Query psy17672
Match_columns 319
No_of_seqs 311 out of 924
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:01:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 100.0 3.9E-38 1.3E-42 268.5 14.4 137 168-304 12-148 (148)
2 2i1a_A DNA damage-inducible pr 100.0 1.6E-37 5.4E-42 263.6 13.9 148 155-305 1-148 (148)
3 2daf_A FLJ35834 protein; hypot 99.4 2.3E-13 8E-18 110.2 5.5 57 1-58 37-93 (118)
4 3plu_A Ubiquitin-like modifier 99.4 4.8E-13 1.6E-17 104.4 6.3 50 1-51 42-91 (93)
5 3m62_B UV excision repair prot 99.4 4.5E-13 1.5E-17 107.3 6.3 54 1-55 22-75 (106)
6 1wju_A NEDD8 ultimate buster-1 99.4 5.4E-13 1.8E-17 105.8 6.5 51 1-52 40-90 (100)
7 1v5o_A 1700011N24RIK protein; 99.4 8.3E-13 2.9E-17 104.8 7.1 54 1-54 32-85 (102)
8 1oqy_A HHR23A, UV excision rep 99.4 1.3E-12 4.6E-17 125.8 8.9 51 1-52 28-82 (368)
9 3phx_B Ubiquitin-like protein 99.3 1.7E-12 5.8E-17 97.6 6.7 52 1-53 25-76 (79)
10 2bwf_A Ubiquitin-like protein 99.3 3.4E-12 1.2E-16 95.1 7.0 52 1-53 24-75 (77)
11 3slz_A GAG-Pro-POL polyprotein 99.3 9E-12 3.1E-16 103.4 9.4 104 178-290 20-124 (132)
12 2kk8_A Uncharacterized protein 99.3 2.5E-12 8.4E-17 98.7 5.5 52 1-53 31-83 (84)
13 2faz_A Ubiquitin-like containi 99.3 4.6E-12 1.6E-16 94.9 6.8 52 1-53 25-76 (78)
14 4dwf_A HLA-B-associated transc 99.3 4.4E-12 1.5E-16 97.8 6.9 52 1-54 26-77 (90)
15 1uh6_A Ubiquitin-like 5; beta- 99.3 2.6E-12 9E-17 101.8 5.5 51 1-52 49-99 (100)
16 1wxv_A BAG-family molecular ch 99.3 5E-12 1.7E-16 98.1 6.7 54 1-54 32-85 (92)
17 1fmb_A EIAV protease; hydrolas 99.3 1.5E-11 5.2E-16 98.1 9.3 97 179-281 7-104 (104)
18 1uel_A HHR23B, UV excision rep 99.3 1.1E-11 3.6E-16 97.1 8.3 53 1-54 21-76 (95)
19 1wx7_A Ubiquilin 3; ubiquitin- 99.3 9.6E-12 3.3E-16 99.2 8.1 53 1-54 37-89 (106)
20 4fbj_B NEDD8; effector-HOST ta 99.3 5.3E-12 1.8E-16 97.4 6.4 52 1-53 21-72 (88)
21 3v6c_B Ubiquitin; structural g 99.3 6E-12 2.1E-16 97.5 6.6 52 1-53 38-89 (91)
22 4b6w_A Tubulin-specific chaper 99.3 4E-12 1.4E-16 98.1 5.5 52 1-53 25-83 (86)
23 4a20_A Ubiquitin-like protein 99.3 5.7E-12 1.9E-16 99.6 6.4 52 1-53 42-95 (98)
24 4ajy_B Transcription elongatio 99.3 5.1E-12 1.8E-16 102.7 5.9 53 1-54 22-81 (118)
25 2wyq_A HHR23A, UV excision rep 99.3 8.2E-12 2.8E-16 95.0 6.8 52 1-53 26-80 (85)
26 4eew_A Large proline-rich prot 99.3 7.6E-12 2.6E-16 96.0 6.4 50 1-52 38-87 (88)
27 2kan_A Uncharacterized protein 99.3 8.8E-12 3E-16 97.6 6.8 53 1-53 35-87 (94)
28 1wgg_A Ubiquitin carboxyl-term 99.2 8.9E-12 3.1E-16 98.0 6.6 53 1-55 28-80 (96)
29 2lxa_A Ubiquitin-like protein 99.2 6E-12 2.1E-16 97.4 5.5 52 1-53 24-77 (87)
30 2uyz_B Small ubiquitin-related 99.2 5.9E-12 2E-16 94.6 5.3 52 1-53 24-75 (79)
31 2kd0_A LRR repeats and ubiquit 99.2 1.1E-11 3.6E-16 95.3 6.8 52 1-53 32-83 (85)
32 3dbh_I NEDD8; cell cycle, acti 99.2 8E-12 2.7E-16 95.5 5.9 52 1-53 33-84 (88)
33 1ndd_A NEDD8, protein (ubiquit 99.2 1.3E-11 4.5E-16 91.3 6.8 52 1-53 21-72 (76)
34 3n3k_B Ubiquitin; hydrolase, p 99.2 1.2E-11 3.9E-16 93.9 6.5 52 1-53 24-75 (85)
35 3m63_B Ubiquitin domain-contai 99.2 8.3E-12 2.9E-16 99.0 5.8 52 1-53 48-99 (101)
36 2fnj_B Transcription elongatio 99.2 7.2E-12 2.5E-16 102.1 5.4 52 1-53 22-80 (118)
37 2dzi_A Ubiquitin-like protein 99.2 1.1E-11 3.7E-16 93.2 5.9 52 1-53 28-79 (81)
38 3a9j_A Ubiquitin; protein comp 99.2 2E-11 6.8E-16 90.3 6.7 52 1-53 21-72 (76)
39 4hcn_B Polyubiquitin, ubiquiti 99.2 1.6E-11 5.3E-16 96.6 6.3 52 1-53 43-94 (98)
