Query psy17663
Match_columns 149
No_of_seqs 147 out of 1466
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:48:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06908 M14_AGBL4_like Peptida 100.0 4E-38 8.7E-43 258.4 13.8 117 3-131 41-157 (261)
2 cd06907 M14_AGBL2-3_like Pepti 100.0 8.3E-37 1.8E-41 250.5 14.1 115 3-131 44-158 (261)
3 cd06236 M14_AGBL5_like Peptida 100.0 1.6E-36 3.4E-41 253.4 14.0 115 3-131 65-180 (304)
4 cd03856 M14_Nna1_like Peptidas 100.0 4.9E-36 1.1E-40 246.8 15.0 116 3-131 51-166 (269)
5 cd06235 M14_Nna1_like_2 Subgro 100.0 4E-36 8.6E-41 245.9 13.4 115 3-131 43-157 (258)
6 cd06906 M14_Nna1 Peptidase M14 100.0 1.2E-35 2.7E-40 245.1 13.4 116 3-131 50-165 (278)
7 cd06234 M14_Nna1_like_1 A bact 100.0 3.5E-34 7.6E-39 235.4 12.8 111 3-131 53-164 (263)
8 cd06237 M14_Nna1_like_3 A bact 100.0 3.7E-32 8.1E-37 221.1 13.1 113 3-131 49-161 (244)
9 KOG2650|consensus 100.0 1.8E-31 3.9E-36 230.7 10.2 113 3-131 167-315 (418)
10 cd03872 M14_CPA6 Carboxypeptid 100.0 9.3E-31 2E-35 218.5 10.6 112 4-131 49-194 (300)
11 cd06227 Peptidase_M14-like_2 A 100.0 1.2E-30 2.7E-35 215.1 11.2 110 4-131 51-188 (272)
12 cd06247 M14_CPO Peptidase M14 100.0 5.3E-30 1.2E-34 213.8 11.7 113 3-131 50-196 (298)
13 cd06248 M14_CPA_CPB_like Pepti 100.0 3.9E-30 8.4E-35 214.8 10.5 115 3-131 52-200 (304)
14 cd03870 M14_CPA Peptidase M14 100.0 8.4E-30 1.8E-34 212.8 11.2 111 4-131 52-196 (301)
15 cd06246 M14_CPB2 Peptidase M14 100.0 9.8E-30 2.1E-34 212.2 11.2 113 3-131 51-197 (300)
16 cd06229 M14_Endopeptidase_I Pe 100.0 1E-29 2.2E-34 207.2 11.0 112 2-131 13-176 (255)
17 cd06226 M14_CPT_like Peptidase 100.0 2.3E-29 5E-34 209.5 11.4 126 3-131 40-204 (293)
18 cd03871 M14_CPB Peptidase M14 100.0 2.1E-29 4.5E-34 210.4 10.8 113 3-131 51-197 (300)
19 cd06245 M14_CPD_III The third 100.0 2.4E-29 5.2E-34 214.7 11.3 110 4-131 52-176 (363)
20 PF00246 Peptidase_M14: Zinc c 100.0 7.6E-30 1.6E-34 208.3 7.7 111 3-131 44-182 (279)
21 cd03868 M14_CPD_I The first ca 100.0 3E-29 6.5E-34 214.1 11.7 110 4-131 51-180 (372)
22 cd03859 M14_CPT Peptidase M14- 100.0 4.4E-29 9.5E-34 207.3 11.7 112 3-131 52-203 (295)
23 cd03858 M14_CP_N-E_like Carbox 100.0 5.7E-29 1.2E-33 212.1 11.1 110 4-131 51-181 (374)
24 smart00631 Zn_pept Zn_pept. 100.0 1.1E-28 2.5E-33 202.7 11.8 112 3-131 47-187 (277)
25 cd06228 Peptidase_M14-like_3 A 100.0 1.3E-28 2.8E-33 208.0 11.2 111 3-131 26-195 (332)
26 cd03866 M14_CPM Peptidase M14 100.0 1.6E-28 3.4E-33 210.5 11.4 110 4-131 55-178 (376)
27 cd03863 M14_CPD_II The second 100.0 1.8E-28 3.8E-33 210.2 11.3 110 4-131 56-180 (375)
28 KOG3641|consensus 100.0 1.5E-28 3.3E-33 216.3 10.1 117 3-131 427-543 (650)
29 cd06239 Peptidase_M14-like_1_2 100.0 3.2E-28 7E-33 196.8 11.2 108 2-131 30-138 (231)
30 cd03860 M14_CP_A-B_like The Pe 100.0 3.3E-28 7.1E-33 201.7 11.2 113 3-131 47-191 (294)
31 cd06242 Peptidase_M14-like_1_5 100.0 5E-28 1.1E-32 199.2 11.2 105 3-130 52-156 (268)
32 cd06238 Peptidase_M14-like_1_1 100.0 4.3E-28 9.3E-33 200.0 10.5 107 2-129 45-178 (271)
33 cd03864 M14_CPN Peptidase M14 100.0 6E-28 1.3E-32 207.9 11.3 110 4-131 51-198 (392)
34 cd03867 M14_CPZ Peptidase M14- 100.0 5.9E-28 1.3E-32 208.0 11.1 110 4-131 51-200 (395)
35 cd06905 Peptidase_M14-like_8 A 99.9 1.1E-27 2.5E-32 204.2 11.6 112 3-131 53-265 (360)
36 cd03862 Peptidase_M14-like_7 A 99.9 2.4E-27 5.2E-32 195.8 12.2 109 4-127 23-159 (273)
37 cd06243 Peptidase_M14-like_1_6 99.9 2.8E-27 6.1E-32 191.8 11.7 103 3-127 27-130 (236)
38 cd03857 Peptidase_M14-like_1 P 99.9 8.2E-27 1.8E-31 187.2 11.7 103 4-128 30-132 (226)
39 cd06244 Peptidase_M14-like_1_7 99.9 6.8E-27 1.5E-31 192.5 11.5 106 4-131 51-173 (268)
40 cd06241 Peptidase_M14-like_1_4 99.9 5.4E-27 1.2E-31 192.9 9.9 105 3-130 46-164 (266)
41 cd03869 M14_CPX_like Peptidase 99.9 1.5E-26 3.2E-31 199.9 12.1 110 4-131 55-210 (405)
42 cd00596 Peptidase_M14_like The 99.9 1.6E-26 3.4E-31 179.6 9.8 106 8-131 1-109 (196)
43 cd03865 M14_CPE_H Peptidase M1 99.9 1.1E-25 2.3E-30 194.4 12.1 110 4-131 55-206 (402)
44 cd06904 M14_MpaA_like Peptidas 99.9 3.4E-25 7.3E-30 172.2 8.6 100 8-132 1-115 (178)
45 cd06231 Peptidase_M14-like_4 A 99.9 6.5E-24 1.4E-28 172.1 10.5 102 4-130 41-142 (236)
46 cd06240 Peptidase_M14-like_1_3 99.9 6.5E-24 1.4E-28 175.4 10.6 105 3-128 55-179 (273)
47 PRK10602 murein peptide amidas 99.9 2.7E-23 5.9E-28 168.7 9.8 98 3-128 37-160 (237)
48 cd06232 Peptidase_M14-like_5 P 99.9 2.7E-21 5.9E-26 156.3 9.5 96 3-129 36-145 (240)
49 KOG2649|consensus 99.7 1.4E-17 3.1E-22 145.3 9.6 111 3-131 118-262 (500)
50 cd06230 M14_ASTE_ASPA_like The 99.6 7.4E-16 1.6E-20 125.1 8.7 98 8-130 1-98 (252)
51 cd06251 M14_ASTE_ASPA_like_1 A 99.6 1E-15 2.2E-20 126.8 7.4 102 3-129 18-119 (287)
52 cd06255 M14_ASTE_ASPA_like_5 A 99.6 3E-15 6.5E-20 124.5 9.2 103 3-130 22-125 (293)
53 cd06250 M14_PaAOTO_like An unc 99.6 7.6E-15 1.6E-19 125.4 9.2 74 4-80 26-105 (359)
54 cd06233 Peptidase_M14-like_6 P 99.6 9.4E-15 2E-19 121.5 9.3 71 3-79 49-120 (283)
55 cd06254 M14_ASTE_ASPA_like_4 A 99.5 1.6E-14 3.6E-19 119.5 8.0 101 3-129 15-118 (288)
56 cd06253 M14_ASTE_ASPA_like_3 A 99.5 2.5E-14 5.4E-19 119.3 8.2 108 2-129 16-124 (298)
57 cd06252 M14_ASTE_ASPA_like_2 A 99.5 2.7E-14 5.9E-19 119.8 7.9 99 5-128 34-133 (316)
58 PF04952 AstE_AspA: Succinylgl 99.5 2.6E-14 5.7E-19 117.1 5.3 107 5-131 2-113 (292)
59 COG2866 Predicted carboxypepti 99.5 8.9E-14 1.9E-18 119.6 7.4 85 3-87 145-230 (374)
60 TIGR02994 ectoine_eutE ectoine 99.5 2.5E-13 5.4E-18 114.8 8.5 102 4-130 46-148 (325)
61 cd06256 M14_ASTE_ASPA_like_6 A 99.4 8.8E-13 1.9E-17 111.6 9.0 101 4-130 33-133 (327)
62 PRK02259 aspartoacylase; Provi 99.4 2.8E-12 6.1E-17 106.5 8.6 102 6-129 3-108 (288)
63 cd06909 M14_ASPA Aspartoacylas 99.3 6.4E-12 1.4E-16 104.4 8.7 101 6-128 1-105 (282)
64 COG3608 Predicted deacylase [G 99.3 1.4E-11 3E-16 104.3 8.4 104 3-131 46-150 (331)
65 cd06910 M14_ASTE_ASPA_like_7 A 99.3 1.6E-11 3.5E-16 101.1 7.8 98 6-130 1-106 (272)
66 PRK05324 succinylglutamate des 99.2 3.5E-11 7.7E-16 101.9 9.2 107 3-127 45-153 (329)
67 cd03855 M14_ASTE Peptidase M14 99.2 1.2E-10 2.5E-15 98.3 9.1 105 3-127 40-149 (322)
68 TIGR03242 arg_catab_astE succi 99.2 1.4E-10 3.1E-15 97.7 9.0 105 3-127 39-148 (319)
69 PF10994 DUF2817: Protein of u 98.9 5.3E-09 1.2E-13 89.2 9.9 69 4-78 50-119 (341)
70 COG2988 Succinylglutamate desu 97.8 2.3E-05 4.9E-10 65.8 4.8 99 7-127 45-148 (324)
71 PF09892 DUF2119: Uncharacteri 97.5 0.00037 8E-09 55.2 6.8 88 2-131 2-90 (193)
72 KOG3641|consensus 96.6 0.00063 1.4E-08 61.6 0.3 69 10-86 130-198 (650)
73 COG4073 Uncharacterized protei 96.2 0.014 3.1E-07 45.7 6.1 80 9-131 18-97 (198)
74 PF05127 Helicase_RecD: Helica 49.0 15 0.00032 28.8 2.3 32 3-34 112-143 (177)
75 PF07745 Glyco_hydro_53: Glyco 35.8 61 0.0013 27.8 4.3 15 116-131 70-84 (332)
76 COG0505 CarA Carbamoylphosphat 34.4 62 0.0013 28.4 4.1 41 4-63 179-228 (368)
77 PF12444 Sox_N: Sox developmen 33.5 29 0.00063 24.1 1.6 16 38-53 65-80 (84)
78 cd05313 NAD_bind_2_Glu_DH NAD( 31.2 1E+02 0.0023 25.4 4.8 56 4-61 2-75 (254)
79 TIGR01700 PNPH purine nucleosi 29.5 42 0.00091 27.2 2.2 25 3-27 49-73 (249)
80 COG1182 AcpD Acyl carrier prot 25.7 1.5E+02 0.0032 23.9 4.6 65 6-72 3-67 (202)
81 cd01304 FMDH_A Formylmethanofu 25.5 4.2E+02 0.0092 24.4 8.0 34 40-73 165-198 (541)
82 PF00838 TCTP: Translationally 24.8 67 0.0015 24.8 2.5 23 43-65 125-148 (165)
83 PF05013 FGase: N-formylglutam 24.6 80 0.0017 24.9 3.0 19 116-134 130-148 (222)
84 PF12897 Aminotran_MocR: Alani 22.9 58 0.0013 29.0 1.9 16 47-62 175-191 (425)
85 PF15162 DUF4580: Domain of un 22.9 74 0.0016 24.7 2.3 42 5-61 75-117 (162)
86 TIGR03121 one_C_dehyd_A formyl 21.2 5E+02 0.011 24.0 7.6 35 40-74 169-203 (556)
87 COG1444 Predicted P-loop ATPas 20.8 82 0.0018 30.2 2.6 28 6-33 348-375 (758)
No 1
>cd06908 M14_AGBL4_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-4, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL4 and the mouse cytosolic carboxypeptidase (CCP)-6. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=4e-38 Score=258.43 Aligned_cols=117 Identities=41% Similarity=0.717 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.|||||+||+|++++++++++|+++++.++.|+++++|+||||+||||+++|++|+||.|+||||||.+|++
T Consensus 41 ~~k~~I~i~ariHp~E~~~s~~~~~li~~L~~~~~~~~~L~~~~~~~IvP~~NPDGv~~gn~R~~~~G~DLNR~w~~p~~ 120 (261)
T cd06908 41 SEKKVIFITARVHPGESPSSYVCQGLIDFLVSNHPIAKVLREHLVFKIVPMLNPDGVFLGNYRCSLMGHDLNRHWHDPSP 120 (261)
T ss_pred CCCcEEEEECCcCCCChHHHHHHHHHHHHHhhCCHHHHHHHHhCcEEEEeeecCcceeecCCcCcCcCcCCCCCCCCCCc
Confidence 46899999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+++||+++++++++++.++. +.++++|||+|+|+++.
T Consensus 121 ~~~PEv~av~~~i~~~~~~~------------~~~i~~~lD~H~hs~~~ 157 (261)
T cd06908 121 WAHPTLHAVKNLLKELDNDS------------TTQLDFYIDLHAHSSLM 157 (261)
T ss_pred ccChHHHHHHHHHHHhhhcc------------ccCeeEEEEeecccccc
Confidence 99999999999999876531 26899999999999987
No 2
>cd06907 M14_AGBL2-3_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-2, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subgroup includes the human AGBL-2, and -3, and the mouse cytosolic carboxypeptidase (CCPs)-2, and -3. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N
Probab=100.00 E-value=8.3e-37 Score=250.49 Aligned_cols=115 Identities=53% Similarity=1.013 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.|||||+|+.+++++.+++++|+++++.++.|+++++|+||||+||||++.|++|+|+.|+||||+|..|.+
T Consensus 44 ~~K~~I~I~ariHp~E~~~s~~~~gll~~L~~~~~~a~~Lr~~~~f~IvPmlNPDGv~~G~~R~~~~G~DLNR~w~~p~~ 123 (261)
T cd06907 44 AAKKAVVLTARVHPGETNASWMMKGFLDFLTSNSPDAQLLRDTFIFKIVPMLNPDGVIVGNYRCSLAGRDLNRNYKTPLK 123 (261)
T ss_pred CCCCEEEEECCcCCChHHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEEeecCccccccCCcCCCcCCCCCcCCCCCCc
Confidence 46999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++||++++|++++.+.++ .++++|||+|||+++.
T Consensus 124 ~~~P~i~~~k~li~~l~~~--------------~~i~~ylDlHghs~~~ 158 (261)
T cd06907 124 DSFPTIWYTKNMVKRLLEE--------------REVILYCDLHGHSRKN 158 (261)
T ss_pred ccCchHHHHHHHHHHHHhc--------------CCeEEEEEeccchhcc
Confidence 9999999999999988654 6899999999999997
No 3
>cd06236 M14_AGBL5_like Peptidase M14-like domain of ATP/GTP binding protein_like (AGBL)-5, and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human AGBL5 and the mouse cytosolic carboxypeptidase (CCP)-5. ATP/GTP binding protein (AGTPBP-1/Nna1)-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Mutations in AGTPBP-1/Nna1 cause Purkinje cell degeneration (pcd). AGTPBP-1/Nna1 however does not belong to this subgroup. AGTPBP-1/Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal
Probab=100.00 E-value=1.6e-36 Score=253.44 Aligned_cols=115 Identities=42% Similarity=0.677 Sum_probs=109.0
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc-CCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-DSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~-~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~ 81 (149)
++||.|||.|+|||+||.|++++++++++|++ +++.++.|+++++|+||||+||||+++|++|+||.|+||||+|.+|+
T Consensus 65 ~~K~~V~I~ariHp~E~~~s~~~~~ll~~Ll~~~d~~a~~L~~~~~~~IvPmlNPDGv~~g~~R~~~~G~DLNR~y~~p~ 144 (304)
T cd06236 65 FGKPVVFISSRVHPGETPSSFVFNGFLKFLLNKDDPRAALLRRRFVFKLIPMLNPDGVYRGHYRTDTRGVNLNRVYLNPD 144 (304)
T ss_pred cCCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCCHHHHHHHhCCeEEEEEeEcccccccCccccCCcCCCcCcCCCCCC
Confidence 57999999999999999999999999999997 48899999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 82 RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 82 ~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+.++||+++++++++.+..+ .++++|||+|+|+++.
T Consensus 145 ~~~~Pei~aik~~i~~~~~~--------------~~i~~yiDlH~hs~~~ 180 (304)
T cd06236 145 PELHPSIYAIKKLILYLHEE--------------SRLAFYIDLHAHASKR 180 (304)
T ss_pred cccCHHHHHHHHHHHHhhcc--------------CCceEEEEeccccccc
Confidence 99999999999999887543 6899999999999998
No 4
>cd03856 M14_Nna1_like Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This subfamily includes the human AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. M
Probab=100.00 E-value=4.9e-36 Score=246.79 Aligned_cols=116 Identities=46% Similarity=0.807 Sum_probs=108.2
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.|++||+||+|++++++++++|+++++.++++|++++|+||||+||||+++|+||+|+.|+||||||.+|++
T Consensus 51 ~~k~~i~i~a~iH~~E~~~~~~~~~li~~Ll~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~G~DLNR~~~~p~~ 130 (269)
T cd03856 51 ANKKYIFLIARVHPGETNASWVMKGFLEFLLSDNPTAQSLRESFVFKIVPMLNPDGVIRGNYRCSLSGVDLNRQWQNPSP 130 (269)
T ss_pred CCCcEEEEEcCcCCCchHHHHHHHHHHHHHHhCCHHHHHHHhcCeEEEEeeeCCccccccCCcCCCCCCCcCCCCCCCCC
Confidence 57999999999999999999999999999998777799999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++||+++++++++++.++ +.++++|+|+|+|+.+.
T Consensus 131 ~~~pE~~~~~~~~~~~~~~-------------~~~~~~~idlH~~~~~~ 166 (269)
T cd03856 131 DLHPEIYLVKGLMLYLAAG-------------KRGVLFYCDFHGHSRKK 166 (269)
T ss_pred CCCCCHHHHHHHHHHHHhc-------------cCCceEEEEecCCCccC
Confidence 9999999999999887553 26899999999999553
No 5
>cd06235 M14_Nna1_like_2 Subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the human Nna1/AGTPBP-1 and AGBL -2, -3, -4, and -5, and the mouse Nna1/CCP-1 and CCP -2 through -6. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induc
Probab=100.00 E-value=4e-36 Score=245.92 Aligned_cols=115 Identities=51% Similarity=0.871 Sum_probs=108.8
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.||+||+|++|++++++++++|+++++.++.||++++|+||||+||||+++|++|+|+.|+||||||..|++
T Consensus 43 ~~k~~V~i~a~iH~~E~~~s~~~~~ll~~Ll~~~~~~~~Ll~~~~~~iiPm~NPDG~~~g~~R~n~~GvDLNR~w~~p~~ 122 (258)
T cd06235 43 KKKKVIVITARQHPGETNSSFVMQGFIDFLLSDSPEAQYLRENFIFKIIPMLNPDGVIHGNYRCSLSGIDLNRQWKNPDK 122 (258)
T ss_pred CCCcEEEEECCcCCCChHHHHHHHHHHHHHhcCCHHHHHHHhccEEEEEccccccceeecCCcCCCCCCCcCCCCCCCCc
Confidence 47999999999999999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++||++++++++.++.++ .++++|+|+|+|+++.
