Query psy17671
Match_columns 248
No_of_seqs 184 out of 378
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:00:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 100.0 7.2E-52 2.5E-56 371.1 15.9 157 80-241 1-184 (246)
2 2fim_A Tubby related protein 1 100.0 1.8E-51 6.3E-56 373.8 15.4 163 73-241 19-208 (276)
3 3c5n_A Tubby-related protein 1 99.0 8.9E-11 3.1E-15 105.0 3.0 49 24-74 1-49 (246)
4 2fim_A Tubby related protein 1 98.9 1.6E-10 5.4E-15 105.0 2.1 53 19-73 20-72 (276)
5 1zxu_A AT5G01750 protein; PFAM 55.1 26 0.00088 29.3 6.4 102 64-175 59-162 (217)
6 3bid_A UPF0339 protein NMB1088 9.2 4.1E+02 0.014 18.4 4.1 26 95-129 2-27 (64)
7 1b5f_B Protein (cardosin A); h 7.8 1.6E+02 0.0053 20.6 1.4 17 161-177 62-78 (87)
8 2brf_A Bifunctional polynucleo 6.4 5.2E+02 0.018 19.8 3.9 24 160-183 52-75 (110)
9 1zxu_A AT5G01750 protein; PFAM 6.1 1.1E+03 0.036 19.1 6.6 58 114-176 77-137 (217)
10 2lmi_A GRSF-1, G-rich sequence 5.2 1.6E+02 0.0056 20.9 0.3 30 79-108 27-56 (107)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=7.2e-52 Score=371.12 Aligned_cols=157 Identities=48% Similarity=0.805 Sum_probs=128.0
Q ss_pred hhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCCcccceee
Q psy17671 80 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVG 159 (248)
Q Consensus 80 l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr~s~~yvG 159 (248)
|++||++|+|+|++|||+|+|||+|+++|+||+||||++.++ ++|||||||+++++||||+||+|++||||++++|||
T Consensus 1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~--~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvG 78 (246)
T 3c5n_A 1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEK--KVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIG 78 (246)
T ss_dssp CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESSSS--CCEEEEEEECTTCSSCEEEEESCTTC------CEEE
T ss_pred ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeCCC--cEEEEeeeeccCCCCceEEEEeCccccccCCceEEE
Confidence 579999999999999999999999999999999999998643 469999999999999999999999999999999999
Q ss_pred eeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccc--------------
Q psy17671 160 KLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITAL-------------- 221 (248)
Q Consensus 160 KLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~-------------- 221 (248)
||||||+||+|+|||+|.+|.++.+ .+....|+|||+|+|| +.+|||+|+|+||+++..
T Consensus 79 KLrsNf~Gt~F~iyD~g~~p~~~~s---~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~~~~~~~p~~~~~~ 155 (246)
T 3c5n_A 79 KLRSNLLGNRFTVFDNGQNPQRGYS---TNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDG 155 (246)
T ss_dssp EEEECSSSSEEEEECSCBCGGGCTT---SCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTSCBCCCCCSSTTSS
T ss_pred EEEEccCCCEEEEECCCCCcccccC---cccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeeccCCCcccc
Confidence 9999999999999999999987653 2356889999999999 889999999999998421
Q ss_pred ---------ccCceeeccccccceeeeee
Q psy17671 222 ---------LSDFFAINFHLSRIFLHWQC 241 (248)
Q Consensus 222 ---------~~d~~~l~~~~~~~~~~~~~ 241 (248)
..+..+|..+.|+|+|++||
T Consensus 156 ~~~~~~~~~~~~~~~l~nK~P~w~e~~~~ 184 (246)
T 3c5n_A 156 LLVRWQNKTLESLIELHNKPPVWNDDSGS 184 (246)
T ss_dssp HHHHHHHTCCTTEEEEEECCCEEETTTTE
T ss_pred chhhhhccCCcceEEEeccCCcccccCCE
Confidence 13578899999999999998
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.8e-51 Score=373.83 Aligned_cols=163 Identities=46% Similarity=0.759 Sum_probs=125.9
Q ss_pred ccccccchhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCC
Q psy17671 73 QGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSR 152 (248)
Q Consensus 73 q~~i~~~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr 152 (248)
..++. ||++||++|+|++++|||+|+|+|+|+++|+||+|||||+.+++ +|||||||+++++||||+||+|++||||
T Consensus 19 ~~~~~-~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~--~fLLaarK~k~~~ts~YiIS~d~~dlsr 95 (276)
T 2fim_A 19 YFQSM-EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKK--VFLLAGRKRKRSKTANYLISIDPTNLSR 95 (276)
T ss_dssp -------CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSC--EEEEEEEECTTCSSCEEEEESCTTC---
T ss_pred ccCHH-HHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCC--EEEEEEEeccCCCCceEEEEecchhccc
Confidence 34555 89999999999999999999999999999999999999986554 5999999999999999999999999999
Q ss_pred cccceeeeeeccccccEEEEecCCCCCccCCccccccccccceeEEEEEEc----cCCCceEEEEEecccccc-------
Q psy17671 153 KGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYV----SIKSNREFICVFVDITAL------- 221 (248)
Q Consensus 153 ~s~~yvGKLRSNflGTkFtiYD~G~~p~k~~~~~~~~~~~~R~ELg~V~Ye----g~~GPRkM~v~iP~i~~~------- 221 (248)
++++|||||||||+||+|+|||+|.+|+++.+ .+....|+|||+|+|| +.+|||+|+|+||+++..
