RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1766
(214 letters)
>gnl|CDD|133004 cd02510, pp-GalNAc-T, pp-GalNAc-T initiates the formation of
mucin-type O-linked glycans. UDP-GalNAc: polypeptide
alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T)
initiate the formation of mucin-type, O-linked glycans
by catalyzing the transfer of
alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to
hydroxyl groups of Ser or Thr residues of core proteins
to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These
enzymes are type II membrane proteins with a GT-A type
catalytic domain and a lectin domain located on the
lumen side of the Golgi apparatus. In human, there are
15 isozymes of pp-GalNAc-Ts, representing the largest of
all glycosyltransferase families. Each isozyme has
unique but partially redundant substrate specificity for
glycosylation sites on acceptor proteins.
Length = 299
Score = 218 bits (558), Expect = 3e-71
Identities = 93/179 (51%), Positives = 117/179 (65%), Gaps = 6/179 (3%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
SVII F+NE +TL R+V ++++RT LL EIILV+DFS+ P L +E + K
Sbjct: 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKP-ELKLLLEEYYKKYL-P 58
Query: 78 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
+V + R KREGLIRAR+ GA+ ATG VLVFLDSH EVN WLEPLL IAE TV P
Sbjct: 59 KVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCP 118
Query: 138 IIDIINADTFQY-TSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLPLQYTSSALVRGG 195
IID+I+ADTF+Y SS RGGF+W LHFKW LP+ + P++ S + GG
Sbjct: 119 IIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRESPTAPIR---SPTMAGG 174
>gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse
family, transferring sugar from UDP-glucose,
UDP-N-acetyl- galactosamine, GDP-mannose or
CDP-abequose, to a range of substrates including
cellulose, dolichol phosphate and teichoic acids.
Length = 168
Score = 95.6 bits (238), Expect = 6e-25
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
SVII YNE L ++++LL++T ++ EII+V+D S E + K N+
Sbjct: 1 SVIIPTYNE-EKYLEETLESLLNQTYKNF--EIIVVDDGS--TDGTVEIAEEYAK--NDP 53
Query: 78 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
RV + R + G AR G K ATG + FLD+ EV WLE L+ + + + +
Sbjct: 54 RVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNGADIVIG 113
Query: 138 IIDIINADTFQYT 150
+IN +T Y
Sbjct: 114 SRVVINGETRLYG 126
>gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A)
includes diverse families of glycosyl transferases with
a common GT-A type structural fold.
Glycosyltransferases (GTs) are enzymes that synthesize
oligosaccharides, polysaccharides, and glycoconjugates
by transferring the sugar moiety from an activated
nucleotide-sugar donor to an acceptor molecule, which
may be a growing oligosaccharide, a lipid, or a protein.
Based on the stereochemistry of the donor and acceptor
molecules, GTs are classified as either retaining or
inverting enzymes. To date, all GT structures adopt one
of two possible folds, termed GT-A fold and GT-B fold.
This hierarchy includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. The majority of the proteins in this
superfamily are Glycosyltransferase family 2 (GT-2)
proteins. But it also includes families GT-43, GT-6,
GT-8, GT13 and GT-7; which are evolutionarily related to
GT-2 and share structure similarities.
Length = 156
Score = 61.8 bits (150), Expect = 3e-12
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
VII YNE L R +++LL++T + E+I+V+D S + +E + K + R
Sbjct: 1 VIIPAYNE-EPYLERCLESLLAQTYPNF--EVIVVDDGSTDGTLE--ILEEYAK--KDPR 53
Query: 79 VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 132
V + +GL AR G K A G+ ++FLD+ + WLE L+ +
Sbjct: 54 VIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLADPE 107
>gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall
biogenesis [Cell envelope biogenesis, outer membrane].
Length = 291
Score = 58.2 bits (139), Expect = 3e-10
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 12/130 (9%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
SV+I YNE L ++++LL++T + EII+V+D S + + G +
Sbjct: 6 SVVIPTYNE-EEYLPEALESLLNQTYKDF--EIIVVDDGSTDGTTE--IAIEY--GAKDV 58
Query: 78 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 137
RV + GL AR G +YA G +VFLD+ P L+P+
Sbjct: 59 RVIRLINERNGGLGAARNAGLEYARGDYIVFLDADD-----QHPPELIPLVAAGGDGDYI 113
Query: 138 IIDIINADTF 147
D +
Sbjct: 114 ARLDDRDDIW 123
>gnl|CDD|234419 TIGR03965, mycofact_glyco, mycofactocin system glycosyltransferase.
