RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1766
(214 letters)
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 194 bits (493), Expect = 4e-60
Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++ EI+LV+D SE L
Sbjct: 19 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERD-FLK 77
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+E++VK L VH+ R +R GLIRAR+ GA + G+V+ FLD+H E WLEPLL
Sbjct: 78 RPLESYVKKLK-VPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 136
Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLPK 172
I TV PIID+I+ DTF+Y S + GGFNW L+F+W +P+
Sbjct: 137 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQ 185
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 191 bits (487), Expect = 2e-58
Identities = 81/223 (36%), Positives = 122/223 (54%), Gaps = 16/223 (7%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C ++ + TLP+TS+II F+NE ++L R+V ++L+R+ L+ EI+LV+DFS+ L
Sbjct: 102 CNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREH-LK 160
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+E ++ + V + RT KREGLIR RM GA ATG V+ FLDSH E N +WL PLL
Sbjct: 161 KPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218
Query: 125 VPIAERTNTVTVPIIDIINADTFQY--TSSALVRGGFNWGLHFKWENLPKVKTSSNPSY- 181
IA T+ P+ID+I+ D F+Y + +RG F+W +++K +P ++PS
Sbjct: 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDP 278
Query: 182 LPLQYTSSALV---------RGGFNWGLHFK-WENLPKGTHTW 214
+ L GG++ GL E W
Sbjct: 279 FESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVW 321
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 185 bits (470), Expect = 2e-56
Identities = 75/168 (44%), Positives = 104/168 (61%), Gaps = 8/168 (4%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C + + LP+TSV+I F+NE + L R+V ++L ++ L+ EIILV+D+S P +
Sbjct: 56 CQRKQWRVDLPATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPED-G 114
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+ K V + R +REGL+R+R+ GA A KVL FLDSH E N HWLEPLL
Sbjct: 115 ALLGKIEK------VRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLL 168
Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLP 171
+AE V PIID+IN D FQY +SA ++GGF+W L FKW+ +
Sbjct: 169 ERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMT 216
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 58.5 bits (141), Expect = 3e-10
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 7/129 (5%)
Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74
++I+ +YN + ++++ + Q +I+VND S ++ +K
Sbjct: 2 NKLTIIVTYYN-AEEYITGCLESIKQQRTQDF--NLIIVNDGS--TDQSKKLMDEAIKDY 56
Query: 75 NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTV 134
+ + + G AR + +FLD+ E+ ++ + + T+ +
Sbjct: 57 DK-NIRFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAIT-FYLEKFNNTDGL 114
Query: 135 TVPIIDIIN 143
PI
Sbjct: 115 IAPIHSFTT 123
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 46.9 bits (111), Expect = 2e-06
Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 14/188 (7%)
Query: 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLS-RTGQSLLHEIILVNDFSEYPSNLHGEVET 69
+ S++I YN L ++ L + +T E+I+ +D S+ +E
Sbjct: 89 QLIIDGLSIVIPTYN-RAKILAITLACLCNQKTIYDY--EVIVADDGSK------ENIEE 139
Query: 70 FVKGL-NNGRVH-LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 127
V+ + + + + L R G + A + LD + N W++ + +
Sbjct: 140 IVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELL 199
Query: 128 AERTNTVTVPIIDIINADTFQYTSSALVRGGFNWG--LHFKWENLPKVKTSSNPSYLPLQ 185
A N + I+ Y + N + + KV+ + + +
Sbjct: 200 AVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEH 259
Query: 186 YTSSALVR 193
+ ++ +R
Sbjct: 260 FKNTDNLR 267
Score = 43.8 bits (103), Expect = 2e-05
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEY 59
+P S+ I YN + R V++ L+ Q++ E+ + +D S
Sbjct: 361 RKKEKIESATLKRVPLVSIYIPAYN-CSKYIVRCVESALN---QTITDLEVCICDDGSTD 416
Query: 60 PSNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
+ ++ N+ RV K +G+ A + G + LDS
Sbjct: 417 DT--LRILQEHYA--NHPRVRFISQ-KNKGIGSASNTAVRLCRGFYIGQLDS 463
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 45.8 bits (109), Expect = 3e-06