40 1wgd_A Homocysteine-responsive 99.2 1.5E-11 5E-16 95.7 6.0 52 1-53 30-85 (93)
41 3mtn_B UBA80, ubcep1, ubiquiti 99.2 2.1E-11 7E-16 92.4 6.6 52 1-53 24-75 (85)
42 2hj8_A Interferon-induced 17 k 99.2 1.1E-11 3.6E-16 95.6 5.0 52 1-53 25-76 (88)
43 1wh3_A 59 kDa 2'-5'-oligoadeny 99.2 1.7E-11 5.9E-16 93.7 6.2 52 1-53 28-79 (87)
44 1sif_A Ubiquitin; hydrophobic 99.2 2E-11 6.9E-16 94.1 6.4 52 1-53 30-81 (88)
45 3k9o_B Ubiquitin, UBB+1; E2-25 99.2 2.2E-11 7.7E-16 94.8 6.7 52 1-53 22-73 (96)
46 4dbg_A Ranbp-type and C3HC4-ty 99.2 2.4E-11 8.4E-16 97.0 7.0 54 1-55 47-101 (105)
47 1wyw_B Ubiquitin-like protein 99.2 1.5E-11 5E-16 96.7 5.6 52 1-53 42-93 (97)
48 1wy8_A NP95-like ring finger p 99.2 2.2E-11 7.5E-16 93.6 6.4 52 1-53 30-81 (89)
49 1yqb_A Ubiquilin 3; structural 99.2 2.3E-11 7.9E-16 96.2 6.6 52 1-53 42-93 (100)
50 2klc_A Ubiquilin-1; ubiquitin- 99.2 2.7E-11 9.2E-16 96.0 7.0 52 1-53 45-96 (101)
51 1v2y_A 3300001G02RIK protein; 99.2 6E-12 2E-16 100.7 3.1 53 1-53 28-95 (105)
52 2kj6_A Tubulin folding cofacto 99.2 1.8E-11 6.1E-16 96.6 5.7 53 1-53 37-95 (97)
53 1x1m_A Ubiquitin-like protein 99.2 3.2E-11 1.1E-15 96.5 7.1 53 1-54 45-100 (107)
54 1ttn_A DC-UBP, dendritic cell- 99.2 2.2E-11 7.6E-16 97.2 6.1 53 1-54 44-96 (106)
55 2l7r_A Ubiquitin-like protein 99.2 2.1E-11 7E-16 95.1 5.7 52 1-53 38-89 (93)
56 1wx8_A Riken cDNA 4931431F19; 99.2 1.8E-11 6.1E-16 95.7 5.1 52 1-53 37-88 (96)
57 1v5t_A 8430435I17RIK protein; 99.2 3.7E-11 1.3E-15 93.1 6.2 53 1-54 28-83 (90)
58 2kjr_A CG11242; UBL, ubiquitin 99.2 4E-11 1.4E-15 94.2 6.1 52 1-52 38-94 (95)
59 1j8c_A Ubiquitin-like protein 99.1 6.4E-11 2.2E-15 97.5 6.8 52 1-53 52-103 (125)
60 1we6_A Splicing factor, putati 99.1 5.5E-11 1.9E-15 95.6 6.2 52 1-53 52-103 (111)
61 1yx5_B Ubiquitin; proteasome, 99.1 7.6E-11 2.6E-15 92.4 6.8 52 1-53 21-72 (98)
62 2kdb_A Homocysteine-responsive 99.1 3.3E-11 1.1E-15 95.4 4.6 50 1-51 46-99 (99)
63 3vdz_A Ubiquitin-40S ribosomal 99.1 7.6E-11 2.6E-15 94.9 6.5 52 1-53 56-107 (111)
64 2kdi_A Ubiquitin, vacuolar pro 99.1 8.2E-11 2.8E-15 95.3 6.4 52 1-53 30-81 (114)
65 3b1l_X E3 ubiquitin-protein li 98.7 6.8E-12 2.3E-16 93.4 0.0 52 1-53 21-72 (76)
66 1wia_A Hypothetical ubiquitin- 99.1 1.1E-10 3.9E-15 90.9 7.0 52 1-55 28-79 (95)
67 1we7_A SF3A1 protein; structur 99.1 9.3E-11 3.2E-15 94.9 5.8 52 1-53 56-107 (115)
68 1v86_A DNA segment, CHR 7, way 99.1 5.2E-11 1.8E-15 93.3 4.0 51 1-53 37-87 (95)
69 2ojr_A Ubiquitin; lanthide-bin 99.1 1.7E-10 5.8E-15 92.8 6.9 52 1-53 56-107 (111)
70 3ec0_A Protease; HIV-2, inhibi 99.1 1E-09 3.5E-14 86.5 10.9 91 180-281 8-99 (99)
71 1wgh_A Ubiquitin-like 3, HCG-1 99.1 2.9E-10 1E-14 92.4 7.7 55 1-56 37-101 (116)
72 3rt3_B Ubiquitin-like protein 99.1 1.9E-10 6.6E-15 97.6 6.7 52 1-53 102-153 (159)
73 2gow_A HCG-1 protein, ubiquiti 99.0 2.1E-10 7.3E-15 94.4 6.3 54 1-55 38-101 (125)
74 3l0w_B Monoubiquitinated proli 99.0 2.7E-10 9.3E-15 98.4 7.2 52 1-53 21-72 (169)
75 1v6e_A Cytoskeleton-associated 99.0 1.7E-10 5.7E-15 90.3 5.3 52 1-53 29-87 (95)
76 1se9_A Ubiquitin family; ubiqu 99.0 2.7E-10 9.1E-15 93.8 6.3 52 1-53 38-102 (126)
77 2hs1_A HIV-1 protease; ultra-h 99.0 3.8E-09 1.3E-13 83.3 12.1 91 180-281 8-99 (99)
78 3q3f_A Ribonuclease/ubiquitin 99.0 4.8E-10 1.6E-14 98.6 5.9 52 1-53 126-177 (189)
79 3u5e_m 60S ribosomal protein L 99.0 5.8E-11 2E-15 98.0 0.0 52 1-53 21-72 (128)
