Query psy17660
Match_columns 126
No_of_seqs 110 out of 434
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 19:45:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a37_A Metallo-carboxypeptidas 99.9 1.3E-24 4.4E-29 178.9 6.3 89 20-117 10-101 (388)
2 3l2n_A Peptidase M14, carboxyp 99.9 7.2E-24 2.5E-28 175.0 6.9 87 21-117 17-106 (395)
3 3k2k_A Putative carboxypeptida 99.9 1E-23 3.4E-28 174.5 6.5 88 20-117 18-108 (403)
4 1www_V Beta-NGF, protein (nerv 48.5 7.7 0.00026 26.8 1.6 37 33-70 23-59 (120)
5 1hcf_A Neurotrophin-4; transfe 46.3 10 0.00035 26.5 2.0 36 33-69 25-61 (130)
6 1b8k_A NT3, protein (neurotrop 36.6 15 0.00052 25.3 1.6 36 34-70 23-58 (119)
7 3ij2_A Beta-NGF, beta-nerve gr 24.6 36 0.0012 25.9 2.0 27 43-70 136-162 (230)
8 4f7h_A Fermitin family homolog 23.5 66 0.0023 23.4 3.2 29 84-124 56-84 (173)
9 1bnd_A BDNF, brain derived neu 21.7 38 0.0013 23.2 1.5 35 34-69 24-58 (119)
10 4bbk_A Kindlin-1, fermitin fam 19.0 72 0.0025 23.0 2.5 27 86-124 37-63 (165)
No 1
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Probab=99.90 E-value=1.3e-24 Score=178.85 Aligned_cols=89 Identities=24% Similarity=0.432 Sum_probs=76.8
Q ss_pred CCCceEEEeecCCcchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeeeccCeeEEEEEeccccccccccCCCeE---
Q psy17660 20 KSNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANVYYRFSIVNLSKSESLYSVGMKP--- 96 (126)
Q Consensus 20 ~~~~l~F~S~FeSGNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P--- 96 (126)
+++.|.|+|+||||||.+|.++++.||+|+|+||+++ +|+|||||+|+|.++++.++|+|+|+.| ++|++||+|
T Consensus 10 ~~~~l~f~s~FesGnl~~~~~~~~~~~~l~i~~D~~~-~~~qWf~F~v~~~~~~~~~~~~i~n~~~--s~y~~g~~~y~~ 86 (388)
T 4a37_A 10 EKGAMQIRADFDSGNIQVIDASDPRRIRLAIRPDLAS-QHFQWFHFKVEGMAPATEHCFTLVNAGQ--SAYSHAWSGYQA 86 (388)
T ss_dssp ----CEEECCSTTCBCEEEECSCTTSEEEECCCCTTS-SCCCCCEEEEESCCTTCCEEEEETTGGG--STTGGGGTTCCC
T ss_pred CCCCEEEeccCCCCccEEEEecCCcEEEEEECCCCCC-CcceeeEEEEecCCCCeEEEEEEEeCch--hhhhccccccce
Confidence 4677999999999999999999999999999999997 8999999999999999999999999987 899999765
Q ss_pred EEEechhhhcCCCCeEEeCCC
Q psy17660 97 LMYSTKEAELNKIGWRRCGEN 117 (126)
Q Consensus 97 ~v~s~~~~~~~~~~W~R~g~~ 117 (126)
++. ..+++|.|+++.