Members of this protein family are putative
glycosyltransferases, members of pfam00535 (glycosyl
transferase family 2). Members appear mostly in the
Actinobacteria, where they appear to be part of a system
for converting a precursor peptide (TIGR03969) into a
novel redox carrier designated mycofactocin. A radical
SAM enzyme, TIGR03962, is a proposed to be a key
maturase for mycofactocin.
Length = 467
Score = 58.2 bits (141), Expect = 3e-10
Identities = 53/207 (25%), Positives = 83/207 (40%), Gaps = 38/207 (18%)
Query: 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETF 70
+ PS +V++ N PA L R + LL+ E+I+V+D SE P V T
Sbjct: 70 LPSPPSVTVVVPVRN-RPAGLARLLAALLALDYPRDRLEVIVVDDGSEDP------VPTR 122
Query: 71 VKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE- 129
V + R +R+G AR GA+ A + + F DS + WL LL +
Sbjct: 123 AARGARLPVRVIRHPRRQGPAAARNAGARAARTEFVAFTDSDVVPRPGWLRALLAHFDDP 182
Query: 130 RTNTVTVPIIDIINADT----FQYTSSALVRGGFNWGLHFKWENLPK---VKTSSNPSYL 182
V ++ + DT ++ S+L G P+ V+ SY+
Sbjct: 183 GVALVAPRVVALPAEDTRLARYEAVRSSLDLG-------------PEEAVVRPRGPVSYV 229
Query: 183 PLQYTSSALVR-------GGFNWGLHF 202
P +++ LVR GGF+ L
Sbjct: 230 P---SAALLVRRRALLEVGGFDERLEV 253
>gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell
wall biogenesis [Cell envelope biogenesis, outer
membrane].
Length = 439
Score = 56.9 bits (137), Expect = 1e-09
Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 4/154 (2%)
Query: 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG 73
LP SVII YNE P L ++++LLS+ +E+I+V+D S + +E
Sbjct: 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGST--DETYEILEELGAE 108
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 133
+Y K G A G K A G V+V LD+ L L+ P +
Sbjct: 109 YGPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG 168
Query: 134 VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKW 167
V I N + + +F+
Sbjct: 169 AVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRL 202
>gnl|CDD|224137 COG1216, COG1216, Predicted glycosyltransferases [General function
prediction only].
Length = 305
Score = 45.2 bits (107), Expect = 7e-06
Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 18/173 (10%)
Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74
P S+II YN L + +L ++T I++V++ S +K
Sbjct: 3 PKISIIIVTYN-RGEDLVECLASLAAQTYPD--DVIVVVDNGS------TDGSLEALKAR 53
Query: 75 NNGRVHLYRTSKREGLIRARMFGAKYATGKV---LVFLDSHIEVNTHWLEPLLVPIAE-R 130
V L + G G KYA K ++ L+ V LE LL E
Sbjct: 54 FFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDP 113
Query: 131 TNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKVKTSSNPSYLP 183
V P+I + + RGG + GL W P ++ + + S
Sbjct: 114 AAGVVGPLIRN-----YDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYL 161
>gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member
of the Glycosyltransferase 2 superfamily. DPM1 is the
catalytic subunit of eukaryotic dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. In higher eukaryotes,the enzyme has three
subunits, DPM1, DPM2 and DPM3. DPM is synthesized from
dolichol phosphate and GDP-Man on the cytosolic surface
of the ER membrane by DPM synthase and then is flipped
onto the luminal side and used as a donor substrate. In
lower eukaryotes, such as Saccharomyces cerevisiae and
Trypanosoma brucei, DPM synthase consists of a single
component (Dpm1p and TbDpm1, respectively) that
possesses one predicted transmembrane region near the C
terminus for anchoring to the ER membrane. In contrast,
the Dpm1 homologues of higher eukaryotes, namely fission
yeast, fungi, and animals, have no transmembrane region,
suggesting the existence of adapter molecules for
membrane anchoring. This family also includes bacteria
and archaea DPM1_like enzymes. However, the enzyme
structure and mechanism of function are not well
understood. The UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate. This protein family belongs to
Glycosyltransferase 2 superfamily.
