RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1766
(214 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 101 bits (251), Expect = 3e-26
Identities = 75/169 (44%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Query: 5 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLH 64
C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++ EI+LV+D SE L
Sbjct: 12 CKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDF-LK 70
Query: 65 GEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
+E++VK L VH+ R +R GLIRAR+ GA + G+V+ FLD+H E WLEPLL
Sbjct: 71 RPLESYVKKLKV-PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129
Query: 125 VPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLHFKWENLPK 172
I TV PIID+I+ DTF+Y S + GGFNW L+F+W +P+
Sbjct: 130 ARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQ 178
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 79.6 bits (196), Expect = 3e-18
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 24/163 (14%)
Query: 17 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS--------EYPSNLHGEVE 68
+ V+ F +EHP L +V+ + +HE++ + +
Sbjct: 1 SLVVFPFKHEHPEVLLHNVRVAAA---HPRVHEVLCIGYERDQTYEAVERAAPEISRATG 57
Query: 69 TFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPI 127
T V R+ R K +G+ A + + + + F D+ I W+
Sbjct: 58 TPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAA 117
Query: 128 AERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENL 170
Y A W + L
Sbjct: 118 DFG------------YGLVRHYFPRASTDAMITWMITRTGFAL 148
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 48.5 bits (114), Expect = 1e-07
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 14 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG 73
L S ++I+ YN L R + + LH++I+V + E
Sbjct: 2 LDSFTLIMQTYNR-TDLLLRLLNHYQA---VPSLHKVIVVWNNVGEKG-----PEELWNS 52
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 124
L + + + +R R+ ++ +D ++ L
Sbjct: 53 LGPHPIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAF 103
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 35.9 bits (81), Expect = 0.002
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 15 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS 57
P SVI+ YN+ + +S+ ++LS+T E+ +++D S
Sbjct: 1 PKVSVIMTSYNK-SDYVAKSISSILSQTFSDF--ELFIMDDNS 40
>d1fjja_ b.17.1.2 (A:) Hypothetical protein YbhB {Escherichia coli
[TaxId: 562]}
Length = 159
Score = 28.8 bits (64), Expect = 0.35
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 180 SYLPLQYTSSALVRGGFNWGLHFKWENLPKGTHTW 214
LP ++ + + G N H W+++P GT ++
Sbjct: 13 DKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSF 47
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA
{Thermotoga maritima [TaxId: 2336]}
Length = 332
Score = 26.1 bits (57), Expect = 3.3
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 11/46 (23%)
Query: 74 LNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHW 119
LN +V I AR++ K + + L +E
Sbjct: 55 LNVSKV-----------IPARLYARKKTGASIEILLIERLEEGIWK 89
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
[TaxId: 2336]}
Length = 202
Score = 25.7 bits (56), Expect = 3.5
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 136 VPIIDIINADTFQYTSSALVRGGFN 160
V ++ + + + + A+ GG +
Sbjct: 12 VAVLRANSVEEAKEKALAVFEGGVH 36
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human
(Homo sapiens), E2 T [TaxId: 9606]}
Length = 154
Score = 24.8 bits (53), Expect = 6.4
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 1 MSIICANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYP 60
+ + +P P + Y+ + + R +L + + +
Sbjct: 52 KLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSI 111
Query: 61 SNLHGEVETFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK 104
L E L ++ +K L AR + K+A K
Sbjct: 112 QLLMSEPNPD-DPLMADISSEFKYNKPAFLKNARQWTEKHARQK 154
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
562]}
Length = 213
Score = 24.9 bits (54), Expect = 8.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 136 VPIIDIINADTFQYTSSALVRGGFN 160
VP+I + + + ALV GG
Sbjct: 18 VPVIVVKKLEHAVPMAKALVAGGVR 42
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus
influenzae [TaxId: 727]}
Length = 212
Score = 24.5 bits (53), Expect = 9.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 136 VPIIDIINADTFQYTSSALVRGGFN 160
VP+I + NAD + L + G +
Sbjct: 17 VPVIALDNADDILPLADTLAKNGLS 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,887
Number of extensions: 35801
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 13
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)