Query psy17671
Match_columns 248
No_of_seqs 184 out of 378
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502|consensus 100.0 4.9E-53 1.1E-57 392.6 14.4 176 59-241 83-287 (355)
2 PF01167 Tub: Tub family; Int 100.0 1.4E-47 3.1E-52 344.2 14.3 152 87-241 1-184 (246)
3 KOG2502|consensus 98.9 1.2E-09 2.6E-14 103.0 3.2 58 18-76 96-153 (355)
4 PF01167 Tub: Tub family; Int 98.2 7.6E-07 1.7E-11 80.7 1.8 36 31-66 1-36 (246)
5 PF04525 Tub_2: Tubby C 2; In 72.4 9 0.0002 32.7 5.4 105 64-175 35-144 (187)
6 PF12043 DUF3527: Domain of un 53.5 67 0.0014 31.2 7.9 74 90-175 5-108 (346)
7 COG3536 Uncharacterized protei 34.5 27 0.00058 28.9 1.8 52 11-66 38-98 (120)
8 PF07935 SSV1_ORF_D-335: ORF D 28.6 73 0.0016 24.4 3.1 20 97-123 8-29 (72)
9 PF12043 DUF3527: Domain of un 27.1 2.1E+02 0.0046 27.8 6.8 42 162-203 140-187 (346)
10 PF03803 Scramblase: Scramblas 25.1 1.9E+02 0.0041 25.0 5.6 29 151-179 111-141 (221)
No 1
>KOG2502|consensus
Probab=100.00 E-value=4.9e-53 Score=392.57 Aligned_cols=176 Identities=42% Similarity=0.607 Sum_probs=161.9
Q ss_pred cccccccCCCccccccccccchhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCC
Q psy17671 59 LHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTT 138 (248)
Q Consensus 59 l~le~~~~~kvfeLq~~i~~~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~t 138 (248)
|.....+.+++.+..+.++ ++.||+||+|+|.++||+|+|||+|+++||||.|++||+.+++ ++|||||||+|++||
T Consensus 83 ~r~~~~~~v~~~~~~~k~~--~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~-~kfLLaark~rr~~~ 159 (355)
T KOG2502|consen 83 WREISKEIVAPPEPSSKLT--FPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDN-KKFLLAARKRRRSKT 159 (355)
T ss_pred hhhhccccccCCccccccc--hhHHhcCCCCCCceEEEEEEEccCCCceeeeeccccccccccc-ceeeeeeeeeccccc
Confidence 5555678888898888887 9999999999999999999999999999999999999997554 469999999999999
Q ss_pred eeEEEEcCCCCCCCcccceeeeeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEE
Q psy17671 139 SNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICV 214 (248)
Q Consensus 139 SnYiIS~d~~dlSr~s~~yvGKLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~ 214 (248)
+|||||+|++||||++++|||||||||+||||||||+|.+|.+... ....+|+|||+|+|| |++|||||+|+
T Consensus 160 t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~~r~~~----~~~~~~~~la~V~Ye~NVLg~rGPRrM~~i 235 (355)
T KOG2502|consen 160 TNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNPSRRFN----KVPSGRQELAAVIYETNVLGFRGPRRMTVI 235 (355)
T ss_pred ceeEEeccccccccCccceeeeeecccccceEEEecCCCCcccccc----cCCcccceeeEEEEeeccccccCCceeEEe
Confidence 9999999999999999999999999999999999999999987643 357889999999999 99999999999
Q ss_pred eccccccc-------------------------cCceeeccccccceeeeee
Q psy17671 215 FVDITALL-------------------------SDFFAINFHLSRIFLHWQC 241 (248)
Q Consensus 215 iP~i~~~~-------------------------~d~~~l~~~~~~~~~~~~~ 241 (248)
||+|+.+. +...+|.++.|+||+++||
T Consensus 236 m~~i~~s~~~~~v~~q~~~~~~~~l~r~~~k~~e~~lvL~NK~P~wne~~q~ 287 (355)
T KOG2502|consen 236 MPGISPSAPGGRVPVQPENDHPSLLFRSQNKDKEGLLVLKNKTPRWNEETQS 287 (355)
T ss_pred ccCCCCCCCCCcccccccccccchhhhccccCcccceEeecCCCccccccce
Confidence 99999883 4578899999999999999
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=1.4e-47 Score=344.17 Aligned_cols=152 Identities=43% Similarity=0.719 Sum_probs=118.4
Q ss_pred cCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCCcccceeeeeecccc
Q psy17671 87 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSNLL 166 (248)
Q Consensus 87 P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr~s~~yvGKLRSNfl 166 (248)
|||+|++|||+|+|||+|+++++||.|+|||+.++|+ |||||||+++++||||+||+|++|+||++++|||||||||+
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~k--fLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~ 78 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGK--FLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFL 78 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSE--EEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TT
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCc--EEEeeeecccCCCcceEEecCCCccccCCCceeeeeccccc