80 3rt3_B Ubiquitin-like protein 99.0 7.4E-10 2.5E-14 93.9 6.6 52 1-53 23-76 (159)
81 1t0y_A Tubulin folding cofacto 98.9 8.9E-10 3.1E-14 90.2 6.2 53 1-53 28-86 (122)
82 3b08_A Polyubiquitin-C, ubiqui 98.9 1E-09 3.5E-14 91.7 6.7 52 1-53 97-148 (152)
83 3u30_A Ubiquitin, linear DI-ub 98.9 1E-09 3.5E-14 94.5 6.7 52 1-53 41-92 (172)
84 2dzj_A Synaptic glycoprotein S 98.9 6.5E-10 2.2E-14 86.0 4.2 50 1-51 34-86 (88)
85 3b08_A Polyubiquitin-C, ubiqui 98.9 1.5E-09 5.1E-14 90.7 6.7 52 1-53 21-72 (152)
86 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.9 1E-08 3.4E-13 90.7 11.9 92 180-282 8-100 (203)
87 1wf9_A NPL4 family protein; be 98.9 9.8E-10 3.4E-14 87.9 4.9 55 1-55 28-96 (107)
88 3u5c_f 40S ribosomal protein S 98.9 1.4E-10 5E-15 98.6 0.0 51 1-52 21-71 (152)
89 2dzm_A FAS-associated factor 1 98.9 1.4E-09 4.7E-14 86.2 4.1 51 1-53 29-81 (100)
90 2kzr_A Ubiquitin thioesterase 98.8 4.2E-09 1.4E-13 80.7 5.8 54 1-54 21-78 (86)
91 1wjn_A Tubulin-folding protein 98.8 7.1E-09 2.4E-13 81.2 6.9 53 1-53 33-92 (97)
92 2hah_A Protease, retropepsin; 98.7 6E-08 2.1E-12 78.6 9.1 94 180-280 14-115 (116)
93 3shq_A UBLCP1; phosphatase, hy 98.7 1.3E-08 4.4E-13 96.4 5.1 53 1-54 25-80 (320)
94 2io1_B Small ubiquitin-related 98.5 8.9E-08 3.1E-12 74.8 5.9 51 2-53 29-79 (94)
95 1wm3_A Ubiquitin-like protein 98.5 1.4E-07 4.7E-12 69.9 5.9 49 2-51 23-71 (72)
96 3a4r_A Nfatc2-interacting prot 98.5 2.3E-07 7.9E-12 70.0 5.9 49 2-51 30-78 (79)
97 2xzm_9 RPS31E; ribosome, trans 98.5 2E-08 7E-13 88.0 0.0 46 1-52 21-66 (189)
98 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.5 1.7E-06 5.9E-11 76.4 12.2 91 180-281 112-203 (203)
99 2io0_B Small ubiquitin-related 98.4 3.7E-07 1.3E-11 70.9 6.1 51 2-53 27-77 (91)
100 2d07_B Ubiquitin-like protein 98.4 5.1E-07 1.7E-11 70.3 6.0 51 2-53 39-89 (93)
101 1wz0_A Ubiquitin-like protein 98.3 6.8E-07 2.3E-11 71.1 4.9 51 2-53 46-96 (104)
102 2eke_C Ubiquitin-like protein 98.2 1.4E-06 4.9E-11 69.4 5.7 51 2-53 52-102 (106)
103 2k8h_A Small ubiquitin protein 98.2 9.1E-07 3.1E-11 71.1 3.9 51 2-53 48-98 (110)
104 3sqf_A Protease; folded monome 98.1 1.4E-06 4.9E-11 70.1 4.2 98 180-284 9-110 (114)
105 2rsp_A RSV protease; hydrolase 98.1 1.9E-06 6.4E-11 70.5 4.5 89 187-280 27-122 (124)
106 3kyd_D Small ubiquitin-related 97.8 4.6E-05 1.6E-09 61.5 6.6 51 2-53 62-112 (115)
107 3pge_A SUMO-modified prolifera 97.6 6.7E-05 2.3E-09 66.2 5.6 51 2-53 50-100 (200)
108 1pve_A HHR23B, UV excision rep 97.5 5.3E-05 1.8E-09 56.0 3.3 47 76-122 8-60 (72)
109 2f4m_B UV excision repair prot 97.5 0.0001 3.5E-09 52.7 4.3 46 76-121 6-57 (61)
110 3tix_A Ubiquitin-like protein 97.4 0.00013 4.3E-09 63.9 4.9 51 2-53 78-128 (207)
111 3liy_A Protease; hydrolase, hy 97.4 0.0002 7E-09 57.3 5.7 96 180-280 10-114 (116)
112 2pjh_A Protein NPL4, nuclear p 97.4 0.00011 3.6E-09 55.5 3.2 51 1-51 24-78 (80)
113 4efo_A Serine/threonine-protei 97.2 0.00025 8.7E-09 55.1 3.9 31 1-31 34-64 (94)
114 2qsf_X RAD23, UV excision repa 97.2 0.00026 8.9E-09 60.8 4.1 48 75-122 26-80 (171)
115 3goe_A DNA repair protein RAD6 97.2 0.0011 3.7E-08 49.6 6.7 50 2-52 31-81 (82)
116 2pma_A Uncharacterized protein 97.1 0.00081 2.8E-08 56.4 5.8 96 189-284 17-140 (146)
117 3v7o_A Minor nucleoprotein VP3 96.8 0.00018 6E-09 63.7 0.0 51 2-53 42-92 (227)
118 2jxx_A Nfatc2-interacting prot 96.6 0.0032 1.1E-07 49.2 5.8 49 2-51 48-96 (97)