T Consensus 96 ~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s---~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~~~~~~~~~ 172 (276)
T 2fim_A 96 GGENFIGKLRSNLLGNRFTVFDNGQNPQRGYS---TNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIR 172 (276)
T ss_dssp ---CEEEEEEECSSSSEEEEECSSBCGGGCTT---SCGGGBCCEEEEEEEC---------CCEEEEEECBCTTSCBCCCC
T ss_pred CCceEEEEEEEccCCCEEEEECCCCCcccccC---cccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeccc
Confidence 99999999999999999999999999987653 2356789999999999 889999999999987421
Q ss_pred ----------------ccCceeeccccccceeeeee
Q psy17671 222 ----------------LSDFFAINFHLSRIFLHWQC 241 (248)
Q Consensus 222 ----------------~~d~~~l~~~~~~~~~~~~~ 241 (248)
..+..+|..+.|+|+|++||
T Consensus 173 p~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~ 208 (276)
T 2fim_A 173 PRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGS 208 (276)
T ss_dssp CSSTTCSHHHHHHHTCCTTEEEEEECCCEEETTTTE
T ss_pred CCCcccccchhhhccCCcceEeeeccCCcccccCCE
Confidence 13478899999999999998
No 3
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=99.01 E-value=8.9e-11 Score=105.02 Aligned_cols=49 Identities=53% Similarity=1.016 Sum_probs=37.4
Q ss_pred cccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCcccccc
Q psy17671 24 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQG 74 (248)
Q Consensus 24 ~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq~ 74 (248)
|++|+++|+|+|.+++|+|+||++|+|+|+||+||||+|. +++.|.|+.
T Consensus 1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~--~~~~fLlaa 49 (246)
T 3c5n_A 1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLAG 49 (246)
T ss_dssp CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESS--SSCCEEEEE
T ss_pred ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeC--CCcEEEEee
Confidence 6899999999999999999999999999999999999983 455666643
No 4
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=98.95 E-value=1.6e-10 Score=105.01 Aligned_cols=53 Identities=47% Similarity=0.842 Sum_probs=35.7
Q ss_pred ccccccccccccccCCCceeEEEEccCCCCcCCCcccccccccccccCCCccccc
Q psy17671 19 EVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQ 73 (248)
Q Consensus 19 ~~~~~~~~~v~~Pa~~g~~v~critrdk~g~dkg~~p~y~l~le~~~~~kvfeLq 73 (248)
.+++|+++|+.+|+|+|.+++|+|+||++|+++|+||+||||++. +.+.|.|+
T Consensus 20 ~~~~~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~--~~~~fLLa 72 (276)
T 2fim_A 20 FQSMEPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT--EKKVFLLA 72 (276)
T ss_dssp -----CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECS--SSCEEEEE
T ss_pred cCHHHHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeC--CCCEEEEE
Confidence 358899999999999999999999999999999999999999984 33455543
No 5
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=55.08 E-value=26 Score=29.32 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=50.8
Q ss_pred ccCCCcccccccccc-chhhhhcccCCCceeEEEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEeeeecc-CCCCeeE
Q psy17671 64 DYGKKPIEMQGEVVG-NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRK-KSTTSNY 141 (248)
Q Consensus 64 ~~~~kvfeLq~~i~~-~l~~fl~~P~P~~~~vqC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLAARKrk-~s~tSnY 141 (248)
++|..+|.+.+..-. .-+..|.-. .+..-..|+|..-+ +.++|.+|..++...+..|...||.. .+-.+.|
T Consensus 59 ~~G~~vf~V~~~~~~~~~~~~l~D~---~G~~l~~i~rk~~~----~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~ 131 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGLHDKRVLLDG---SGTPVVTLREKMVS----MHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKL 131 (217)
T ss_dssp TTSCEEEEEECSSTTCCSEEEEECT---TSCEEEEEEC----------CEEEEEETTCCCGGGEEEEEEC-------CCE
T ss_pred CCCCEEEEEEccccCCCCEEEEECC---CCCEEEEEEccccc----cCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeE
Confidence 346667766554210 011122221 13444678775433 56899998854321123666777652 1234568
Q ss_pred EEEcCCCCCCCcccceeeeeeccccccEEEEecC
Q psy17671 142 LISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDN 175 (248)
Q Consensus 142 iIS~d~~dlSr~s~~yvGKLRSNflGTkFtiYD~ 175 (248)
-|....+. ..+...| ++..|++...|.|+|.