Length = 185
Score = 42.6 bits (101), Expect = 4e-05
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--NN 76
V+I YNE + V+ LL+ + +EII+V+D S + E+ + L
Sbjct: 1 VVIPAYNE-EENIPELVERLLAVLEEGYDYEIIVVDDGSTDGT---AEI---ARELAARV 53
Query: 77 GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
RV + R S+ G A G K A G ++V +D+
Sbjct: 54 PRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDA 88
>gnl|CDD|133056 cd06434, GT2_HAS, Hyaluronan synthases catalyze polymerization of
hyaluronan. Hyaluronan synthases (HASs) are
bi-functional glycosyltransferases that catalyze
polymerization of hyaluronan. HASs transfer both GlcUA
and GlcNAc in beta-(1,3) and beta-(1,4) linkages,
respectively to the hyaluronan chain using UDP-GlcNAc
and UDP-GlcUA as substrates. HA is made as a free
glycan, not attached to a protein or lipid. HASs do not
need a primer for HA synthesis; they initiate HA
biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA,
and Mg2+. Hyaluronan (HA) is a linear
heteropolysaccharide composed of (1-3)-linked
beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can
be found in vertebrates and a few microbes and is
typically on the cell surface or in the extracellular
space, but is also found inside mammalian cells.
Hyaluronan has several physiochemical and biological
functions such as space filling, lubrication, and
providing a hydrated matrix through which cells can
migrate.
Length = 235
Score = 40.7 bits (96), Expect = 2e-04
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 18/102 (17%)
Query: 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS--EYPSNLHGEVETFVKG 73
+VII Y+E P ++++L + EII+V D Y S L V
Sbjct: 1 DVTVIIPVYDEDPDVFRECLRSILRQKP----LEIIVVTDGDDEPYLSILSQTV------ 50
Query: 74 LNNGRVHLY--RTSKREGLIRARMFGAKYATGKVLVFLDSHI 113
G + KR L G ++ T ++V LDS
Sbjct: 51 KYGGIFVITVPHPGKRRALAE----GIRHVTTDIVVLLDSDT 88
>gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 229
Score = 40.3 bits (95), Expect = 2e-04
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS-----EYPSNLHGEVETFVKG 73
V+I NE L R +Q+L + E+ILV+D S + + +K
Sbjct: 1 VVIAARNE-AENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKI 59
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 133
LNN RV + + K+ L A K A G +V D+ V ++WL + I +
Sbjct: 60 LNNSRVSI--SGKKNALTTA----IKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113
>gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2
of unknown function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 166
Score = 38.7 bits (91), Expect = 5e-04
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 10/112 (8%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
+II YN L + +LL++T E+I+V++ S S VE +
Sbjct: 1 IIIVNYN-SLEYLKACLDSLLAQTYPD--FEVIVVDNASTDGS-----VELLRE--LFPE 50
Query: 79 VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER 130
V L R + G G + A G ++ L+ V L LL +
Sbjct: 51 VRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQD 102
>gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked
glycosylation. UDP-glucose:dolichyl-phosphate
glucosyltransferase (DPG_synthase) is a
transmembrane-bound enzyme of the endoplasmic reticulum
involved in protein N-linked glycosylation. This enzyme
catalyzes the transfer of glucose from UDP-glucose to
dolichyl phosphate.
Length = 211
Score = 38.7 bits (91), Expect = 8e-04
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 19 VIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEV-ETFVKGL 74
V+I YNE P TL +V+ L R S +EII+V+D S + EV +
Sbjct: 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFS--YEIIVVDDGS---KDGTAEVARKLARK- 54
Query: 75 NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 110
N + + K G A G A G ++F D
Sbjct: 55 NPALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 37.1 bits (87), Expect = 0.003
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 19 VIICFYNEHPA--TLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETF--VKGL 74
+++ YNE LY ++ +L G +EII V+D S T ++ L
Sbjct: 1 IVVPVYNEEENLPELYERLKAVLESLGYD--YEIIFVDDGS--TDR------TLEILREL 50
Query: 75 --NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
+ RV + R S+ G A + G +A G ++ +D+
Sbjct: 51 AARDPRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 36.4 bits (85), Expect = 0.006
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRT-GQSLLHEIILVNDFSEYPSNLHGEVET 69
P+ LP+ ++II YNE A + ++ LL+ + L EII+V+D S +
Sbjct: 25 PAYLPTVTIIIPAYNEE-AVIEAKLENLLALDYPRDRL-EIIVVSDGSTDGTAE--IARE 80
Query: 70 FVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHW 119
+ V L R +R G A ATG+++VF D N
Sbjct: 81 YAD----KGVKLLRFPERRGKAAALNRALALATGEIVVFTD----ANALL 122
>gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase
family-2 subfamily with unknown function.