119 3qvc_A Histo-aspartic protease 96.4 0.034 1.1E-06 54.5 12.6 93 177-271 135-251 (451)
120 3uf8_A Ubiquitin-like protein 95.9 0.01 3.5E-07 52.4 5.9 51 2-53 42-92 (209)
121 1miq_A Plasmepsin; aspartic pr 95.8 0.029 1E-06 53.4 8.9 92 178-271 61-176 (375)
122 3psg_A Pepsinogen; hydrolase(a 95.6 0.054 1.9E-06 51.4 9.9 93 177-271 54-169 (370)
123 2bps_A YUKD protein; ubiquitin 95.5 0.013 4.4E-07 44.1 4.3 49 1-50 27-80 (81)
124 3ix6_A TS, tsase, thymidylate 95.5 0.0022 7.5E-08 61.2 0.0 51 2-53 42-92 (360)
125 2x0b_A Renin; hydrolase-hormon 95.5 0.056 1.9E-06 51.7 9.7 93 177-271 59-175 (383)
126 1bxo_A Protein (penicillopepsi 95.4 0.042 1.4E-06 50.9 8.3 94 177-271 13-126 (323)
127 2bju_A Plasmepsin II; aspartic 95.3 0.049 1.7E-06 53.5 8.8 93 177-271 136-252 (453)
128 3cms_A Chymosin B; hydrolase, 95.1 0.091 3.1E-06 48.6 9.6 92 178-271 13-127 (323)
129 3k1w_A Renin; protease, altern 95.1 0.17 5.8E-06 46.8 11.5 92 178-271 17-132 (341)
130 2l76_A Nfatc2-interacting prot 95.1 0.03 1E-06 43.4 5.1 48 4-52 44-91 (95)
131 1wkr_A Polyporopepsin; hydrola 95.1 0.066 2.2E-06 49.8 8.6 87 179-271 12-109 (340)
132 1yg9_A Aspartic protease BLA G 95.1 0.051 1.8E-06 50.5 7.9 92 178-271 16-128 (330)
133 4da1_A Protein phosphatase 1K, 95.1 0.0038 1.3E-07 59.9 0.0 51 2-53 51-101 (389)
134 1izd_A Aspartic proteinase; su 95.0 0.064 2.2E-06 49.7 8.3 94 177-271 13-126 (323)
135 1ibq_A Aspergillopepsin; aspar 95.0 0.069 2.4E-06 49.5 8.4 93 177-271 12-125 (325)
136 1mpp_A Pepsin; hydrolase(acid 95.0 0.098 3.4E-06 49.1 9.5 92 178-271 17-137 (361)
137 1b5f_A Protein (cardosin A); h 94.9 0.091 3.1E-06 46.6 8.6 92 178-271 12-127 (239)
138 1dpj_A Proteinase A; proteinas 94.5 0.11 3.9E-06 48.0 8.4 92 178-271 12-126 (329)
139 1tzs_A Cathepsin E; hydrolase, 94.5 0.14 4.9E-06 47.9 9.2 92 177-271 21-136 (351)
140 4aa9_A Chymosin; hydrolase, as 94.4 0.22 7.7E-06 45.6 10.3 92 178-271 10-124 (320)
141 1oew_A Endothiapepsin; hydrola 94.4 0.15 5.2E-06 47.2 9.2 94 177-271 13-129 (329)
142 2jys_A Protease/reverse transc 94.4 0.24 8.1E-06 38.1 8.4 82 183-276 10-97 (107)
143 3c9x_A Trichoderma reesei aspa 94.3 0.14 4.8E-06 47.4 8.7 94 177-271 13-130 (329)
144 1htr_B Gastricsin; aspartyl pr 94.0 0.19 6.7E-06 46.4 9.0 93 177-271 10-125 (329)
145 2kc2_A Talin-1, F1; FERM, adhe 93.9 0.05 1.7E-06 44.4 4.0 52 1-53 32-122 (128)
146 3fv3_A SAPP1P-secreted asparti 93.5 0.21 7.2E-06 46.2 8.3 92 179-271 12-122 (339)
147 1am5_A Pepsin, acid proteinase 93.4 0.18 6.3E-06 46.4 7.7 92 178-271 11-125 (324)
148 3pvk_A Candidapepsin-2; hydrol 93.3 0.56 1.9E-05 43.3 10.9 92 179-271 12-128 (342)
149 1qdm_A Prophytepsin; aspartic 93.3 0.28 9.4E-06 48.3 9.1 92 177-271 50-166 (478)
150 2apr_A Rhizopuspepsin; hydrola 93.2 0.31 1E-05 45.0 8.8 94 177-271 13-127 (325)
151 2qzx_A Candidapepsin-5; aspart 93.0 0.57 2E-05 43.4 10.4 93 178-271 11-128 (342)
152 3aup_A SBG7S, BG, basic 7S glo 93.0 0.47 1.6E-05 45.2 10.0 93 178-271 20-163 (403)
153 3qx1_A FAS-associated factor 1 92.9 0.15 5.2E-06 38.0 5.2 50 2-52 29-82 (84)
154 1j71_A Candidapepsin, aspartic 92.7 0.32 1.1E-05 45.1 8.2 93 178-271 11-128 (334)
155 2ewy_A Beta-secretase 2; BACE2 92.2 0.54 1.8E-05 44.2 9.2 91 178-271 12-124 (383)
156 3lpj_A Beta-secretase 1; alzhe 92.2 0.35 1.2E-05 46.9 8.1 88 179-271 74-185 (455)
157 3cms_A Chymosin B; hydrolase, 91.8 0.34 1.2E-05 44.6 7.1 103 184-290 197-321 (323)