T Consensus 123 ~~~PE~~~~~~~i~~~~~~--------------~~~~~~iDlH~~s~~~ 157 (258)
T cd06235 123 KLHPEIYHVKQLIKKLSQE--------------RNIALFIDLHGHSRKK 157 (258)
T ss_pred ccCcHHHHHHHHHHHHhcc--------------CCceEEEecccccccC
Confidence 9999999999999987544 6899999999999976
No 6
>cd06906 M14_Nna1 Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP), and related proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. This eukaryotic subgroup includes the mouse Nna1/CCP-1, and -4 proteins, and the human Nna1/AGTPBP-1 protein. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins such as alpha-tubulin, to remove a C-terminal tyrosine. Nna1 is widely expressed in the developing and adult nervous systems, including cerebellar Purkinje and granule neurons, miral cells of the olfactory bulb and retinal photoreceptors. Nna1 is also induced in axotomized motor neurons. Mutations in Nna
Probab=100.00 E-value=1.2e-35 Score=245.12 Aligned_cols=116 Identities=45% Similarity=0.793 Sum_probs=109.5
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.|||||+|+.|+|++.+++++|+++++.++.|+++++|+||||+|||||++|++|+|+.|+||||+|..|++
T Consensus 50 ~~kp~I~I~ARvHPgEt~~Swi~~g~l~~L~~~d~~a~~Lr~~~~f~IvPmlNPDGvv~Gn~Rc~~~G~DLNR~w~~p~~ 129 (278)
T cd06906 50 RNRPYIFLSARVHPGETNASWVMKGTLEFLMSSSPTAQSLRESYIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPNP 129 (278)
T ss_pred cCCcEEEEEcccCCCcchHHHHHHHHHHHHhCCCHHHHHHHHhCcEEEEeeecCccceecccccCCCCCCCCCCCCCCCc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
..+||++++|++++.+.+. +..+.+|||+|||+.+.
T Consensus 130 ~~~P~i~~~k~l~~~l~~~-------------~~~~~~yiDlHghs~~~ 165 (278)
T cd06906 130 ELHPTIYHTKGLLQYLAAI-------------KRSPLVYCDYHGHSRKK 165 (278)
T ss_pred ccChHHHHHHHHHHHHHHh-------------CCCceEEEeeccccccc
Confidence 9999999999998887653 25788999999999998
No 7
>cd06234 M14_Nna1_like_1 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=100.00 E-value=3.5e-34 Score=235.35 Aligned_cols=111 Identities=32% Similarity=0.566 Sum_probs=103.3
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc-CCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-DSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~-~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~ 81 (149)
++||.|||.|||||+|+.|+++++++++.|++ .++.++++|++++|+|||++||||+++|++|.||.|+||||||.+|+
T Consensus 53 ~~k~~V~i~a~iH~~E~~g~~~~~~ll~~L~~~~d~~~~~ll~~~~~~IvP~~NPDG~~~g~~R~n~~GvDLNRnw~~p~ 132 (263)
T cd06234 53 PGKKKLWIIARQHPGETMAEWFMEGLLERLLDPDDAVARALLEKAVFYVVPNMNPDGSARGHLRTNAAGANLNREWAEPS 132 (263)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHHHHhhcCCHHHHHHHhcCEEEEEeeecchhhhhcCCccCCCCCCCCCCCCCCC
Confidence 47899999999999999999999999999986 67899999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 82 RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 82 ~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+.++||+++++++++. .++++|+|+|++++.-
T Consensus 133 ~~s~PEt~av~~~~~~------------------~~~~~~ld~Hs~~~~p 164 (263)
T cd06234 133 AERSPEVFAVRQRMEE------------------TGVDFFLDVHGDEALP 164 (263)
T ss_pred CCCCHHHHHHHHHHHh------------------cCCeEEEEeCCCCCCC
Confidence 9999999998877653 4689999999999873
No 8
>cd06237 M14_Nna1_like_3 A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP),-like proteins. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.
Probab=99.98 E-value=3.7e-32 Score=221.11 Aligned_cols=113 Identities=35% Similarity=0.486 Sum_probs=103.6
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||.|||.|++||+|++|+.+++++++.|+++++.++++|++++|+|+|++||||+++++||+|++|+||||||. +
T Consensus 49 ~~k~~v~i~~~iH~~E~~g~~~~~~~~~~l~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~wR~N~~GvDLNRnw~---~ 125 (244)
T cd06237 49 DSKEWIVVISRQHPPEVTGALAMKAFIETLLSDSELAKKFRAKYNVLLVPNMNPDGVDLGHWRHNANGIDLNRDWS---N 125 (244)
T ss_pred CCCceEEEEcCcCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHhCEEEEEEeeCcchhhcCCccCCCCCcCCCCCCC---C
Confidence 4589999999999999999999999999999877778999999999999999999999999999999999999998 4
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++||++++.++++.+..+ ++.+.+++|+|++++.+
T Consensus 126 ~sepEt~a~~~~~~~~~~~-------------~~~~~~~id~Hs~~~~i 161 (244)
T cd06237 126 FNQPETRAIRDYLVRLVKE-------------GGKIVFALDFHSTWHDV 161 (244)
T ss_pred CCCHHHHHHHHHHHHHhcc-------------CCCEEEEEEeccCCcce
Confidence 6799999999998877543 26899999999999988
No 9
>KOG2650|consensus
Probab=99.97 E-value=1.8e-31 Score=230.73 Aligned_cols=113 Identities=25% Similarity=0.304 Sum_probs=101.2
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc-----ccCC-------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN-----NRCS------- 67 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~-----~R~n------- 67 (149)
.+||.|||.||||++||+++.+++++|.+|+. .++.++++|++++|+|+|++||||+++++ ||+|
T Consensus 167 ~~k~~I~id~GiHAREWIspAta~~~i~qLv~~y~~~~~~~~ll~~~dwyI~Pv~NPDGYeYS~t~~R~WRKnRs~~~~~ 246 (418)
T KOG2650|consen 167 RNKKAIFIDAGIHAREWISPATALWFINQLVSSYGRDPAVTKLLDKLDWYILPVVNPDGYEYSRTTDRLWRKNRSPNGCA 246 (418)
T ss_pred CCCceEEEecchhHHhhccHHHHHHHHHHHHhhhccCHHHHHHHhcCcEEEEeeecCCcceeeecccccccccCCCCCCC
Confidence 56999999999999999999999999999986 58899999999999999999999999964 4532
Q ss_pred --CCCCCCCCCCC-------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecC
Q psy17663 68 --LTGRDLNRQYR-------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHS 126 (149)
Q Consensus 68 --~~GvDLNRnw~-------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs 126 (149)
|.|+||||||. +++|+|+||++++.+++.... .++.+||+|||
T Consensus 247 ~~C~GvDlNRNfd~~W~~~~Gas~~PCse~Y~G~~pfSEpEt~av~~fi~~~~----------------~~i~~yislHS 310 (418)
T KOG2650|consen 247 SRCIGVDLNRNFDFHWGGGKGASSDPCSETYAGPSPFSEPETRAVRDFITSFE----------------NNIKAYISLHS 310 (418)
T ss_pred CeeeCCCCCCCccCcCCCCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHhcC----------------cceEEEEEecc
Confidence 79999999996 578999999999988887632 34899999999
Q ss_pred CCccC
Q psy17663 127 KQEPA 131 (149)
Q Consensus 127 ~s~~~ 131 (149)
|+|.+
T Consensus 311 YsQ~l 315 (418)
T KOG2650|consen 311 YSQLL 315 (418)
T ss_pred cceeE
Confidence 99998
No 10
>cd03872 M14_CPA6 Carboxypeptidase (CP) A6 (CPA6, also known as CPAH; EC 3.4.17.1), belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA6 prefers large hydrophobic C-terminal amino acids as well as histidine, while peptides with a penultimate glycine or proline are very poorly cleaved. Several neuropeptides are processed by CPA6, including Met- and Leu-enkephalin, angiotensin I, and neurotensin. CPA6 converts enkephalin and neurotensin into forms known to be inactive toward their receptors, but converts inactive angiotensin I into the biologically active angiotensin II. Thus, CPA6 plays a possible role in the regulation of neuropeptides in the extracellular environment within the olfactory bulb where it is highly expresse
Probab=99.97 E-value=9.3e-31 Score=218.53 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=99.1
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc-----cccC--------C
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG-----NNRC--------S 67 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~--------n 67 (149)
+||.|||.|++||+||+|+.++++++++|+. .++.++++|++++|+|||++||||++++ .||+ +
T Consensus 49 ~k~~i~i~~giHarEwi~~~~~~~~i~~Ll~~~~~d~~~~~lL~~~~~~ivP~vNPDGy~ys~~~~r~wrknR~~~~~~~ 128 (300)
T cd03872 49 YKKAVWIDCGIHAREWIGPAFCQWFVKEALNSYQTDPAMKKMLNQLYFYVMPVFNVDGYHYSWTNDRFWRKTRSKNSRYQ 128 (300)
T ss_pred CCCeEEEecccccccccCHHHHHHHHHHHHHhccCChHHHHHHhhCeEEEEeeecCCcceeeeccchhhhccCCCCCCCC
Confidence 6899999999999999999999999999985 4788999999999999999999999874 2443 4
Q ss_pred CCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 68 LTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 68 ~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
|.||||||||. ++.|+++||++|+++++.++. .++.+|+|+||+++
T Consensus 129 c~GVDLNRNf~~~w~~~g~s~~Pcs~~Y~G~~pfSEpEt~al~~~~~~~~----------------~~i~~~ls~Hsyg~ 192 (300)
T cd03872 129 CRGVDANRNWKVKWCDEGASLHPCDDTYCGPFPESEPEVKAVAQFLRKHR----------------KHVRAYLSFHAYAQ 192 (300)
T ss_pred ccccccccccCcccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHhCC----------------ccceEEEEEccCCc
Confidence 89999999997 466899999999988877531 47899999999999
Q ss_pred cC
Q psy17663 130 PA 131 (149)
Q Consensus 130 ~~ 131 (149)
.+
T Consensus 193 ~i 194 (300)
T cd03872 193 ML 194 (300)
T ss_pred EE
Confidence 98
No 11
>cd06227 Peptidase_M14-like_2 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.97 E-value=1.2e-30 Score=215.13 Aligned_cols=110 Identities=24% Similarity=0.201 Sum_probs=97.5
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcC-------CHHHHHhhhCcEEEEEeeeCCCccccc-----cccCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGD-------SAQAKELREKFIFKLIPMLNPDGVIVG-----NNRCSLTGR 71 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~-------~~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~n~~Gv 71 (149)
+|++|||.||+||+||+|++++++|+++|+.. ++.++++|++++|+|||++||||+++. .||+|++||
T Consensus 51 ~k~~i~i~agiHarE~i~~~~~l~li~~L~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~wR~N~~GV 130 (272)
T cd06227 51 KKVKALLLFGEHARELISPETGLHLLSNLCGELAETFDWGDLLKNILDNFDLKIIPNENPDGRKKVESGNYCLRENENGV 130 (272)
T ss_pred CCCEEEEECCccCCchhhHHHHHHHHHHHHHhcccccchhHHHHHHHhcCcEEEEeccCCchheeEeccCcccccCCccc
Confidence 69999999999999999999999999999863 256899999999999999999999873 489999999
Q ss_pred CCCCCCC----------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 72 DLNRQYR----------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 72 DLNRnw~----------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
||||||+ ++.|+++||++|+++++.+ .++.+|+|+|++++.+
T Consensus 131 DLNRNf~~~w~~~~~~~~~~~y~G~~~~sEpEt~av~~~~~~------------------~~~~~~i~~Hs~~~~i 188 (272)
T cd06227 131 DLNRNYGADWGFKEDDYEDEEYSGPAPFSEPETRVLRDLLTS------------------FSPDVFLSVHSGTLAL 188 (272)
T ss_pred cccccCCcccccCCCCccccccCCCCCCCcHHHHHHHHHHHh------------------CCCeEEEEeccCCCEE
Confidence 9999994 2467899999998877654 4579999999999877
No 12
>cd06247 M14_CPO Peptidase M14 carboxypeptidase (CP) O (CPO, also known as metallocarboxypeptidase C; EC 3.4.17.) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPO has not been well characterized as yet, and little is known about it. Based on modeling studies, CPO has been suggested to have specificity for acidic residues rather than aliphatic/aromatic residues as in A-like enzymes or basic residues as in B-like enzymes. It remains to be demonstrated that CPO is functional as an MCP.
Probab=99.96 E-value=5.3e-30 Score=213.78 Aligned_cols=113 Identities=27% Similarity=0.290 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc-----cccC--------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG-----NNRC-------- 66 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~-------- 66 (149)
++||.|||.|++||+||+|+.+++++++.|++ .++.++++|++++|+|||++||||+++. .||+
T Consensus 50 ~~k~~i~i~~giHarEwi~~~~~l~~i~~Ll~~y~~d~~~~~ll~~~~i~ivP~~NPDGy~ys~~~~r~wRknr~~~~~~ 129 (298)
T cd06247 50 KPKKIIWMDCGIHAREWISPAFCQWFVKEILQNYKTDPILRKVLKNVDFYVLPVLNIDGYIYTWTTDRLWRKNRSPHNNG 129 (298)
T ss_pred CCCcEEEEeccccccccccHHHHHHHHHHHHHHhccCHHHHHHHhcCeEEEEeeecCCcceEEecccceecccCCCCCCC
Confidence 46899999999999999999999999999986 4688899999999999999999999974 2453
Q ss_pred CCCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 67 SLTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 67 n~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
+|.||||||||. ++.|+++||++|+++++... +.++.+|||+|+++
T Consensus 130 ~c~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~pfSEpEt~ai~~~~~~~----------------~~~i~~~l~~Hsyg 193 (298)
T cd06247 130 TCYGVDLNRNFNSQWCSIGASRNCRSNIFCGTGPESEPETKAVARLIESK----------------KSDILCYLTIHSYG 193 (298)
T ss_pred CccccccccCCCCccccCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhc----------------CcceEEEEEeccCC
Confidence 578999999996 25689999999998887753 15688999999999
Q ss_pred ccC
Q psy17663 129 EPA 131 (149)
Q Consensus 129 ~~~ 131 (149)
+.+
T Consensus 194 ~~i 196 (298)
T cd06247 194 QLI 196 (298)
T ss_pred CeE
Confidence 998
No 13
>cd06248 M14_CPA_CPB_like Peptidase M14 Carboxypeptidase A/B-like subfamily: This is one of two main M14 carboxypeptidase subfamilies, defined by sequence and structural homology, the other being N/E. Carboxypeptidases (CPs) hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Majority of the proteins in this subfamily have not been characterized as yet. The A/B enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; the proenzymes are called procarboxypeptidases. These enzymes exhibit distinct substrate specificity pattern; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5,
Probab=99.96 E-value=3.9e-30 Score=214.77 Aligned_cols=115 Identities=30% Similarity=0.347 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc-----ccC--------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN-----NRC-------- 66 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~-----~R~-------- 66 (149)
.+||.|||.|++||+||+|+++++++++.|+. .++.++++|++++|+|||++||||++++. ||+
T Consensus 52 ~~k~~v~i~~giHarE~~~~~~~l~~~~~L~~~~~~d~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wRknr~~~~~~ 131 (304)
T cd06248 52 GSKPAIVIHGTVHAREWISTMTVEYLAYQLLTGYGSDATVTALLDKFDFYIIPVVNPDGFVYTQTSDRLWRKNRQPTSGS 131 (304)
T ss_pred CCCcEEEEECCcCcCccccHHHHHHHHHHHHHhhccCHHHHHHHHhCcEEEEeeecCchhhhhccchhhhhhcCCCCCCC
Confidence 46899999999999999999999999999986 36889999999999999999999998742 454
Q ss_pred CCCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 67 SLTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 67 n~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
+|.||||||||+ ++.++++||++|+++++.++..+ .++.+|+|+||++
T Consensus 132 ~~~GVDLNRNf~~~w~~~g~s~~p~s~~Y~G~~~~sEpEt~av~~~~~~~~~~--------------~~~~~~l~~Hs~~ 197 (304)
T cd06248 132 SCVGTDLNRNWPYKWDGGGSSTNPCSETYRGESPGDAPEAKALAAFLNKLAEG--------------QGIVGYIDWHSYS 197 (304)
T ss_pred CceeecCCCCCCCcccCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhcccc--------------CceEEEEEeccCc
Confidence 368999999996 24588999999999888875322 5799999999999
Q ss_pred ccC
Q psy17663 129 EPA 131 (149)
Q Consensus 129 ~~~ 131 (149)
+.+
T Consensus 198 ~~i 200 (304)
T cd06248 198 QLI 200 (304)
T ss_pred ceE
Confidence 877
No 14
>cd03870 M14_CPA Peptidase M14 Carboxypeptidase (CP) A (CPA) belongs to the A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPA enzymes generally favor hydrophobic residues. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase A (PCPA) is produced by the exocrine pancreas and stored as a stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. This subfamily includes CPA1, CPA2 and CPA4 forms. Within these A forms, there are slightly different specificities, with CPA1 preferring aliphatic and small aromatic residues, and CPA2 p
Probab=99.96 E-value=8.4e-30 Score=212.77 Aligned_cols=111 Identities=18% Similarity=0.155 Sum_probs=98.0
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc-----ccC--------C
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN-----NRC--------S 67 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~-----~R~--------n 67 (149)
.||.|||.|++||+||+|+.+++++++.|+. .++.++++|++++|+|||++||||+++++ ||+ |
T Consensus 52 ~kp~v~i~~giHarE~i~~~~~l~~~~~L~~~~~~d~~~~~lLd~~~i~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~~ 131 (301)
T cd03870 52 NRPAIWIDAGIHSREWITQATGVWFAKKITEDYGQDPSFTAILDSMDIFLEIVTNPDGYVFTHSQNRLWRKTRSVTSGSL 131 (301)
T ss_pred CCceEEEeccccccchhhHHHHHHHHHHHHHhcccCHHHHHHHHhCcEEEEeeecCchhhheecccceeecCCCCCCCCC
Confidence 6899999999999999999999999999986 46889999999999999999999998752 453 6
Q ss_pred CCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 68 LTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 68 ~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
|.||||||||+ ++.|+++||++|+++++.. . .++.+|+|+||+++
T Consensus 132 ~~GVDLNRNf~~~w~~~g~s~~p~~~~Y~G~~pfSEpEt~av~~~~~~---~--------------~~~~~~l~lHS~g~ 194 (301)
T cd03870 132 CVGVDPNRNWDAGFGGAGASSNPCSETYHGPYANSEVEVKSIVDFVKS---H--------------GNFKAFISIHSYSQ 194 (301)
T ss_pred ccccccccCCCcccCcCCCCCCCCccccCCCCCCccHHHHHHHHHHhh---C--------------CCeEEEEEeccCCc
Confidence 89999999995 3567999999998887754 1 47899999999999
Q ss_pred cC
Q psy17663 130 PA 131 (149)
Q Consensus 130 ~~ 131 (149)
.+
T Consensus 195 ~i 196 (301)
T cd03870 195 LL 196 (301)
T ss_pred eE
Confidence 98
No 15
>cd06246 M14_CPB2 Peptidase M14 Carboxypeptidase (CP) B2 (CPB2, also known as plasma carboxypeptidase B, carboxypeptidase U, and CPU), belongs to the carboxpeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPB2 enzyme displays B-like activity; it only cleaves the basic residues lysine or arginine. It is produced and secreted by the liver as the inactive precursor, procarboxypeptidase U or PCPB2, commonly referred to as thrombin-activatable fibrinolysis inhibitor (TAFI). It circulates in plasma as a zymogen bound to plasminogen, and the active enzyme, TAFIa, inhibits fibrinolysis. It is highly regulated, increased TAFI concentrations are thought to increase the risk of thrombosis and coronary artery disease by reducing fibrinolytic activity whil
Probab=99.96 E-value=9.8e-30 Score=212.23 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc-----cccCC-------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG-----NNRCS------- 67 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~n------- 67 (149)
+.||.|||.|++||+||+|+.++++++++|+. .++.++++|++++|+|+|++||||+++. .||+|
T Consensus 51 ~~k~~v~i~~giHarE~i~~~~~l~~i~~Ll~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~r~wRknr~~~~~~ 130 (300)
T cd06246 51 TAKNAIWIDCGIHAREWISPAFCLWFVGHATQFYGIDGQMTNLLRHMDFYIMPVMNVDGYDYTWKKNRMWRKNRSFYANS 130 (300)
T ss_pred CCCCeEEEecccCccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHhCeEEEEEeecCCceeEEEeccceeecCCCCCCCC
Confidence 46899999999999999999999999999975 4788999999999999999999999864 25544
Q ss_pred -CCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 68 -LTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 68 -~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
|.||||||||+ ++.|+++||++|+.+++... ...+.+|||+|+++
T Consensus 131 ~~~GVDLNRNf~~~w~~~g~s~~p~~~~y~G~~p~SEpEt~av~~~~~~~----------------~~~i~~~is~Hs~g 194 (300)
T cd06246 131 HCIGTDLNRNFDAKWCCEGASSSSCSETYCGPYPESEPEVKAVASFLRRH----------------INQIKAYISMHSYS 194 (300)
T ss_pred CccCcccccccccccCCCCCCCCCCCCCcCCCCCCccHHHHHHHHHHHhC----------------CcceeEEEEeccCC
Confidence 89999999997 35688999999988877653 14689999999999
Q ss_pred ccC
Q psy17663 129 EPA 131 (149)
Q Consensus 129 ~~~ 131 (149)
+.+
T Consensus 195 ~~i 197 (300)
T cd06246 195 QMI 197 (300)
T ss_pred cEE
Confidence 988
No 16
>cd06229 M14_Endopeptidase_I Peptidase M14-like domain of Gamma-D-glutamyl-L-diamino acid endopeptidase 1 (also known as Gamma-D-glutamyl-meso-diaminopimelate peptidase I, and Endopeptidase I (ENP1); EC 3.4.19.11). ENP1 is a member of the M14 family of metallocarboxypeptidases (MCPs). However it has an exceptional type of activity of hydrolyzing the gamma-D-Glu-(L)meso-diaminopimelic acid (gamma-D-Glu-Dap) bond of L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid and L-Ala-gamma-D-Glu-(L)meso-diaminopimelic acid(L)-D-Ala peptides. ENP1has a different substrate specificity and cellular role than MpaA (MpaA does not belong to this group). ENP1 hydrolyzes the gamma-D-Glu-Dap bond of MurNAc-tripeptide and MurNAc-tetrapeptide, as well as the amide bond of free tripeptide and tetrapeptide . ENP1 is active on spore cortex peptidoglycan, and is produced at stage IV of sporulation in forespore and spore integuments.
