RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17663
(149 letters)
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 52.1 bits (124), Expect = 2e-09
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGV-- 59
+ +H ET ++ +D+L G + L ++P +NPDG
Sbjct: 56 IPEFKYVANMHGDETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEA 115
Query: 60 ------IVGNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRRKTKKKPVQSS 107
R + DLNR + + + + K + S
Sbjct: 116 VKKPDCYYSIGRENYNQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLS 169
>d1h8la2 c.56.5.1 (A:4-304) Carboxypeptidase D, catalytic domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 301
Score = 52.2 bits (124), Expect = 2e-09
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 11/110 (10%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVIV 61
+ +H E ++ +++L G + +L + ++P +NPDG
Sbjct: 61 EPEFKYIGNMHGNEVVGRELLLNLIEYLCKNFGTDPEVTDLVQSTRIHIMPSMNPDGYEK 120
Query: 62 GNNRCSLTGR--------DLNRQYRTVIRETYPPVWHTKLLIRRKTKKKP 103
DLNR + + P L + K P
Sbjct: 121 SQEGDRGGTVGRNNSNNYDLNRNFPDQFFQVTDPPQPETLAVMSWLKTYP 170
>d1jqga1 c.56.5.1 (A:1-310) Carboxypeptidase A {Cotton bollworm
(Helicoverpa armigera) [TaxId: 29058]}
Length = 317
Score = 41.0 bits (95), Expect = 2e-05
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVI--VG 62
K +++ S +H E + + L D +L + ++P+ NPDG + G
Sbjct: 62 KPVVMMQSLLHCREWVTLPATLYAIHKLVIDV-TESDLINNIDWIILPVANPDGYVHTFG 120
Query: 63 NNRCSLTGRDLNRQYRTVIRETYPP 87
+R R +
Sbjct: 121 GDRYWRKNRATGYMAGNLCMGVDLN 145
>d2c1ca1 c.56.5.1 (A:7-309) Carboxypeptidase B {Corn earworm
(Helicoverpa zea) [TaxId: 7113]}
Length = 312
Score = 39.8 bits (92), Expect = 4e-05
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 17/89 (19%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIV--- 61
K I I +H E S + + L D + +L EKF + L+P++NPDG
Sbjct: 56 KPVIFIDGGIHAREWISPPSVTWAIHKLVEDVTE-NDLLEKFDWILLPVVNPDGYKYTFT 114
Query: 62 -------------GNNRCSLTGRDLNRQY 77
G D NR +
Sbjct: 115 NERFWRKTRSTNNNPLSQICRGADGNRNF 143
>d1obra_ c.56.5.2 (A:) Carboxypeptidase T {Thermoactinomyces
vulgaris [TaxId: 2026]}
Length = 323
Score = 37.6 bits (86), Expect = 2e-04
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVIV 61
+ ++ T+ H E + M +D T ++ L ++ +NPDG
Sbjct: 59 EPEVLYTALHHAREHLTVEMALYTLDLFTQNYNLDSRITNLVNNREIYIVFNINPDGGEY 118
Query: 62 GNNRCSLTGRDLNRQY 77
+ S NRQ
Sbjct: 119 DISSGSYKSWRKNRQP 134
>d1ayea1 c.56.5.1 (A:1-309) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 307
Score = 37.5 bits (86), Expect = 2e-04
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 5 KKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDGVIV 61
K AI + + +H E + + + G + + L+P+ NPDG +
Sbjct: 57 KPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVF 116
Query: 62 G-------------NNRCSLTGRDLNRQYRT 79
+ G D NR +
Sbjct: 117 SQTKNRMWRKTRSKVSGSLCVGVDPNRNWDA 147
>d2bo9a1 c.56.5.1 (A:4-307) Carboxypeptidase A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 305
Score = 36.0 bits (82), Expect = 7e-04
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 3/88 (3%)
Query: 2 SHRKKAIVITSRVHPGETPSSWMMKGFMDFLT---GDSAQAKELREKFIFKLIPMLNPDG 58
R+ A+ + + +H E S + + EK L+P+ NPDG
Sbjct: 54 GVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDG 113
Query: 59 VIVGNNRCSLTGRDLNRQYRTVIRETYP 86
+ + L + +R + P
Sbjct: 114 YVYTQTQNRLWRKTRSRNPGSSCIGADP 141
>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007
{Vibrio cholerae [TaxId: 666]}
Length = 197
Score = 27.8 bits (61), Expect = 0.39
Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 8/104 (7%)
Query: 1 MSHRKKAIVITSRVHPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKL-------IPM 53
+ + A + T ++ A ++ ++ L I +
Sbjct: 64 IRDQVTARIQAGEPSCLATVEEISIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINL 123
Query: 54 LNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYPPVWHTKLLIRR 97
NP+ +++G + L IRE PV+H L +
Sbjct: 124 FNPEKILIG-GVINQAKSILYPSIEQCIREQSLPVYHQDLKLVE 166
>d1woqa2 c.55.1.10 (A:140-263) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 124
Score = 26.0 bits (57), Expect = 1.3
Identities = 8/67 (11%), Positives = 19/67 (28%), Gaps = 10/67 (14%)
Query: 7 AIVITSRVHPG-ETPSSWMMKGFMDFLTGDS---AQAKELRE------KFIFKLIPMLNP 56
A + ++ P E + + E ++ + + +P
Sbjct: 17 AFIFDGKLVPNAELGHLEIDGHDAETKASAVARERDGLSWDEYSVLLQRYFSHVEFLFSP 76
Query: 57 DGVIVGN 63
+ IVG
Sbjct: 77 ELFIVGG 83
>d1gx5a_ e.8.1.4 (A:) Viral RNA polymerase {Hepatitis C virus
[TaxId: 11103]}
Length = 530
Score = 24.0 bits (52), Expect = 8.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 52 PMLNPDGVIVGNNRCSLTG 70
P+ N G G RC +G
Sbjct: 265 PLTNSKGQNCGYRRCRASG 283
>d2ghra1 c.23.16.8 (A:17-297) Homoserine O-succinyltransferase HTS
(MetA) {Bacillus cereus [TaxId: 1396]}
Length = 281
Score = 23.8 bits (51), Expect = 8.9
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 15 HPGETPSSWMMKGFMDFLTGDSAQAKELREKFIFKL 50
H +++GF + ++ E+RE I ++
Sbjct: 154 HEVREQHVKLLQGFDELFFAPHSRHTEVRESDIREV 189
>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis
elegans [TaxId: 6239]}
Length = 312
Score = 23.9 bits (51), Expect = 9.6
Identities = 9/63 (14%), Positives = 16/63 (25%)
Query: 28 FMDFLTGDSAQAKELREKFIFKLIPMLNPDGVIVGNNRCSLTGRDLNRQYRTVIRETYPP 87
D + + L L DG++ L R+ +P
Sbjct: 184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA 243
Query: 88 VWH 90
V +
Sbjct: 244 VTY 246
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.132 0.387
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,669
Number of extensions: 24834
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 20
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.7 bits)