158 1yg9_A Aspartic protease BLA G 91.7 0.28 9.5E-06 45.5 6.4 102 185-290 202-327 (330)
159 3vf3_A Beta-secretase 1; struc 91.5 0.43 1.5E-05 45.3 7.6 92 178-271 27-139 (402)
160 1lya_A Cathepsin D; lysosomal 91.1 0.56 1.9E-05 35.9 6.6 30 177-206 11-42 (97)
161 1lya_B Cathepsin D; lysosomal 90.8 0.46 1.6E-05 41.7 6.7 103 184-290 107-239 (241)
162 3qvc_A Histo-aspartic protease 90.6 0.9 3.1E-05 44.3 9.2 106 182-290 319-447 (451)
163 1wkr_A Polyporopepsin; hydrola 90.5 0.38 1.3E-05 44.6 6.1 105 183-290 193-331 (340)
164 1am5_A Pepsin, acid proteinase 90.3 0.31 1.1E-05 44.9 5.3 102 184-290 196-322 (324)
165 2qp8_A Beta-secretase 1; BACE1 90.2 0.79 2.7E-05 43.3 8.2 91 179-271 21-132 (395)
166 4a3p_A Ubiquitin carboxyl-term 90.0 0.52 1.8E-05 41.5 6.2 54 1-54 150-209 (217)
167 2dzk_A UBX domain-containing p 89.8 0.53 1.8E-05 37.0 5.5 52 2-53 35-90 (109)
168 1miq_A Plasmepsin; aspartic pr 89.8 0.67 2.3E-05 43.8 7.3 104 184-290 246-372 (375)
169 1j71_A Candidapepsin, aspartic 89.7 1.2 4.1E-05 41.0 8.9 100 184-290 201-322 (334)
170 3fv3_A SAPP1P-secreted asparti 89.5 0.46 1.6E-05 43.8 5.8 104 185-290 204-327 (339)
171 1dpj_A Proteinase A; proteinas 89.5 0.91 3.1E-05 41.8 7.8 101 184-290 200-327 (329)
172 1mpp_A Pepsin; hydrolase(acid 89.4 0.56 1.9E-05 43.8 6.4 103 185-290 218-353 (361)
173 3jyu_A Ubiquitin carboxyl-term 89.4 0.78 2.7E-05 40.7 7.0 54 1-54 162-221 (231)
174 1ibq_A Aspergillopepsin; aspar 89.3 0.84 2.9E-05 42.0 7.4 104 185-290 197-323 (325)
175 4aa9_A Chymosin; hydrolase, as 89.0 0.78 2.7E-05 41.9 7.0 102 185-290 195-318 (320)
176 1bxo_A Protein (penicillopepsi 89.0 0.86 2.9E-05 41.9 7.2 104 185-290 198-321 (323)
177 2qzx_A Candidapepsin-5; aspart 88.8 0.71 2.4E-05 42.7 6.5 103 184-290 201-329 (342)
178 1htr_B Gastricsin; aspartyl pr 88.6 0.56 1.9E-05 43.2 5.6 103 184-290 197-327 (329)
179 2apr_A Rhizopuspepsin; hydrola 88.4 0.53 1.8E-05 43.4 5.4 98 185-290 202-322 (325)
180 3k1w_A Renin; protease, altern 88.1 1.7 5.7E-05 40.0 8.6 101 185-290 208-338 (341)
181 2bju_A Plasmepsin II; aspartic 88.1 1.3 4.3E-05 43.3 8.1 102 185-290 323-448 (453)
182 1izd_A Aspartic proteinase; su 87.8 0.76 2.6E-05 42.3 6.0 104 185-290 198-321 (323)
183 3pvk_A Candidapepsin-2; hydrol 87.8 0.52 1.8E-05 43.5 4.8 100 184-290 200-329 (342)
184 2al3_A TUG long isoform; TUG U 87.7 1.3 4.6E-05 33.7 6.2 53 2-55 31-83 (90)
185 1oew_A Endothiapepsin; hydrola 87.2 1.4 4.9E-05 40.5 7.6 104 185-290 201-328 (329)
186 3c9x_A Trichoderma reesei aspa 86.5 1.2 4.2E-05 41.0 6.7 104 185-290 202-328 (329)
187 1tzs_A Cathepsin E; hydrolase, 86.1 1.5 5.2E-05 40.7 7.1 102 184-290 209-340 (351)
188 1t6e_X Xylanase inhibitor; two 85.9 1.4 4.8E-05 41.5 6.8 27 264-290 345-371 (381)
189 3aup_A SBG7S, BG, basic 7S glo 85.7 2.3 7.9E-05 40.3 8.3 37 264-304 358-395 (403)
190 2x0b_A Renin; hydrolase-hormon 85.4 1.3 4.6E-05 42.0 6.5 102 184-290 250-381 (383)
191 3vf3_A Beta-secretase 1; struc 85.1 0.95 3.2E-05 42.9 5.2 28 263-290 345-372 (402)
192 1wj4_A KIAA0794 protein; UBX d 84.2 1 3.5E-05 36.2 4.3 51 2-53 65-119 (124)
193 3onh_A Ubiquitin-activating en 83.5 2.6 8.8E-05 34.1 6.3 50 1-51 20-77 (127)
194 3psg_A Pepsinogen; hydrolase(a 82.7 1.7 5.8E-05 40.9 5.9 102 185-290 241-368 (370)
195 2cr5_A Reproduction 8; UBX dom 82.3 3.3 0.00011 32.2 6.5 51 2-53 45-98 (109)
196 2ewy_A Beta-secretase 2; BACE2 81.4 1.5 5.1E-05 41.1 4.9 28 263-290 326-353 (383)