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 12/100 (12%)
Query: 18 SVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEYPSNLHGEVETF-----V 71
SVI+ YN + +S+ ++LS Q+ E+ +++D S + F V
Sbjct: 4 SVIMTSYN-KSDYVAKSISSILS---QTFSDFELFIMDDNSN--EETLNVIRPFLNDNRV 57
Query: 72 KGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 111
+ + + +++ + A G+ + +
Sbjct: 58 RFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATD 97
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 42.6 bits (101), Expect = 3e-05
Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 42/196 (21%)
Query: 18 SVIICFYN-EHPATLYRSVQTLLSRTGQSLLH-EIILVNDFS---------EYPSNLHGE 66
SVI+ YN E L + VQ LL+ Q+L EIIL++D S +Y +
Sbjct: 8 SVIVPIYNVE--KYLDQCVQALLA---QTLSDIEIILIDDESPDNCPKICDDYAAQ---- 58
Query: 67 VETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS--HIEVNTHWLEPLL 124
+ + K GL A G ATG+ + F DS +++ + +
Sbjct: 59 ---------YPNIKVIHK-KNAGLGMACNSGLDVATGEYVAFCDSDDYVDSDM--YM-TM 105
Query: 125 VPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFK-WENLPKVKTSSNPSYLP 183
+A++ D + + T + + G FK ++N ++ T
Sbjct: 106 YNVAQKYTC------DAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIAS 159
Query: 184 LQYTSSALVRGGFNWG 199
Y
Sbjct: 160 DPYAREERAIQVSAKV 175
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.6 bits (94), Expect = 2e-04
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 31/127 (24%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEI--------ILVNDFSEYPSNLHGEVETF 70
+ ++ + + V+ +L + L+ I ++ + E L+ + + F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 71 VKGLNNGRVHLYRTSKREGLIRAR---------MFGAKYATGK-VL---VFLDSHIEV-- 115
K N R+ Y R+ L+ R + G+ GK + V L ++
Sbjct: 127 AK-YNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQCKM 180
Query: 116 --NTHWL 120
WL
Sbjct: 181 DFKIFWL 187
Score = 36.4 bits (83), Expect = 0.005
Identities = 35/219 (15%), Positives = 67/219 (30%), Gaps = 59/219 (26%)
Query: 12 STLPSTSVIICFYNE-HPATL--YRSVQTLLSRTGQSLLHEIIL-VNDFSEYPSNLHGEV 67
S V + L S +T+L Q LL++I S++ SN+ +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 68 ETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHW-LEPL--- 123
+ L L++++ + L+ L V
Sbjct: 228 HSIQAELRR-------------LLKSKPYE------NCLLVLL---NVQNAKAWNAFNLS 265
Query: 124 ---LVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGF----------NWGLHFKWENL 170
L+ T T + D ++A T + S + L + ++L
Sbjct: 266 CKILL-----T-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDL 318
Query: 171 PKVKTSSNPSYLPLQYTSSALVRGGFNWGLHFKWENLPK 209
P+ ++NP L + + +R G W+N
Sbjct: 319 PREVLTTNPRRLSI---IAESIRDGLA-----TWDNWKH 349
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 38.9 bits (90), Expect = 6e-04
Identities = 10/111 (9%), Positives = 24/111 (21%), Gaps = 28/111 (25%)
Query: 19 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNNGR 78
+ + A R +++ E + + N G
Sbjct: 19 SVCSLVRD-QAKYDRLLESFERFGFTPDKAEFLAAD-------NREGNQFHGFSWHKQM- 69
Query: 79 VHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 129
G+ ++F +E+ + L+ I
Sbjct: 70 -------------------LPRCKGRYVIFCHEDVELVDRGYDDLVAAIEA 101
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase,
mannose, transferase, stereoselectivity; HET: FLC; 1.95A
{Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A
2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A*
2y4k_A* 2y4l_A* 2y4m_A*
Length = 397
Score = 38.2 bits (88), Expect = 0.001
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 14/121 (11%)
Query: 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS-----EYPSNLHGEVETFV 71
+ V+ F +EHP L +V+ +L + E E+
Sbjct: 2 SLVVFPFKHEHPEVLLHNVRVAA----AHPRVHEVLCIGYERDQTYEAVERAAPEISRAT 57
Query: 72 KGLNNGRVHLYRTSKREGLIRARMFGAKYA----TGKVLVFLDSHI-EVNTHWLEPLLVP 126
+ R+ + R G +Y + + F D+ I W+
Sbjct: 58 GTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEA 117
Query: 127 I 127
Sbjct: 118 A 118
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 33.9 bits (77), Expect = 0.027
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 74
+ SV++ +E T+ + ++ S L+ E+I+++ S +T ++ +
Sbjct: 48 RTISVVLPALDEED-TIGSVIDSI-SPLVDGLVDELIVLDSGST--------DDTEIRAV 97