Glycosyltransferase family 2 (GT-2) subfamily of unknown
function. GT-2 includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. Glycosyltransferases have been
classified into more than 90 distinct sequence based
families.
Length = 221
Score = 33.3 bits (77), Expect = 0.062
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 28/102 (27%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV----NDFSEYPSNLHGEVETFVKG 73
S+II NE L R + +L EII+V D + + G
Sbjct: 2 SIIIPTLNEA-ENLPRLLASLRRLNPLP--LEIIVVDGGSTDGTVAIARSAG-------- 50
Query: 74 LNNGRVHLYRTSKREGLIRAR-M-FGAKYATGKVLVFL--DS 111
V + + K G RAR M GA A G L+FL D+
Sbjct: 51 -----VVVISSPK--G--RARQMNAGAAAARGDWLLFLHADT 83
>gnl|CDD|220577 pfam10111, Glyco_tranf_2_2, Glycosyltransferase like family 2.
Members of this family of prokaryotic proteins include
putative glucosyltransferase, which are involved in
bacterial capsule biosynthesis.
Length = 278
Score = 32.4 bits (74), Expect = 0.14
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 18 SVIICFYN-EHPATLYRSVQTLLSRTGQSLL---HEIILV--NDFSEYPSNLHGEVETFV 71
SVII Y + + +Q+ L+R L EII+V + + L +
Sbjct: 1 SVIIPVYLSLRTRDILKRLQSCLNRLSYFLSDPDVEIIVVDGDSPLSFAKELKKIIAKNG 60
Query: 72 KGL---NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 110
+ L+ +K AR GA+Y++ + FLD
Sbjct: 61 AINYISHKTHKDLFSPAK------ARNRGAEYSSSDFIFFLD 96
>gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar
to eukaryotic DPM1. Proteins similar to eukaryotic
DPM1, including enzymes from bacteria and archaea; DPM1
is the catalytic subunit of eukaryotic
dolichol-phosphate mannose (DPM) synthase. DPM synthase
is required for synthesis of the
glycosylphosphatidylinositol (GPI) anchor, N-glycan
precursor, protein O-mannose, and C-mannose. In higher
eukaryotes,the enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. In lower eukaryotes, such
as Saccharomyces cerevisiae and Trypanosoma brucei, DPM
synthase consists of a single component (Dpm1p and
TbDpm1, respectively) that possesses one predicted
transmembrane region near the C terminus for anchoring
to the ER membrane. In contrast, the Dpm1 homologues of
higher eukaryotes, namely fission yeast, fungi, and
animals, have no transmembrane region, suggesting the
existence of adapter molecules for membrane anchoring.
This family also includes bacteria and archaea DPM1_like
enzymes. However, the enzyme structure and mechanism of
function are not well understood. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 224
Score = 32.1 bits (74), Expect = 0.15
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 19 VIICFYNEH---PATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLN 75
+II YNE P + R L + + +EII+V+D S P V K
Sbjct: 1 IIIPTYNERENIPELIER-----LDAALKGIDYEIIVVDDNS--PDGTAEIVRELAK--E 51
Query: 76 NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD---SH 112
RV L + GL A + G K A G V+V +D SH
Sbjct: 52 YPRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSH 91
>gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in
exopolysaccharide amylovora biosynthesis. AmsE is a
glycosyltransferase involved in exopolysaccharide
amylovora biosynthesis in Erwinia amylovora. Amylovara
is one of the three exopolysaccharide produced by E.