Probab=99.96 E-value=1e-29 Score=207.15 Aligned_cols=112 Identities=22% Similarity=0.325 Sum_probs=96.3
Q ss_pred CCCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcC--------CHHHHHhhhCcEEEEEeeeCCCcccccc----------
Q psy17663 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLTGD--------SAQAKELREKFIFKLIPMLNPDGVIVGN---------- 63 (149)
Q Consensus 2 ~~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~--------~~~~~~ll~~~~~~ivP~~NPDG~~~g~---------- 63 (149)
++++|.|+|+|++||+||+|+.++++++++|+.. +..+++||++++|+|||++||||+++..
T Consensus 13 g~~~~~v~i~agiHarE~~~~~~~l~~i~~L~~~~~~~~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~~~~ 92 (255)
T cd06229 13 GNGPKTVFYNASFHAREWITTLLLMKFIEEYARAYENNEKLGGYDLRELLENVTICFVPMVNPDGVEIVQNGPYAIRNYY 92 (255)
T ss_pred cCCCceEEEECCccccchhhHHHHHHHHHHHHHHhccCccccchhHHHHHhcCeEEEEeCccCCchheeeecccccccch
Confidence 5567999999999999999999999999999852 3457999999999999999999998732
Q ss_pred ---------------ccCCCCCCCCCCCCC-------------------CCCCCCCccHHHHHHHHHHHHhcCCCccccc
Q psy17663 64 ---------------NRCSLTGRDLNRQYR-------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTG 109 (149)
Q Consensus 64 ---------------~R~n~~GvDLNRnw~-------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~ 109 (149)
||.||.||||||||+ ++.|+++||++|+.+++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~n~~GVDLNRNf~~~w~~~~~~s~~p~~~~y~G~~p~SEpEtral~~~~~~------------ 160 (255)
T cd06229 93 LELLVINAGSINFKEWKANARGVDLNRNFPAGWEKEKAGPKAPAPRNYKGEQPLSEPETIALAELTRE------------ 160 (255)
T ss_pred hhhHHhhcCCCcccccccCCcccccCCCCCCCCCcCCCCCCCCCccCcCCCCCCCchhHHHHHHHHHh------------
Confidence 368999999999984 1367899999998877654
Q ss_pred ccccccceeEEEEeecCCCccC
Q psy17663 110 KMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 110 ~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++.++||+|++++.+
T Consensus 161 ------~~~~~~i~~Hs~g~~i 176 (255)
T cd06229 161 ------NRFRAVLAYHSQGEEI 176 (255)
T ss_pred ------CCCeEEEEecCCCCeE
Confidence 4678999999999887
No 17
>cd06226 M14_CPT_like Peptidase M14-like domain of an uncharacterized group of Peptidase M14 Carboxypeptidase (CP) T (CPT)-like proteins. This group belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues and C-terminal positively charged residues. However, CPT does not belong to this CPT-like group.
Probab=99.96 E-value=2.3e-29 Score=209.53 Aligned_cols=126 Identities=22% Similarity=0.250 Sum_probs=101.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc----cccCC--------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG----NNRCS-------- 67 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g----~~R~n-------- 67 (149)
.+||.|||.|+|||+||+|+.+++++++.|+. .++.++++|++++|+||||+||||+++. .||+|
T Consensus 40 ~~kp~v~i~~~iHarE~ig~~~~l~~i~~L~~~~~~d~~v~~lL~~~~i~ivP~~NPDG~~~~~~~~~wRkNr~~~~~~~ 119 (293)
T cd06226 40 GPKPVFFIMGAIHAREYTTAELVLRFAEDLLEGYGTDADATWLLDYHEIHVVPIVNPDGRKIAEQGLSQRKNANTSGGSN 119 (293)
T ss_pred CCCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhcCeEEEEecccCCcceeeccCcceeccCCCCCCCC
Confidence 46999999999999999999999999999986 3788999999999999999999999864 25555
Q ss_pred ----CCCCCCCCCCC-------------------CCCCCCCccHHHHHHHHHHHHhcCCCccccccccc-ccceeEEEEe
Q psy17663 68 ----LTGRDLNRQYR-------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRF-RKSGIVTTAT 123 (149)
Q Consensus 68 ----~~GvDLNRnw~-------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~-~~~~~~~~iD 123 (149)
+.||||||||+ ++.|+++||++|+++++.+.... |...++.++ +...+.+|||
T Consensus 120 ~~~n~~GVDLNRNf~~~w~~~~~~~~~p~~~~y~G~~p~SEpEt~Av~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~ 196 (293)
T cd06226 120 CSGSSYGVDLNRNYSFGWGGAGASSGDPCSETYRGPAPGSEPETAALEDYIRGLFPD---QRGPGDTDPAPDDTTGVYLD 196 (293)
T ss_pred ccccccccccccCCCCcCCcCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhcccc---ccccccccccccccceEEEE
Confidence 47999999986 24588999999999888875322 222222221 1124899999
Q ss_pred ecCCCccC
Q psy17663 124 MHSKQEPA 131 (149)
Q Consensus 124 lHs~s~~~ 131 (149)
+|++++.+
T Consensus 197 ~HS~g~~i 204 (293)
T cd06226 197 IHSYSNLV 204 (293)
T ss_pred eccCCCeE
Confidence 99999998
No 18
>cd03871 M14_CPB Peptidase M14 Carboxypeptidase B (CPB) belongs to the carboxypeptidase A/B subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Carboxypeptidase B (CPB) enzymes only cleave the basic residues lysine or arginine. A/B subfamily enzymes are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The procarboxypeptidase B (PCPB) is produced by the exocrine pancreas and stored as stable zymogen in the pancreatic granules until secretion into the digestive tract occurs. PCPB has been reported to be a good serum marker for the diagnosis of acute pancreatitis and graft rejection in pancreas transplant recipients.
Probab=99.96 E-value=2.1e-29 Score=210.38 Aligned_cols=113 Identities=28% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc-----ccC--------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN-----NRC-------- 66 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~-----~R~-------- 66 (149)
++||.|||+|++||+||+|+.+++++++.|+. .++.++++|++++|+|||++||||+++.. ||+
T Consensus 51 ~~kp~v~i~~giHarE~i~~~~~l~~i~~l~~~y~~d~~~~~lL~~~~~~ivP~~NPDG~~~s~~~~r~wrknr~~~~~~ 130 (300)
T cd03871 51 VNKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREAIMTELLDKLDFYVLPVLNIDGYIYTWTKNRMWRKTRSTNAGS 130 (300)
T ss_pred CCCCeEEEeccccccccccHHHHHHHHHHHHHHccCCHHHHHHHHcCeEEEEEeecCCcCeeeeccCHHHHHhcCCCCCC
Confidence 45899999999999999999999999999985 46888999999999999999999999752 443
Q ss_pred CCCCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 67 SLTGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 67 n~~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
+|.||||||||+ ++.|+++||++|+++++... ...+.+|+|+||++
T Consensus 131 ~c~GVDLNRNf~~~w~~~g~s~~pc~~~Y~G~~p~SEpEt~Al~~~~~~~----------------~~~~~~~l~~HSyg 194 (300)
T cd03871 131 SCIGTDPNRNFNAGWCTVGASRNPCDETYCGSAPESEKETKALADFIRNN----------------LSSIKAYLTIHSYS 194 (300)
T ss_pred CccccccCcCCCCccCCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHhc----------------CcceeEEEEeccCc
Confidence 268999999996 36689999999988887653 15789999999999
Q ss_pred ccC
Q psy17663 129 EPA 131 (149)
Q Consensus 129 ~~~ 131 (149)
+.+
T Consensus 195 ~~i 197 (300)
T cd03871 195 QML 197 (300)
T ss_pred cEE
Confidence 998
No 19
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=99.96 E-value=2.4e-29 Score=214.67 Aligned_cols=110 Identities=15% Similarity=0.256 Sum_probs=98.9
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc--------ccCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN--------NRCSLTGRD 72 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~--------~R~n~~GvD 72 (149)
+||.|+++|+|||+||+|.+++++++++|+. .++.+++||++++|+|+|++||||++++. +|.||+|||
T Consensus 52 ~kp~v~~~~giHg~E~ig~e~~l~l~~~L~~~y~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~~r~na~GvD 131 (363)
T cd06245 52 EEPKIRFVAGIHGNAPVGTELLLALAEFLCMNYGKNPAVTKLIDRTRIVIVPSLNPDGREKAQEKQCTSKEGHTNAHGKD 131 (363)
T ss_pred CCCEEEEECCccCCcHHHHHHHHHHHHHHHHHccCCHHHHHHHhCCEEEEEeccCCchHHHeecCCCcccCCCCCccccc
Confidence 5899999999999999999999999999985 57889999999999999999999999864 378999999
Q ss_pred CCCCCC----CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 73 LNRQYR----TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 73 LNRnw~----~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
|||||+ ++.+.++||++|+.+++++ ..++++++|||+++.+
T Consensus 132 LNRNf~~~~~g~~~~sepEt~Av~~~~~~------------------~~f~l~~~lH~~~~~~ 176 (363)
T cd06245 132 LDTDFTSNASNMSADVQPETKAIIDNLIS------------------KDFTLSVALDGGSVVA 176 (363)
T ss_pred CCCCCCcccCCCCCCCcHHHHHHHHHHHh------------------CCceEEEEEcCCcEEE
Confidence 999997 3567899999998777654 3679999999999987
No 20
>PF00246 Peptidase_M14: Zinc carboxypeptidase This is family M14 in the peptidase classification. ; InterPro: IPR000834 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of sequences contain a diverse range of gene families, which include metallopeptidases belonging to MEROPS peptidase family M14 (carboxypeptidase A, clan MC), subfamilies M14A and M14B. The carboxypeptidase A family can be divided into two subfamilies: carboxypeptidase H (regulatory) and carboxypeptidase A (digestive) []. Members of the H family have longer C-termini than those of family A [], and carboxypeptidase M (a member of the H family) is bound to the membrane by a glycosylphosphatidylinositol anchor, unlike the majority of the M14 family, which are soluble []. The zinc ligands have been determined as two histidines and a glutamate, and the catalytic residue has been identified as a C-terminal glutamate, but these do not form the characteristic metalloprotease HEXXH motif [, ]. Members of the carboxypeptidase A family are synthesised as inactive molecules with propeptides that must be cleaved to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Other examples of protein families in this entry include: Intron maturase Putative mitochondrial processing peptidase alpha subunit Superoxide dismutase [Mn] (1.15.1.1 from EC) Asparagine synthetase [glutamine-hydrolysing] 3 (6.3.5.4 from EC) Glucose-6-phosphate isomerase (5.3.1.9 from EC) ; GO: 0004181 metallocarboxypeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 3DGV_A 3OSL_C 3D4U_A 2NSM_A 1QMU_A 1H8L_A 2PJ2_A 2PJ9_A 1ZG8_A 1Z5R_A ....
Probab=99.96 E-value=7.6e-30 Score=208.29 Aligned_cols=111 Identities=26% Similarity=0.337 Sum_probs=95.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc--CCHHHHHhhhCcEEEEEeeeCCCccccccc--------cCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG--DSAQAKELREKFIFKLIPMLNPDGVIVGNN--------RCSLTGRD 72 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~--~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~--------R~n~~GvD 72 (149)
.+||.|+|+|++||+|++|+++++++++.|++ +++.+++||++++|+||||+||||+.++.. |+|+.|||
T Consensus 44 ~~k~~v~i~~~~Hg~E~~g~~~~l~~~~~L~~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~w~~~R~n~~GvD 123 (279)
T PF00246_consen 44 PGKPTVLIIAGIHGNEWIGSEALLYLIEELLSGYDDPEVKELLDNVVIYIIPMVNPDGYEYGTSGDRGWRKNRSNANGVD 123 (279)
T ss_dssp TTSEEEEEEE-SSTT-THHHHHHHHHHHHHHHHTTSHHHHHHHHHEEEEEES-SSHHHHHHHHHT-TTCCSTSSBTTS--
T ss_pred ccccceEEEecccccccCchHHHHHHHHHhhccccchhhhhhcccceEEEEeeecccceeeeeecccccccccccccccc
Confidence 57999999999999999999999999999998 789999999999999999999999998643 99999999
Q ss_pred CCCCCCCC------------------CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 73 LNRQYRTV------------------IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 73 LNRnw~~~------------------~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
|||||... .++++||++|+++++++ .++.+++|+|++++..
T Consensus 124 lNRnf~~~w~~~~~~~~~~~~~y~g~~~~sepEt~al~~~~~~------------------~~~~~~id~H~~~~~~ 182 (279)
T PF00246_consen 124 LNRNFPYQWNEEGSSSNPCSETYRGPAPFSEPETRALRNLIQD------------------WNPDFFIDFHSGGNAI 182 (279)
T ss_dssp GGGSSSSSTTSSSSBSSTTSTTB--SSTTTSHHHHHHHHHHHH------------------TTEEEEEEEEESSSEE
T ss_pred cccccCcccccccccCCCCCcccCCCcchhhhHHHHHHHHHhh------------------cceeEEEeccccccce
Confidence 99999643 35689999998777654 6889999999999877
No 21
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=99.96 E-value=3e-29 Score=214.13 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=98.0
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc----------cccCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG----------NNRCSLTG 70 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g----------~~R~n~~G 70 (149)
+||.|+++|+|||+||+|++++++++++|++ .++.++++|++++|+|+|++||||+++. .+|.||+|
T Consensus 51 ~kp~v~~~~~iH~~E~ig~~~~l~l~~~L~~~y~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~~~~~~~R~n~~G 130 (372)
T cd03868 51 GEPMFKYVGNMHGDETVGRQVLIYLAQYLLENYGGDERVTELVNTTDIYLMPSMNPDGFERSQEGDCSCGGYGGRENANN 130 (372)
T ss_pred CCCeEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCHHHHHHHhCCEEEEEeeeCCchHHhhcccCccccCCCccCCCCC
Confidence 5899999999999999999999999999986 4788999999999999999999999873 15889999
Q ss_pred CCCCCCCCC-------CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 71 RDLNRQYRT-------VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 71 vDLNRnw~~-------~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
|||||||+. +.++++||++|+.+++++ .++++++|+|++++..
T Consensus 131 vDLNRnf~~~~~~~~~~~~~sepEt~av~~~~~~------------------~~~~l~~~lH~~~~~~ 180 (372)
T cd03868 131 VDLNRNFPDQFEGKLQRLSERQPETVAMMKWIRS------------------NPFVLSGNLHGGSVVA 180 (372)
T ss_pred ccCCCCCCcccCCcCCCCCCCCHHHHHHHHHHhh------------------CCcEEEEEccCccEEE
Confidence 999999963 367899999998777654 4689999999998887
No 22
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=99.96 E-value=4.4e-29 Score=207.28 Aligned_cols=112 Identities=24% Similarity=0.272 Sum_probs=96.9
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc-------cc-------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN-------NR------- 65 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~-------~R------- 65 (149)
+.||.|||.|++||+||+|+.+++++++.|+. .++.++++|++++|+|||++||||+++.. ||
T Consensus 52 ~~kp~i~i~~~iH~~E~~g~~~~l~~i~~L~~~~~~d~~~~~lL~~~~i~ivP~~NPDG~~~~~~~~~~~~wrkn~~~~~ 131 (295)
T cd03859 52 ENKPEVLYTSTHHAREWLSLEMAIYLMHYLLENYGKDPRIQNLVDNRELWFVPVVNPDGYEYDETTGGYRSWRKNRRDNS 131 (295)
T ss_pred CCCCEEEEECCcCccchhhHHHHHHHHHHHHHhhccCHHHHHHHhcCeEEEEeeeCCCcceEEeeccCccceeccCCCCC
Confidence 46899999999999999999999999999986 36889999999999999999999998642 33
Q ss_pred ---CCCCCCCCCCCCC--------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEE
Q psy17663 66 ---CSLTGRDLNRQYR--------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTA 122 (149)
Q Consensus 66 ---~n~~GvDLNRnw~--------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~i 122 (149)
.||.||||||||+ ++.|+++||++|+++++.+. .++.+++
T Consensus 132 ~~~~~~~GvDLNRNf~~~w~~~~~g~s~~p~~~~y~G~~p~sepEt~av~~~~~~~-----------------~~~~~~l 194 (295)
T cd03859 132 GDISSSDGVDLNRNYGYKWGYDSGGSSNDPSSETYRGPSAFSEPETQAIRDFVESH-----------------KNIKTAL 194 (295)
T ss_pred CCcCcceeecCCCCCCcccCCCCCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhC-----------------CCeEEEE
Confidence 3578999999995 23578999999988877641 3789999
Q ss_pred eecCCCccC
Q psy17663 123 TMHSKQEPA 131 (149)
Q Consensus 123 DlHs~s~~~ 131 (149)
|+|++++.+
T Consensus 195 ~~Hs~g~~i 203 (295)
T cd03859 195 NYHTYSNLW 203 (295)
T ss_pred EeecCCceE
Confidence 999999987
No 23
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=99.96 E-value=5.7e-29 Score=212.09 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=98.6
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc----CCHHHHHhhhCcEEEEEeeeCCCccccc--------cccCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG----DSAQAKELREKFIFKLIPMLNPDGVIVG--------NNRCSLTGR 71 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~----~~~~~~~ll~~~~~~ivP~~NPDG~~~g--------~~R~n~~Gv 71 (149)
+||.|+|.|++||+||+|++++++++++|+. .++.+++||++++|+|+|++||||+++. .+|.|+.|+
T Consensus 51 ~kp~v~i~agiH~~E~~g~~~~~~l~~~L~~~~~~~d~~~~~ll~~~~~~ivP~~NPDG~~~~~~~~~~w~~~R~n~~Gv 130 (374)
T cd03858 51 GEPEFKYVGNMHGNEVVGRELLLRLAQYLCENYGAGDPRITRLVDNTRIHIMPSMNPDGYEKAAEGDCGGLTGRYNANGV 130 (374)
T ss_pred CCceEEEeccccCCchhHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEcccCCchhhhhcccCCcccccCCCCcce
Confidence 6899999999999999999999999999985 4788999999999999999999999884 368999999
Q ss_pred CCCCCCCC---------CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 72 DLNRQYRT---------VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 72 DLNRnw~~---------~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
||||||+. +.++++||++|+++++.+ .++.+++|+|++++.+
T Consensus 131 DLNRnf~~~~~~~~~~G~~~~sepEt~al~~~~~~------------------~~~~~~i~~Hs~~~~~ 181 (374)
T cd03858 131 DLNRNFPDLFFTNYRSSDNGPRQPETKAVMNWIKS------------------IPFVLSANLHGGALVA 181 (374)
T ss_pred ecccCCCcccccccccCCCcccCHHHHHHHHHHhh------------------CCceEEEEccCCceEE
Confidence 99999974 467899999998777654 5789999999998777
No 24
>smart00631 Zn_pept Zn_pept.