Query: 75 NNG-RV-----HLYRTSKREGLIRARMFGAKYATGKVLVFLDS-HIEVNTHWLEPLLVPI 127
G RV L R G A + G ++VF+DS I + ++ L+ P+
Sbjct: 98 AAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPL 157
Query: 128 AERTNTVTV 136
V
Sbjct: 158 LTGDGVHLV 166
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 33.1 bits (75), Expect = 0.067
Identities = 15/164 (9%), Positives = 48/164 (29%), Gaps = 21/164 (12%)
Query: 11 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQ-SLLHEIILVNDFSEYPSNLHGEVET 69
+ +V I +N PA +++ L + ++ +I+ + +
Sbjct: 176 APGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPA- 233
Query: 70 FVKGLNNGRVHLYRTSKR-------EGLIRA-RMFGAKYATGKVLVFLDSHIEVNTHWLE 121
R+ ++ + A + + ++F+D I + +
Sbjct: 234 -AAARLGSRLSIHDQPNLGGSGGYSRVMYEALKNTDCQQ-----ILFMDDDIRLEPDSIL 287
Query: 122 PLLVPIAERTNTVTV---PIIDIINADTFQYTSSALVRGGFNWG 162
++ + + ++++ + R F W
Sbjct: 288 R-VLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWT 330
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB
family, lipid binding protein; HET: MSE EPE; 1.66A
{Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Length = 159
Score = 29.9 bits (67), Expect = 0.40
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 181 YLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW 214
LP ++ + + G N H W+++P GT ++
Sbjct: 14 KLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSF 47
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
beta-barrel, QUEA, quein queuosine, tRNA- modification;
2.88A {Bacillus subtilis}
Length = 346
Score = 28.6 bits (65), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWL 120
LNN RV + AR+FG K TG KV + L + W
Sbjct: 62 LNNTRV-----------LPARLFGTKEDTGAKVELLLLKQETGDK-WE 97
>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1
Length = 345
Score = 27.8 bits (63), Expect = 2.7
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 12/47 (25%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120
N +V I AR+ K GKV + L W
Sbjct: 60 FNESKV-----------IPARLLARKPTGGKVEILLVRERSPGL-WE 94
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct
genomics, JCSG, protein structure initiative, PSI; 2.00A
{Thermotoga maritima} SCOP: e.53.1.1
Length = 347
Score = 27.8 bits (63), Expect = 2.7
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 12/47 (25%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWL 120
LN +V I AR++ K + + L +E W
Sbjct: 70 LNVSKV-----------IPARLYARKKTGASIEILLIERLEEGI-WK 104
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD,
NADP, transferase, phosphoprotein, oxidoreductase, lipid
synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A*
2was_B
Length = 122
Score = 26.8 bits (60), Expect = 3.4
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 47 LHEIILVNDFSEYPS-NLHGEVETFVKGLNNGRVHL 81
L +I +V P+ LHG + + V +
Sbjct: 69 LKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKV 104
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory
protein, transcription; 3.00A {Enterobacteria phage T4}
Length = 115
Score = 26.7 bits (58), Expect = 3.5
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 111 SHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQ 148
S++E T +LE +P + + II+ I ++
Sbjct: 57 SYLEATTAFLEENSIPETQFAKFIPSGIIEKIQSEAID 94
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty
acid biosynthesis, lipid synthesis, transferase,
polyketides; HET: COA; 1.35A {Streptomyces coelicolor}
PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A*
Length = 143
Score = 26.4 bits (59), Expect = 4.2
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 2/42 (4%)
Query: 42 TGQSL-LHEIILVNDFSEYPS-NLHGEVETFVKGLNNGRVHL 81
L + + + P + G V L H+
Sbjct: 85 APAGLLWTDAEVWVEAGGRPRLRVTGTVAARAAELGVASWHV 126
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 26.3 bits (58), Expect = 8.3
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 114
+ +Y+ + + A ++ +ATG + I+
Sbjct: 142 QDAEVAKMYKENHALFVKTASVWTKTFATGPKEEPREVIIK 182
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,228,567
Number of extensions: 180192
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 30
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)