amylovora. Amylovara-deficient mutants are
non-pathogenic. It is a subfamily of Glycosyltransferase
Family GT2, which includes diverse families of
glycosyltransferases with a common GT-A type structural
fold, which has two tightly associated beta/alpha/beta
domains that tend to form a continuous central sheet of
at least eight beta-strands. These are enzymes that
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 201
Score = 31.5 bits (72), Expect = 0.22
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 18 SVIICFY-NEHPATLYRSVQTLLSRTGQSLL-HEIILVNDFSEYPSNLHGEVETFVKGLN 75
SV++ Y E P L +++++L Q+L E++LV D +L+ +E F + L
Sbjct: 1 SVLMSVYIKEKPEFLREALESILK---QTLPPDEVVLVKD-GPVTQSLNEVLEEFKRKLP 56
Query: 76 NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
+ + K GL +A G K+ T + +D+
Sbjct: 57 ---LKVVPLEKNRGLGKALNEGLKHCTYDWVARMDT 89
>gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2,
rSAM/selenodomain-associated. This enzyme may transfer
a nucleotide, or it sugar moiety, as part of a
biosynthetic pathway. Other proposed members of the
pathway include another transferase (TIGR04282), a
phosphoesterase, and a radical SAM enzyme (TIGR04167)
whose C-terminal domain (pfam12345) frequently contains
a selenocysteine [Unknown function, Enzymes of unknown
specificity].
Length = 220
Score = 30.9 bits (71), Expect = 0.33
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 21/98 (21%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNG 77
S+II NE ATL + L + G E+I+V+ G + V+ +
Sbjct: 2 SIIIPVLNEA-ATLPELLADLQALPGD---AEVIVVDG---------GSTDGTVEIARSL 48
Query: 78 RVHLYRTSKREGLIRAR-M-FGAKYATGKVLVFL--DS 111
+ + K G RAR M GA A G +L+FL D+
Sbjct: 49 GAKVIHSPK--G--RARQMNAGAALAKGDILLFLHADT 82
>gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional.
Length = 328
Score = 30.0 bits (68), Expect = 0.81
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 12 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN--LHGEVET 69
++ P S+II YN +++L+++T +L EII+VND S S E
Sbjct: 3 NSTPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNSVEIAKHYAEN 59
Query: 70 FVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 110
+ V L G+ AR G ATGK + F D
Sbjct: 60 Y------PHVRLL-HQANAGVSVARNTGLAVATGKYVAFPD 93
>gnl|CDD|133027 cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins
are required for O-antigen biosynthesis. The rfbC gene
encodes a predicted protein of 1,276 amino acids, which
is required for O-antigen biosynthesis in Myxococcus
xanthus. It is a subfamily of Glycosyltransferase Family
GT2, which includes diverse families of glycosyl
transferases with a common GT-A type structural fold,
which has two tightly associated beta/alpha/beta domains
that tend to form a continuous central sheet of at least
eight beta-strands. These are enzymes that catalyze the
transfer of sugar moieties from activated donor
molecules to specific acceptor molecules, forming
glycosidic bonds.
Length = 202
Score = 29.1 bits (66), Expect = 1.2
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEYPSNLHGEVETFVK- 72
P S+++ YN L +++++ + Q+ + E+ + +D S P EV+ +K
Sbjct: 1 PLISIVMPVYNTPEKYLREAIESVRA---QTYPNWELCIADDASTDP-----EVKRVLKK 52
Query: 73 -GLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
+ R+ + + G+ A + ATG+ + LD
Sbjct: 53 YAAQDPRIKVVFREENGGISAATNSALELATGEFVALLDH 92
>gnl|CDD|234666 PRK00147, queA, S-adenosylmethionine:tRNA
ribosyltransferase-isomerase; Provisional.
Length = 342
Score = 28.9 bits (66), Expect = 1.8
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 12/37 (32%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATG-KVLVFL 109
N+ RV I AR+FG K TG K+ V L
Sbjct: 58 FNDTRV-----------IPARLFGRKKETGGKIEVLL 83
>gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the
biosynthesis of succinoglycan. Succinoglycan
Biosynthesis Protein ExoA catalyzes the formation of a
beta-1,3 linkage of the second sugar (glucose) of the
succinoglycan with the galactose on the lipid carrie.
Succinoglycan is an acidic exopolysaccharide that is
important for invasion of the nodules. Succinoglycan is
a high-molecular-weight polymer composed of repeating
octasaccharide units. These units are synthesized on
membrane-bound isoprenoid lipid carriers, beginning with
galactose followed by seven glucose molecules, and
modified by the addition of acetate, succinate, and
pyruvate. ExoA is a membrane protein with a
transmembrance domain at c-terminus.
