RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17663
(149 letters)
>4a37_A Metallo-carboxypeptidase; metallo-protease, hydrolase; 1.60A
{Pseudomonas aeruginosa} PDB: 4a38_A 4a39_A*
Length = 388
Score = 113 bits (284), Expect = 5e-31
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 1 MSHRKKAIVITSRVHPGETPSSWMMKGFMDFLT-GDSAQAKELREKFIFKLIPMLNPDGV 59
+ + ++ HPGE + W M+G ++ L D + + L EK L+P +NPDG
Sbjct: 166 HPDSHLKLWVIAQQHPGEHMAEWFMEGLIERLQRPDDTEMQRLLEKADLYLVPNMNPDGA 225
Query: 60 IVGNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRR 97
GN R + G+DLNR + E P VW + ++R
Sbjct: 226 FHGNLRTNAAGQDLNRAWLEPSAERSPEVWFVQQEMKR 263
>3k2k_A Putative carboxypeptidase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
2.49A {Burkholderia mallei atcc 23344}
Length = 403
Score = 109 bits (274), Expect = 1e-29
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 1 MSHRKKAIVITSRVHPGETPSSWMMKGFMDFLTG-----DSAQAKELREKFIFKLIPMLN 55
KK + I +R HPGE+ + W ++G + L G A++L + F ++P +N
Sbjct: 176 AGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMN 235
Query: 56 PDGVIVGNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRR 97
PDG + GN R + G +LNR++ E P V + I
Sbjct: 236 PDGSVHGNLRTNAAGANLNREWMEPDAERSPEVLVVRDAIHA 277
>3l2n_A Peptidase M14, carboxypeptidase A; putative carboxypeptidase A,
structural genomics, joint CENT structural genomics,
JCSG; 2.39A {Shewanella denitrificans}
Length = 395
Score = 109 bits (273), Expect = 2e-29
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 1 MSHRKKAIVITSRVHPGETPSSWMMKGFMDFLT-GDSAQAKELREKFIFKLIPMLNPDGV 59
KK+I IT+R HPGET + W+++G ++ L D +K L +K F ++P +NPDG
Sbjct: 171 DDPSKKSIWITARQHPGETMAEWLVEGLLNQLLDNDCPTSKALLDKANFYIVPNMNPDGS 230
Query: 60 IVGNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRK 98
+ G+ R + G +LNR+++T E P V++ +
Sbjct: 231 VRGHLRTNAVGANLNREWQTPSLERSPEVYYVVNKMHET 269
>2qvp_A Uncharacterized protein; putative metallopeptidase, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 2.00A {Shewanella amazonensis}
Length = 275
Score = 74.7 bits (183), Expect = 4e-17
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNN 64
++I++ H E+ W + + FL S EL ++ ++P++NP G G +
Sbjct: 65 LPNLLISAGFHGEESAGPWGL---LHFL---SQLDGELFKRVNLSVLPLVNPTGFAKG-H 117
Query: 65 RCSLTGRDLNRQYRTVIRETYP 86
R + G + NR + + P
Sbjct: 118 RFNELGENPNRGFFIENGKAKP 139
>3b2y_A Metallopeptidase containing CO-catalytic metalloa site;
metallopeptidase containing CO-catalytic metalloactive
site; 1.74A {Shewanella denitrificans OS217} PDB:
3ieh_A*
Length = 275
Score = 62.5 bits (151), Expect = 1e-12
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNN 64
+++I+S H E W M F+ L L E+ L+P++NP G G +
Sbjct: 66 LPSLLISSGFHGEEAAGPWGMLHFLRGL------QPALFERVNLSLLPLVNPTGFKAG-H 118
Query: 65 RCSLTGRDLNRQYRTVIRETYPP 87
R + G + NR + + P
Sbjct: 119 RFNRFGENPNRGFTLENGKPTPN 141
>1aye_A PCPA2, procarboxypeptidase A2; serine protease, zymogen, hydrolase;
1.80A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1 PDB: 1o6x_A
Length = 401
Score = 40.5 bits (95), Expect = 7e-05
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
K AI + + +H E T ++ W + G + + L+P+ NPDG +
Sbjct: 151 KPAIWLDAGIHAREWVTQATALWTANKIVS-DYGKDPSITSILDALDIFLLPVTNPDGYV 209
