
T ss_dssp HHHHHHHHHHHTT-----SSEEEEEE-SSS-STHHHHHHHHHHHHHHHSSSEEEEEE-EGGGGGH-HHHHHHHHHHHSST
T ss_pred HHHHHHHHHhhcC-----CCEEEEecCCcc-hhhHHHHHHHHHHhhhcCCccceEEE-ecccChH-HHHHHHHHhhcccC
Confidence 3444555543322 488888886432 23333 344444333233444443 3344433 33333332 234
Q ss_pred CEEEEEcCCCccCcCchHHHHHH
Q psy1766 104 KVLVFLDSHIEVNTHWLEPLLVP 126 (214)
Q Consensus 104 d~i~~lD~D~~~~~~~l~~l~~~ 126 (214)
+-+++.=-|..-..+.+-.++..
T Consensus 143 ~~lIlTKlDet~~~G~~l~~~~~ 165 (196)
T PF00448_consen 143 DGLILTKLDETARLGALLSLAYE 165 (196)
T ss_dssp CEEEEESTTSSSTTHHHHHHHHH
T ss_pred ceEEEEeecCCCCcccceeHHHH
Confidence 67778777766555544444433
No 291
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.29 E-value=3.4e+02 Score=22.07 Aligned_cols=65 Identities=17% Similarity=0.161 Sum_probs=40.6
Q ss_pred eEEEEEEeCCCchHHHHHHHHHHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 17 vSVIIp~~n~~~~~l~~~l~sl~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
..+|+.+++++ .|.+.-..+...+... .+++-+|=+.+ +....+..++..+. ..|.++.+...+|
T Consensus 31 ~~liLvaR~~~--kL~~la~~l~~~~~v~--v~vi~~DLs~~--~~~~~l~~~l~~~~--~~IdvLVNNAG~g 95 (265)
T COG0300 31 YNLILVARRED--KLEALAKELEDKTGVE--VEVIPADLSDP--EALERLEDELKERG--GPIDVLVNNAGFG 95 (265)
T ss_pred CEEEEEeCcHH--HHHHHHHHHHHhhCce--EEEEECcCCCh--hHHHHHHHHHHhcC--CcccEEEECCCcC
Confidence 56788888874 6766666666555322 46666666655 55666666665552 5777777655554
No 292
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.30 E-value=4.3e+02 Score=21.10 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEEC-CCCCCCChHHHHHHHHhhcCCC-cEEEEEcCCCcchHHHHHhhhhhcCCC
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVND-FSEYPSNLHGEVETFVKGLNNG-RVHLYRTSKREGLIRARMFGAKYATGK 104 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd-~s~~~d~t~~~~~~~~~~~~~~-~v~~i~~~~~~G~~~a~n~g~~~a~gd 104 (214)
+.+.+.++.+.+.. . ..|.+.|- |.-.|....++++.+.+.. +. .+.+.- -.+.|.+-|...+.-.+..+
T Consensus 141 ~~~~~~~~~~~~~G-~---d~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~~l~~H~-Hn~~GlA~AN~laAi~aGa~ 212 (263)
T cd07943 141 EELAEQAKLMESYG-A---DCVYVTDSAGAMLPDDVRERVRALREAL-DPTPVGFHG-HNNLGLAVANSLAAVEAGAT 212 (263)
T ss_pred HHHHHHHHHHHHcC-C---CEEEEcCCCCCcCHHHHHHHHHHHHHhC-CCceEEEEe-cCCcchHHHHHHHHHHhCCC
Confidence 45554444443221 1 24444444 2222233444444444443 22 233322 23556555444433334333
No 293
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.28 E-value=1.8e+02 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcCCCCCccEEEEEECCCC
Q psy1766 30 TLYRSVQTLLSRTGQSLLHEIILVNDFSE 58 (214)
Q Consensus 30 ~l~~~l~sl~~q~~~~~~~eiivVdd~s~ 58 (214)
.+.+.|..+.++. +.++++-|++.