T Consensus 87 ~~s------~~~~~W~r~~~~ 101 (388)
T 4a37_A 87 VAS------YDGERWFRVPSQ 101 (388)
T ss_dssp EEE------SSSSSCEECCEE
T ss_pred eEe------cCCCCeEECCcE
Confidence 333 247899999854
No 2
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A, structural genomics, joint CENT structural genomics, JCSG; 2.39A {Shewanella denitrificans}
Probab=99.89 E-value=7.2e-24 Score=174.96 Aligned_cols=87 Identities=23% Similarity=0.421 Sum_probs=75.6
Q ss_pred CCceEEEeecCCcchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeeeccCeeEEEEEeccccccccccCCCeE---E
Q psy17660 21 SNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANVYYRFSIVNLSKSESLYSVGMKP---L 97 (126)
Q Consensus 21 ~~~l~F~S~FeSGNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P---~ 97 (126)
-..|.|+|+||||||.+|.++++.||+|.|+||+++ +++|||||+|+|. +++.++|+|+|+.| ++|+.||+| +
T Consensus 17 ~~~~~f~s~FesGnl~~~~~~~~~~~~L~i~~D~~~-~~~qWF~F~v~~~-~~~~~~~~i~N~~~--s~y~~g~~~y~~~ 92 (395)
T 3l2n_A 17 FQGMRISANFDGGNIETISLANPDDIQLAIRPDAGG-EFYQWFNFRFEAT-IGKTYTLNILNAGG--ASYLKGWEDYQAV 92 (395)
T ss_dssp ---CEEECCSTTCBCEEEEEEETTEEEEECCCCTTS-SCCCCCEEEEECC-TTSEEEEEETTGGG--SSCGGGGTTCCCE
T ss_pred cCCcEEeccCCCCCceEEEecCCCEEEEEECCCCCC-CCceeEEEEEEcC-CCcEEEEEEEecch--hhhhcccccccee
Confidence 467999999999999999999999999999999987 8999999999999 89999999999987 899999865 4
Q ss_pred EEechhhhcCCCCeEEeCCC
Q psy17660 98 MYSTKEAELNKIGWRRCGEN 117 (126)
Q Consensus 98 v~s~~~~~~~~~~W~R~g~~ 117 (126)
+.. .++.|.|+++.
T Consensus 93 ~s~------~~~~W~r~~~~ 106 (395)
T 3l2n_A 93 ASY------DRQTWFRLPTE 106 (395)
T ss_dssp EES------SSSSCEECCEE
T ss_pred Eee------CCCcEEECCce
Confidence 332 47899999854
No 3
>3k2k_A Putative carboxypeptidase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.49A {Burkholderia mallei atcc 23344}
Probab=99.89 E-value=1e-23 Score=174.49 Aligned_cols=88 Identities=20% Similarity=0.422 Sum_probs=78.5
Q ss_pred CCCceEEEeecCCcchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeeeccCeeEEEEEeccccccccccCCCeE---
Q psy17660 20 KSNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANVYYRFSIVNLSKSESLYSVGMKP--- 96 (126)
Q Consensus 20 ~~~~l~F~S~FeSGNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~~~~~~~~f~I~N~~k~~sly~~Gm~P--- 96 (126)
..+.|.|+|+||||||.+|.++++.||+|.|+||+++ +++|||||+|++. +++.++|+|+|+.| ++|++||+|
T Consensus 18 ~~~~l~f~s~FesGnl~~~~~~~~~~~~L~i~~D~~~-~~~qWF~F~v~~~-~~~~~~~~i~N~~~--s~y~~g~~~y~~ 93 (403)
T 3k2k_A 18 QGMTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRS-EFAQWFYFRLTGA-RGERCVMTFENAND--CAYPAGWRDYRA 93 (403)
T ss_dssp CSCCCEEECCSTTCBCEEEECSSGGGEEEECCCCTTS-SCCCCCEEEEESC-TTCCEEEEETTGGG--SSCGGGGTTCCC
T ss_pred CCCceEEeccCCCCCceEEEecCCCEEEEEECCCCCC-CCceeeEEEEecC-CCeEEEEEEcccch--hhhhcccccccc
Confidence 5789999999999999999999999999999999997 8999999999999 89999999999987 899999765
Q ss_pred EEEechhhhcCCCCeEEeCCC
Q psy17660 97 LMYSTKEAELNKIGWRRCGEN 117 (126)
Q Consensus 97 ~v~s~~~~~~~~~~W~R~g~~ 117 (126)
++. ..++.|.|+++.
