RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17660
         (126 letters)



>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428
           {Clostridium perfringens [TaxId: 1502]}
          Length = 426

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 26  FESRFESGNLAKAVKISDNYYELYLRTDLYTNRHMQWFYFRINNTRA------NVYYRFS 79
           +E ++E  +L   V++   Y++       + +   + F   I+  R          Y F 
Sbjct: 127 WERKYEIDSLCYPVRLIHKYWKESGDETFFNDDIKKAFNMIIDLWRVEQYHREKSDYSFQ 186

Query: 80  IVNLSKSESL 89
            +N S +++L
Sbjct: 187 RLNCSVTDTL 196


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 458,660
Number of extensions: 18164
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)