Query psy17660
Match_columns 126
No_of_seqs 110 out of 434
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 19:45:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17660.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17660hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h6ya_ b.18.1.7 (A:) Xylan-bi 37.7 8.2 0.0006 23.8 2.1 15 19-33 1-15 (157)
2 d1bnda_ g.17.1.3 (A:) Brain-de 30.8 9.6 0.0007 24.2 1.5 36 33-69 16-51 (109)
3 d1bndb_ g.17.1.3 (B:) Neurotro 26.0 21 0.0015 22.5 2.5 36 34-70 16-51 (108)
4 d1eg3a3 b.72.1.1 (A:47-84) Dys 24.1 27 0.002 17.9 2.3 18 108-125 12-31 (38)
5 d1aoza2 b.6.1.3 (A:130-338) As 21.6 29 0.0021 23.0 2.7 24 59-85 71-94 (209)
6 d1hcfa_ g.17.1.3 (A:) Neurotro 20.8 24 0.0017 22.8 2.0 35 34-69 26-61 (127)
7 d1beta_ g.17.1.3 (A:) beta-Ner 19.9 15 0.0011 23.2 0.8 36 33-69 14-49 (107)
8 d1tyeb1 b.1.15.1 (B:58-106,B:3 18.0 32 0.0023 22.0 2.2 24 31-54 16-39 (135)
9 d1zpsa1 b.168.1.1 (A:8-131) Ph 15.8 70 0.0051 20.3 3.4 38 31-69 65-109 (124)
10 d1x5ya1 b.1.2.1 (A:8-105) Myos 13.9 60 0.0044 18.2 2.6 22 64-85 60-81 (98)
No 1
>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}
Probab=37.70 E-value=8.2 Score=23.84 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=13.1
Q ss_pred CCCCceEEEeecCCc
Q psy17660 19 EKSNDLRFESRFESG 33 (126)
Q Consensus 19 ~~~~~l~F~S~FeSG 33 (126)
|..+.+.|+..||+|
T Consensus 1 p~~~~~~~n~~FE~G 15 (157)
T d1h6ya_ 1 PDANGYYYHDTFEGS 15 (157)
T ss_dssp CCTTSEEEEECCSSC
T ss_pred CCCCccEEcCcccCC
Confidence 567889999999998
No 2
>d1bnda_ g.17.1.3 (A:) Brain-derived neurotrophic factor, BDNF {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.80 E-value=9.6 Score=24.20 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=26.2
Q ss_pred cchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEee
Q psy17660 33 GNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINN 69 (126)
Q Consensus 33 GNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~ 69 (126)
+|-..+..+...+.+++-..+.+...+.|+| |.++.
T Consensus 16 ~nk~ta~D~~G~~Vtvl~~v~~~~~~~kQyF-~ET~C 51 (109)
T d1bnda_ 16 ADKKTAVDMSGGTVTVLEKVPVSKGQLKQYF-YETKC 51 (109)
T ss_dssp HHHCEEEBTTSCEEEECSEEECSSSEEECEE-EEEEE
T ss_pred cCcceeEeCCCCEEEEEEEEccCCcEEEEEE-EEEEe
Confidence 4566677777888888878788777788865 45554
No 3
>d1bndb_ g.17.1.3 (B:) Neurotrophin 3, NT3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.00 E-value=21 Score=22.49 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=26.1
Q ss_pred chheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEeee
Q psy17660 34 NLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNT 70 (126)
Q Consensus 34 NL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~~ 70 (126)
|...+..+++.+..++-..+.+...+.|+| |.++..
T Consensus 16 ~k~tA~Di~G~~VtVL~~v~~n~~~~kQyF-~ET~C~ 51 (108)
T d1bndb_ 16 DKSSAIDIRGHQVTVLGEIKTQNSPVKQYF-YETRCK 51 (108)
T ss_dssp CCCEEEBTTSCEEEECSEECTTTSCEECCE-EEEEES
T ss_pred cCcEEEcCCCCEEEEEEEEecCCcEEEEEE-EEEEec
Confidence 455666777888888888888777888855 566643
No 4
>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.10 E-value=27 Score=17.91 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=14.6
Q ss_pred CCCeEEe--CCCeEEeecCC
Q psy17660 108 KIGWRRC--GENITYFRNDL 125 (126)
Q Consensus 108 ~~~W~R~--g~~i~Yyrn~~ 125 (126)
..-|+|. ..++=||.|+-
T Consensus 12 ~~PWeRait~n~VPYYINH~ 31 (38)
T d1eg3a3 12 QGPWERAISPNKVPYYINHE 31 (38)
T ss_dssp CTTEEEEECTTSCEEEEETT
T ss_pred ccchhhhccccCCCeEeecc
Confidence 4579996 68999999873
No 5
>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=21.57 E-value=29 Score=22.99 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=16.3
Q ss_pred eeeEEEEEEeeeccCeeEEEEEecccc
Q psy17660 59 HMQWFYFRINNTRANVYYRFSIVNLSK 85 (126)
Q Consensus 59 ~~qWFyF~V~~~~~~~~~~f~I~N~~k 85 (126)
...+.-|.|+ +|.+++|+|+|..-
T Consensus 71 ~~~~~~~~v~---~g~~~RlRliNa~~ 94 (209)
T d1aoza2 71 SCAPYIFHVS---PKKTYRIRIASTTA 94 (209)
T ss_dssp TTSCCCEEEC---TTCEEEEEEEECCS
T ss_pred CCCceEEEEc---CCCEEEEEEEecCC
Confidence 3345556665 66788888888774
No 6
>d1hcfa_ g.17.1.3 (A:) Neurotrophin 4, NT4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.85 E-value=24 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=23.2
Q ss_pred chheeeeeCCeeEEEEeec-CCCCCCeeeEEEEEEee
Q psy17660 34 NLAKAVKISDNYYELYLRT-DLYTNRHMQWFYFRINN 69 (126)
Q Consensus 34 NL~~v~~~~~~ey~L~l~~-D~~t~~~~qWFyF~V~~ 69 (126)
|...|..+.+.+..+.-.. ..+...+.|+|| ..+.