197 3lpj_A Beta-secretase 1; alzhe 80.4 1.3 4.5E-05 42.8 4.2 28 263-290 391-418 (455)
198 2juo_A GA-binding protein alph 80.0 3.4 0.00012 31.0 5.3 50 2-52 14-63 (89)
199 4e71_A Plexin-B2, MM1; transme 78.4 4.4 0.00015 32.0 5.9 52 1-52 34-109 (111)
200 2llw_A Heat shock protein STI1 77.5 6 0.00021 28.6 6.0 29 79-109 7-35 (71)
201 1s3s_G P47 protein; AAA ATPase 76.0 2.5 8.6E-05 34.0 4.0 48 1-48 73-123 (127)
202 2qp8_A Beta-secretase 1; BACE1 75.1 2.2 7.7E-05 40.2 4.1 28 263-290 338-365 (395)
203 2r2o_A Plexin-B1; effector dom 74.3 6.4 0.00022 32.2 6.0 53 1-53 51-128 (138)
204 3vla_A EDGP; extracellular, in 72.8 4.5 0.00015 38.7 5.6 27 264-290 371-397 (413)
205 2kvr_A Ubiquitin carboxyl-term 72.7 2.5 8.5E-05 34.2 3.2 26 1-26 66-91 (130)
206 3vla_A EDGP; extracellular, in 72.0 20 0.0007 34.0 10.1 29 178-206 19-49 (413)
207 2lnm_A Protein TIC 40, chlorop 69.8 3.9 0.00013 28.6 3.3 8 89-96 18-25 (62)
208 1qdm_A Prophytepsin; aspartic 69.0 12 0.00041 36.4 7.8 28 263-290 449-476 (478)
209 2llw_A Heat shock protein STI1 64.9 7.5 0.00026 28.1 4.1 21 88-109 38-58 (71)
210 1tyg_B YJBS; alpha beta barrel 62.9 13 0.00046 27.7 5.3 45 2-52 38-82 (87)
211 3ivf_A Talin-1; FERM domain, c 62.7 12 0.00042 34.8 6.3 51 1-52 23-83 (371)
212 2l9b_A MRNA 3'-END-processing 62.5 6.4 0.00022 30.9 3.5 27 83-109 60-86 (109)
213 2cu3_A Unknown function protei 62.3 16 0.00054 25.2 5.3 46 1-52 14-59 (64)
214 3h6n_A Plexin-D1; structural g 62.1 20 0.00067 28.9 6.4 53 1-53 27-104 (127)
215 2kl0_A Putative thiamin biosyn 60.5 13 0.00044 26.7 4.7 45 2-52 16-60 (73)
216 1b5f_A Protein (cardosin A); h 59.9 6.1 0.00021 34.5 3.4 29 185-213 197-232 (239)
217 3brv_B NF-kappa-B essential mo 59.0 13 0.00045 26.7 4.3 28 80-107 6-33 (70)
218 3qa8_A MGC80376 protein; kinas 56.0 12 0.0004 38.4 5.2 53 1-53 332-393 (676)
219 1t6e_X Xylanase inhibitor; two 55.8 22 0.00075 33.1 6.7 26 178-206 13-38 (381)
220 1f0z_A THis protein; ubiquitin 54.8 17 0.00057 25.2 4.4 45 2-52 17-61 (66)
221 1ryj_A Unknown; beta/alpha pro 54.1 28 0.00096 24.4 5.6 41 2-52 25-65 (70)
222 4eut_A Serine/threonine-protei 52.3 15 0.0005 34.1 4.9 43 1-43 332-375 (396)
223 3ggo_A Prephenate dehydrogenas 49.0 24 0.00083 32.1 5.7 45 78-122 256-305 (314)
224 3rpf_C Molybdopterin convertin 47.8 42 0.0014 23.6 5.7 47 1-52 21-69 (74)
225 2llv_A Heat shock protein STI1 45.1 6.9 0.00024 28.1 1.0 29 91-122 12-40 (71)
226 3ktd_A Prephenate dehydrogenas 44.0 17 0.00059 33.8 3.8 8 99-106 234-241 (341)
227 2k5p_A THis protein, thiamine- 41.2 15 0.00052 26.7 2.4 38 13-52 26-64 (78)
228 2daj_A KIAA0977 protein, COBL- 39.5 19 0.00065 27.1 2.7 46 2-51 32-80 (91)
229 2ylm_A Ubiquitin carboxyl-term 37.7 24 0.00081 35.0 3.9 52 2-53 158-217 (530)
230 2g5c_A Prephenate dehydrogenas 36.7 56 0.0019 28.5 5.9 45 78-122 224-273 (281)
231 2ylm_A Ubiquitin carboxyl-term 36.6 21 0.0007 35.4 3.3 25 1-25 46-70 (530)
232 1fm0_D Molybdopterin convertin 35.9 48 0.0017 23.3 4.5 45 2-52 27-76 (81)
233 2qsf_X RAD23, UV excision repa 34.9 14 0.00046 31.4 1.4 23 88-110 28-53 (171)
234 2w9y_A CE-FAR-7, fatty acid/re 34.0 70 0.0024 26.1 5.5 60 80-159 31-96 (140)
235 1pve_A HHR23B, UV excision rep 33.6 37 0.0012 24.6 3.3 10 100-109 23-32 (72)
236 3kuz_A Plexin-C1; structural g 32.5 25 0.00084 28.3 2.5 52 1-52 49-125 (126)
237 4a6q_A Histone deacetylase com 31.7 36 0.0012 27.9 3.4 29 24-52 109-137 (143)