Probab=99.96 E-value=1.1e-28 Score=202.67 Aligned_cols=112 Identities=25% Similarity=0.287 Sum_probs=97.3
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcC---CHHHHHhhhCcEEEEEeeeCCCcccccc-----ccC------CC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGD---SAQAKELREKFIFKLIPMLNPDGVIVGN-----NRC------SL 68 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~---~~~~~~ll~~~~~~ivP~~NPDG~~~g~-----~R~------n~ 68 (149)
..||.|||+|++||+|++|+++++++++.|+.. ++.++.+|++++|+|||++||||++++. ||+ |+
T Consensus 47 ~~k~~v~i~a~~Hg~E~~g~~~~~~~i~~L~~~~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~~~~~~~wr~~r~~~~~~ 126 (277)
T smart00631 47 HNKPAIFIDAGIHAREWIGPATALYLINQLLENYGRDPRITKLLDKTDIYIVPVLNPDGYEYTHTGDRLWRKNRSPNSNC 126 (277)
T ss_pred CCCcEEEEECCccccccccHHHHHHHHHHHHHhcccCHHHHHHHHcCcEEEEEeecCchhhheecccccccCCCCCCCCC
Confidence 358999999999999999999999999999863 7888999999999999999999999642 354 69
Q ss_pred CCCCCCCCCCC---------------CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 69 TGRDLNRQYRT---------------VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 69 ~GvDLNRnw~~---------------~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.||||||||+. +.++++||++|+++++.+. .++.+++|+|++++.+
T Consensus 127 ~GvDLNRnf~~~w~~~~~p~~~~y~G~~~~sepEt~ai~~~~~~~-----------------~~~~~~id~Hs~~~~i 187 (277)
T smart00631 127 RGVDLNRNFPFHWGKTGNPCSETYAGPSPFSEPETKAVRDFIRSN-----------------RRFVLYIDLHSYSQLI 187 (277)
T ss_pred cCcccCCCCCCCCCCCCCCCCCCcCCCCCCCcHHHHHHHHHHHhc-----------------CCeeEEEEeccCCcEE
Confidence 99999999983 5568999999988776652 2789999999998776
No 25
>cd06228 Peptidase_M14-like_3 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.96 E-value=1.3e-28 Score=208.02 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---------------CCHHHHHhhhCcEEEEEeeeCCCccccc-----
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---------------DSAQAKELREKFIFKLIPMLNPDGVIVG----- 62 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---------------~~~~~~~ll~~~~~~ivP~~NPDG~~~g----- 62 (149)
+.||.|||.|++||+||+++.++++++++|+. .++.++++|+ ++|+|||++||||+++.
T Consensus 26 ~~kp~V~i~ggiHAREwis~~~~l~~i~~Ll~~y~~~~~~~yg~~~~~d~~v~~lL~-~~i~IvP~vNPDGy~~s~~~~r 104 (332)
T cd06228 26 TSRYGALFIGGVHARERGSPDNLIYFVSDLLNARKAGRGIKYGGRTYTAADVKAILD-AGIVVFPLVNPDGRAHDQTANS 104 (332)
T ss_pred CCCCEEEEEccccccchhhHHHHHHHHHHHHHhhhccccccccccccccHHHHHHHh-CeEEEEEeecCcchhheeccch
Confidence 46899999999999999999999999999986 2567899999 99999999999999984
Q ss_pred cccC-----------CCCCCCCCCCCC----------------------------CCCCCCCccHHHHHHHHHHHHhcCC
Q psy17663 63 NNRC-----------SLTGRDLNRQYR----------------------------TVIRETYPPVWHTKLLIRRKTKKKP 103 (149)
Q Consensus 63 ~~R~-----------n~~GvDLNRnw~----------------------------~~~~~~~PE~~a~~~li~~l~~~~p 103 (149)
.||+ +|.||||||||. ++.|+++||++|++.++.. .
T Consensus 105 ~WRKNr~~~~~~~~~~c~GVDLNRNf~~~W~~~~~~~~~~~~~g~S~~Pcse~Y~G~~pfSEPET~av~~~~~~---~-- 179 (332)
T cd06228 105 CWRKNRNPASAGPNPSSVGVDINRNFDFLWDFQKYFDPGASRSVASTDPASETFHGTAAFSEPETRNVVWVMDT---F-- 179 (332)
T ss_pred hhhccCCCCcccccCcccccccCCCCCCCcCcccccccccccCCCCCCCCccccCCCCCCccHHHHHHHHHHhc---c--
Confidence 2554 478999999973 2368999999998777654 1
Q ss_pred CcccccccccccceeEEEEeecCCCccC
Q psy17663 104 VQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++.+|||+||+++.+
T Consensus 180 ------------~~~~~yls~HSygq~i 195 (332)
T cd06228 180 ------------KNIRWFVDLHSYGGDV 195 (332)
T ss_pred ------------CCeEEEEEeccCCceE
Confidence 4689999999999998
No 26
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=99.95 E-value=1.6e-28 Score=210.48 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=97.3
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc-------cccCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG-------NNRCSLTGRDL 73 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g-------~~R~n~~GvDL 73 (149)
+||.|++.|+|||+||+|++++++++++|+. .++.++++|++++|+|+|++||||++++ .+|.||+||||
T Consensus 55 ~~P~v~~~~~iHg~E~ig~~~~l~l~~~L~~~y~~d~~i~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~R~N~~GvDL 134 (376)
T cd03866 55 GIPEFKYVANMHGNEVVGRELLLHLIDYLVTSYGSDPVITRLLNSTRIHIMPSMNPDGFEASKPDCYYSVGRYNKNGYDL 134 (376)
T ss_pred CCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCEEEEEeccCCchhhhcccccccccccccCCCccc
Confidence 5899999999999999999999999999985 5789999999999999999999999985 26999999999
Q ss_pred CCCCCC----CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 74 NRQYRT----VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 74 NRnw~~----~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
||||+. ....++||++|+.+++++ ..+++++|+|++++.+
T Consensus 135 NRnf~~~w~~~~~~sepEt~al~~~~~~------------------~~~~l~~~~H~~~~~~ 178 (376)
T cd03866 135 NRNFPDAFEENNEQRQPETRAVMEWLKS------------------ETFVLSANLHGGALVA 178 (376)
T ss_pred CcCchhhhccCCCCCcHHHHHHHHHHHh------------------cCcEEEEEccCCceEE
Confidence 999982 123489999998776643 5689999999999986
No 27
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=99.95 E-value=1.8e-28 Score=210.16 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=97.1
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc--------ccCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN--------NRCSLTGRD 72 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~--------~R~n~~GvD 72 (149)
+||.|+++|+|||+||+|++++++++++|++ .|+.+++||++++|+|+|++||||+++.. +|.|++|||
T Consensus 56 ~kp~v~~~g~iHg~E~ig~~~~l~li~~L~~~y~~d~~v~~ll~~~~i~IvP~~NPDG~e~~~~~~~~~~~~R~n~~GVD 135 (375)
T cd03863 56 GEPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEKSQEGDRGGTVGRNNSNNYD 135 (375)
T ss_pred CCCeEEEEccccCCcHHHHHHHHHHHHHHHHhccCCHHHHHHHhCCEEEEEeccCCchHHheecCCcccccccccCCCcc
Confidence 6999999999999999999999999999985 47889999999999999999999998853 589999999
Q ss_pred CCCCCCC----CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 73 LNRQYRT----VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 73 LNRnw~~----~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
|||||+. .+..++||++|+.+++++ ..+++++++||+++.+
T Consensus 136 LNRNfp~~~~~~~~~~EpEt~Av~~~~~~------------------~~f~l~~~lHsg~~~~ 180 (375)
T cd03863 136 LNRNFPDQFFQVTDPPQPETLAVMSWLKS------------------YPFVLSANLHGGSLVV 180 (375)
T ss_pred cccCCccccccCCCCCcHHHHHHHHHHhh------------------CCceEEEEecCCCEEE
Confidence 9999973 234569999998776553 4689999999998887
No 28
>KOG3641|consensus
Probab=99.95 E-value=1.5e-28 Score=216.31 Aligned_cols=117 Identities=44% Similarity=0.806 Sum_probs=110.9
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
..+|.|+|.+++|++|+.++|+|.+++++|+..++.++.|++.+.|.|+||+||||+..|++||...|.||||-|.+|++
T Consensus 427 ~~~~~IfLSaRVHpgeTnsSwvmkGilefl~s~~p~aq~LRe~~vFKI~PMLNPDGV~~GnyRCSL~G~DLNR~w~tps~ 506 (650)
T KOG3641|consen 427 APRPVIFLSARVHPGETNSSWVMKGILEFLVSNSPLAQGLRESYVFKIVPMLNPDGVIVGNYRCSLMGLDLNRMWSTPSP 506 (650)
T ss_pred CCcceEEEecccCCCCCcHHHHHHHHHHHhhcCCcHHHhhhhheeEecccccCCCceecccceeccccchhhhhcCCCCc
Confidence 46899999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++|+++++|+++.++... | ...+.+|+|+|||++|.
T Consensus 507 ~shPsi~~~k~li~~l~~~-~-----------~~~p~~Y~DlHgHSqK~ 543 (650)
T KOG3641|consen 507 ASHPSIYAVKQLIQQLSNV-P-----------HSRPLGYVDLHGHSQKV 543 (650)
T ss_pred ccchhHHhHHHHHhhhhcc-c-----------ccCceEeeccccccccc
Confidence 9999999999999998765 1 26799999999999999
No 29
>cd06239 Peptidase_M14-like_1_2 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=3.2e-28 Score=196.80 Aligned_cols=108 Identities=23% Similarity=0.337 Sum_probs=96.3
Q ss_pred CCCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcC-CHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCC
Q psy17663 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLTGD-SAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTV 80 (149)
Q Consensus 2 ~~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~-~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~ 80 (149)
+++||+|+|.|++||+|+.|+++++.++++|+.+ ++.++++|++++|+||||+||||++. .+|.|+.|+||||+|..
T Consensus 30 g~g~~~vli~agiHG~E~~g~~all~ll~~L~~~~~~~~~~ll~~~~v~iiP~lNPDG~~~-~~R~N~~GvDLNRdf~~- 107 (231)
T cd06239 30 GSGKIKILLWSQMHGNESTTTKALLDLLNFLGTSKDQEAKKILDEVTLVIIPMLNPDGAEA-YTRVNANGVDLNRDAQD- 107 (231)
T ss_pred cCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCEEEEEeccCccHHHH-cccCCCcCCcCCCCCCC-
Confidence 5679999999999999999999999999999864 44458999999999999999999999 58999999999999985
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 81 IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 81 ~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
.++||++++++++.. ..+++++|+|++++.+
T Consensus 108 --~s~PEtr~l~~~~~~------------------~~pd~~iDlH~~~~~y 138 (231)
T cd06239 108 --LSQPESRLLRDVYDG------------------FQPDFCFNLHDQRTIY 138 (231)
T ss_pred --CChHHHHHHHHHHHh------------------cCCEEEEEECCCCCcc
Confidence 469999998776654 4579999999999986
No 30
>cd03860 M14_CP_A-B_like The Peptidase M14 Carboxypeptidase (CP) A/B subfamily is one of two main M14 CP subfamilies defined by sequence and structural homology, the other being the N/E subfamily. CPs hydrolyze single, C-terminal amino acids from polypeptide chains. They have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by a globular N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. There are nine members in the A/B family: CPA1, CPA2, CPA3, CPA4, CPA5, CPA6, CPB, CPO and CPU. CPA1, CPA2 and CPB are produced by the
Probab=99.95 E-value=3.3e-28 Score=201.72 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=96.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCC-HHHHHhhhCcEEEEEeeeCCCccccc-----cccC--------CC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDS-AQAKELREKFIFKLIPMLNPDGVIVG-----NNRC--------SL 68 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~-~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~--------n~ 68 (149)
..||.|||+|++||+|++|+.+++++++.|+.+. +.++++|++++|+||||+||||++++ .||+ +|
T Consensus 47 ~~k~~v~i~~~~Hg~E~~g~~~~~~~~~~L~~~~~~~~~~ll~~~~i~iiP~~NPDG~~~~~~~~~~wrknr~~~~~~~~ 126 (294)
T cd03860 47 SNKPAIFIDAGIHAREWISPATALYIINQLVESYDPEVTDLLDNYDWYILPVANPDGYEYTHTTDRLWRKNRSPNSGGGC 126 (294)
T ss_pred CCCcEEEEECCcCcCccccHHHHHHHHHHHHHccCHHHHHHHHcCeEEEEeeecCCchhhhccccchhcccCCCCCCCCc
Confidence 4589999999999999999999999999998753 67899999999999999999999864 2343 47
Q ss_pred CCCCCCCCCC------------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 69 TGRDLNRQYR------------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 69 ~GvDLNRnw~------------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
.||||||||+ ++.++++||++|+++++.++. .++.+++|+|++++.
T Consensus 127 ~GvDLNRnf~~~w~~~~~~~~p~~~~y~G~~~~sepEt~al~~~~~~~~----------------~~~~~~ld~Hs~~~~ 190 (294)
T cd03860 127 VGVDLNRNFDYHWGGGGASSDPCSETYAGPSAFSEPETRAVRDFLLSLR----------------GRIKAYLSLHSYGQL 190 (294)
T ss_pred eeeccCCCCCCCCccCCCCCCCCCCCccCCCCCchHHHHHHHHHHHhcc----------------ccEEEEEEeccCCce
Confidence 8999999996 245789999999888776531 378999999999987
Q ss_pred C
Q psy17663 131 A 131 (149)
Q Consensus 131 ~ 131 (149)
+
T Consensus 191 i 191 (294)
T cd03860 191 I 191 (294)
T ss_pred E
Confidence 7
No 31
>cd06242 Peptidase_M14-like_1_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=5e-28 Score=199.21 Aligned_cols=105 Identities=19% Similarity=0.164 Sum_probs=93.0
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
++||+|||.|+|||+|+.|+++++.+++.|+.+. ...++|++++|+|+|++||||+++. +|.||.|+||||||..
T Consensus 52 ~~kp~V~i~~giHg~E~~g~~a~l~ll~~L~~~~-~~~~lL~~~~i~ivP~~NPDG~~~~-~R~na~g~DlNRD~~~--- 126 (268)
T cd06242 52 SKKLRVWLQGGVHGNEPAGDEAALALLGKLDNNP-KWASVLEKIDIIVLPRYNPDGSAYF-QRTLATGYDPNRDHTK--- 126 (268)
T ss_pred CCCCEEEEECCcCCCCHHHHHHHHHHHHHHHhCc-hHHHHHhcCeEEEEeccCcchhhhc-cccCCcCcccCCCCCc---
Confidence 4689999999999999999999999999998743 3458999999999999999999995 7999999999999985
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
.++||++++++++.. +.+.+++|+|.+++.
T Consensus 127 ~~~pEtra~~~~~~~------------------~~P~v~iD~He~~~~ 156 (268)
T cd06242 127 LARQQTRDIKEAFSK------------------FNPHIAIDAHEYGAF 156 (268)
T ss_pred ccCHHHHHHHHHHHH------------------hCCcEEEEeccCCcc
Confidence 468999998776553 567999999999886
No 32
>cd06238 Peptidase_M14-like_1_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.95 E-value=4.3e-28 Score=200.04 Aligned_cols=107 Identities=20% Similarity=0.130 Sum_probs=92.7
Q ss_pred CCCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc-CCHHHHHhhhCcEEEEEeeeCCCcccc-cc----------------
Q psy17663 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-DSAQAKELREKFIFKLIPMLNPDGVIV-GN---------------- 63 (149)
Q Consensus 2 ~~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~-~~~~~~~ll~~~~~~ivP~~NPDG~~~-g~---------------- 63 (149)
++.||.|||.|+|||+||+|++++++++++|+. +++.++++|++++|+|+|++||||+++ .+
T Consensus 45 ~~~~~~v~i~~~iH~~E~~g~~~~l~l~~~L~~~~~~~~~~ll~~~~i~i~P~~NPDG~~r~~~w~~~~~~~~~~~d~~~ 124 (271)
T cd06238 45 SDQPVVVWLGYSVHGNEISGTEAALLTAYHLAAAQGDEIEALLDNAVVLIDPMQNPDGRDRFVNWYNSNRGMVPSADPQD 124 (271)
T ss_pred ccCCcEEEEECCcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHhcCEEEEEeccCCCHHHHHHHhhhhccCCccccchhh
Confidence 356899999999999999999999999999975 578889999999999999999999984 21
Q ss_pred ---------ccCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 64 ---------NRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 64 ---------~R~n~~GvDLNRnw~~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
.|.||.|+||||||. +.++||++++.+++.+ +.+.+++|+|+++.
T Consensus 125 r~~~~~wp~~R~n~~g~DLNRD~~---~~s~pEtra~~~~~~~------------------~~p~~~~D~H~~g~ 178 (271)
T cd06238 125 REHNEPWPGGRTNHYWFDLNRDWL---PLTQPESRGRLAAYHE------------------WRPNVVVDFHEMGT 178 (271)
T ss_pred hhcccCCccccccccCcccccccc---cccCHHHHHHHHHHHh------------------cCCeEEEEeccCCC
Confidence 378999999999998 4679999997665443 56799999999763
No 33
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=99.95 E-value=6e-28 Score=207.89 Aligned_cols=110 Identities=20% Similarity=0.310 Sum_probs=96.6
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc----CCHHHHHhhhCcEEEEEeeeCCCccccc-----------cccCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG----DSAQAKELREKFIFKLIPMLNPDGVIVG-----------NNRCSL 68 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~----~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----------~~R~n~ 68 (149)
.||.|+++|+|||+|++|.+++++++++|++ .++.+++||++++|+|+|++||||+++. .+|.|+
T Consensus 51 ~kp~v~~~g~iHg~E~ig~e~ll~l~~~L~~~y~~~d~~v~~lL~~~~i~ivP~~NPDG~e~~~~~~~~~~~~~~~R~Na 130 (392)
T cd03864 51 LEPEFKYVGNMHGNEVLGRELLIQLSEFLCEEYRNGNERITRLIQDTRIHILPSMNPDGYEVAARQGPEFNGYLVGRNNA 130 (392)
T ss_pred CCCEEEEEcccCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCeEEEEeeeCCchHHhhhccCCCcCccccccccc
Confidence 5899999999999999999999999999985 3788999999999999999999999763 369999
Q ss_pred CCCCCCCCCCCC-----------------------CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeec
Q psy17663 69 TGRDLNRQYRTV-----------------------IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMH 125 (149)
Q Consensus 69 ~GvDLNRnw~~~-----------------------~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlH 125 (149)
+||||||||+.. .+.++||++|+.+++++ ..+++++++|
T Consensus 131 ~GVDLNRNFp~~~~~~~~~~~~~g~~~~~P~~~~~~~~~epET~Av~~~~~~------------------~~fvls~nlH 192 (392)
T cd03864 131 NGVDLNRNFPDLNTLMYYNEKYGGPNHHLPLPDNWKSQVEPETLAVIQWMQN------------------YNFVLSANLH 192 (392)
T ss_pred cCcccccCCCcccccchhhhccCCccccCCCccccccccCHHHHHHHHHHHh------------------cCcEEEEEcc
Confidence 999999999842 14679999997766653 5789999999
Q ss_pred CCCccC
Q psy17663 126 SKQEPA 131 (149)
Q Consensus 126 s~s~~~ 131 (149)
|++...
T Consensus 193 gG~~v~ 198 (392)
T cd03864 193 GGAVVA 198 (392)
T ss_pred CCceee
Confidence 999887
No 34
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPZ is a secreted Zn-dependent enzyme whose biological function is largely unknown. Unlike other members of the N/E subfamily, CPZ has a bipartite structure, which consists of an N-terminal cysteine-rich domain (CRD) whose sequence is similar to Wnt-binding proteins, and a C-terminal CP catalytic domain that removes C-terminal Arg residues from substrates. CPZ is enriched in the extracellular matrix and is widely distributed during early embryogenesis. That the CRD of CPZ can bind to Wnt4 suggests that CPZ plays a role in Wnt signaling.