T Consensus 26 nkttA~Di~G~eVtVL~ev~~~n~~~~kQyFf-ET~C 61 (127)
T d1hcfa_ 26 DRRTAVDLRGREVEVLGEVPAAGGSPLRQYFF-ETRC 61 (127)
T ss_dssp CCCEEEBTTSCEEEECSEEECSSSSEEECCEE-EEEE
T ss_pred cCcEeEcCCCCEEEEeeeeecCCCcEEEEEEE-EEEe
Confidence 5666777777877776655 456667899664 4443
No 7
>d1beta_ g.17.1.3 (A:) beta-Nerve growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.88 E-value=15 Score=23.15 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=24.5
Q ss_pred cchheeeeeCCeeEEEEeecCCCCCCeeeEEEEEEee
Q psy17660 33 GNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINN 69 (126)
Q Consensus 33 GNL~~v~~~~~~ey~L~l~~D~~t~~~~qWFyF~V~~ 69 (126)
+|...|..+.+.+..++-..+.+...+.|+| |.++.
T Consensus 14 ~nk~tA~Di~G~~VtVL~~v~~n~~~~kQyF-~ET~C 49 (107)
T d1beta_ 14 GDKTTATDIKGKEVTVLAEVNINNSVFRQYF-FETKC 49 (107)
T ss_dssp SCCCEEEBTTSCEEEECSEEEETTEEEECCE-EEEEE
T ss_pred ecCcEeEcCCCCEEEEEEEEecCCcEEEEEE-EEEEe
Confidence 3555666677777777766677776788854 56664
No 8
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=32 Score=22.03 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=19.6
Q ss_pred CCcchheeeeeCCeeEEEEeecCC
Q psy17660 31 ESGNLAKAVKISDNYYELYLRTDL 54 (126)
Q Consensus 31 eSGNL~~v~~~~~~ey~L~l~~D~ 54 (126)
.+|....+.|+.+.+..|.|||.-
T Consensus 16 ~~~~~~~~vQi~PQ~i~L~LRpG~ 39 (135)
T d1tyeb1 16 GSGDSSQVTQVSPQRIALRLRPDD 39 (135)
T ss_dssp CSSCCSSCCCBSCSEEEEEECTTC
T ss_pred CCCCCCceEEEeceEEEEEeCCCC
Confidence 456666789999999999999964
No 9
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=15.80 E-value=70 Score=20.35 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.6
Q ss_pred CCcchheeeeeC---CeeEEE-EeecC---CCCCCeeeEEEEEEee
Q psy17660 31 ESGNLAKAVKIS---DNYYEL-YLRTD---LYTNRHMQWFYFRINN 69 (126)
Q Consensus 31 eSGNL~~v~~~~---~~ey~L-~l~~D---~~t~~~~qWFyF~V~~ 69 (126)
+|||...|..+. |...-| ...+. |.+ |++..||=++.+
T Consensus 65 tSG~~q~v~~i~~DCD~D~ll~~V~q~G~aCHt-G~~SCFyr~~~~ 109 (124)
T d1zpsa1 65 SSGHVQRVKDVLVDCDGDAVVLKVEQEGGACHT-GYRSCFYRSIDG 109 (124)
T ss_dssp TTSCCEEEEEEEECTTSSEEEEEEEESSCSSTT-SBSSSCCEEEET
T ss_pred hcCCeeEEEEEEcCCCCCEEEEEEecccceeec-CCCCCcceEecC
Confidence 689998887763 333222 33333 455 778888888864
No 10
>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.90 E-value=60 Score=18.25 Aligned_cols=22 Identities=14% Similarity=0.265 Sum_probs=16.6
Q ss_pred EEEEeeeccCeeEEEEEecccc
Q psy17660 64 YFRINNTRANVYYRFSIVNLSK 85 (126)
Q Consensus 64 yF~V~~~~~~~~~~f~I~N~~k 85 (126)
.|.|.+..++..|.|.|.=.++
T Consensus 60 ~~~v~~L~~~~~Y~frV~A~n~ 81 (98)
T d1x5ya1 60 GFTVKDLPTGARILFRVVGVNI 81 (98)
T ss_dssp EEEEECCCTTCCEEEEEEEEET
T ss_pred EEEECCCcCCeEEEEEEEEECC
Confidence 5678888888888888865543
Done!