Length = 249
Score = 28.7 bits (65), Expect = 1.8
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL--N 75
S+II NE + +++LL+++ L EII+V+ S V+
Sbjct: 3 SIIIPVRNEE-KYIEELLESLLNQSYPKDLIEIIVVDGGS------TDGTREIVQEYAAK 55
Query: 76 NGRVHLYRTSKREGLIR--ARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 133
+ R+ L I+ G + + G +++ +D+H ++ LV +RT
Sbjct: 56 DPRIRLI---DNPKRIQSAGLNIGIRNSRGDIIIRVDAHAVYPKDYILE-LVEALKRTGA 111
Query: 134 VTV 136
V
Sbjct: 112 DNV 114
>gnl|CDD|185547 PTZ00304, PTZ00304, NADH dehydrogenase [ubiquinone] flavoprotein 1;
Provisional.
Length = 461
Score = 28.6 bits (64), Expect = 2.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 156 RGG--FNWGLHFKWENLPKVKTSSNPSYL 182
RGG F GL KW +PKVK PSYL
Sbjct: 75 RGGAGFPSGL--KWSFMPKVKPDGRPSYL 101
>gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC.
Members of this family are NodC, an
N-acetylglucosaminyltransferase involved in the
production of nodulation factors through which rhizobia
establish symbioses with leguminous plants.
Length = 395
Score = 28.5 bits (64), Expect = 2.8
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFV 71
LPS VI+ +NE P TL + ++ ++ L + +V+D S L + +
Sbjct: 47 LPSVDVIVPCFNEDPRTLSECLASIAAQDYAGKLR-VYVVDDGSTNRDALVPVHDAYA 103
>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated.
Length = 566
Score = 28.6 bits (64), Expect = 2.9
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 113 IEVNTHW-LEP---LLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWE 168
I V +W L P ++VP A RT + ++D+I AD RG W L W
Sbjct: 206 ISVRGNWPLTPTMDVVVPYA-RTMADLLEVLDVIVAD------DPDTRGDL-WRLQ-PWV 256
Query: 169 NLPKVKTSSNPSYLPLQYTSSAL 191
+PK SYL L + AL
Sbjct: 257 PIPKASEVRPASYLALAAGADAL 279
>gnl|CDD|147980 pfam06109, HlyE, Haemolysin E (HlyE). This family consists of
several enterobacterial haemolysin (HlyE)
proteins.Hemolysin E (HlyE) is a novel pore-forming
toxin of Escherichia coli, Salmonella typhi, and
Shigella flexneri. HlyE is unrelated to the well
characterized pore-forming E. coli hemolysins of the RTX
family, haemolysin A (HlyA), and the enterohaemolysin
encoded by the plasmid borne ehxA gene of E. coli 0157.
However, it is evident that expression of HlyE in the
absence of the RTX toxins is sufficient to give a
hemolytic phenotype in E. coli. HlyE is a protein of 34
kDa that is expressed during anaerobic growth of E.
coli. Anaerobic expression is controlled by the
transcription factor, FNR, such that, upon ingestion and
entry into the anaerobic mammalian intestine, HlyE is
produced and may then contribute to the colonisation of
the host.
Length = 299
Score = 28.1 bits (62), Expect = 3.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK 72
E +L+ S Q+ + +G+ + + L NDF E G+V+ K
Sbjct: 125 EEAQKSLHASSQSFNNASGKLIALDSQLANDFDEKSDYFQGQVDKIRK 172
>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta
C-terminal domain. L-lactate dehydrogenases are
metabolic enzymes which catalyze the conversion of
L-lactate to pyruvate, the last step in anaerobic
glycolysis. L-2-hydroxyisocaproate dehydrogenases are
also members of the family. Malate dehydrogenases
catalyze the interconversion of malate to oxaloacetate.
The enzyme participates in the citric acid cycle.
L-lactate dehydrogenase is also found as a lens
crystallin in bird and crocodile eyes.