Query: 61 V--GNNR-------------CSLTGRDLNRQY 77
NR C G D NR +
Sbjct: 210 FSQTKNRMWRKTRSKVSGSLC--VGVDPNRNW 239
>1jqg_A Carboxypeptidase A; Pro-protein, hydrolase; 2.50A {Helicoverpa
armigera} SCOP: c.56.5.1 d.58.3.1
Length = 433
Score = 39.1 bits (91), Expect = 2e-04
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 20/91 (21%)
Query: 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI--- 60
K +++ S +H E + + L D ++ + + ++P+ NPDG +
Sbjct: 170 SKPVVMMQSLLHCREWVTLPATLYAIHKLVIDVTESDLI-NNIDWIILPVANPDGYVHTF 228
Query: 61 --------------VGNNRCSLTGRDLNRQY 77
+ N C G DLNR +
Sbjct: 229 GGDRYWRKNRATGYMAGNLC--MGVDLNRNF 257
>2bo9_A Carboxypeptidase A4; metallocarboxypeptidase, X-RAY endogenous
protein inhibitor, metalloprotease carboxypeptidase,
hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: c.56.5.1
PDB: 4a94_A 2pcu_A*
Length = 308
Score = 38.5 bits (90), Expect = 3e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 22/92 (23%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
+ A+ + + +H E + ++ W + + D A + EK L+P+ NPDG +
Sbjct: 58 RPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPA-ITSILEKMDIFLLPVANPDGYV 116
Query: 61 ---------------VGNNRCSLTGRDLNRQY 77
+ C G D NR +
Sbjct: 117 YTQTQNRLWRKTRSRNPGSSC--IGADPNRNW 146
>3prt_A Carboxypeptidase T; hydrolase; 1.66A {Thermoactinomyces vulgaris}
PDB: 1obr_A 3qnv_A
Length = 323
Score = 38.5 bits (90), Expect = 3e-04
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 22/93 (23%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVI- 60
+ ++ T+ H E + M +D T ++ L ++ +NPDG
Sbjct: 59 EPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEY 118
Query: 61 ----------------VGNNRCSLTGRDLNRQY 77
+ G DLNR Y
Sbjct: 119 DISSGSYKSWRKNRQPNSGSSY--VGTDLNRNY 149
>1dtd_A Carboxypeptidase A2; carboxypeptidase A2, leech carboxypeptidase
inhibitor, hydrolase/hydrolase inhibitor complex; HET:
GLU; 1.65A {Homo sapiens} SCOP: c.56.5.1
Length = 303
Score = 38.5 bits (90), Expect = 3e-04
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
K AI + + +H E T ++ W + D + + L+P+ NPDG +
Sbjct: 52 KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDP-SITSILDALDIFLLPVTNPDGYV 110
Query: 61 V--GNNRC------------SLTGRDLNRQY 77
NR G D NR +
Sbjct: 111 FSQTKNRMWRKTRSKVSAGSLCVGVDPNRNW 141
>1m4l_A Carboxypeptidase A; metalloproteinase, metalloexoproteinase,
hydrolase; 1.25A {Bos taurus} SCOP: c.56.5.1 PDB: 1cpx_A
1arl_A 1f57_A 2rfh_A* 3i1u_A* 1arm_A 1ell_P 1elm_P
1ee3_P 1zlh_A 2abz_A 3hlp_A 3huv_A 1yme_A* 3fvl_A*
3fx6_A* 2ctc_A* 1hdq_A 2ctb_A* 3kgq_A* ...
Length = 307
Score = 37.4 bits (87), Expect = 7e-04
Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 22/95 (23%)
Query: 2 SHRKKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPD 57
+ AI I +H E T ++ W K F + G + + L + NPD
Sbjct: 56 GSNRPAIWIDLGIHSREWITQATGVWFAKKFTE-DYGQDPSFTAILDSMDIFLEIVTNPD 114
Query: 58 GVI---------------VGNNRCSLTGRDLNRQY 77
G ++ C G D NR +
Sbjct: 115 GFAFTHSQNRLWRKTRSVTSSSLC--VGVDANRNW 147
>1z5r_A Procarboxypeptidase B; exopeptidase, hydrolase; 1.40A {Sus scrofa}
SCOP: c.56.5.1 PDB: 1zg7_A* 1zg8_A* 1zg9_A* 2jew_A*
2piy_A* 2piz_A* 2pj0_A* 2pj1_A* 2pj2_A* 2pj3_A* 2pj4_A*
2pj5_A* 2pj6_A* 2pj7_A* 2pj8_A* 2pj9_A* 2pja_A* 2pjb_A*
2pjc_A* 1zli_A ...
