RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17671
(248 letters)
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel,
filled-beta-roll, 12-stran barrel, helix-filled-barrel,
retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens}
PDB: 1s31_A*
Length = 276
Score = 124 bits (312), Expect = 1e-34
Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 9/141 (6%)
Query: 79 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTT 138
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+ + KK+FLLAGRKRK+S T
Sbjct: 24 EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKT 81
Query: 139 SNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELA 198
+NYLIS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R + +RQELA
Sbjct: 82 ANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVA---SLRQELA 138
Query: 199 AIIYVSIKSN----REFICVF 215
A+IY + R +
Sbjct: 139 AVIYETNVLGFRGPRRMTVII 159
Score = 54.0 bits (129), Expect = 7e-09
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 23 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 64
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+ +
Sbjct: 24 EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE 65
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative
splicing, disease mutation, polymorphism, retinitis
pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo
sapiens} PDB: 1i7e_A* 1c8z_A
Length = 246
Score = 122 bits (306), Expect = 5e-34
Identities = 74/121 (61%), Positives = 96/121 (79%), Gaps = 5/121 (4%)
Query: 82 RFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNY 141
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+ + KK+FLLAGRKRK+S T+NY
Sbjct: 3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE--KKVFLLAGRKRKRSKTANY 60
Query: 142 LISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAII 201
LIS DPT+LSR GE+F+GKLRSNLLG +FTV+DNG + +R + +RQELAA+I
Sbjct: 61 LISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVA---SLRQELAAVI 117
Query: 202 Y 202
Y
Sbjct: 118 Y 118
Score = 52.1 bits (124), Expect = 2e-08
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 26 RFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERD 64
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+ +
Sbjct: 3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTE 41
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 2e-04
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 59/228 (25%)
Query: 39 KCRI---TRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFV------LEPAA 89
C+I TR K V L H+ D+ + EV L +++ L
Sbjct: 265 SCKILLTTRF-KQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPREV 322
Query: 90 QKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKSTTSNYLISTDPTD 149
+ P L ++A R T + +
Sbjct: 323 LTTN-----------------P---RRLS--------IIAESIRDGLATWDNWKHVNCDK 354
Query: 150 LSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQELAAIIYVSIKSN- 208
L+ ES + L F R+++F + L ++I+ + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF---------DRLSVFPPS--AHIPTILLSLIWFDVIKSD 403
Query: 209 -REFICVFVDITALLSDFFAINFHLSRIFLHWQCR-------HWSLLD 248
+ + + + I+L + + H S++D
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Score = 30.2 bits (67), Expect = 0.70
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 3 YSKFTFQSCPPIEMQGEVVGNLERFVLEPAAQKVSYKCR 41
Y + + P E +V + F+ + + K
Sbjct: 530 YKPYICDNDPKYE---RLVNAILDFLPKIEENLICSKYT 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.003
Identities = 31/170 (18%), Positives = 60/170 (35%), Gaps = 46/170 (27%)
Query: 41 RITRDRKGVDRGLYPTYFLHLERDYGKKPIEMQGEVVGNLERFVLEPAAQKVSYKCRITR 100
I D + G+ P+ L + + ++ ++ + V + PA ++V
Sbjct: 322 SILEDSLENNEGV-PSPMLSI-SNLTQEQVQ---DYVNKTNSHL--PAGKQVEISLVNGA 374
Query: 101 DR---KGVDRGLYPTYFLHLER-------DYGKKIFLLAGRKRKKSTTSNYL-ISTDP-- 147
G + LY L L + D + F +RK ++ +L +++ P
Sbjct: 375 KNLVVSGPPQSLY-GLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVAS-PFH 428
Query: 148 ------------TDLSRKGESFVGKLRSNLLGTQFTVYD--NGSSRRRVN 183
DL + SF ++ Q VYD +GS R ++
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNA---KDI---QIPVYDTFDGSDLRVLS 472
Score = 30.0 bits (67), Expect = 0.85
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 48/137 (35%)
Query: 73 QG-EVVG-NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAG 130
QG + G ++ + AAQ V +R D H + YG F +
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDV-------WNR--ADN--------HFKDTYG---FSILD 1663
Query: 131 RKRKKSTTSNYLISTDPTDLS-----RKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIF 185
++ +P +L+ KG+ ++R N F +G + IF
Sbjct: 1664 -----------IVINNPVNLTIHFGGEKGK----RIRENYSAMIFETIVDGKLKTE-KIF 1707
Query: 186 DRDEQVKVRQELAAIIY 202
+ + + +
Sbjct: 1708 KE-----INEHSTSYTF 1719
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,797,850
Number of extensions: 221371
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 11
Length of query: 248
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 157
Effective length of database: 4,160,982
Effective search space: 653274174
Effective search space used: 653274174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)