BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17671
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 173 bits (439), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 110/136 (80%), Gaps = 4/136 (2%)
Query: 67 KKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIF 126
++P++++ V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+F
Sbjct: 8 EQPVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVF 64
Query: 127 LLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFD 186
LLAGRKRKKS TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +
Sbjct: 65 LLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSST 124
Query: 187 RDEQVKVRQELAAIIY 202
E +RQELAA+ Y
Sbjct: 125 L-ESGTLRQELAAVCY 139
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Query: 77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7 VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66
Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ + E +RQE
Sbjct: 67 KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS-SSTLESGTLRQE 125
Query: 197 LAAIIY 202
LAA+ Y
Sbjct: 126 LAAVCY 131
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Query: 77 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7 VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66
Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ + E +RQE
Sbjct: 67 KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS-SSTLESGTLRQE 125
Query: 197 LAAIIY 202
LAA+ Y
Sbjct: 126 LAAVCY 131
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 106/158 (67%), Gaps = 28/158 (17%)
Query: 48 GVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDR 107
GVD G YF +E P E FVL PA Q + +CR+TRD+KG+DR
Sbjct: 10 GVDLGTENLYFQSME------PRE-----------FVLRPAPQGRTVRCRLTRDKKGMDR 52
Query: 108 GLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLLG 167
G+YP+YFLHL D KK+FLLAGRKRK+S T+NYLIS DPT+LSR GE+F+GKLRSNLLG
Sbjct: 53 GMYPSYFLHL--DTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRSNLLG 110
Query: 168 TQFTVYDNGSSRRR---VNIFDRDEQVKVRQELAAIIY 202
+FTV+DNG + +R N+ +RQELAA+IY
Sbjct: 111 NRFTVFDNGQNPQRGYSTNV------ASLRQELAAVIY 142
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 11/55 (20%)
Query: 8 FQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLE 62
FQS P E FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+
Sbjct: 20 FQSMEPRE-----------FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD 63
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/123 (61%), Positives = 96/123 (78%), Gaps = 11/123 (8%)
Query: 83 FVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYL 142
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL D KK+FLLAGRKRK+S T+NYL
Sbjct: 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHL--DTEKKVFLLAGRKRKRSKTANYL 61
Query: 143 ISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRR---VNIFDRDEQVKVRQELAA 199
IS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R N+ +RQELAA
Sbjct: 62 ISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNV------ASLRQELAA 115
Query: 200 IIY 202
+IY
Sbjct: 116 VIY 118
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 27 FVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLE 62
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+
Sbjct: 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD 39
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 140 NYLISTDPTDLSRKGESFVG-KLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQEL 197
Y ++ DP D RK E F+G K + +L Q Y G V ++ KVR+EL
Sbjct: 141 GYFLAKDPEDFWRKAEKFLGIKRKEDLKNIQIQEYVLG-----VPVYPHYFYSKVREEL 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,992,241
Number of Sequences: 62578
Number of extensions: 272597
Number of successful extensions: 966
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 12
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)