T Consensus 81 ~~~~~L~~l~~~~-----~~~~i~Sn~~~ 104 (176)
T PF13419_consen 81 GVRELLERLKAKG-----IPLVIVSNGSR 104 (176)
T ss_dssp THHHHHHHHHHTT-----SEEEEEESSEH
T ss_pred hhhhhhhhccccc-----ceeEEeecCCc
Confidence 3444555553332 36666666554
No 294
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=21.23 E-value=3.9e+02 Score=20.56 Aligned_cols=87 Identities=13% Similarity=0.082 Sum_probs=41.3
Q ss_pred eEEEEEEeCCC-chHHHHHHHHHHhcCCCCCccEEEEE-ECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcchHHHH
Q psy1766 17 TSVIICFYNEH-PATLYRSVQTLLSRTGQSLLHEIILV-NDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRAR 94 (214)
Q Consensus 17 vSVIIp~~n~~-~~~l~~~l~sl~~q~~~~~~~eiivV-dd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G~~~a~ 94 (214)
|.||+|..+.. +..+.+.++...++.. +++.++ +...+. +...+.++++..+. ....++............
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g----~~~~~~~~~~~d~-~~q~~~i~~~i~~~--~d~Iiv~~~~~~~~~~~l 73 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELG----YEVEIVFDAQNDP-EEQIEQIEQAISQG--VDGIIVSPVDPDSLAPFL 73 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHT----CEEEEEEESTTTH-HHHHHHHHHHHHTT--ESEEEEESSSTTTTHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcC----CEEEEeCCCCCCH-HHHHHHHHHHHHhc--CCEEEecCCCHHHHHHHH
Confidence 45666666554 3444444544444422 466664 555542 34555666665553 333334322222223333
Q ss_pred HhhhhhcCCCEEEEEcCC
Q psy1766 95 MFGAKYATGKVLVFLDSH 112 (214)
Q Consensus 95 n~g~~~a~gd~i~~lD~D 112 (214)
+.+.+ .|=-|+++|.+
T Consensus 74 ~~~~~--~gIpvv~~d~~ 89 (257)
T PF13407_consen 74 EKAKA--AGIPVVTVDSD 89 (257)
T ss_dssp HHHHH--TTSEEEEESST
T ss_pred HHHhh--cCceEEEEecc
Confidence 33221 23356667766
No 295
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=21.16 E-value=1.3e+02 Score=22.54 Aligned_cols=43 Identities=16% Similarity=-0.004 Sum_probs=31.5
Q ss_pred CCCcchH----HHHHhhhhhcCCCEEEEEcCCCccCcCchHHHHHHH
Q psy1766 85 SKREGLI----RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127 (214)
Q Consensus 85 ~~~~G~~----~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~ 127 (214)
++|.|+- .-.|.-....+-+|++++|+.+.+.++.|-.|.+.+
T Consensus 117 e~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 117 EKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred cccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 4455543 334444455688999999999999999999887653
No 296
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.08 E-value=5.1e+02 Score=21.82 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhcCCCCCccEEEEEECC-CCCCCChHHHHHHHHhhcC-CCcEEEEEcCCCcchHHHHHhhhhhcCCC
Q psy1766 29 ATLYRSVQTLLSRTGQSLLHEIILVNDF-SEYPSNLHGEVETFVKGLN-NGRVHLYRTSKREGLIRARMFGAKYATGK 104 (214)
Q Consensus 29 ~~l~~~l~sl~~q~~~~~~~eiivVdd~-s~~~d~t~~~~~~~~~~~~-~~~v~~i~~~~~~G~~~a~n~g~~~a~gd 104 (214)
+.+.+.++.+.+. . . ..|.++|-. .-.|+...+.++.+.+..+ +..+.+.- -.|.|.+-|.-.++-.+..+
T Consensus 144 e~l~~~a~~~~~~-G-a--~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~-HnnlGla~ANslaAi~aGa~ 216 (337)
T PRK08195 144 EKLAEQAKLMESY-G-A--QCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHG-HNNLGLGVANSLAAVEAGAT 216 (337)
T ss_pred HHHHHHHHHHHhC-C-C--CEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEe-CCCcchHHHHHHHHHHhCCC
Confidence 6666665555432 2 2 367777663 3323445566666665541 23344433 45788776666555445445
No 297
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=20.76 E-value=4e+02 Score=20.52 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCccCcCchHHHHHHHh
Q psy1766 101 ATGKVLVFLDSHIEVNTHWLEPLLVPIA 128 (214)
Q Consensus 101 a~gd~i~~lD~D~~~~~~~l~~l~~~~~ 128 (214)
..++-++|+-++..+.++|++...+.+.