T Consensus 94 ~~s------~~~~~W~r~~~~ 108 (403)
T 3k2k_A 94 VAS------YDRVNWFRVPTS 108 (403)
T ss_dssp EEE------SSSSSCEECCEE
T ss_pred eEE------eCCCCeEECCce
Confidence 333 247899999754
No 4
>1www_V Beta-NGF, protein (nerve growth factor); complex, cysteine knot, immunoglobulin like domain; 2.20A {Homo sapiens} SCOP: g.17.1.3 PDB: 1sg1_A 2ifg_E* 1sgf_B* 1btg_A 1bet_A
Probab=48.54 E-value=7.7 Score=26.77 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=28.8
Q ss_pred cchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeee
Q psy17660 33 GNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNT 70 (126)
Q Consensus 33 GNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~ 70 (126)
+|+..|..+.+.+..++-..+.+...+.|||| .++..
T Consensus 23 ~nkttA~Di~G~~VtVl~~v~~n~~~~kQyF~-ET~C~ 59 (120)
T 1www_V 23 GDKTTATDIKGKEVMVLGEVNINNSVFKQYFF-ETKCR 59 (120)
T ss_dssp CCCCEEEBTTSCEEEECSEEESSSSEEECCEE-EEEEC
T ss_pred cCCCEEEccCCCEEEEEEEEecCCceEEEEEE-EEEeC
Confidence 47788888888888888888888878899764 66644
No 5
>1hcf_A Neurotrophin-4; transferase/hormone, complex(transferase/growth factor), neurotrophin-4/5, TRKB receptor, NGF-beta superfamily; 2.7A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b98_A 1b8m_B
Probab=46.31 E-value=10 Score=26.50 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=26.7
Q ss_pred cchheeeeeCCeeEEEEeec-CCCCCCeeeEEEEEEee
Q psy17660 33 GNLAKAVKISDNYYELYLRT-DLYTNRHMQWFYFRINN 69 (126)
Q Consensus 33 GNL~~v~~~~~~ey~L~l~~-D~~t~~~~qWFyF~V~~ 69 (126)
+|+..+..+.+.+..++-.. +.+...+.|||| ..+.
T Consensus 25 ~nkttA~Di~G~~VtVL~~v~~~nn~~~kQyF~-ET~C 61 (130)
T 1hcf_A 25 TDRRTAVDLRGREVEVLGEVPAAGGSPLRQYFF-ETRC 61 (130)
T ss_dssp CCCCEEEBTTSCEEEECSEEECSSSSEEECCEE-EEEE
T ss_pred ccccEEEecCCCEEEEeeeeecCCCcceEEEEE-EEEe
Confidence 47888888888888776655 888778999775 5553
No 6
>1b8k_A NT3, protein (neurotrophin-3); complex (growth factor/growth factor), hormone/growth factor complex; 2.15A {Homo sapiens} SCOP: g.17.1.3 PDB: 1nt3_A 3buk_A* 1bnd_B
Probab=36.57 E-value=15 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=19.9
Q ss_pred chheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeee
Q psy17660 34 NLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNT 70 (126)
Q Consensus 34 NL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~ 70 (126)
|...|..+.+.+..++-....+...+.|||| ..+..