Length = 306
Score = 36.6 bits (85), Expect = 0.001
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 22/92 (23%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
K AI + H E + + W ++ + G + E K F ++P+LN DG I
Sbjct: 56 KPAIFMDCGFHAREWISHAFCQWFVREAVLT-YGYESHMTEFLNKLDFYVLPVLNIDGYI 114
Query: 61 ---------------VGNNRCSLTGRDLNRQY 77
C G D NR +
Sbjct: 115 YTWTKNRMWRKTRSTNAGTTC--IGTDPNRNF 144
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 36.4 bits (84), Expect = 0.002
Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 15/116 (12%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVIV 61
+ +H E ++ +++L G + +L + ++P +NPDG
Sbjct: 61 EPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEK 120
Query: 62 ----------GNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSS 107
G N + DLNR + + P L + K P S
Sbjct: 121 SQEGDRGGTVGRNNSN--NYDLNRNFPDQFFQVTDPPQPETLAVMSWLKTYPFVLS 174
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 36/124 (29%)
Query: 25 MKGFMDFLTGDSAQAKEL--------REKFIFKLIPMLNPDGVIVGNNRCSLT------- 69
M G MD S A+++ ++ + F ++ IV NN +LT
Sbjct: 1631 M-G-MDLYK-TSKAAQDVWNRADNHFKDTYGFSILD-------IVINNPVNLTIHFGGEK 1680
Query: 70 GRDLNRQYRTVIRETYPPVWHTKLLIRRKTKK--KPVQSSTGKMRFRKSGIVTTATMHSK 127
G+ + Y +I ET + KT+K K + + FR + +AT +
Sbjct: 1681 GKRIRENYSAMIFETIVD-------GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT- 1732
Query: 128 QEPA 131
Q PA
Sbjct: 1733 Q-PA 1735
Score = 27.3 bits (60), Expect = 2.4
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 1 MSHRKKAIV-----ITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLN 55
S RK + S H S + A +L +N
Sbjct: 409 FSERKLKFSNRFLPVASPFH-----SHLL------------VPASDL-----------IN 440
Query: 56 PDGVIVGNNRCSLTGRDLNRQYRTVIRETYPPVWHT 91
D + N S +D+ I PV+ T
Sbjct: 441 KD---LVKNNVSFNAKDIQ------I-----PVYDT 462
>3d4u_A Tafia, carboxypeptidase B2; protease-inhibitor complex,
glycoprotein, hydrolase, metal-binding, metalloprotease,
protease, secret zymogen; 1.70A {Bos taurus} PDB: 3lms_A
Length = 309
Score = 35.1 bits (81), Expect = 0.004
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
K A+ I +H E +P+ W + + G L + F ++P++N DG
Sbjct: 57 KNAMWIDCGIHAREWISPAFCLWFVGSVTYY-YGKEKMHTNLLKHMDFYIMPVVNVDGYD 115
Query: 61 ---------------VGNNRCSLTGRDLNRQY 77
N C G DLNR +
Sbjct: 116 YTWKKDRMWRKNRSLHEKNAC--VGTDLNRNF 145
>3dgv_A TAFI, carboxypeptidase B2; blood coagulation, fibrinolysis, protein
S glycoprotein, hydrolase, metal-binding,
metalloprotease, PR secreted, zymogen; HET: NAG NDG FUL
BMA; 2.50A {Bos taurus} PDB: 3osl_A 3d68_A* 3d66_A*
3d67_A*
Length = 401
Score = 35.2 bits (81), Expect = 0.005
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 22/92 (23%)
Query: 5 KKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
K A+ I +H E +P+ W + + + L + F ++P++N DG
Sbjct: 149 KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLL-KHMDFYIMPVVNVDGYD 207
Query: 61 V---------------GNNRCSLTGRDLNRQY 77
N C G DLNR +
Sbjct: 208 YTWKKDRMWRKNRSLHEKNAC--VGTDLNRNF 237
>2c1c_A Carboxypeptidase B; insect, metalloprotease, insensitive, plant
inhibitors, hydrolase; 2.3A {Helicoverpa zea} SCOP:
c.56.5.1
Length = 312
Score = 35.0 bits (81), Expect = 0.005
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 4 RKKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGV 59
K I I +H E +P S W + ++ +L EKF + L+P++NPDG
Sbjct: 55 NKPVIFIDGGIHAREWISPPSVTWAIHKLVE-----DVTENDLLEKFDWILLPVVNPDGY 109
Query: 60 I------------------VGNNRCSLTGRDLNRQY 77
+ C G D NR +
Sbjct: 110 KYTFTNERFWRKTRSTNNNPLSQIC--RGADGNRNF 143
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 34.8 bits (80), Expect = 0.006
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 18/91 (19%)
Query: 4 RKKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGV 59