Confidence 8999999999999999999999999999999987775 99999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccccc-------------------
Q psy17671 167 GTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITALLS------------------- 223 (248)
Q Consensus 167 GTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~~~------------------- 223 (248)
||+|||||+|.+|++.... .......|+|||+|+|+ |++|||||+|+||+|+.+.+
T Consensus 79 GT~F~iyD~g~~~~~~~~~-~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p~~~~~~~~~ 157 (246)
T PF01167_consen 79 GTEFTIYDNGPNPKKSKSI-SPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQPLNQEKDSLL 157 (246)
T ss_dssp SSEEEEEESSB-CCCSTCC-TSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-----SS-CCCSHH
T ss_pred eeEEEEECCCCCCcccccc-CcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeeecccccccccc
Confidence 9999999999999886532 23457889999999999 88999999999999865554
Q ss_pred ---------Cceeeccccccceeeeee
Q psy17671 224 ---------DFFAINFHLSRIFLHWQC 241 (248)
Q Consensus 224 ---------d~~~l~~~~~~~~~~~~~ 241 (248)
+..+|-.+.|.|.+..+|
T Consensus 158 ~~~~~~~~~~~~~l~~k~P~w~~~~~~ 184 (246)
T PF01167_consen 158 SRFQNKKKDELIVLKNKPPRWNEELQS 184 (246)
T ss_dssp HHHHCT-TTSEEEEEE---EEETTTTE
T ss_pred ccccccCCcceEEEecCCCcEeccCCe
Confidence 155666666888877776
No 3
>KOG2502|consensus
Probab=98.86 E-value=1.2e-09 Score=103.01 Aligned_cols=58 Identities=31% Similarity=0.538 Sum_probs=51.9
Q ss_pred cccccccccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCcccccccc
Q psy17671 18 GEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEV 76 (248)
Q Consensus 18 ~~~~~~~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq~~i 76 (248)
+..+.+++.++++|+|+|.+++|+|+||+.|||+||||+||+|++.+|+ +.|.|++.-
T Consensus 96 ~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~-~kfLLaark 153 (355)
T KOG2502|consen 96 PSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDN-KKFLLAARK 153 (355)
T ss_pred cccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeeccccccccccc-ceeeeeeee
Confidence 3457789999999999999999999999999999999999999999888 777776543
No 4
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=98.15 E-value=7.6e-07 Score=80.65 Aligned_cols=36 Identities=44% Similarity=0.905 Sum_probs=28.1
Q ss_pred ccCCCceeEEEEccCCCCcCCCcccccccccccccC
Q psy17671 31 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYG 66 (248)
Q Consensus 31 Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~ 66 (248)
|+|+|..|+|+|.||+.|++++|||+|++++|.+++
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~ 36 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENG 36 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCC
Confidence 899999999999999999999999999999996655
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=72.43 E-value=9 Score=32.72 Aligned_cols=105 Identities=17% Similarity=0.255 Sum_probs=41.0
Q ss_pred ccCCCcccccc-cccc-chhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeec-cCCCCee
Q psy17671 64 DYGKKPIEMQG-EVVG-NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKR-KKSTTSN 140 (248)
Q Consensus 64 ~~~~kvfeLq~-~i~~-~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKr-k~s~tSn 140 (248)
++|..+|.+.+ .+-. .-+..|+-+ .+..-..|+|..-+ +.|+|..|...+...+..+...||. .-...++
T Consensus 35 ~~G~~vf~V~g~~~~s~~~~~~l~D~---~G~~L~~i~~k~~~----l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~ 107 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSIGKKRTLMDA---SGNPLFTIRRKLFS----LRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDS 107 (187)
T ss_dssp TTS-EEEEEE--SCTTBTTEEEEE-T---TS-EEEEEE------------EEEEEETT---GGGEEEEEE----------
T ss_pred CCCCEEEEEEEecccCCCCEEEEECC---CCCEEEEEEeeecc----cceEEEEEECCCCccCceEEEEEEecccCCCcc
Confidence 35566777666 3321 112233432 34455688775433 6799999997543213466776666 1122233
Q ss_pred EEEEcCCC-CCC-CcccceeeeeeccccccEEEEecC
Q psy17671 141 YLISTDPT-DLS-RKGESFVGKLRSNLLGTQFTVYDN 175 (248)
Q Consensus 141 YiIS~d~~-dlS-r~s~~yvGKLRSNflGTkFtiYD~ 175 (248)
..+.+.+. ..+ -+++..-=+|+.|+++-.|+|||.