T Consensus 132 ~V~~~~~~-~~~~~~~--~I~G~~~~~~f~I~~~ 162 (217)
T 1zxu_A 132 DVFLGHNK-DEKRCDF--RVKGSWLERSCVVYAG 162 (217)
T ss_dssp EEEETTCC-C-CCCSE--EEESCTTTTCCEEEET
T ss_pred EEEECCCC-CCCceEE--EEEEeEeCCEEEEEEC
Confidence 88764321 1112223 7788999999999987
No 6
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=9.21 E-value=4.1e+02 Score=18.40 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCCCCCcceeeeeeeecCCceEEEEe
Q psy17671 95 KCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLA 129 (248)
Q Consensus 95 qC~I~R~k~g~~~gl~PtY~LyLe~~~gk~~fLLA 129 (248)
+--|.+++.| .|+.-|...||+ .|++
T Consensus 2 ~Fei~~~~~G-------~frfrLka~NGe--vI~s 27 (64)
T 3bid_A 2 YFEIYKDAKG-------EYRWRLKAANHE--IIAQ 27 (64)
T ss_dssp EEEEEECTTS-------CEEEEEECTTSC--EEEE
T ss_pred EEEEEECCCC-------CEEEEEEeCCCC--EEEE
Confidence 3456777776 677777777776 5554
No 7
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=7.79 E-value=1.6e+02 Score=20.55 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=13.8
Q ss_pred eeccccccEEEEecCCC
Q psy17671 161 LRSNLLGTQFTVYDNGS 177 (248)
Q Consensus 161 LRSNflGTkFtiYD~G~ 177 (248)
|-..|+..-|+|||.+.
T Consensus 62 LGd~Fl~~~y~vfD~~~ 78 (87)
T 1b5f_B 62 LGDVFMRPYHTVFDYGN 78 (87)
T ss_dssp ECHHHHTTEEEEEETTT
T ss_pred echHHhccEEEEEECCC
Confidence 44579999999999863
No 8
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=6.43 E-value=5.2e+02 Score=19.78 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=19.4
Q ss_pred eeeccccccEEEEecCCCCCccCC
Q psy17671 160 KLRSNLLGTQFTVYDNGSSRRRVN 183 (248)
Q Consensus 160 KLRSNflGTkFtiYD~G~~p~k~~ 183 (248)
+|++|.-+-..+|-|-|.||...+
T Consensus 52 ~L~ad~~~~~v~vk~lG~Np~~vn 75 (110)
T 2brf_A 52 ELVADPETRTVAVKQLGVNPSTTG 75 (110)
T ss_dssp EEEEETTTTEEEEEECSSSCCEEC
T ss_pred EEEEecCCCEEEEEEcccCCcEEC
Confidence 488888888999999999986543
No 9
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=6.06 E-value=1.1e+03 Score=19.10 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=29.2
Q ss_pred eeeeeecCCceEEEEeeeeccCCCCeeEEEEcCCCCCCCcccceeeeeecc--c-cccEEEEecCC
Q psy17671 114 FLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTDLSRKGESFVGKLRSN--L-LGTQFTVYDNG 176 (248)
Q Consensus 114 ~LyLe~~~gk~~fLLAARKrk~s~tSnYiIS~d~~dlSr~s~~yvGKLRSN--f-lGTkFtiYD~G 176 (248)
.++|-..+|+ -|+.-|++..+-...|-|.... .- ....-||.+|.. + ++++|.|.+.+
T Consensus 77 ~~~l~D~~G~--~l~~i~rk~~~~~~~~~v~~~~-~~--~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 77 KRVLLDGSGT--PVVTLREKMVSMHDRWQVFRGG-ST--DQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp EEEEECTTSC--EEEEEEC------CEEEEEETT-CC--CGGGEEEEEEC-------CCEEEEETT
T ss_pred EEEEECCCCC--EEEEEEccccccCcEEEEEcCC-CC--CCCcEEEEEEEeccccCCCeEEEEECC
Confidence 4444444565 5666666544545667776422 11 123468888764 4 57899999875
No 10
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=5.16 E-value=1.6e+02 Score=20.95 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=22.4
Q ss_pred chhhhhcccCCCceeEEEEEEEcCCCCCCC
Q psy17671 79 NLERFVLEPAAQKVSYKCRITRDRKGVDRG 108 (248)
Q Consensus 79 ~l~~fl~~P~P~~~~vqC~I~R~k~g~~~g 108 (248)
++++|+.+-++.+....|.|.+++.|..+|
T Consensus 27 ~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G 56 (107)
T 2lmi_A 27 DVLNFFSDCRIRNGENGIHFLLNRDGKRRG 56 (107)
T ss_dssp HHHHHTTTSCBTTTTTTEECCCCTTSTTCS
T ss_pred HHHHHHHhcCCcCCcceEEEEECCCCCEee
Confidence 788888876665556778899998876554
Done!