RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17660
         (126 letters)



>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
           {Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
          Length = 388

 Score = 93.3 bits (231), Expect = 8e-24
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 1/107 (0%)

Query: 15  NFQSEKSNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANV 74
           +    +   ++  + F+SGN+            L +R DL +  H QWF+F++       
Sbjct: 5   SHPQFEKGAMQIRADFDSGNIQVIDASDPRRIRLAIRPDLASQ-HFQWFHFKVEGMAPAT 63

Query: 75  YYRFSIVNLSKSESLYSVGMKPLMYSTKEAELNKIGWRRCGENITYF 121
            + F++VN  +S   ++      + S       ++  +   + + + 
Sbjct: 64  EHCFTLVNAGQSAYSHAWSGYQAVASYDGERWFRVPSQYDADGLHFQ 110


>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
           structural genomics, joint CENT structural genomics,
           JCSG; 2.39A {Shewanella denitrificans}
          Length = 395

 Score = 82.5 bits (203), Expect = 7e-20
 Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 3/117 (2%)

Query: 6   VGGNR-FFVSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFY 64
           +G ++     + ++     +R  + F+ GN+      + +  +L +R D       QWF 
Sbjct: 1   MGSDKIHHHHHHENLYFQGMRISANFDGGNIETISLANPDDIQLAIRPDAGGE-FYQWFN 59

Query: 65  FRINNTRANVYYRFSIVNLSKSESLYSVGMKPLMYSTKEAELNKIGWRRCGENITYF 121
           FR   T     Y  +I+N   +  L        + S       ++        ++  
Sbjct: 60  FRFEATI-GKTYTLNILNAGGASYLKGWEDYQAVASYDRQTWFRLPTEYKDGKLSIS 115


>3k2k_A Putative carboxypeptidase; structural genomics, joint center
           structural genomics, JCSG, protein structure initiative;
           2.49A {Burkholderia mallei atcc 23344}
          Length = 403

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 22/112 (19%)

Query: 15  NFQSEKSNDLRFESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRANV 74
           N   +    L   S F++G +        +   L +R D   +   QWFYFR+   R   
Sbjct: 14  NLYFQ-GMTLSITSNFDAGAIDVVSCERADAIRLRVRGD-NRSEFAQWFYFRLTGARGER 71

Query: 75  YYRFSIVNLSKSESLYSVGMKPLMYSTKEAELNKIGWRRCGENITYFRNDLR 126
                                 + +          GWR      +Y R +  
Sbjct: 72  CV--------------------MTFENANDCAYPAGWRDYRAVASYDRVNWF 103


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.16
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 41/135 (30%)

Query: 10  RF--FVSNFQSEKSND-----LR-----FESRFESGN----LAKAVKISDNYYELYLRTD 53
           +F  +VS+             L      FE+ +  GN    LA  +   +        T 
Sbjct: 63  KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN-------DTT 115

Query: 54  LYTNRHMQWFYFRINNTRANVYYRFSIVNLSKSESLYSVGMKPLMYSTKEAELNKI--GW 111
           L   + +   Y       A +  +      S S    +V           A+L  I  G 
Sbjct: 116 LVKTKELIKNYI-----TARIMAKRPFDKKSNSALFRAV-------GEGNAQLVAIFGGQ 163

Query: 112 RRCGENITYFRNDLR 126
              G    YF  +LR
Sbjct: 164 ---GNTDDYFE-ELR 174


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.44
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 20/97 (20%)

Query: 12  FVSNFQSEKSNDLRFESRFESGNLAKAVKISDNYYE---LYLRTDLYTNRHMQWFYFR-- 66
              N+ S   +    + R  S        +    YE   L L  ++   +    F     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCK 267

Query: 67  -INNTR---------ANVYYRFSIVN----LSKSESL 89
            +  TR         A      S+ +    L+  E  
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 2.2
 Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)

Query: 79  SIVNLSKSESLYSVGMKP-L-MYSTKE 103
           ++  L  S  LY+    P L + +T E
Sbjct: 21  ALKKLQASLKLYADDSAPALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0505    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,811,868
Number of extensions: 87491
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 11
Length of query: 126
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 44
Effective length of database: 4,412,271
Effective search space: 194139924
Effective search space used: 194139924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)