T Consensus 108 ~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~ 144 (187)
T PF04525_consen 108 FDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDS 144 (187)
T ss_dssp EEEEET--T----------SEEEES-TTTT--EEEEC
T ss_pred eeEEEecccceeecCCCCceEEEEEEecCcEEEEEEc
Confidence 34443321 110 122333457899999999999974
No 6
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=53.50 E-value=67 Score=31.19 Aligned_cols=74 Identities=15% Similarity=0.344 Sum_probs=43.1
Q ss_pred CceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCC----C--CeeEEEEc-CC---C---CCC-----
Q psy17671 90 QKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS----T--TSNYLIST-DP---T---DLS----- 151 (248)
Q Consensus 90 ~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s----~--tSnYiIS~-d~---~---dlS----- 151 (248)
..+.+||.++ .|+ |.|.+-++.. + =+|||+-++.. . ..-|.+-. +. . -++
T Consensus 5 ~qalLq~t~K---NG~-----P~F~Fsvd~~--~--~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~ 72 (346)
T PF12043_consen 5 LQALLQCTWK---NGL-----PLFEFSVDNP--E--EVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKN 72 (346)
T ss_pred eeEEEEEEEe---CCe-----EEEEEEeCCc--c--cEEEEEEeecccccccccceEEEEEeeccccccccccccccccc
Confidence 3567888876 553 8888877642 2 35566555533 2 34455533 21 1 111
Q ss_pred Ccccceeeeeec-----------cc-cccEEEEecC
Q psy17671 152 RKGESFVGKLRS-----------NL-LGTQFTVYDN 175 (248)
Q Consensus 152 r~s~~yvGKLRS-----------Nf-lGTkFtiYD~ 175 (248)
+...+.||+++= +. +-|||++||.
T Consensus 73 k~~~~iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 73 KSSSNIVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred cCCcceEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 123469999862 23 7789999994
No 7
>COG3536 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.47 E-value=27 Score=28.95 Aligned_cols=52 Identities=29% Similarity=0.384 Sum_probs=37.3
Q ss_pred CCCcccccccccccccccccccCCCceeE---------EEEccCCCCcCCCcccccccccccccC
Q psy17671 11 CPPIEMQGEVVGNLERFVLEPAAQKVSYK---------CRITRDRKGVDRGLYPTYFLHLERDYG 66 (248)
Q Consensus 11 ~~~~~~~~~~~~~~~~~v~~Pa~~g~~v~---------critrdk~g~dkg~~p~y~l~le~~~~ 66 (248)
||.++.+ .+.+.+-|+.|+.+++.+. -+|+= .+|=|.|+|+--|||-+..++
T Consensus 38 sPsAEvq---ghgp~q~v~v~gkr~V~i~~i~p~GnYavri~F-dDgHDsGiy~W~YL~~lg~~~ 98 (120)
T COG3536 38 SPSAEVQ---GHGPGQRVLVPGKRNVQIRDIEPVGNYAVRILF-DDGHDSGIYTWAYLHELGEEK 98 (120)
T ss_pred CchHHhc---ccCCCCceeeeccccceEEEeEecCceEEEEEe-cCCcccCcccHHHHHHHhhhh
Confidence 5666522 5677888999999988543 34444 467899999988999776554
No 8
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=28.62 E-value=73 Score=24.35 Aligned_cols=20 Identities=35% Similarity=0.600 Sum_probs=13.9
Q ss_pred EEEEcCCCCCCCCcceeeeeee-e-cCCc
Q psy17671 97 RITRDRKGVDRGLYPTYFLHLE-R-DYGK 123 (248)
Q Consensus 97 ~I~R~k~g~~~gl~PtY~LyLe-~-~~gk 123 (248)
+|.|+++| .||+|+- . ++|+
T Consensus 8 ~~irE~KG-------kYYVY~iE~~~~G~ 29 (72)
T PF07935_consen 8 IIIRERKG-------KYYVYKIEKDINGE 29 (72)
T ss_pred EEEEEeCC-------eEEEEEEEeccCCc
Confidence 57788887 7888874 4 4454
No 9
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=27.08 E-value=2.1e+02 Score=27.78 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=26.0
Q ss_pred eccccccEEEEecCCCCCccCCccc------cccccccceeEEEEEEc
Q psy17671 162 RSNLLGTQFTVYDNGSSRRRVNIFD------RDEQVKVRQELAAIIYV 203 (248)
Q Consensus 162 RSNflGTkFtiYD~G~~p~k~~~~~------~~~~~~~R~ELg~V~Ye 203 (248)
-|.|-++..++.+...+|....... ......+..|||||.-+
T Consensus 140 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~n~ElAAiVvk 187 (346)
T PF12043_consen 140 ISRFSGSSAILEDKSQEPFQNNSDNSESVPLLENDLPPNLELAAIVVK 187 (346)
T ss_pred ccccCCcchhhhhhccccccccccccccCccccccCCCCceEEEEEEe
Confidence 3567788888888755553322100 11235668999999865
No 10
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=25.14 E-value=1.9e+02 Score=25.01 Aligned_cols=29 Identities=14% Similarity=0.409 Sum_probs=23.6
Q ss_pred CCcccceeeeeec--cccccEEEEecCCCCC
Q psy17671 151 SRKGESFVGKLRS--NLLGTQFTVYDNGSSR 179 (248)
Q Consensus 151 Sr~s~~yvGKLRS--NflGTkFtiYD~G~~p 179 (248)
....+.+||+++- ++.+.+|.|+|...++
T Consensus 111 ~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~ 141 (221)
T PF03803_consen 111 ESPPGNLIGSIRQPFSCCRPNFDIFDANGNP 141 (221)
T ss_pred ecCCCcEEEEEEEcCcccceEEEEEECCCce
Confidence 4567889999988 5579999999987653
Done!