BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17663
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L2N|A Chain A, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
pdb|3L2N|B Chain B, Crystal Structure Of Putative Carboxypeptidase A
(yp_562911.1) From Shewanella Denitrificans Os-217 At
2.39 A Resolution
Length = 395
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMD-FLTGDSAQAKELREKFIFKLIPMLNPDGVIVGN 63
KK+I IT+R HPGET + W+++G ++ L D +K L +K F ++P NPDG + G+
Sbjct: 175 KKSIWITARQHPGETXAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNXNPDGSVRGH 234
Query: 64 NRCSLTGRDLNRQYRTVIRETYPPVWH 90
R + G +LNR+++T E P V++
Sbjct: 235 LRTNAVGANLNREWQTPSLERSPEVYY 261
>pdb|4A37|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A37|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa
pdb|4A38|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A38|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aureginosa In
Complex With L-Benzylsuccinic Acid
pdb|4A39|A Chain A, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
pdb|4A39|B Chain B, Metallo-Carboxypeptidase From Pseudomonas Aeruginosa In
Complex With (2-Guanidinoethylmercapto)succinic Acid
Length = 388
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLT-GDSAQAKELREKFIFKLIPMLNPDGVI 60
SH K + + ++ HPGE + W M+G ++ L D + + L EK L+P +NPDG
Sbjct: 169 SHLK--LWVIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGAF 226
Query: 61 VGNNRCSLTGRDLNRQYRTVIRETYPPVW 89
GN R + G+DLNR + E P VW
Sbjct: 227 HGNLRTNAAGQDLNRAWLEPSAERSPEVW 255
>pdb|3K2K|A Chain A, Crystal Structure Of Putative Carboxypeptidase
(Yp_103406.1) From Burkholderia Mallei Atcc 23344 At
2.49 A Resolution
Length = 403
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTG-----DSAQAKELREKFIFKLIPMLNPDGV 59
KK + I +R HPGE+ + W ++G + L G A++L + F ++P NPDG
Sbjct: 180 KKKVWIIARQHPGESXAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNXNPDGS 239
Query: 60 IVGNNRCSLTGRDLNRQYRTVIRETYPPV 88
+ GN R + G +LNR++ E P V
Sbjct: 240 VHGNLRTNAAGANLNREWXEPDAERSPEV 268
>pdb|3IEH|A Chain A, Crystal Structure Of Putative Metallopeptidase
(Yp_001051774.1) From Shewanella Baltica Os155 At 2.45 A
Resolution
Length = 276
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 7 AIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRC 66
+++I++ H E+ W G + FL+ SA +L E+ L+P++NP G G +R
Sbjct: 68 SLLISAGFHGEESAGPW---GLLHFLSEASA---DLFERVNLSLLPLVNPTGFSRG-HRF 120
Query: 67 SLTGRDLNRQY 77
+ G + NR +
Sbjct: 121 NKYGENPNRGF 131
>pdb|2C1C|A Chain A, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
pdb|2C1C|B Chain B, Structural Basis Of The Resistance Of An Insect
Carboxypeptidase To Plant Protease Inhibitors
Length = 312
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 4 RKKAIVITSRVHPGETPS----SWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDG 58
K I I +H E S +W + ++ +T +L EKF + L+P++NPDG
Sbjct: 55 NKPVIFIDGGIHAREWISPPSVTWAIHKLVEDVT-----ENDLLEKFDWILLPVVNPDG 108
>pdb|3B2Y|A Chain A, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
pdb|3B2Y|B Chain B, Crystal Structure Of A Putative Metallopeptidase
(Sden_2526) From Shewanella Denitrificans Os217 At 1.74
A Resolution
Length = 275
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 7 AIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRC 66
+++I+S H E W G + FL G L E+ L+P++NP G G +R
Sbjct: 68 SLLISSGFHGEEAAGPW---GXLHFLRG---LQPALFERVNLSLLPLVNPTGFKAG-HRF 120
Query: 67 SLTGRDLNRQY 77
+ G + NR +
Sbjct: 121 NRFGENPNRGF 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,902,899
Number of Sequences: 62578
Number of extensions: 131939
Number of successful extensions: 340
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 333
Number of HSP's gapped (non-prelim): 8
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)