BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17660
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 14 SNFQSEKSNDLRFESRFESGNLAKAVKISD-NYYELYLRTDLYTNRHMQWFYFRINNTRA 72
S+ Q EK ++ + F+SGN+ + + SD L +R DL ++H QWF+F++
Sbjct: 5 SHPQFEKGA-MQIRADFDSGNI-QVIDASDPRRIRLAIRPDL-ASQHFQWFHFKVEGMAP 61
Query: 73 NVYYRFSIVNLSKS 86
+ F++VN +S
Sbjct: 62 ATEHCFTLVNAGQS 75
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 VSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE 47
V N++ K +DL+ SRF G L + + ++ + +E
Sbjct: 371 VHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 405
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 VSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE 47
V N++ K +DL+ SRF G L + + ++ + +E
Sbjct: 366 VHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 400
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 VSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE 47
V N++ K +DL+ SRF G L + + ++ + +E
Sbjct: 366 VHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 400
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 VSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE 47
V N++ K +DL+ SRF G L + + ++ + +E
Sbjct: 366 VHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 400
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 13 VSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE 47
V N++ K +DL+ SRF G L + + ++ + +E
Sbjct: 371 VHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQFE 405
>pdb|2PC1|A Chain A, Crystal Structure Of Acetyltransferase Gnat Family
(Np_688560.1) From Streptococcus Agalactiae 2603 At 1.28
A Resolution
Length = 201
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 23/102 (22%)
Query: 30 FESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANVYYRFSIVNLSKSESL 89
E G LA + D + E+Y +Y + W + +N R ++R +I N + L
Sbjct: 77 IEDGXLATYAAVIDGHEEVY--DAIYEGK---WLH---DNHRYLTFHRIAISNQFRGRGL 128
Query: 90 YSVGMKPLMYSTKEAE---------------LNKIGWRRCGE 116
++ L+ K + LNK+G++ CG+
Sbjct: 129 AQTFLQGLIEGHKGPDFRCDTHEKNVTXQHILNKLGYQYCGK 170
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 88 SLYSVGMKPLMYSTKEAELNKIGWRRCGENITYFRN 123
++Y++G +P + E + W +NITYFRN
Sbjct: 375 AIYALGREPTFFFDPE-NFDPTRWLSKDKNITYFRN 409
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 88 SLYSVGMKPLMYSTKEAELNKIGWRRCGENITYFRN 123
++Y++G +P + E + W +NITYFRN
Sbjct: 378 AIYALGREPTFFFDPE-NFDPTRWLSKDKNITYFRN 412
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,524,829
Number of Sequences: 62578
Number of extensions: 121045
Number of successful extensions: 223
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 10
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)