RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17671
         (248 letters)



>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score =  146 bits (370), Expect = 7e-44
 Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%)

Query: 77  VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKIFLLAGRKRKKS 136
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK+FLLAGRKRKKS
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKS 66

Query: 137 TTSNYLISTDPTDLSRKGESFVGKLRSNLLGTQFTVYDNGSSRRRVNIFDRDEQVKVRQE 196
            TSNYLIS DPTDLSR G+S++GKLRSNL+GT+FTVYDNG + ++ +     E   +RQE
Sbjct: 67  KTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSS-TLESGTLRQE 125

Query: 197 LAAIIY 202
           LAA+ Y
Sbjct: 126 LAAVCY 131


>d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human
          cytomegalovirus [TaxId: 10359]}
          Length = 95

 Score = 26.5 bits (58), Expect = 1.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 17 QGEVVGNLERFVLEPAA 33
          +G +VGN+ RFV +P A
Sbjct: 20 RGSIVGNMSRFVFDPKA 36



 Score = 26.5 bits (58), Expect = 1.2
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 73 QGEVVGNLERFVLEPAA 89
          +G +VGN+ RFV +P A
Sbjct: 20 RGSIVGNMSRFVFDPKA 36


>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 124

 Score = 25.3 bits (55), Expect = 4.1
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 191 VKVRQELAAIIY-VSIKSNREFICVFVDITALLSDFFAINFHLSRIFLHW 239
             + Q    +   V      +      D    +  +F ++  L++++ HW
Sbjct: 53  WTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHW 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 930,498
Number of extensions: 41748
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 6
Length of query: 248
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 165
Effective length of database: 1,268,006
Effective search space: 209220990
Effective search space used: 209220990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)