T Consensus 156 ~~~~~f~~vASE~~i~~ewi~~a~e~~~ 183 (188)
T PF09886_consen 156 YEGNSFAFVASEETIKDEWIEEAKEMIE 183 (188)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999987766653
No 298
>KOG1478|consensus
Probab=20.68 E-value=1.6e+02 Score=24.11 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=38.8
Q ss_pred CCCCceEEEEEEeCCCchHHHHHHHHHHhcCCC-CCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEc
Q psy1766 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQ-SLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRT 84 (214)
Q Consensus 12 ~~~p~vSVIIp~~n~~~~~l~~~l~sl~~q~~~-~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~ 84 (214)
++.-.+++++.++|.+ ..++.+..+.+-.+. ....+++.||=..- .......+++.+++ +++.++..
T Consensus 28 De~~~ltl~ltcR~~~--kae~vc~~lk~f~p~~~i~~~yvlvD~sNm--~Sv~~A~~di~~rf--~~ld~iyl 95 (341)
T KOG1478|consen 28 DENVRLTLCLTCRNMS--KAEAVCAALKAFHPKSTIEVTYVLVDVSNM--QSVFRASKDIKQRF--QRLDYIYL 95 (341)
T ss_pred CCceeEEEEEEeCChh--HHHHHHHHHHHhCCCceeEEEEEEEehhhH--HHHHHHHHHHHHHh--hhccEEEE
Confidence 4445689999999885 555555665544332 22256666665433 34445556666676 55555554
No 299
>KOG3917|consensus
Probab=20.53 E-value=1.6e+02 Score=23.54 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCceEEEEEEeCCCchHHHHHHHH----HHhcCCCCCccEEEEEECCCCCCCChHHHHHHHHhhcCCCcEEEEEcCCCcc
Q psy1766 14 LPSTSVIICFYNEHPATLYRSVQT----LLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGRVHLYRTSKREG 89 (214)
Q Consensus 14 ~p~vSVIIp~~n~~~~~l~~~l~s----l~~q~~~~~~~eiivVdd~s~~~d~t~~~~~~~~~~~~~~~v~~i~~~~~~G 89 (214)
.-++.|++|...+- +.|.+.+-. +.+|.... .|+|++.-.. -++.
T Consensus 73 ~HklavlVPfRdRf-EELl~FvPHM~~FL~rq~v~H---HI~vlNQvD~---------------------------fRFN 121 (310)
T KOG3917|consen 73 YHKLAVLVPFRDRF-EELLEFVPHMSKFLHRQNVSH---HILVLNQVDP---------------------------FRFN 121 (310)
T ss_pred ceeEEEEechHHHH-HHHHHhhHHHHHHHhhcCcce---EEEEeeccCc---------------------------ceec
Confidence 34789999998776 555554332 22344332 4554433211 1233
Q ss_pred hHHHHHhhhhhcC--CCEEEEEcCCCcc
Q psy1766 90 LIRARMFGAKYAT--GKVLVFLDSHIEV 115 (214)
Q Consensus 90 ~~~a~n~g~~~a~--gd~i~~lD~D~~~ 115 (214)
.+.-.|.|+..|. .||++.-|.|..+
T Consensus 122 RAsLINVGf~eas~~~DYiaMhDVDLLP 149 (310)
T KOG3917|consen 122 RASLINVGFNEASRLCDYIAMHDVDLLP 149 (310)
T ss_pred hhhheecchhhhcchhceeeeccccccc
Confidence 4566777777663 7999999999875
Done!