Probab=99.95 E-value=5.9e-28 Score=207.98 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=95.5
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc----CCHHHHHhhhCcEEEEEeeeCCCccccc-----------cccCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG----DSAQAKELREKFIFKLIPMLNPDGVIVG-----------NNRCSL 68 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~----~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----------~~R~n~ 68 (149)
.||.|++.|+|||+||+|++++++++++|++ .++.++++|++++|+|+|++||||+++. .+|.||
T Consensus 51 ~kp~v~i~~giHg~E~ig~~~~~~l~~~L~~~~~~~d~~v~~ll~~~~i~ivP~~NPDG~e~~~~~~~~~~~wr~~R~n~ 130 (395)
T cd03867 51 LEPEVKYIGNMHGNEVLGRELLIYLAQFLCSEYLLGNQRIQTLINTTRIHLLPSMNPDGYEAAASEGAGYNGWTNGRQNA 130 (395)
T ss_pred cCCeEEEEccccCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHhhCcEEEEEeccCCchHHhhhhcCccccccccCCcCC
Confidence 4899999999999999999999999999985 4788999999999999999999999862 248899
Q ss_pred CCCCCCCCCCC-------------------CCC------CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEe
Q psy17663 69 TGRDLNRQYRT-------------------VIR------ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTAT 123 (149)
Q Consensus 69 ~GvDLNRnw~~-------------------~~~------~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iD 123 (149)
+||||||||+. |.| .++||++|+.+++++ ..++++++
T Consensus 131 ~GvDLNRNf~~~~~~~~~~~~~~g~~~~~~p~p~~~~~~~sepEt~Av~~~~~~------------------~~~~l~~s 192 (395)
T cd03867 131 QNIDLNRNFPDLTSEVYRRRRQRGARTDHIPIPDSYWFGKVAPETKAVMKWMRS------------------IPFVLSAS 192 (395)
T ss_pred CCcccccCCCcchhhhcchhhcccccccCCCCccccccCccCHHHHHHHHHHhh------------------CCceEEEE
Confidence 99999999973 122 469999998777654 35899999
Q ss_pred ecCCCccC
Q psy17663 124 MHSKQEPA 131 (149)
Q Consensus 124 lHs~s~~~ 131 (149)
+||+++.+
T Consensus 193 ~Hs~~~~~ 200 (395)
T cd03867 193 LHGGDLVV 200 (395)
T ss_pred ccCcceeE
Confidence 99999987
No 35
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.95 E-value=1.1e-27 Score=204.22 Aligned_cols=112 Identities=22% Similarity=0.294 Sum_probs=97.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCcccccc------ccCC------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGN------NRCS------ 67 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~------~R~n------ 67 (149)
.+||.|||.|+|||+||+|++++++++++|++ +++.++++|++++|+|||++||||+++.. ||+|
T Consensus 53 ~~Kp~I~i~~giHarEwig~~~~l~li~~Ll~~y~~d~~i~~lLd~~~~~IvP~vNPDG~e~~~~~~~r~wRk~r~~~~~ 132 (360)
T cd06905 53 REKPAFWIDANIHATEVTGSAVALYVIQTLLNGYGSDPEVTRLLDGYTFYILPRLNPDGAEQALTHPPYVRRSSRRPYPY 132 (360)
T ss_pred CCCcEEEEecCCCCCchHHHHHHHHHHHHHHHhccCCHHHHHHHhcCeEEEEeeeCCChheEEeeccccccccCCCCccc
Confidence 36999999999999999999999999999986 47899999999999999999999998642 2221
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q psy17663 68 --------------------------------------------------------------------------LTGRDL 73 (149)
Q Consensus 68 --------------------------------------------------------------------------~~GvDL 73 (149)
+.||||
T Consensus 133 ~~~~~g~~~~D~n~D~~~~~mr~~d~~g~w~~~~~~p~~m~~~~~~~~~g~~y~~~~eg~~~~~dg~~~~~~~~~~GvDl 212 (360)
T cd06905 133 PDRIDGLYPEDIDGDGLILQMRVKDPCGAWKVSERDPRIMVRREPDEFGGTYYRLLPEGLIRNYDGYNIKIAPPLEGLDF 212 (360)
T ss_pred ccccccccccccCccchhheeeccccccccccccccchhhccccccccCceeeeecccccccccccccccccccccCCCc
Confidence 159999
Q ss_pred CCCCC------------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 74 NRQYR------------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 74 NRnw~------------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
||||+ ++.|+|+||++|+.+++.. . .++.+||++|++++.+
T Consensus 213 NRNf~~~W~~~~~~~y~G~~p~SEpEt~av~~~~~~---~--------------~~i~~~is~Hsyg~~i 265 (360)
T cd06905 213 NRNFPHDWRPEGEQYGAGPFPFSEPETRAVVEFWTD---H--------------PNINGFISYHTYSGVI 265 (360)
T ss_pred ccCcCCCCCCCCCcCCCCCCCCChHHHHHHHHHHhc---C--------------CCeEEEEEecCCcCee
Confidence 99986 5789999999998888764 1 5789999999999999
No 36
>cd03862 Peptidase_M14-like_7 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.95 E-value=2.4e-27 Score=195.79 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=95.9
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTV 80 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~ 80 (149)
+||.|+|+||+||+||+|+.++++++++|+. .++..++++++++|+|||++||||+.. .+|.|++||||||||+..
T Consensus 23 ~~p~v~i~~giHg~E~ig~~~~l~~l~~L~~~~~~d~~~~~ll~~~~i~ivP~vNPdG~~~-~~R~n~~GVDLNRNfp~~ 101 (273)
T cd03862 23 KAPVLGLVGGVHGLERIGTQVLLAFLESLLERLRWDKLLQELLEKVRLVFLPLVNPVGMAL-KTRSNGNGVDLMRNAPVD 101 (273)
T ss_pred CCCEEEEEcCcCCCcHHHHHHHHHHHHHHHHhccccHHHHHHHhCCeEEEEeccCcCHHHh-cccCCCCCcccCCCCCCC
Confidence 5799999999999999999999999999985 367889999999999999999999998 479999999999999621
Q ss_pred -------------------------CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 81 -------------------------IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 81 -------------------------~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
.+.++||++++.+++++.... .++.+|+|+||+
T Consensus 102 ~~~~~~~~~~G~~~~p~~~~Y~G~~~~~sEpEt~al~~~~~~~~~~--------------~~~~~~ld~HSg 159 (273)
T cd03862 102 AEDKPPFLVGGQRLSPRLPWYRGKNGAGMELEAQALCRFVRELLFE--------------SPFSIALDCHSG 159 (273)
T ss_pred ccccccccccCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhccc--------------CCeEEEEEECCC
Confidence 158999999998888765322 578999999995
No 37
>cd06243 Peptidase_M14-like_1_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.95 E-value=2.8e-27 Score=191.82 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=92.6
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc-CCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-DSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~-~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~ 81 (149)
++||+|||.|++||+|+.|+++++.++++|+. .++.++++|++++|+|+|++||||++++ +|.|+.|+||||||..
T Consensus 27 ~~~p~v~i~~giHG~E~~G~~a~l~ll~~L~~~~~~~~~~lL~~~~i~ivP~~NPDG~~~~-~R~n~~g~DlNRd~~~-- 103 (236)
T cd06243 27 ANRPTVLLVGTQHGDEPAGREALLIIARDLAFGEDEELVPLLHQTTVLFVPTANPDGREAD-TRSNADGIDINRDHLL-- 103 (236)
T ss_pred CCCCEEEEECCcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHhcceEEEEeCcCccHhhcC-CcCCCCCcccCCCCCC--
Confidence 46899999999999999999999999999975 5778899999999999999999999996 7999999999999985
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 82 RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 82 ~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
.++||++++++++.+ +.+.+++|+|++
T Consensus 104 -~~~pEt~al~~~~~~------------------~~p~~~iDlHe~ 130 (236)
T cd06243 104 -LNTPEAQALASVLRD------------------YRPDVVVDAHEY 130 (236)
T ss_pred -CCCHHHHHHHHHHHh------------------cCCEEEEEeCCC
Confidence 458999987665543 567999999998
No 38
>cd03857 Peptidase_M14-like_1 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.94 E-value=8.2e-27 Score=187.24 Aligned_cols=103 Identities=23% Similarity=0.315 Sum_probs=92.8
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRE 83 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~ 83 (149)
+||+|||.|++||+|+.|+++++.++++|+..+...+++|++++|+|+|++||||+++. +|.|+.|+||||||...
T Consensus 30 ~k~~v~i~~giHg~E~~g~~a~~~l~~~l~~~~~~~~~ll~~~~i~ivP~~NPDG~~~~-~R~n~~g~DLNRd~~~~--- 105 (226)
T cd03857 30 GKPRVWIDAQIHGNESAGSDALLELLRQLASASDEEAKMLENIVIVLIPRANPDGAALF-TRENANGLDLNRDFLKL--- 105 (226)
T ss_pred CCcEEEEECCcCCCCchHHHHHHHHHHHHHhCCHHHHHHHhCCEEEEEeccCCChHHhc-cccCCCcccCCCCCCCc---
Confidence 78999999999999999999999999999876666689999999999999999999994 89999999999999974
Q ss_pred CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 84 TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 84 ~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
++||++++++++.. +.+.+++|+|+++
T Consensus 106 ~~pEt~~~~~~~~~------------------~~p~~~iDlH~~~ 132 (226)
T cd03857 106 TQPETRAVREVFIE------------------WKPQFFIDLHEYG 132 (226)
T ss_pred CCHHHHHHHHHHHH------------------cCCeEEEEcCCCC
Confidence 59999997776554 5668999999983
No 39
>cd06244 Peptidase_M14-like_1_7 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.94 E-value=6.8e-27 Score=192.48 Aligned_cols=106 Identities=28% Similarity=0.358 Sum_probs=92.9
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcC-----------------CHHHHHhhhCcEEEEEeeeCCCccccccccC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGD-----------------SAQAKELREKFIFKLIPMLNPDGVIVGNNRC 66 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~-----------------~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~ 66 (149)
.|+.|++.++|||+|+.|+++++.++++|+.. ++.+++||++++|+|+|++||||++++ +|.
T Consensus 51 ~~k~v~~~~~iHg~E~~g~~a~l~ll~~L~~~~~~~~~~~~~~~~~~~~~~~i~~lL~~~~i~i~P~~NPDG~~~~-~R~ 129 (268)
T cd06244 51 DYKPPIINNNIHPDETPGIDAQTELIEELAQEDEIEFNTTDADGNEVTETLDVDDLLEKVIFLFNVTENPDGRVAG-TRE 129 (268)
T ss_pred ccCeEEEEeCcCCCCHHHHHHHHHHHHHHHhcccccccccccccccccCCHHHHHHHhcCEEEEEecccCCcceee-eec
Confidence 46777788999999999999999999999853 678899999999999999999999995 899
Q ss_pred CCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 67 SLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 67 n~~GvDLNRnw~~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
|++|+||||||.. .++||++++++++.. +.+.+++|+|++.+..
T Consensus 130 Na~G~DLNRD~~~---~sqpEt~av~~~~~~------------------w~P~~~~dlHg~~~~~ 173 (268)
T cd06244 130 NANGFDLNRDNSF---QTQPETQAIVALIAE------------------WNPASFLDLHGYVEGF 173 (268)
T ss_pred CCCccccCCCCCc---ccCHHHHHHHHHHHH------------------hCCeEEEEeCCCCCce
Confidence 9999999999985 579999997766554 5679999999988433
No 40
>cd06241 Peptidase_M14-like_1_4 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. Th
Probab=99.94 E-value=5.4e-27 Score=192.87 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=91.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccc--------------cccCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVG--------------NNRCSL 68 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g--------------~~R~n~ 68 (149)
++||+|||+|||||+|+.|+++++.+++.|+.... .++|++++|+|||++||||++++ .||.|+
T Consensus 46 ~~kp~v~i~agiH~~E~~G~~a~~~ll~~L~~~~~--~~ll~~~~i~ivP~~NpDG~~~~~~~~r~~q~gp~~~~~R~na 123 (266)
T cd06241 46 SGKPVVLVQAGIHAGEIDGKDAGLMLLRDLADGKK--DALLDKVVLVFIPVFNVDGHERRSPYNRTNQNGPEEYGWRGNA 123 (266)
T ss_pred cCCCEEEEeCCcCCCCchHHHHHHHHHHHHHhcch--HHHHhCCEEEEEeCCCccHHHhcccccccccCCCCccCceecc
Confidence 47999999999999999999999999999986432 28999999999999999999863 389999
Q ss_pred CCCCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 69 TGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 69 ~GvDLNRnw~~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
+|+||||||.+. ++||++++++++.. +++++|+|+|++.+.
T Consensus 124 ~g~DLNRdf~~~---~~pEtra~~~~~~~------------------~~p~~~iD~H~~~g~ 164 (266)
T cd06241 124 RNLNLNRDFIKL---DAPEMRAFAKLFNK------------------WNPDLFIDNHVTDGA 164 (266)
T ss_pred cceecCCCCccc---CCHHHHHHHHHHHH------------------hCCCEEEEeccCCCc
Confidence 999999999964 48999998776553 578999999988664
No 41
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Proteins belonging to this subgroup include CP-like protein X1 (CPX1), CP-like protein X2 (CPX2), and aortic CP-like protein (ACLP) and its isoform adipocyte enhancer binding protein-1 (AEBP1). AEBP1 is a truncated form of ACLP, which may arise from alternative splicing of the gene. These proteins are inactive towards standard CP substrates because they lack one or more critical active site and substrate-binding residues that are necessary for activity. They may function as binding proteins rather than as active CPs or display catalytic activity toward other substrates. Pro
Probab=99.94 E-value=1.5e-26 Score=199.85 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=94.9
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc----CCHHHHHhhhCcEEEEEeeeCCCccccc-----------cccCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG----DSAQAKELREKFIFKLIPMLNPDGVIVG-----------NNRCSL 68 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~----~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----------~~R~n~ 68 (149)
+||.|+++|+|||+||+|++++++++++|++ .++.+++||++++|+|+|++||||+++. ..|.||
T Consensus 55 ~kP~v~~~g~iHgrE~ig~~~~l~li~~L~~~y~~~d~~v~~Ll~~~~i~IvP~~NPDG~e~s~~~~~~~~~Wrk~R~na 134 (405)
T cd03869 55 GEPEFRYVAGMHGNEVLGRELLLLLMQFLCQEYLAGNPRVVHLVEETRIHLLPSMNPDGYEKAYEAGSELGGWALGRWTE 134 (405)
T ss_pred CCCeEEEEcccCCCcHHHHHHHHHHHHHHHHhhhcCCHHHHHHHhcCeEEEEeeeCCchhhhhhhcCccccccccCccCC
Confidence 6899999999999999999999999999974 4788999999999999999999999863 137889
Q ss_pred CCCCCCCCCCC-------------------------------CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccce
Q psy17663 69 TGRDLNRQYRT-------------------------------VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSG 117 (149)
Q Consensus 69 ~GvDLNRnw~~-------------------------------~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~ 117 (149)
+||||||||+. +.++++|||+|+.+++++ ..
T Consensus 135 ~GVDLNRNFp~~~~~~W~~~~~~~~~~~~~~~~~Pc~~~Y~G~~~~sEPET~Av~~~i~~------------------~~ 196 (405)
T cd03869 135 EGIDINHNFPDLNTILWEAEDKKKVPRKVPNHHIPIPEWYLSENATVAPETRAVIAWMEK------------------IP 196 (405)
T ss_pred CCccccCCCcccccccccccccccccccccccCCCCccccCCCCCCCcHHHHHHHHHHHh------------------CC
Confidence 99999999983 236789999998776654 46
Q ss_pred eEEEEeecCCCccC
Q psy17663 118 IVTTATMHSKQEPA 131 (149)
Q Consensus 118 ~~~~iDlHs~s~~~ 131 (149)
+++-+++|+.+...
T Consensus 197 FvLSanlHgG~lv~ 210 (405)
T cd03869 197 FVLGANLQGGELVV 210 (405)
T ss_pred ceEEEEecCccEEE
Confidence 78888999877664
No 42
>cd00596 Peptidase_M14_like The M14 family of metallocarboxypeptidases (MCPs) are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring
Probab=99.94 E-value=1.6e-26 Score=179.64 Aligned_cols=106 Identities=24% Similarity=0.266 Sum_probs=93.5
Q ss_pred EEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCC---CCCC
Q psy17663 8 IVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTV---IRET 84 (149)
Q Consensus 8 V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~---~~~~ 84 (149)
|||.|++||+|+.|.++++.+++.|+...+..+.++++.+|+|+|++||||++.+++|.|..|+||||||+.. .+.+
T Consensus 1 v~i~ag~Hg~E~~g~~~~~~~~~~l~~~~~~~~~l~~~~~i~iiP~~NPdG~~~~~~R~n~~g~DlNR~f~~~~~~~~~~ 80 (196)
T cd00596 1 VLIIAGIHGNETIGVEAALALLRRLLSNYGRDTKLLENGRLLVVPVLNPDGYEAVNWRKNANGVDLNRNFPGLWGKGPLS 80 (196)
T ss_pred CEEECCcCCCcHHHHHHHHHHHHHHHHcCcchHHHHhCCeEEEEeCcccccceeeeEEeCCCCcCccCCCCCcccCCCCC
Confidence 6899999999999999999999999875444589999999999999999999996689999999999999976 4678
Q ss_pred CccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 85 YPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 85 ~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+||++++..+++. .++++++|+|+++...
T Consensus 81 ~~e~~~~~~~~~~------------------~~~~~~idlH~~~~~~ 109 (196)
T cd00596 81 EPETRALAELIQQ------------------RKVDLYIDLHSGSLGV 109 (196)
T ss_pred cHHHHHHHHHHHh------------------CCceEEEEEecCCceE
Confidence 9999997776654 4689999999998655
No 43
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=99.93 E-value=1.1e-25 Score=194.40 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=94.7
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc----CCHHHHHhhhCcEEEEEeeeCCCccccc-----------cccCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG----DSAQAKELREKFIFKLIPMLNPDGVIVG-----------NNRCSL 68 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~----~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----------~~R~n~ 68 (149)
+||.|+++|+|||+||+|.+++++++++|++ .++.+++||++++|+|+|++||||+++. .+|.||
T Consensus 55 ~kP~v~i~g~iHg~E~ig~~~~l~l~~~L~~~y~~~d~~v~~LLd~~~i~IvP~~NPDG~e~~~~~~~~~~~w~~~R~Na 134 (402)
T cd03865 55 GEPEFKYIGNMHGNEAVGRELLIYLAQYLCNEYQKGNETIINLIHSTRIHIMPSLNPDGFEKAASQPGELKDWFVGRSNA 134 (402)
T ss_pred CCCEEEEECCcCCCcHHHHHHHHHHHHHHHHhcccCCHHHHHHHhcCEEEEEeeeCCchHHhhhhcCccccchhhhcccc
Confidence 6999999999999999999999999999985 3788999999999999999999999863 249999
Q ss_pred CCCCCCCCCCCCC---------------------------CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEE
Q psy17663 69 TGRDLNRQYRTVI---------------------------RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTT 121 (149)
Q Consensus 69 ~GvDLNRnw~~~~---------------------------~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~ 121 (149)
+||||||||+..+ ...+|||+|+.+++++ ..+++.
T Consensus 135 ~GvDLNRNFp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pEt~Avm~w~~~------------------~~Fvls 196 (402)
T cd03865 135 QGIDLNRNFPDLDRIVYVNEREGGPNNHLLKNMKKAVDENTKLAPETKAVIHWIMD------------------IPFVLS 196 (402)
T ss_pred cCcccCCCCCcccchhhhhhccCCCccccccccccccccccCCChHHHHHHHHHHh------------------CCcEEE
Confidence 9999999998531 1358999997655543 578999
Q ss_pred EeecCCCccC
Q psy17663 122 ATMHSKQEPA 131 (149)
Q Consensus 122 iDlHs~s~~~ 131 (149)
++|||.+...
T Consensus 197 anlHgG~lva 206 (402)
T cd03865 197 ANLHGGDLVA 206 (402)
T ss_pred EEccCccEEE
Confidence 9999998776
No 44
>cd06904 M14_MpaA_like Peptidase M14-like domain of Escherichia coli Murein Peptide Amidase A (MpaA) and related proteins. MpaA is a member of the M14 family of metallocarboxypeptidases (MCPs), however it has an exceptional type of activity, it hydrolyzes the gamma-D-glutamyl-meso-diaminopimelic acid (gamma-D-Glu-Dap) bond in murein peptides. MpaA is specific for cleavage of the gamma-D-Glu-Dap bond of free murein tripeptide; it may also cleave murein tetrapeptide. MpaA has a different substrate specificity and cellular role than endopeptidase I, ENP1 (ENP1 does not belong to this group). MpaA works on free murein peptide in the recycling pathway.