R+ A+ + + +H E + ++ W + + D A L EK L+P+ NPDG
Sbjct: 153 RRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSIL-EKMDIFLLPVANPDGY 211
Query: 60 IV--GNNR-----------CSLTGRDLNRQY 77
+ NR S G D NR +
Sbjct: 212 VYTQTQNRLWRKTRSRNPGSSCIGADPNRNW 242
>1kwm_A Procarboxypeptidase B; hydrolase; HET: CIT; 1.60A {Homo sapiens}
SCOP: c.56.5.1 d.58.3.1 PDB: 3glj_A 1nsa_A 1pba_A
Length = 402
Score = 34.8 bits (80), Expect = 0.006
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 22/95 (23%)
Query: 2 SHRKKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPD 57
K AI + H E +P+ W ++ + + + L K F ++P+LN D
Sbjct: 148 GQNKPAIFMDCGFHAREWISPAFCQWFVREAVRTYGREIQVTELL-NKLDFYVLPVLNID 206
Query: 58 GVIV---------------GNNRCSLTGRDLNRQY 77
G I + C G D NR +
Sbjct: 207 GYIYTWTKSRFWRKTRSTHTGSSC--IGTDPNRNF 239
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc
peptidase, transthyretin-like domain, processing,
peptide modification, hydrolase; HET: NAG; 2.10A {Homo
sapiens}
Length = 439
Score = 34.6 bits (79), Expect = 0.007
Identities = 22/142 (15%), Positives = 45/142 (31%), Gaps = 20/142 (14%)
Query: 5 KKAIVITSRVHPGETPSS----WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI 60
+ + +H E + + + + + +L + ++P +NPDG
Sbjct: 57 EPEVKYVGNMHGNEALGRELMLQLSEFLCEEFRNRNQRIVQLIQDTRIHILPSMNPDGYE 116
Query: 61 V-----------GNNRCSLTGRDLNR----QYRTVIRETYPPVWHTKLLIRRKTKKKPVQ 105
V R + G DLNR + + L + K +
Sbjct: 117 VAAAQGPNKPGYLVGRNNANGVDLNRNFPDLNTYIYYNEKYGGPNHHLPLPDNWKSQVEP 176
Query: 106 SSTGKMRFRKS-GIVTTATMHS 126
+ +R+ S V +A +H
Sbjct: 177 ETRAVIRWMHSFNFVLSANLHG 198
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease,
zinc, lipoprotein, hydrolase, structural proteomics in
europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP:
b.3.2.1 c.56.5.1
Length = 426
Score = 33.8 bits (77), Expect = 0.015
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 31/136 (22%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVIV 61
+ +H ET ++ +D+L G + L ++P +NPDG
Sbjct: 56 IPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEA 115
Query: 62 ----------GNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSSTGKM 111
G + DLNR +P + + M
Sbjct: 116 VKKPDCYYSIGRENYN--QYDLNR--------NFPDAFEY-------NNVSRQPETVAVM 158
Query: 112 RFRKS-GIVTTATMHS 126
++ K+ V +A +H
Sbjct: 159 KWLKTETFVLSANLHG 174
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 33.2 bits (76), Expect = 0.020
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 22/95 (23%)
Query: 2 SHRKKAIVITSRVHPGE--TPSS--WMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPD 57
+ AI I S +H E T +S W K + G ++ + + L + NP+
Sbjct: 151 GSNRPAIWIDSGIHSREWITQASGVWFAKKITE-NYGQNSSFTAILDSMDIFLEIVTNPN 209
Query: 58 GVI---------------VGNNRCSLTGRDLNRQY 77
G + C G D NR +
Sbjct: 210 GFAFTHSDNRLWRKTRSKASGSLC--VGSDSNRNW 242
>2qj8_A MLR6093 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Length = 332
Score = 32.5 bits (73), Expect = 0.033
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNR 65
+++IT H E + + + +L E + ++P +NP V
Sbjct: 46 PSLLITGGNHGNELQGPILARRLVKWL-------PEAQRCGRIIIVPEINPLAVQAWTRN 98
Query: 66 CSLTGRDLNRQY 77
+ G++LNR +
Sbjct: 99 TPIDGKNLNRVF 110
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 32.6 bits (74), Expect = 0.035
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDG--- 58
+ + +H ET ++ +L + +L L+P +NPDG
Sbjct: 91 TPPVKYIANMHGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL 150
Query: 59 ----------VIVGNNRCSLTGRDLNRQY 77
VG + DLNR +
Sbjct: 151 SQEGNCESLPNYVGRGNAA--NIDLNRDF 177
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; HET: MSE; 2.00A
{Ruegeria SP}
Length = 331
Score = 32.5 bits (73), Expect = 0.036
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNR 65
K ++T H E ++ +A+++ + I +P N