T Consensus 23 ~kt~a~Di~G~~VtVl~~v~~~~~~~kQyF~-ET~C~ 58 (119)
T 1b8k_A 23 DKSSAIDIRGHQVTVLGEIKTGNSPVKQYFY-ETRCK 58 (119)
T ss_dssp CCCEEEBTTSCEEEECSBC------CBCCEE-EEEEC
T ss_pred cCCEEEecCCCEEEEEEEEEcCCCceEEEEE-EEEeC
Confidence 5556666677777766666667767899775 55543
No 7
>3ij2_A Beta-NGF, beta-nerve growth factor; receptor and ligand, cleavage on PAIR of basic residues; 3.75A {Mus musculus}
Probab=24.58 E-value=36 Score=25.92 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=14.9
Q ss_pred CeeEEEEeecCCCCCCeeeEEEEEEeee
Q psy17660 43 DNYYELYLRTDLYTNRHMQWFYFRINNT 70 (126)
Q Consensus 43 ~~ey~L~l~~D~~t~~~~qWFyF~V~~~ 70 (126)
+.+..++-....+...+.|||| ..+..
T Consensus 136 G~~VtVL~ev~~n~~~~kQyFy-ETkC~ 162 (230)
T 3ij2_A 136 GKEVTVLAEVNINNSVFRQYFF-ETKCR 162 (230)
T ss_dssp SCEEEECCCCCTTSCCCCCCCE-EEEES
T ss_pred CCEEEEEEEEecCCcceeEEEE-EEecC
Confidence 3344444444455666899775 55543
No 8
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=23.50 E-value=66 Score=23.39 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=20.2
Q ss_pred ccccccccCCCeEEEEechhhhcCCCCeEEeCCCeEEeecC
Q psy17660 84 SKSESLYSVGMKPLMYSTKEAELNKIGWRRCGENITYFRND 124 (126)
Q Consensus 84 ~k~~sly~~Gm~P~v~s~~~~~~~~~~W~R~g~~i~Yyrn~ 124 (126)
.|+..+-.+|++..++.-+ ++.+.||||.
T Consensus 56 ~~pk~~tLKgyKryWFv~k------------d~~LsyYKsk 84 (173)
T 4f7h_A 56 FKPKKLTLKGYKQYWCTFK------------DTSISCYKSK 84 (173)
T ss_dssp ECCBTTBCCCCEEEEEEEE------------TTEEEEESCG
T ss_pred hcchhcccccceeEEEEEe------------CCEEEEEcCH
Confidence 3455677788888776653 5668888874
No 9
>1bnd_A BDNF, brain derived neurotrophic factor; complex (growth factor-growth factor) complex; 2.30A {Homo sapiens} SCOP: g.17.1.3 PDB: 1b8m_A
Probab=21.72 E-value=38 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred chheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEee
Q psy17660 34 NLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINN 69 (126)
Q Consensus 34 NL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~ 69 (126)
|...|..+.+.+..++-..-.+...+.|||| ..+.
T Consensus 24 ~kttA~Di~G~~VtVl~~v~~~n~~~kQyF~-ET~C 58 (119)
T 1bnd_A 24 DKKTAVDMSGGTVTVLEKVPVSKGQLKQYFY-ETKC 58 (119)
T ss_dssp HHCEEEBTTSCEEEECSEEECSSSEEECEEE-EEEE
T ss_pred CcCEEEecCCCEEEEEEEEecCCCceEEEEE-EEEe
Confidence 3445666666766665444455667899775 5554
No 10
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=18.99 E-value=72 Score=23.04 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=13.3
Q ss_pred ccccccCCCeEEEEechhhhcCCCCeEEeCCCeEEeecC
Q psy17660 86 SESLYSVGMKPLMYSTKEAELNKIGWRRCGENITYFRND 124 (126)
Q Consensus 86 ~~sly~~Gm~P~v~s~~~~~~~~~~W~R~g~~i~Yyrn~ 124 (126)
+..+--+|+++.++..+ ++.|.||||.
T Consensus 37 pkrltLKgfKryWfv~k------------Dt~LsyYKSk 63 (165)
T 4bbk_A 37 PKKLMLKACKQYWFVFK------------DTSIAYFKNK 63 (165)
T ss_dssp -------CCEEEEEEEE------------TTEEEEESSG
T ss_pred ccccccccceeEEEEEe------------CCEEEEEcCH
Confidence 33555567777665543 5568888874
Done!