Length = 173
Score = 27.7 bits (62), Expect = 3.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 16 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSE 58
S V + Y P +Y SV +L + G + EI+ +NDF
Sbjct: 110 SVGVYLDGYYGSPDDIYFSVPVVLGKDGVEKVVEILPLNDFER 152
>gnl|CDD|107302 cd06307, PBP1_uncharacterized_sugar_binding, Periplasmic
sugar-binding domain of uncharacterized transport
systems. Periplasmic sugar-binding domain of
uncharacterized transport systems that share homology
with a family of pentose/hexose sugar-binding proteins
of the type I periplasmic binding protein (PBP1)
superfamily. The members of this group are predicted to
be involved in the transport of sugar-containing
molecules across cellular and organellar membranes.
Length = 275
Score = 27.9 bits (63), Expect = 3.8
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 20/64 (31%)
Query: 52 LVNDFSEYPSNLHGEVETFVKGLNN---GRVHLYRTSKREGLIRARMFGAKYATGKVLVF 108
LV+D P +V G++N GR + LI R G GKV V
Sbjct: 89 LVSDLPGSPR------AGYV-GIDNRAAGRTAAW-------LI-GRFLGR--RPGKVAVL 131
Query: 109 LDSH 112
SH
Sbjct: 132 AGSH 135
>gnl|CDD|217096 pfam02547, Queuosine_synth, Queuosine biosynthesis protein.
Queuosine (Q) biosynthesis protein, or
S-adenosylmethionine:tRNA -ribosyltransferase-isomerase,
is required for the synthesis of the queuosine precursor
(oQ). It catalyzes the transfer and isomerisation of the
ribose moiety from AdoMet to the 7-aminomethyl group of
7-deazaguanine (preQ1-tRNA) to form epoxyqueuosine
(oQ-tRNA). Q is a hypermodified nucleoside usually found
at the first position of the anticodon of asparagine,
aspartate, histidine, and tyrosine tRNAs.
Length = 341
Score = 27.8 bits (63), Expect = 4.7
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120
N+ RV I AR+FG K + GKV V L ++ + WL
Sbjct: 57 FNDTRV-----------IPARLFGRKESGGKVEVLLLRPLD-DGRWL 91
>gnl|CDD|183107 PRK11376, hlyE, hemolysin E; Provisional.
Length = 303
Score = 27.3 bits (60), Expect = 5.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 25 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVK 72
NE +L S Q+ + +G+ L + L NDFSE S +V+ K
Sbjct: 128 NEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRK 175
>gnl|CDD|232830 TIGR00113, queA, S-adenosylmethionine:tRNA
ribosyltransferase-isomerase. This model describes the
enzyme for S-adenosylmethionine:tRNA
ribosyltransferase-isomerase (QueA). QueA synthesizes
Queuosine which is usually in the first position of the
anticodon of tRNAs specific for asparagine, aspartate,
histidine, and tyrosine [Protein synthesis, tRNA and
rRNA base modification].
Length = 344
Score = 27.4 bits (61), Expect = 5.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120
LNN +V I AR+FG K + GKV V L ++ N WL
Sbjct: 57 LNNTKV-----------IPARLFGRKESGGKVEVLLLRMLDENR-WL 91
>gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase;
Provisional.
Length = 333
Score = 27.4 bits (61), Expect = 6.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 18 SVIICFYNEH---PATLYRSVQTLLSRTGQ--SLLHEIILVNDFS 57
S++I YNE P L +++ L SR+ + +EII+VND S
Sbjct: 73 SIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGS 117
>gnl|CDD|224387 COG1470, COG1470, Predicted membrane protein [Function unknown].
Length = 513
Score = 27.4 bits (61), Expect = 6.1
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 9 TFPSTLPSTSVII-----CFYNEHPATL---YRSVQTLLSRTGQS---LLHEIILVNDFS 57
P L + I C + R + +L R L EI DF
Sbjct: 101 RVPELLEAGDSTISIDLKCPKGWNRRFYDKGVREFEIVLDRGTMKQLNLYVEIPSNADFG 160
Query: 58 EYPSNLHGEVET----FVKGLNNG 77
+ L+ VET V G
Sbjct: 161 YHEVTLNAFVETEFRVNVYKTYKG 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,738,738
Number of extensions: 978074
Number of successful extensions: 816
Number of sequences better than 10.0: 1
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 48
Length of query: 214
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 121
Effective length of database: 6,812,680
Effective search space: 824334280
Effective search space used: 824334280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)