Probab=99.92 E-value=3.4e-25 Score=172.16 Aligned_cols=100 Identities=25% Similarity=0.391 Sum_probs=86.1
Q ss_pred EEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCC---------
Q psy17663 8 IVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYR--------- 78 (149)
Q Consensus 8 V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~--------- 78 (149)
|+|+|++||+|+.|..+++.+++.|.. ..|++++|+|||++||||+.. .+|+|+.|+||||||+
T Consensus 1 vli~agiHG~E~~g~~~~~~l~~~l~~------~~l~~~~i~ivP~~NPdG~~~-~~R~n~~gvDLNRnFp~~~~~~~~~ 73 (178)
T cd06904 1 VLIIGGIHGDEPASVSDLEELLRILPG------LILRGLSWYVIPVLNPDGLLR-ATRCNANGVDLNRNFPTKDWPPGAS 73 (178)
T ss_pred CEEEeccCCCCHHHHHHHHHHHHHHHH------HhhcCCeEEEEeCcCccHHhh-CcccCCCCcChhhcCCccccccCCC
Confidence 689999999999999999999999974 237789999999999999999 4899999999999986
Q ss_pred ------CCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccCc
Q psy17663 79 ------TVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPAR 132 (149)
Q Consensus 79 ------~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~~ 132 (149)
++.+.++||++++.+++.+ .+++++||+|+.....+
T Consensus 74 ~~~~~~G~~~~sepEt~al~~~~~~------------------~~~~~~idlHs~~~~~~ 115 (178)
T cd06904 74 RYRRYPGPKPGSEPESRALMDLIER------------------FKPDVVVSFHAPLGVLD 115 (178)
T ss_pred cccccCCCCCCCCHHHHHHHHHHHh------------------cCCeEEEEeCCCCCeec
Confidence 3457789999998776654 46799999999876663
No 45
>cd06231 Peptidase_M14-like_4 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=99.90 E-value=6.5e-24 Score=172.10 Aligned_cols=102 Identities=23% Similarity=0.304 Sum_probs=88.3
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRE 83 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~ 83 (149)
+||+|+|+||+||+|+.|.++++.+++.+.. .++++++|+|+||+||||++.+ +|.|+.|+||||+|... .
T Consensus 41 ~~p~vlI~gGiHG~E~~G~~a~l~~l~~l~~------~~l~~~~i~ivP~vNPdG~~~~-~R~n~~g~DLNR~F~~~--~ 111 (236)
T cd06231 41 DLPRVLITAGIHGDEPAGPLGALEFLRAAAL------ELAQDVNLSVYPCINPSGFEAI-TRWNRNGIDPNRSFRSE--S 111 (236)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHHHHHH------HHhcCCeEEEEECcChhHHhcC-ccCCCCCccccCCCCCC--C
Confidence 6899999999999999999999999998853 4788999999999999999995 79999999999999963 3
Q ss_pred CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 84 TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 84 ~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
++||++++.+++..+ ..++++++|||++...
T Consensus 112 ~~~E~~al~~~~~~~----------------~~~~~~~IDLH~~~~~ 142 (236)
T cd06231 112 PSPEVRLLMEWLRRL----------------GAAFDLHIDLHEDTES 142 (236)
T ss_pred CCHHHHHHHHHHHHh----------------CCCcEEEEEeCCCCCC
Confidence 579999977766543 1478999999998844
No 46
>cd06240 Peptidase_M14-like_1_3 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. T
Probab=99.90 E-value=6.5e-24 Score=175.41 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=89.0
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc-CCHHHHHhhhCcEEEEEeeeCCCcccccc--c---------------
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-DSAQAKELREKFIFKLIPMLNPDGVIVGN--N--------------- 64 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~-~~~~~~~ll~~~~~~ivP~~NPDG~~~g~--~--------------- 64 (149)
.+||.|||.|+|||+|+.|+++++.++++|+. +++.++++|++++|+|+|++||||+++.. .
T Consensus 55 ~~kp~v~i~~~iHg~E~~g~ea~l~l~~~L~~~~d~~~~~lLd~~~i~i~P~~NPDG~er~~~w~~~~~~~~~~~~~~~~ 134 (273)
T cd06240 55 EGKPIVWIDGGLHSTETGGPQMLMELAYRLATEEDPEIKRILDNVIVLIVPVANPDGRDRVVDWYMRTLGPPKRDRSPLP 134 (273)
T ss_pred cCCCEEEEECCcCCCchHHHHHHHHHHHHHHhcCCHHHHHHHhcCEEEEEeCcCCCHHHHhhhhhhhccCCcccCCCCcc
Confidence 46999999999999999999999999999975 68899999999999999999999998731 1
Q ss_pred --cCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 65 --RCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 65 --R~n~~GvDLNRnw~~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
|.+..|+||||||.. ..+||+++..+++.. +.+.+++|+|..+
T Consensus 135 ~~~~~y~g~DlNRD~~~---~~~~et~~~~~~~~~------------------w~P~v~~D~He~g 179 (273)
T cd06240 135 PLYGKYVGHDNNRDGYM---NQQETTNNSRKLFLE------------------WHPQIMYDLHQSG 179 (273)
T ss_pred cccCccCCcCCCcccch---hcCHHHHHHHHHHHh------------------cCCcEEEEcccCC
Confidence 234578999999996 458998886554432 7889999999763
No 47
>PRK10602 murein peptide amidase A; Provisional
Probab=99.89 E-value=2.7e-23 Score=168.71 Aligned_cols=98 Identities=23% Similarity=0.255 Sum_probs=82.6
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCC---
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRT--- 79 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~--- 79 (149)
++|+.|+|.|++||+|++|..++..+++.|..+ ...++|||++||||+++. +|.||.|+||||||+.
T Consensus 37 ~~~~~vli~agiHG~E~~g~~~~~~l~~~l~~~---------~~~~~iipvvNPDG~~~~-~R~n~~GvDLNRnFp~~~w 106 (237)
T PRK10602 37 ASRESGLILAGTHGDETASVVTLSCALRTLTPS---------LRRHHVVLAVNPDGCQLG-LRANANGVDLNRNFPAANW 106 (237)
T ss_pred CCCceEEEEecCCCCcHHHHHHHHHHHHhhhhh---------ccceEEEEEECccccccc-cccCCCCCchhhcCCCccc
Confidence 467899999999999999999999999988632 234689999999999995 7999999999999974
Q ss_pred -----------------------CCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 80 -----------------------VIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 80 -----------------------~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
+.|.++||++++.+++.++ ...+++++|+.-
T Consensus 107 ~~~~~~~~w~~~~~~~~~~~y~G~~p~SepEt~al~~~i~~~------------------~~~~~~s~HsP~ 160 (237)
T PRK10602 107 KEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRL------------------QPAWVVSFHDPL 160 (237)
T ss_pred ccccccccccCCCCccchhhccCCCCCCCHHHHHHHHHHHHc------------------CCCEEEEeeccc
Confidence 4467899999988887764 237899999843
No 48
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.85 E-value=2.7e-21 Score=156.35 Aligned_cols=96 Identities=24% Similarity=0.343 Sum_probs=82.5
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCcccccc--------c-----cCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGN--------N-----RCSLT 69 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~--------~-----R~n~~ 69 (149)
.+||.|||.||+||+||+|..++++++++|++ +++++|+|+||+||||+++.+ | |.|+.
T Consensus 36 ~~Kp~I~I~gGvHarEwig~~~al~fi~~L~~--------~~~~n~~I~P~vNPDGYe~~~~L~r~nP~~~hHaaR~~A~ 107 (240)
T cd06232 36 GLDHPVVISAGQHANETSGVVGALRAAEALAA--------RPGAHFALIPLENPDGYALHERLRAEHPRHMHHAARYTAL 107 (240)
T ss_pred CCCcEEEEeCCcCCCcchhHHHHHHHHHHHhc--------cCCceEEEEEeeCCcHHHhhchhhccCcccccchhhhccc
Confidence 57999999999999999999999999999985 678999999999999999973 3 77888
Q ss_pred CCCCC-CCCCCCCCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 70 GRDLN-RQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 70 GvDLN-Rnw~~~~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
|.|+| |+|.. .+|+.++++++.. ..+.+.||+|++-.
T Consensus 108 g~D~~fr~~~~-----~~Es~~~~~~~~~------------------~~~~~hiDlHeyp~ 145 (240)
T cd06232 108 GDDLEYREFPP-----FGEREARHQALAK------------------SGAQLHVNLHGYPA 145 (240)
T ss_pred CCCcccccCCc-----chHHHHHHHHHHh------------------hCCcEEEECCCCCc
Confidence 99999 98875 3788887666654 35799999998754
No 49
>KOG2649|consensus
Probab=99.73 E-value=1.4e-17 Score=145.29 Aligned_cols=111 Identities=19% Similarity=0.310 Sum_probs=94.8
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---CCHHHHHhhhCcEEEEEeeeCCCccccc--------cccCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG---DSAQAKELREKFIFKLIPMLNPDGVIVG--------NNRCSLTGR 71 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~~~~~~~ll~~~~~~ivP~~NPDG~~~g--------~~R~n~~Gv 71 (149)
.++|.+-++|++||+|..|.+.++.++++|+. .++.++.|++++.|+|+|.+||||++.. -.|.|++|+
T Consensus 118 ~gePEfKyv~nmHGnE~vGRElll~L~e~Lc~~y~~n~~i~~Lv~~trIHlmPSmNPDGyE~a~~~~~~~~~GR~Nang~ 197 (500)
T KOG2649|consen 118 PGEPEFKYIGNMHGNEVVGRELLLRLAEYLCDNYGKDPRITQLVNNTRIHIMPSMNPDGYEIAKRGDRGWATGRNNANGV 197 (500)
T ss_pred CCCCcceeeeeccccccccHHHHHHHHHHHHHhcCCChHHHHHHhhceEEEecccCcchhhhhhcccccceecccCcccc
Confidence 46888999999999999999999999999985 5899999999999999999999999874 248999999
Q ss_pred CCCCCCCCC-----------------------CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 72 DLNRQYRTV-----------------------IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 72 DLNRnw~~~-----------------------~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
||||||+.. ....+|||.|+.++++. ..++.-..|||.+
T Consensus 198 DLNrnFPd~~~~~~~~~~~~~~n~~l~~~~~~~~~~~pEt~Avm~W~~~------------------~pFvLSAnLHGG~ 259 (500)
T KOG2649|consen 198 DLNRNFPDQFRLVYFIVTFDLLNSHLIMFNDDLNLRQPETIAVMKWLRD------------------IPFVLSANLHGGA 259 (500)
T ss_pred chhccCcccccceeeeeeecccccccccccccccccCccHHHHHHHHhh------------------cceeeeccccCCc
Confidence 999999841 12578999886444332 5789999999988
Q ss_pred ccC
Q psy17663 129 EPA 131 (149)
Q Consensus 129 ~~~ 131 (149)
...
T Consensus 260 lva 262 (500)
T KOG2649|consen 260 LVA 262 (500)
T ss_pred eEE
Confidence 776
No 50
>cd06230 M14_ASTE_ASPA_like The Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily belongs to the M14 family of metallocarboxypeptidases (MCPs), and includes ASTE, which catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) which cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.64 E-value=7.4e-16 Score=125.06 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=78.0
Q ss_pred EEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCCCCcc
Q psy17663 8 IVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYPP 87 (149)
Q Consensus 8 V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~~~PE 87 (149)
|+|+|++||+|+.|.+++..+++.+.... +.+..+.++|++||+|+..+ +|.+. .||||+|++......+|
T Consensus 1 v~i~agiHG~E~~g~~~~~~l~~~~~~~~------~l~g~v~~vp~~N~~g~~~~-~R~~~--~DLNR~fpg~~~~~~~~ 71 (252)
T cd06230 1 VAVVGGVHGNEPCGVQAIRRLLAELDEGQ------ALRGPVKLVPAANPLALEAG-QRYLD--RDLNRIFPGDPDSGTYE 71 (252)
T ss_pred CEEEcccCCCcHHHHHHHHHHHHHHhhhc------ccccEEEEEeCcCHHHHHhC-CCCCC--cCCCCCCCCCCCCCCHH
Confidence 58999999999999999999999886421 23577899999999999995 68776 99999999754325777
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 88 VWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 88 ~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
.+.++.+...+. ...++.||+|+.+..
T Consensus 72 ~~~a~~l~~~i~----------------~~~d~~iDlH~~~~~ 98 (252)
T cd06230 72 DRLAAELCPELE----------------GLADAVLDLHSTSSE 98 (252)
T ss_pred HHHHHHHHHHHh----------------hhccEEEECCCCCCC
Confidence 776666665552 237999999998863
No 51
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.62 E-value=1e-15 Score=126.82 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=77.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
+..|+|+|+|++||+|+.|..++..+++.|.. .. -+..++++|++||.|+..+ .|.+..|.||||.|++..
T Consensus 18 ~~gp~v~i~~giHGdE~~G~~~~~~l~~~l~~-----~~--~~g~v~~vp~~Np~a~~~~-~R~~~d~~dlNR~fpg~~- 88 (287)
T cd06251 18 KPGPTLLLTAAIHGDELNGVEIIRRLLRQLDP-----KT--LRGTVIAVPVVNVFGFLNQ-SRYLPDRRDLNRSFPGSK- 88 (287)
T ss_pred CCCCEEEEEcCccCCchhHHHHHHHHHhcCCc-----cc--CceEEEEEeCCCHHHHHhc-cccCCCccCHhhcCCCCC-
Confidence 45799999999999999999999999888742 11 2357789999999999995 798889999999998753
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
...++.+-...+.+.+. ...++++|||+.+.
T Consensus 89 ~g~~~~~~a~~i~~~~~----------------~~~d~~iDlHs~~~ 119 (287)
T cd06251 89 NGSLASRIAHLFFTEIL----------------SHADYGIDLHTGAI 119 (287)
T ss_pred CCCHHHHHHHHHHHHHH----------------hhCCEEEEcCCCCC
Confidence 33444443334444332 23789999999863
No 52
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.60 E-value=3e-15 Score=124.46 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~~ 81 (149)
+..|.|+|+|++||+|..|.+++..+++.|.. .. + +..++++|++||.|+..+ .|.++ .+.||||.|++.
T Consensus 22 ~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~-----~~-~-~g~~~~vp~~N~~a~~~~-~R~~p~d~~dlNR~fpg~- 92 (293)
T cd06255 22 EPGPTLWLHAQVHGNEYNGTQAIVDLYRSLDP-----AA-L-KGRLVALPTANPTALDAR-TRMSPFDELDLNRTFPGN- 92 (293)
T ss_pred CCCCEEEEEcccCCCcHHHHHHHHHHHHhCCH-----hh-c-CCeEEEEeCcCHHHHHhh-cccCCCCCCCcccCCCCC-
Confidence 45799999999999999999999999998732 12 2 357779999999999995 79887 899999999864
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 82 RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 82 ~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
+...++-+-+..+.+.+. ...+++||||+.+..
T Consensus 93 ~~g~~~~r~A~~~~~~~~----------------~~~d~~iDlHs~~~~ 125 (293)
T cd06255 93 PNGMVTQQMAHALFEEVR----------------GVADYLVDLHTMTTI 125 (293)
T ss_pred CCCCHHHHHHHHHHHHHH----------------hcCCEEEECCCCCCC
Confidence 233444333333333332 345899999987664
No 53
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=99.58 E-value=7.6e-15 Score=125.37 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=59.3
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccc-----cccCC-CCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVG-----NNRCS-LTGRDLNRQY 77 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g-----~~R~n-~~GvDLNRnw 77 (149)
..|+|+|+|++||+|+.|..++..+++.|.... .... + +.+|+++|++||+|+... ..|.+ ..|.||||.|
T Consensus 26 ~gp~v~i~agiHGdE~~G~~~~~~L~~~l~~~~-~~~~-l-~G~v~ivP~~Np~g~~~~~~~~~~~R~~p~dg~dlNR~F 102 (359)
T cd06250 26 AGPKVYIQASLHADELPGMLVLHHLIELLKKLE-AEGR-I-LGEITLVPVANPIGLNQRLGGFHLGRFDLASGTNFNRDF 102 (359)
T ss_pred CCCEEEEEeccccCchHHHHHHHHHHHHHhhhc-cccc-c-CceEEEEeCcChHHHHhhccccccccccCCCCCccCcCC
Confidence 469999999999999999999999999996421 0012 2 458999999999999772 13555 4999999999
Q ss_pred CCC
Q psy17663 78 RTV 80 (149)
Q Consensus 78 ~~~ 80 (149)
++.
T Consensus 103 Pg~ 105 (359)
T cd06250 103 PDL 105 (359)
T ss_pred CCc
Confidence 974
No 54
>cd06233 Peptidase_M14-like_6 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=99.57 E-value=9.4e-15 Score=121.51 Aligned_cols=71 Identities=28% Similarity=0.294 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCcCCCC-chHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGE-TPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRT 79 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E-~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~ 79 (149)
+.+|.|+|++|+||.| .+|+.++..+++.+.. ..+..++.+++||++||.|+.. ..|.|.+||||||||..
T Consensus 49 ~~~~~l~i~sGvHG~Eg~~Gs~~~~~ll~~~~~-----~~~~~~~~vi~vh~vNP~Gf~~-~~R~nedgvDLNRnf~d 120 (283)
T cd06233 49 DAKRLLVITSGTHGVEGFCGSAIQLALLRELLP-----RSLPAGVAVLLVHALNPYGFAH-LRRVNENNVDLNRNFLD 120 (283)
T ss_pred CCCcEEEEEecccCCcccchHHHHHHHHHhcch-----hhccCCceEEEEeCcCHHHHhh-cccCCCCCCChhhcccc
Confidence 3467999999999999 7999999999888742 3566688999999999999998 57999999999999974
No 55
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.54 E-value=1.6e-14 Score=119.52 Aligned_cols=101 Identities=17% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCcccccccc-CC-CCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNR-CS-LTGRDLNRQYRTV 80 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R-~n-~~GvDLNRnw~~~ 80 (149)
++.|+|+|+|++||+|+.|.+++..+++.|-. . . -+..++++|++||.|+..+ .| .+ ..|.||||.|++.
T Consensus 15 ~~gp~v~i~agvHG~E~~G~~~~~~l~~~l~~---~--~--~~g~v~~vp~~N~~a~~~~-~r~~~~~d~~dlNR~fpg~ 86 (288)
T cd06254 15 NPGPTLAITAGVHGGEYPGIQALQKLAREIDP---A--K--LSGTLIIVHVLNLSGFYAR-TPYIVPEDGKNLNRVFPGD 86 (288)
T ss_pred CCCCEEEEEecccCCchhHHHHHHHHHHhCCc---c--c--CeEEEEEEeCcCHHHHHhc-CcccCCCCCCchhhcCCCC
Confidence 46799999999999999999999999988732 1 1 2577899999999999885 45 33 5899999999975
Q ss_pred CCCCCccHHHHHH-HHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 81 IRETYPPVWHTKL-LIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 81 ~~~~~PE~~a~~~-li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
. ... +++.+.. +.+.+. ...+++||||+.+.
T Consensus 87 ~-~g~-~~~r~a~~~~~~~~----------------~~~d~~iDlHs~~~ 118 (288)
T cd06254 87 K-DGT-LTERIAYFLTEEVI----------------DKADFLIDLHSGDG 118 (288)
T ss_pred C-CCC-HHHHHHHHHHHHHH----------------hhCcEEEECCCCCC
Confidence 3 222 3333222 223332 35689999999764
No 56
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.53 E-value=2.5e-14 Score=119.32 Aligned_cols=108 Identities=20% Similarity=0.255 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCC
Q psy17663 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTV 80 (149)
Q Consensus 2 ~~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~ 80 (149)
+++.|+|+|+|++||+|..|.+++..++++|..... ...+.-+.++.++|++||.|+..+ .|.++ .|.||||.|++.
T Consensus 16 g~~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~~~~-~~~~~l~g~v~~vP~~N~~a~~~~-~R~~p~d~~dlNR~Fpg~ 93 (298)
T cd06253 16 GGGEKRICIVGGIHGDELQGLYICSLLIRFLKELEK-RGPLKLNGIVDVIPSVNPLGLNLG-TRFWPTDNSDINRMFPGD 93 (298)
T ss_pred CCCCcEEEEEccCccchHHHHHHHHHHHHHHhhhhc-ccccccCceEEEEeCcCHHHHHHh-hCcCCCCCCcccccCCCC
Confidence 457899999999999999999999999999864210 001223688999999999999884 68765 799999999974
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 81 IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 81 ~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
. ...++-+-+..+. .+. ...+++||||+...