238 3lay_A Zinc resistance-associa 31.3 2.3E+02 0.0079 23.7 10.5 25 131-155 98-122 (175)
239 1oqy_A HHR23A, UV excision rep 31.2 93 0.0032 29.3 6.7 40 83-122 248-291 (368)
240 4e74_A Plexin-A4; RBD, structu 30.7 23 0.00078 28.1 2.0 53 1-53 37-114 (117)
241 1y8x_B Ubiquitin-activating en 30.6 76 0.0026 24.1 4.9 52 1-52 15-83 (98)
242 2l32_A Small archaeal modifier 30.5 49 0.0017 23.6 3.6 34 12-52 28-61 (74)
243 3hm6_X Plexin-B1; structural g 29.4 88 0.003 31.7 6.4 53 1-53 284-361 (644)
244 3brv_B NF-kappa-B essential mo 29.2 59 0.002 23.3 3.7 31 90-120 5-35 (70)
245 3b1f_A Putative prephenate deh 26.8 1.1E+02 0.0037 26.7 6.1 13 80-92 234-246 (290)
246 2q5w_D Molybdopterin convertin 25.3 84 0.0029 21.8 4.2 44 2-52 27-72 (77)
247 1rws_A Hypothetical protein PF 25.2 38 0.0013 24.2 2.2 40 2-51 32-71 (77)
248 2g1e_A Hypothetical protein TA 25.1 1.6E+02 0.0054 20.9 5.8 50 1-52 25-85 (90)
249 2eel_A Cell death activator CI 22.8 1.1E+02 0.0039 22.9 4.5 47 2-52 29-77 (91)
250 1b5f_B Protein (cardosin A); h 22.8 57 0.002 23.4 2.9 28 263-290 58-85 (87)
251 3bwu_D FIMD, outer membrane us 22.1 1.3E+02 0.0045 23.2 5.1 40 178-217 30-76 (125)
252 3zqe_A Protein PRGI, cell inva 21.8 3.5E+02 0.012 24.7 8.4 35 133-167 32-66 (305)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=268.54 Aligned_cols=137 Identities=74% Similarity=1.190 Sum_probs=120.3
Q ss_pred HhcCCCCccccceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEc
Q psy17672 168 MEYNPETFGSVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIE 247 (319)
Q Consensus 168 ~~~~pe~~~~~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG 247 (319)
--.-||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||....+.++.+++.|+|+.++.|+++.++|+||
T Consensus 12 ~~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig 91 (148)
T 3s8i_A 12 SGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIE 91 (148)
T ss_dssp ----------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEET
T ss_pred CCcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEEC
Confidence 34579999999999999999999999999999999999999999999998888888889999998899999999999999
Q ss_pred CEEEEeeEEEecCCCCceeechhhhhhccEEEEccCCEEEEccCCeeeecccCCCcc
Q psy17672 248 KDFLTTSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGTTGTETKFLPERELP 304 (319)
Q Consensus 248 ~~~~~~~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~vpfl~~~~~~ 304 (319)
+++++++|.|++..++|+|||||||++++|+|||++++|+|+++++++|||+++|||
T Consensus 92 ~~~~~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~~~~pfl~~~~~~ 148 (148)
T 3s8i_A 92 GDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELP 148 (148)
T ss_dssp TEEEEEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTCCEEECCCGGGCC
T ss_pred CEEEEEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCCeEEeecCcccCc
Confidence 999999999999999999999999999999999999999999888999999999997
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=263.57 Aligned_cols=148 Identities=51% Similarity=0.924 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHhHhcCCCCccccceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeE
Q psy17672 155 IRQKNVEANMEAAMEYNPETFGSVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQ 234 (319)
Q Consensus 155 i~~~~~~~~~~~a~~~~pe~~~~~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~ 234 (319)
|||++|+|||++|||+.||.|++..|++|+|+|||++++|||||||++|+||.++|+++|+....+.++.+.+.|+|+..