Sbjct: 50 KTALLTGANHGDEYEGPVALQELAATT-----RAEDVTGRLII--VPYFNYPAFRASART 102
Query: 66 CSLTGRDLNRQY 77
+ +LNR +
Sbjct: 103 SPIDRGNLNRAF 114
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Rhodobacter
sphaeroides 2}
Length = 354
Score = 31.0 bits (69), Expect = 0.11
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 6 KAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNR 65
+++T VH E + L + +E++ + I +P +N +
Sbjct: 54 PTVLLTGGVHGDEYEGQIAISDLARRL-----RPEEVQGRVIM--LPAVNMPAIQSDTRL 106
Query: 66 CSLTGRDLNRQY 77
+ GRD+NR +
Sbjct: 107 SPVDGRDINRCF 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.83
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 36/111 (32%)
Query: 20 PSSWM----MKGF-MDFLTGDSAQAKELREKFIFK--------------LIPMLNPDGVI 60
P+ + + G ++ D + +++ K FK ++ ML
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 61 VGNNRCSLTGRDLNRQYRT----------VIRETYPP-------VWHTKLL 94
+ N S + N + R + + Y V + K
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 28.3 bits (64), Expect = 0.97
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 14 VHPG--ETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPM 53
V PG TP M+ G+ A E + + + PM
Sbjct: 180 VCPGTIMTP---MVIKAAKMEVGEDENAVERKIEEWGRQHPM 218
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 14 VHPG--ETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPM 53
V P +TP +++ + G E + PM
Sbjct: 173 VCPATIDTP---LVRKAAELEVGSDPMRIEKKISEWGHEHPM 211
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 27.2 bits (60), Expect = 2.1
Identities = 11/62 (17%), Positives = 16/62 (25%), Gaps = 1/62 (1%)
Query: 28 FMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYPP 87
D G +F L P G+ V N R + + E +
Sbjct: 164 IRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAG-MMEVFEH 222
Query: 88 VW 89
V
Sbjct: 223 VA 224
>3pme_A Type C neurotoxin; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, botulinum
neurotoxin; 1.56A {Clostridium botulinum} PDB: 3ogg_A
3n7j_A 3obr_A 3obt_A* 3rmx_A 3rmy_A
Length = 420
Score = 27.2 bits (59), Expect = 2.1
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 44 EKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYR 78
K NP I+ + +R+Y
Sbjct: 271 NPITIKSAANKNPYSRILNGDDIMFHMLYDSREYM 305
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore
formation, viral protein; NMR {Synthetic}
Length = 46
Score = 25.2 bits (54), Expect = 2.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 4 RKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQA 39
R+ A+ + S + P P + + +D+L GD AQA
Sbjct: 11 RRIAVPVVSTLFPPAAPLAHAIGEGVDYLLGDEAQA 46
>3lm2_A Putative kinase; structural genomics, joint center for struc
genomics, JCSG, protein structure initiative, PSI-2,
transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Length = 226
Score = 26.2 bits (58), Expect = 4.4
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 34 GDSAQAKELREKFIFKLIPMLNPDGVIVG 62
G++ K +++ + +L L PD V++G
Sbjct: 162 GNAKWQKRVQD-VVERLSAALEPDEVVIG 189
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A
{Escherichia coli} PDB: 3axf_A 1amf_A 1wod_A
Length = 237
Score = 25.7 bits (57), Expect = 6.9
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 26 KGFMDFLTGDSAQA 39
K F D+L G A
Sbjct: 214 KAFYDYLKGPQAAE 227
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex,
mutant K127S, metal binding protein; 1.55A {Xanthomonas
axonopodis PV} PDB: 2h5y_A
Length = 253
Score = 25.3 bits (56), Expect = 7.4
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 26 KGFMDFLTGDSAQA 39
F+ +L A+A
Sbjct: 230 AAFVSWLGSKPAKA 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,276,700
Number of extensions: 126330
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 44
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)