T Consensus 94 ~-~g~~~~riA~~~~-~~~----------------~~~d~~iDLHsg~~ 124 (298)
T cd06253 94 P-QGETTQRIAAAVF-EDV----------------KGADYCIDLHSSNI 124 (298)
T ss_pred C-CCcHHHHHHHHHH-HHh----------------cCCCEEEEccCCCc
Confidence 3 3333322222222 221 35689999999643
No 57
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.52 E-value=2.7e-14 Score=119.75 Aligned_cols=99 Identities=19% Similarity=0.168 Sum_probs=75.1
Q ss_pred CcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCCCCC
Q psy17663 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTVIRE 83 (149)
Q Consensus 5 k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~~~~ 83 (149)
.|+|+|+||+||+|..|..++..++++|.. .. -+..++++|++||-|+..+ .|.++ .|.||||.|++. +.
T Consensus 34 gp~v~I~aGiHGdE~~G~~~~~~L~~~l~~-----~~--l~G~vi~vP~~Np~a~~~~-~R~~p~D~~DLNR~Fpg~-~~ 104 (316)
T cd06252 34 GPTVLLTGGNHGDEYEGQIALLRLARRLDP-----EE--VRGRVIILPALNFPAVQAG-TRTSPIDGGNLNRVFPGD-PD 104 (316)
T ss_pred CCEEEEEccCCCCchHHHHHHHHHHHhCCh-----hh--CeEEEEEEeCCCHHHHHhc-cccCCCCCCcHHhhCCCC-CC
Confidence 689999999999999999999999998732 11 2568899999999999985 78876 689999999974 33
Q ss_pred CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 84 TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 84 ~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
...|.+-.+.+.+.+. ...+++||||+.+
T Consensus 105 gs~~~riA~~i~~~l~----------------~~aD~~iDLHt~~ 133 (316)
T cd06252 105 GTVTEMIAHYLTTELL----------------PRADYVIDLHSGG 133 (316)
T ss_pred CCHHHHHHHHHHHhhh----------------hcCcEEEEccCCC
Confidence 4444333333333332 3569999999864
No 58
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=99.49 E-value=2.6e-14 Score=117.09 Aligned_cols=107 Identities=19% Similarity=0.170 Sum_probs=79.6
Q ss_pred CcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCCCCC
Q psy17663 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTVIRE 83 (149)
Q Consensus 5 k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~~~~ 83 (149)
.|+|+|+|++||+|+.|.+++..++++|...+ -...++++|+.||.|+..+ .|... .|.||||.|++....
T Consensus 2 Gp~l~i~agvHGnE~~G~~a~~~L~~~l~~~~-------~~G~~~~vp~~N~~a~~~~-~R~~~~d~~dLNR~Fpg~~~~ 73 (292)
T PF04952_consen 2 GPTLLITAGVHGNEYNGIEALQRLLRELDPAD-------LSGTVIIVPVANPPAFRQG-TRFVPIDGRDLNRCFPGDALG 73 (292)
T ss_dssp S-EEEEEE-SSTTBCHHHHHHHHHHHHHHGGG-------CTCEEEEEEESSHHHHHHT-SSSSTTTSSBGGGSTTHHHHC
T ss_pred CCEEEEEcCcccChHHHHHHHHHHHhcchhcc-------cCCceEEEEEeCHHHHHhc-cccCCCCCCCHHHhCCCCccc
Confidence 58999999999999999999999999985321 3577899999999999996 68876 899999999953211
Q ss_pred ----CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 84 ----TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 84 ----~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
...|...++++...+.+.. ....++++|||+.+...
T Consensus 74 ~~~~~~~~~~~~~~ia~~l~~~~------------~~~aD~~iDLHs~~~~~ 113 (292)
T PF04952_consen 74 SSLQEDYEATETERIAHALFEEI------------LPDADYVIDLHSGSSSS 113 (292)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHTT------------CCCGSEEEEEEEESSTB
T ss_pred cccccccchhHHHHHHHHHhhhh------------hccceEEEEeccCCCCC
Confidence 1233344556666665541 14789999999876543
No 59
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=99.47 E-value=8.9e-14 Score=119.56 Aligned_cols=85 Identities=28% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCcEEEEEcCcCC-CCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHP-GETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg-~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~ 81 (149)
..++.|++.+++|+ +|+...+++.++|..+++.+...++++++++++++|.+||||+.+++.|.|+.|+||||+|..++
T Consensus 145 ~~~~~i~~~~~~H~~g~~~~~~~~~~li~r~~~~~~~~~~lld~~~~~vvp~~NpDG~~~~~lr~na~~~dLnr~~~~~~ 224 (374)
T COG2866 145 PEHKTILITAGQHARGEKMVEWFLYNLILRYLDPDVQVRKLLDRADLHVVPNVNPDGSDLGNLRTNANGVDLNRNFIAPN 224 (374)
T ss_pred CccceeeEecccccCccHHHHHHHHHHHHHhcCccchhhhhhccccEEEecccCCchhhhcccccccCccchhhhccCCC
Confidence 45799999999999 89988999999998888766788999999999999999999999998999999999999998776
Q ss_pred CCCCcc
Q psy17663 82 RETYPP 87 (149)
Q Consensus 82 ~~~~PE 87 (149)
....++
T Consensus 225 ~~~~~~ 230 (374)
T COG2866 225 EEEGKE 230 (374)
T ss_pred cccchH
Confidence 443444
No 60
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=99.45 E-value=2.5e-13 Score=114.77 Aligned_cols=102 Identities=15% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTVIR 82 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~~~ 82 (149)
..|+|+|+|++||+|..|..++..++++|.. .. -+..+++||++||-|+... .|.++ .|.||||.|++. +
T Consensus 46 ~gp~v~i~agvHGdE~~G~~~~~~L~~~l~~-----~~--l~G~v~~vP~~N~~g~~~~-~r~~p~d~~nlNR~fPG~-~ 116 (325)
T TIGR02994 46 IGPTALLTGGNHGDEYEGPIALFELARTLDA-----ED--VSGRIIIVPAMNYPAFRAG-TRTSPIDRGNLNRSFPGR-P 116 (325)
T ss_pred CCCEEEEEeccCCCchHHHHHHHHHHhhCCh-----hh--CcEEEEEEcCCCHHHHHhh-CCCCCCCCCccCCCCCCC-C
Confidence 5689999999999999999999999998832 12 2577899999999999884 68776 899999999974 3
Q ss_pred CCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 83 ETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 83 ~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
...++-+-+..+.+.+. ...+++||||+.+..
T Consensus 117 ~gs~~~riA~~l~~~l~----------------~~aD~~iDlHs~~~~ 148 (325)
T TIGR02994 117 DGTVTEKIADYFQRHLL----------------PLADIVLDFHSGGKT 148 (325)
T ss_pred CCCHHHHHHHHHHHhHH----------------hhCCEEEECCCCCcc
Confidence 33333222222223332 357999999998773
No 61
>cd06256 M14_ASTE_ASPA_like_6 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.41 E-value=8.8e-13 Score=111.61 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=75.4
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRE 83 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~ 83 (149)
..|.|+|+|++||+|..|.+++..+++++.. .. +... .++++.||-++..+ .|....|.||||.|++...
T Consensus 33 ~~p~v~I~aGvHGNE~~Gi~al~~ll~~~~~-----~~-~~~~--~~l~i~Np~A~~~~-~R~~~d~~DLNR~Fpg~~~- 102 (327)
T cd06256 33 RSPPLFVSTLLHGNEPTGLQAVQRLLKALEA-----RP-LPRS--LLLFIGNVAAALAG-VRRLDGQPDYNRCWPGPYD- 102 (327)
T ss_pred CCCeEEEEccccCCcHHHHHHHHHHHHhCCh-----hh-cCCc--EEEEEeCHHHHHhC-cccCCCCCCccCCCCCCCC-
Confidence 3489999999999999999999998887732 12 2333 34557999999985 6877778999999997532
Q ss_pred CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 84 TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 84 ~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
.+|.+-++.+.+.+.+ ...++.||||+.+..
T Consensus 103 -s~e~r~A~~l~~~l~~---------------~~~d~~IDLHstt~~ 133 (327)
T cd06256 103 -DPEGRLAEEVLELLAD---------------ERPEASIDIHNNTGS 133 (327)
T ss_pred -CHHHHHHHHHHHHHHh---------------cCCcEEEECCCCCCC
Confidence 6776666666555542 345799999976443
No 62
>PRK02259 aspartoacylase; Provisional
Probab=99.35 E-value=2.8e-12 Score=106.48 Aligned_cols=102 Identities=22% Similarity=0.239 Sum_probs=73.4
Q ss_pred cEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCC--
Q psy17663 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRE-- 83 (149)
Q Consensus 6 ~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~-- 83 (149)
++|+|+||+||+|..|.+++..+++.+.. .+ + .....++|+.||.|+..+ .|.. ..||||.|++....
T Consensus 3 ~~v~i~aGvHGnE~~Gv~~v~~l~~~~~~-----~~-~-~g~~i~~~i~Np~A~~~~-~Ry~--~~DLNR~Fpg~~~~~~ 72 (288)
T PRK02259 3 NRVAIVGGTHGNEITGIYLVKKWQQQPNL-----IN-R-KGLEVQTVIGNPEAIEAG-RRYI--DRDLNRSFRLDLLQNP 72 (288)
T ss_pred cEEEEEcCccCChhHHHHHHHHHHhcccc-----cc-c-CccEEEEEeeCHHHHHhC-CCCC--cccCCCCCCCccccCC
Confidence 67999999999999999998888887532 11 2 244568899999999995 6864 38999999964211
Q ss_pred --CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCc
Q psy17663 84 --TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQE 129 (149)
Q Consensus 84 --~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~ 129 (149)
+.+|.+.++.+...+..+. ....++++|||+.+.
T Consensus 73 ~~~~~e~~~A~~l~~~~~~~~------------~~~~D~~iDLHttts 108 (288)
T PRK02259 73 DLSGYEQLRAKELVQQLGPKG------------NSPCDFIIDLHSTTA 108 (288)
T ss_pred CCCCHHHHHHHHHHHHHhhcc------------CccCcEEEECCCCCC
Confidence 3456666666655553220 147899999998643
No 63
>cd06909 M14_ASPA Aspartoacylase (ASPA) belongs to the Succinylglutamate desuccinylase/aspartoacylase subfamily of the M14 family of metallocarboxypeptidases. ASPA (also known as aminoacylase 2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.32 E-value=6.4e-12 Score=104.43 Aligned_cols=101 Identities=20% Similarity=0.151 Sum_probs=71.5
Q ss_pred cEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCC--
Q psy17663 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRE-- 83 (149)
Q Consensus 6 ~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~-- 83 (149)
++|+|+||+||+|..|.+++..+++.+... .......++|+.||.++..+ .|.. ..||||.|++....
T Consensus 1 ~~v~I~aGvHGnE~~Gv~~v~~l~~~~~~~-------~~~~~~v~~~i~Np~A~~~~-~Ry~--d~DLNR~Fpg~~~~~~ 70 (282)
T cd06909 1 KRVAIVGGTHGNELTGVYLVKKWLQQPELI-------QRPSLEVHPVIANPRAVEAC-RRYI--DTDLNRCFTLENLSNS 70 (282)
T ss_pred CeEEEEcCccCChHHHHHHHHHHHhccccc-------ccCCeEEEEEecCHHHHHhC-CccC--CCCCCCCCCCCccCCC
Confidence 469999999999999999888888765321 12233456677899999985 6865 58999999964322
Q ss_pred --CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCC
Q psy17663 84 --TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQ 128 (149)
Q Consensus 84 --~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s 128 (149)
+.+|.+.++.+.+.+... | ....+++||||+.+
T Consensus 71 ~~~~~e~~~A~~l~~~l~~~-------~-----~~~~D~~iDLHstt 105 (282)
T cd06909 71 ELLPYEVKRAKELNQKLGPK-------G-----NSPCDFVIDLHNTT 105 (282)
T ss_pred CCCCHHHHHHHHHHHHHhhc-------c-----CCCceEEEECCCCC
Confidence 245767666666655422 0 13689999999863
No 64
>COG3608 Predicted deacylase [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=104.33 Aligned_cols=104 Identities=17% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCC-CCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSL-TGRDLNRQYRTVI 81 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~-~GvDLNRnw~~~~ 81 (149)
++.|.++|+|++||+|..|..++..+++.|-. .++ ..+++|||.+||-++.. ++|++. .+.||||+|++.
T Consensus 46 g~gp~~~l~ag~HGdEl~G~~al~~Li~~L~~-----a~i--~GtV~iVP~aN~~a~~~-~~R~~p~d~~N~NR~fPg~- 116 (331)
T COG3608 46 GPGPSVLLQAGVHGDELPGVIALRRLIPALDP-----ADI--SGTVIIVPIANPPAFEA-QGRFSPGDDTNLNRAFPGR- 116 (331)
T ss_pred CCCCEEEEEecccccccchHHHHHHHHHhcCH-----hhc--CceEEEEeccCHHHHHh-hcccCCCCCCcccccCCCC-
Confidence 34799999999999999999999999999942 223 47899999999999999 578876 899999999963
Q ss_pred CCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 82 RETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 82 ~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+...+..+.+..+-+.|. ...+..+|||+.+.-.
T Consensus 117 ~dgs~t~ria~~l~r~L~----------------~~aD~VlDlHsg~~~~ 150 (331)
T COG3608 117 PDGSATERIADRLKRLLL----------------PLADIVLDLHSGGEGL 150 (331)
T ss_pred CCCCHHHHHHHHHHHhhh----------------cccCEEEEccCCCCcc
Confidence 334444444333322222 3578999999987765
No 65
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=99.26 E-value=1.6e-11 Score=101.06 Aligned_cols=98 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred cEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCC-----CCCCCCCCCCC
Q psy17663 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLT-----GRDLNRQYRTV 80 (149)
Q Consensus 6 ~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~-----GvDLNRnw~~~ 80 (149)
|+|+|+|++||+|+.|.+++..+++. ++ .. +. ..+.++ +.||-++..+ .|.++. +.||||.|++.
T Consensus 1 P~v~isagvHGnE~~Gi~al~~l~~~----~~--~~-l~-G~li~~-~~N~~A~~~~-~~~~p~~~R~~~~dLNR~Fpg~ 70 (272)
T cd06910 1 PHVMINALVHGNEICGAIALDALLRE----GL--RP-RR-GRLTLA-FANVAAYARF-DPNNPTASRFVDEDMNRVWSPD 70 (272)
T ss_pred CEEEEEcCcccChHHHHHHHHHHHhC----cc--cc-cC-CCEEEE-EECHHHHHhc-ccCCCcccccCCCCcCCCCCCc
Confidence 78999999999999999999988873 11 12 33 344455 7999999874 566664 78999999863
Q ss_pred CCC---CCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCcc
Q psy17663 81 IRE---TYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEP 130 (149)
Q Consensus 81 ~~~---~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~ 130 (149)
... ..+|.+.+..+ ..+. ...++++|||+.+..
T Consensus 71 ~~~g~~~~~e~~~A~~l-~~~i----------------~~aD~~iDLHt~~~~ 106 (272)
T cd06910 71 VLDGPRDSIELRRAREL-RPVI----------------DTADYLLDLHSMQWP 106 (272)
T ss_pred ccCCCcccHHHHHHHHH-HHHH----------------hhCCEEEECCCCCCC
Confidence 211 23444443333 2222 345799999987764
No 66
>PRK05324 succinylglutamate desuccinylase; Provisional
Probab=99.24 E-value=3.5e-11 Score=101.86 Aligned_cols=107 Identities=19% Similarity=0.189 Sum_probs=71.8
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
+..|.|+|+||+||+|+.|.+++..+++.|... .+.-... .++|+.||.++..+ .|.. ..||||.|++...
T Consensus 45 ~~gp~v~IsaGvHGNE~~Gi~~l~~Ll~~l~~~-----~~~~~~~-v~~i~~Np~A~~~~-~R~v--d~DLNR~FpG~~~ 115 (329)
T PRK05324 45 PSTKALVLSAGIHGNETAPIELLDQLVRDLLAG-----ELPLRAR-LLVILGNPPAMRAG-KRYL--DEDLNRLFGGRHQ 115 (329)
T ss_pred CCCCeEEEECCcccCcHHHHHHHHHHHHhhhcc-----ccccCce-EEEEecCHHHHHhC-cccC--CCCcccCCCCCcC
Confidence 457899999999999999999999999988532 1111233 45668999999985 6865 5799999996432
Q ss_pred CCC--ccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 83 ETY--PPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 83 ~~~--PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
.+. +|.+.++.+.+.+... ++. .....++.+|||+.
T Consensus 116 ~~~~~~E~~rA~~L~~~i~~~------~~~---~~~~~D~~iDLHta 153 (329)
T PRK05324 116 QFPGSDEARRAAELEQAVEDF------FAA---GAERVRWHYDLHTA 153 (329)
T ss_pred CCCCcHHHHHHHHHHHHHHHH------hcc---cCccceEEEECCCC
Confidence 222 2665555443322211 000 01457899999973
No 67
>cd03855 M14_ASTE Peptidase M14 Succinylglutamate desuccinylase (ASTE, also known as N-succinyl-L-glutamate amidohydrolase, N2-succinylglutamate desuccinylase, and SGDS; EC 3.5.1.96) belongs to the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily of the M14 family of metallocarboxypeptidases. This group includes succinylglutamate desuccinylase that catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway. It hydrolyzes N-succinyl-L-glutamate to succinate and L-glutamate.
Probab=99.17 E-value=1.2e-10 Score=98.33 Aligned_cols=105 Identities=21% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
+..|.|+|+|++||+|+.|.+++..+++.|.... + .-..-.++|+.||.++..+ .|.. ..||||.|++...
T Consensus 40 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~~-----l-~~~~~v~~~~~Np~A~~~~-~R~~--d~DLNR~FpG~~~ 110 (322)
T cd03855 40 PATKAIVISAGVHGNETAPIEILNQLIKDLLAGE-----L-PLAHRLLFIFGNPPAMRAG-ERFV--DENLNRLFSGRHQ 110 (322)
T ss_pred CCCCeEEEEccccCCchhHHHHHHHHHHhhhhcc-----c-cCCeEEEEEeeCHHHHHhC-cccC--CCCccCCCCCCcc
Confidence 3568899999999999999999999999886421 1 1122357778999999985 6754 3699999996432
Q ss_pred --CCCccHHHHHH---HHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 83 --ETYPPVWHTKL---LIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 83 --~~~PE~~a~~~---li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
...+|.+-++. ++..+.... .....++.+|||+.
T Consensus 111 ~~~~~~E~~rA~~L~~~~~~~~~~~-----------~~~~~d~~iDLHta 149 (322)
T cd03855 111 KDEPGPERARAAELEQAVADFFAAG-----------PSGAERWHYDLHTA 149 (322)
T ss_pred cCCCChHHHHHHHHHHHHHHHHhhc-----------ccccCcEEEEccCC
Confidence 12355444333 233333221 01467999999995
No 68
>TIGR03242 arg_catab_astE succinylglutamate desuccinylase. Members of this protein family are succinylglutamate desuccinylase, the fifth and final enzyme of the arginine succinyltransferase (AST) pathway for arginine catabolism. This model excludes the related protein aspartoacylase.
Probab=99.16 E-value=1.4e-10 Score=97.70 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCC
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIR 82 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~ 82 (149)
+..|.|+|+||+||+|+.|.+++..+++.+... .+.....+ ++++.||.|+..+ .|.. ..||||.|++...
T Consensus 39 ~~gp~v~IsaGvHGNE~~Gi~~l~~ll~~l~~~-----~~~~~~~l-~~i~~Np~A~~~~-~R~~--~~DLNR~FpG~~~ 109 (319)
T TIGR03242 39 PPQKSLVISAGIHGNETAPIEILEQLLGDIAAG-----KLPLRVRL-LVILGNPPAMRTG-KRYL--HDDLNRMFGGRYQ 109 (319)
T ss_pred CCCCEEEEEcCcccchHHHHHHHHHHHhhhhhc-----cccCCceE-EEEEcCHHHHHhC-cccC--CCCccCCCCCccc
Confidence 456899999999999999999999999987531 12234445 4447899999985 6865 4799999996421
Q ss_pred --CCCccHHH---HHHHHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 83 --ETYPPVWH---TKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 83 --~~~PE~~a---~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
....|... +.+++..+..... ....++.||||+.
T Consensus 110 ~~~~~~E~~rA~~l~~~~~~~~~~~~-----------~~~~D~~IDLHt~ 148 (319)
T TIGR03242 110 QLAPSFETCRAAELEQCVEDFFSQGG-----------RSVARWHYDLHTA 148 (319)
T ss_pred cccCchHHHHHHHHHHHHHHHhcccc-----------CccceEEEECCCC
Confidence 12345443 3344444443210 1356999999975
No 69
>PF10994 DUF2817: Protein of unknown function (DUF2817); InterPro: IPR021259 This family of proteins has no known function.
Probab=98.95 E-value=5.3e-09 Score=89.22 Aligned_cols=69 Identities=26% Similarity=0.271 Sum_probs=56.8
Q ss_pred CCcEEEEEcCcCCCCc-hHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCC
Q psy17663 4 RKKAIVITSRVHPGET-PSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYR 78 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~-~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~ 78 (149)
.++.+++++|.||=|- .||.+-..+++.. ....+.+++-+++|=.+||-|+... .|.|-.+|||||||.
T Consensus 50 a~~lLv~~SGtHGVEGf~GSaiQ~~~L~~~-----~~~~~~~~~avllVHAlNPyGfa~~-RR~nE~NVDLNRNfl 119 (341)
T PF10994_consen 50 ASRLLVLTSGTHGVEGFAGSAIQIALLRED-----LARSLPAGVAVLLVHALNPYGFAWL-RRVNENNVDLNRNFL 119 (341)
T ss_pred CCeEEEEEecCCcccccccHHHHHHHHHcc-----cccccCCCCeEEEEEccCcccccee-eccCCcCcCcccccC
Confidence 3668999999999996 5666666666654 2346678899999999999999995 799999999999997
No 70
>COG2988 Succinylglutamate desuccinylase [Amino acid transport and metabolism]
Probab=97.84 E-value=2.3e-05 Score=65.84 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=64.9
Q ss_pred EEEEEcCcCCCCchHHHHHHHHHHHHhcC-CHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCC-CCCC
Q psy17663 7 AIVITSRVHPGETPSSWMMKGFMDFLTGD-SAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTV-IRET 84 (149)
Q Consensus 7 ~V~i~~~iHg~E~~~~~~~~~~i~~L~~~-~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~-~~~~ 84 (149)
.+.|+|||||+|+++.+.+..+++.+... -|. ... .++-+-||-..+.| -|. .--||||-|.+. ...+
T Consensus 45 ~lvIsaGiHGNEtapvEll~kl~~~~~ag~~p~------a~r-~L~ilgNP~Ai~~g-kRY--ieqDlNR~F~gr~q~~~ 114 (324)
T COG2988 45 SLVISAGIHGNETAPVELLDKLQQKISAGQLPL------AWR-CLVILGNPPAIAAG-KRY--IEQDLNRMFGGRPQSFS 114 (324)
T ss_pred ceEEEecccCCccCcHHHHHHHHhhhhhcccCc------cee-EEEEecCcHHHHhc-hHH--HhhhHHHHhCCCcccCC
Confidence 48999999999999999999999887642 221 122 23446799998886 353 456999999652 1122
Q ss_pred CccHH---HHHHHHHHHHhcCCCcccccccccccceeEEEEeecCC
Q psy17663 85 YPPVW---HTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSK 127 (149)
Q Consensus 85 ~PE~~---a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~ 127 (149)
+-|+. .+++.++..+.. ....+.+.+|+|+.
T Consensus 115 ~ne~~ra~eler~~q~ff~~------------~~~~vr~h~DLHta 148 (324)
T COG2988 115 ENETLRAYELERALQDFFQQ------------GKESVRWHLDLHTA 148 (324)
T ss_pred CCchhhhHHHHHHHHHHHhc------------CCCcceEEEEhhhh
Confidence 23433 334444444332 12689999999963
No 71
>PF09892 DUF2119: Uncharacterized protein conserved in archaea (DUF2119); InterPro: IPR019218 This entry represents a family of hypothetical archaeal proteins of unknown function.
Probab=97.50 E-value=0.00037 Score=55.19 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=56.7
Q ss_pred CCCC-cEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCC
Q psy17663 2 SHRK-KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTV 80 (149)
Q Consensus 2 ~~~k-~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~ 80 (149)
++++ |.=+++||+||+||-.+ ..+++.|..+ .+.+..++|+| +..+|-..+. |+..|..
T Consensus 2 ~~g~gp~rLFvgGlHG~Egk~t---~~iL~~l~~~------~~~~G~l~i~p-lv~~~kYiST---------L~~~YY~- 61 (193)
T PF09892_consen 2 DNGEGPKRLFVGGLHGDEGKDT---SPILKRLKPN------DFNNGNLIIIP-LVENSKYIST---------LDPEYYK- 61 (193)
T ss_pred CCCCCceEEEEeeccCcchhhH---HHHHHHhCcc------cccCceEEEEe-CCCCCCceee---------cCHHHhc-
Confidence 3444 88889999999999655 4455655432 23448899999 6666776642 4444442
Q ss_pred CCCCCccHHHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 81 IRETYPPVWHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 81 ~~~~~PE~~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
+..-+.+++-+.+ -++.+|+-+|+|+..-
T Consensus 62 -------s~~Gk~il~lIe~---------------y~P~~Y~ElHsY~~~s 90 (193)
T PF09892_consen 62 -------SEMGKKILDLIEK---------------YKPEFYFELHSYSKES 90 (193)
T ss_pred -------chhhhHHHHHHHH---------------hCCceEEEEeecCHHH
Confidence 1123444544332 4569999999999876
No 72
>KOG3641|consensus
Probab=96.56 E-value=0.00063 Score=61.55 Aligned_cols=69 Identities=45% Similarity=0.807 Sum_probs=53.1
Q ss_pred EEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCCCCc
Q psy17663 10 ITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYP 86 (149)
Q Consensus 10 i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~~~P 86 (149)
..+..|| |+.+..+..++.+.. +++....|++-.++ ||++||||+..+++|. ++|.+||.+..| ...||
T Consensus 130 t~~~~~P-~t~~n~~F~g~~d~~--dde~~~~l~~~~v~--Vp~l~P~~~~~~~~~t--rsV~e~~~~~~P-~~~H~ 198 (650)
T KOG3641|consen 130 TSSRVHP-ETPSNFVFNGFLDDI--DDERNQTLRRLFVF--VPMLNPDGVVRGHYNT--RSVNENRQYLKP-AVLHP 198 (650)
T ss_pred cccccCC-CCCcceeeccccccc--cchhhhhHhhheee--eeccCCcEEEEEeeec--cccccccceece-ecccC
Confidence 5688999 888887777777665 56777777766655 9999999999986555 999999998765 34443
No 73
>COG4073 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.25 E-value=0.014 Score=45.75 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=49.7
Q ss_pred EEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCCCCCCCCCCCCCCCccH
Q psy17663 9 VITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYPPV 88 (149)
Q Consensus 9 ~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLNRnw~~~~~~~~PE~ 88 (149)
+++||.||+|+-.+.-++. +..+ ++ ++.++.|+|-+|+.-++-+ ||-.|. ..++-
T Consensus 18 lfV~GlHGdEgk~te~ilr-l~~~---~~------~ng~l~Vip~v~n~~YIST----------ldp~yy-----~s~~G 72 (198)
T COG4073 18 LFVGGLHGDEGKATEPILR-LRVL---PE------ENGVLRVIPKVENGPYIST----------LDPSYY-----RSEVG 72 (198)
T ss_pred EEEeeccCcccchhhhhhh-hccc---Cc------cCceEEEEeccCCCCceee----------cChhhc-----cchhh
Confidence 7899999999987765554 2222 22 4688899998887666553 222222 12332
Q ss_pred HHHHHHHHHHHhcCCCcccccccccccceeEEEEeecCCCccC
Q psy17663 89 WHTKLLIRRKTKKKPVQSSTGKMRFRKSGIVTTATMHSKQEPA 131 (149)
Q Consensus 89 ~a~~~li~~l~~~~p~~~~~~~~~~~~~~~~~~iDlHs~s~~~ 131 (149)
..+.+++.+ -++.+|+.+|+|....
T Consensus 73 ~~ilr~vek------------------~rP~vY~ElH~Yr~en 97 (198)
T COG4073 73 ARILRVVEK------------------LRPDVYVELHCYRPEN 97 (198)
T ss_pred HHHHHHHHH------------------hCCceEEEEeecCHhH
Confidence 233333333 4569999999998654
No 74
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=49.00 E-value=15 Score=28.79 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHHHHHHHhc
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKGFMDFLTG 34 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~ 34 (149)
+..++|++.+.+||-|-.|.-..+.|++.|-.
T Consensus 112 ~~~~~vv~stTi~GYEGtGRgF~lkf~~~L~~ 143 (177)
T PF05127_consen 112 RRFPRVVFSTTIHGYEGTGRGFSLKFLKQLKK 143 (177)
T ss_dssp CCSSEEEEEEEBSSTTBB-HHHHHHHHCT---
T ss_pred hhCCEEEEEeeccccccCCceeeeehhhhccc
Confidence 45678999999999999999888888887743
No 75
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=35.82 E-value=61 Score=27.82 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=9.2
Q ss_pred ceeEEEEeecCCCccC
Q psy17663 116 SGIVTTATMHSKQEPA 131 (149)
Q Consensus 116 ~~~~~~iDlHs~s~~~ 131 (149)
.++.++|||| ||-.+
T Consensus 70 ~Gm~vlldfH-YSD~W 84 (332)
T PF07745_consen 70 AGMKVLLDFH-YSDFW 84 (332)
T ss_dssp TT-EEEEEE--SSSS-
T ss_pred CCCeEEEeec-ccCCC
Confidence 6899999999 54433
No 76
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=34.44 E-value=62 Score=28.37 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=29.6
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEee---------eCCCcccccc
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPM---------LNPDGVIVGN 63 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~---------~NPDG~~~g~ 63 (149)
++..|++..|+- ..+++.|+. ..+.+.++|. +||||..++|
T Consensus 179 ~~~Vv~iD~GvK----------~nIlr~L~~---------rg~~vtVVP~~t~~eeIl~~~pDGiflSN 228 (368)
T COG0505 179 GKHVVVIDFGVK----------RNILRELVK---------RGCRVTVVPADTSAEEILALNPDGIFLSN 228 (368)
T ss_pred CcEEEEEEcCcc----------HHHHHHHHH---------CCCeEEEEcCCCCHHHHHhhCCCEEEEeC
Confidence 456777777776 457777764 3477778884 7999999975
No 77
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=33.46 E-value=29 Score=24.08 Aligned_cols=16 Identities=19% Similarity=0.530 Sum_probs=14.2
Q ss_pred HHHHhhhCcEEEEEee
Q psy17663 38 QAKELREKFIFKLIPM 53 (149)
Q Consensus 38 ~~~~ll~~~~~~ivP~ 53 (149)
.+-++|+.|+|-+|||
T Consensus 65 AVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 65 AVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHhccCCceeeec
Confidence 4578999999999998
No 78
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=31.22 E-value=1e+02 Score=25.38 Aligned_cols=56 Identities=11% Similarity=0.073 Sum_probs=35.3
Q ss_pred CCcEEEEEcCcCCCCchHHHHHHHHHHHHhc---C---------------CHHHHHhhhCcEEEEEeeeCCCcccc
Q psy17663 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTG---D---------------SAQAKELREKFIFKLIPMLNPDGVIV 61 (149)
Q Consensus 4 ~k~~V~i~~~iHg~E~~~~~~~~~~i~~L~~---~---------------~~~~~~ll~~~~~~ivP~~NPDG~~~ 61 (149)
+||..+ ||++|++..+..-+...++.++. . ...+.++|...-..|+=+.+-+|..+
T Consensus 2 GKp~~~--GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~ 75 (254)
T cd05313 2 GKGLSW--GGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVY 75 (254)
T ss_pred CCCCcC--CCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEE
Confidence 566443 99999999988877777777643 1 11334555555566775555444443
No 79
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=29.50 E-value=42 Score=27.24 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=19.7
Q ss_pred CCCcEEEEEcCcCCCCchHHHHHHH
Q psy17663 3 HRKKAIVITSRVHPGETPSSWMMKG 27 (149)
Q Consensus 3 ~~k~~V~i~~~iHg~E~~~~~~~~~ 27 (149)
.+++.+++.+|+|+.|-....++.+
T Consensus 49 ~g~~Vv~~~~~iH~~~Gk~~a~i~~ 73 (249)
T TIGR01700 49 GGKPVVAMQGRFHMYEGYDMAKVTF 73 (249)
T ss_pred CCEEEEEEcCCccccCCcCHHHccH
Confidence 4688899999999999866665554
No 80
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=25.69 E-value=1.5e+02 Score=23.88 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=43.1
Q ss_pred cEEEEEcCcCCCCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCccccccccCCCCCCC
Q psy17663 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRD 72 (149)
Q Consensus 6 ~~V~i~~~iHg~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvD 72 (149)
+.++|.+.++|+...+......|++.+-..+|..+ +-..++.-.|+-=-|+....-+|+.+.|.+
T Consensus 3 kvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~de--v~~~DL~~e~iP~ld~~~~~a~~~~~~~~~ 67 (202)
T COG1182 3 KVLVIKASPLGENSVSRKLADEFIETYKEKHPNDE--VIERDLAAEPIPHLDEELLAAWFKPQAGEG 67 (202)
T ss_pred eEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCe--EEEeecccCCCcccCHHHHhcccCCccCCC
Confidence 57889999999999999999999999876444211 112334444554455655544666666554
No 81
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=25.48 E-value=4.2e+02 Score=24.43 Aligned_cols=34 Identities=15% Similarity=-0.115 Sum_probs=26.4
Q ss_pred HHhhhCcEEEEEeeeCCCccccccccCCCCCCCC
Q psy17663 40 KELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDL 73 (149)
Q Consensus 40 ~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDL 73 (149)
..+|+...=+-|-++||-|.+...|..|+.++|=
T Consensus 165 aw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~ 198 (541)
T cd01304 165 AWTLKASKGYGIKVVNPGGTEAWGWGQNVLSLDD 198 (541)
T ss_pred HHHHHhccceEEEEECCCchhhhccCCccccccC
Confidence 3566666667888999999998667888877773
No 82
>PF00838 TCTP: Translationally controlled tumour protein; InterPro: IPR018105 Mammalian translationally controlled tumour protein (TCTP) (or P23) is a protein which has been found to be preferentially synthesised in cells during the early growth phase of some types of tumour [, ], but which is also expressed in normal cells. The physiological function of TCTP is still not known. It was first identified as a histamine-releasing factor, acting in IgE +-dependent allergic reactions. In addition, TCTP has been shown to bind to tubulin in the cytoskeleton, has a high affinity for calcium, is the binding target for the antimalarial compound artemisinin, and is induced in vitamin D-dependent apoptosis. TCTP production is thought to be controlled at the translational as well as the transcriptional level []. TCTP is a hydrophilic protein of 18 to 20 kD. TCTPs do not share significant sequence similarity with any other class of proteins. Recently, the structure of TCTP was determined and exhibited significant structural similarity to the human protein Mss4, which is a guanine nucleotide-free chaperone of the Rab protein []. Close homologues have been found in plants [], earthworm [], Caenorhabditis elegans (F52H2.11), Hydra, Saccharomyces cerevisiae (YKL056c) [] and Schizosaccharomyces pombe (SpAC1F12.02c).; PDB: 2KWB_A 2LOY_A 1TXJ_A 1H6Q_A 1H7Y_A 3P3K_A 1YZ1_C 3EBM_D 2HR9_A.
Probab=24.79 E-value=67 Score=24.82 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=17.6
Q ss_pred hhCcEEEEEeeeCCCccc-ccccc
Q psy17663 43 REKFIFKLIPMLNPDGVI-VGNNR 65 (149)
Q Consensus 43 l~~~~~~ivP~~NPDG~~-~g~~R 65 (149)
.+++.|++=+.+||||.. +.++|
T Consensus 125 fkd~qFf~Gesm~~dgmv~l~~yr 148 (165)
T PF00838_consen 125 FKDYQFFTGESMDPDGMVALLNYR 148 (165)
T ss_dssp GGGCEEEEETTCCTTS-EEEEEEE
T ss_pred ccccccccccccCCCCcEEEEEec
Confidence 367889999999999964 44566
No 83
>PF05013 FGase: N-formylglutamate amidohydrolase; InterPro: IPR007709 Formylglutamate amidohydrolase (FGase) catalyzes the terminal reaction in the five-step pathway for histidine utilization in Pseudomonas putida. By this action, N-formyl-L-glutamate (FG) is hydrolyzed to produce L-glutamate plus formate [].; PDB: 2ODF_G 2Q7S_A.
Probab=24.61 E-value=80 Score=24.89 Aligned_cols=19 Identities=21% Similarity=0.004 Sum_probs=13.3
Q ss_pred ceeEEEEeecCCCccCcCc
Q psy17663 116 SGIVTTATMHSKQEPARIS 134 (149)
Q Consensus 116 ~~~~~~iDlHs~s~~~~~~ 134 (149)
.+..+.+|+||+.......
T Consensus 130 ~g~~illd~HS~~~~~~~~ 148 (222)
T PF05013_consen 130 FGKVILLDCHSMPPVPPGR 148 (222)
T ss_dssp CS-EEEEEEEEE-TCCCCC
T ss_pred cCceEEEEeccCCCccccc
Confidence 5778999999988776433
No 84
>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases.; PDB: 3D6K_C 3EZ1_A 3PPL_B.
Probab=22.93 E-value=58 Score=29.04 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=8.0
Q ss_pred EEEEEeee-CCCccccc
Q psy17663 47 IFKLIPML-NPDGVIVG 62 (149)
Q Consensus 47 ~~~ivP~~-NPDG~~~g 62 (149)
-++.||.+ ||+|+.++
T Consensus 175 GiWcVP~ySNPtG~tyS 191 (425)
T PF12897_consen 175 GIWCVPKYSNPTGITYS 191 (425)
T ss_dssp EEEE-SSS-TTT-----
T ss_pred eEEeCCCccCCCCccCC
Confidence 46788886 99999885
No 85
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=22.86 E-value=74 Score=24.73 Aligned_cols=42 Identities=17% Similarity=0.352 Sum_probs=25.9
Q ss_pred CcEEEEEcCcCC-CCchHHHHHHHHHHHHhcCCHHHHHhhhCcEEEEEeeeCCCcccc
Q psy17663 5 KKAIVITSRVHP-GETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIV 61 (149)
Q Consensus 5 k~~V~i~~~iHg-~E~~~~~~~~~~i~~L~~~~~~~~~ll~~~~~~ivP~~NPDG~~~ 61 (149)
.+-+++.+..|| .|| . .+..+ + ++|. -.+.|+|+.||--...
T Consensus 75 NsflvL~aalhg~~ew-~--~m~~i-q----------RFLG-~nl~ilpvhn~~~~v~ 117 (162)
T PF15162_consen 75 NSFLVLSAALHGPEEW-K--LMFRI-Q----------RFLG-SNLRILPVHNPANCVK 117 (162)
T ss_pred CceEEeehhhcCHHHH-H--HHHHH-H----------HHhc-CCceEEecCCHHHHHH
Confidence 355778888887 444 1 11112 3 4443 4568999999977654
No 86
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=21.16 E-value=5e+02 Score=24.05 Aligned_cols=35 Identities=20% Similarity=-0.037 Sum_probs=26.8
Q ss_pred HHhhhCcEEEEEeeeCCCccccccccCCCCCCCCC
Q psy17663 40 KELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLN 74 (149)
Q Consensus 40 ~~ll~~~~~~ivP~~NPDG~~~g~~R~n~~GvDLN 74 (149)
..+|+...=+-|-++||-|.+...|..|+.++|=.
T Consensus 169 aw~l~~tk~~giK~vnpgG~~a~~~~~~~~~~d~~ 203 (556)
T TIGR03121 169 AWLLKATKGYGIKVVNPGGVEAWGWGENVLSLDDP 203 (556)
T ss_pred HHHHHhccceEEEEECCCchhhhccCCccccccCC
Confidence 35666666778889999999986678888777743
No 87
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=20.78 E-value=82 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.8
Q ss_pred cEEEEEcCcCCCCchHHHHHHHHHHHHh
Q psy17663 6 KAIVITSRVHPGETPSSWMMKGFMDFLT 33 (149)
Q Consensus 6 ~~V~i~~~iHg~E~~~~~~~~~~i~~L~ 33 (149)
++|++...|||-|-.|.-....|.+.|-
T Consensus 348 ~rv~~sTTIhGYEGtGRgF~lkf~~~l~ 375 (758)
T COG1444 348 PRVLFSTTIHGYEGTGRGFSLKFLARLR 375 (758)
T ss_pred CceEEEeeecccccCChHHHHHHHHHhc
Confidence 6799999999999999999999999885
Done!