T Consensus 1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~ 80 (148)
T 2i1a_A 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK 80 (148)
T ss_dssp ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999998777777776788888777
Q ss_pred EEeEEEEEEEEEcCEEEEeeEEEecCCCCceeechhhhhhccEEEEccCCEEEEccCCeeeecccCCCccc
Q psy17672 235 IIGRIHMVQVAIEKDFLTTSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGTTGTETKFLPERELPS 305 (319)
Q Consensus 235 ~~g~v~~~~i~IG~~~~~~~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~vpfl~~~~~~~ 305 (319)
..|.++..+++||+..++++|.|++ .++|+|||+|||+++++.||+++++|+|.+ .++||++++|+|+
T Consensus 81 ~~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~~--~~~~f~~~~~~~~ 148 (148)
T 2i1a_A 81 IIGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIAE--VETSFLSEAEIPK 148 (148)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEETT--EEEECCCTTTCC-
T ss_pred cccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEcc--EEEecCChhhCCC
Confidence 7899999999999999999999999 679999999999999999999999999997 9999999999985
No 3
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=110.23 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccCCCCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPT 58 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~~~p~ 58 (319)
.||.+||+.++.++++|++.|+|+|+||+|+| ++||++|||++|.+|||+.+++.|-
T Consensus 37 ~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD-~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 37 TILKYLKDHFSHLLGIPHSVLQIRYSGKILKN-NETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp SCSHHHHHHHHHHHTCCTTTEEEEETTEEECS-SCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred CcHHHHHHHHHhhhCCChHHEEEEECCeEcCC-cchHHHcCCCCCCEEEEEEecCCCc
Confidence 48999999999999999999999999999998 6899999999999999998866553
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.38 E-value=4.8e-13 Score=104.42 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEE
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
.||.+||++|++..|+|+++|+|+|+|++|+| ..||++|||++|++|+|-
T Consensus 42 DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD-~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 42 DSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKD-HISLEDYEVHDQTNLELY 91 (93)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEEeCCEEccC-cCCHHHcCCCCCCEEEEE
Confidence 58999999999999999999999999999998 789999999999999984
No 5
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.5e-13 Score=107.25 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~~ 55 (319)
.||.+||++|+..+|+|+++|+|+|+|++|+| +.||++|||++|++|+|+.+.+
T Consensus 22 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 22 NTILETKTKLAQSISCEESQIKLIYSGKVLQD-SKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp SBHHHHHHHHHHTTTSCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECCC-
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEECCEECCC-cCCHHHcCCCCCCEEEEEEcCC
Confidence 48999999999999999999999999999998 6899999999999999997644
No 6
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=5.4e-13 Score=105.77 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||++||++|++++|||+++|+|||+||+|+| ++||++|||++|++|+|+.
T Consensus 40 ~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D-~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 40 ITGRELRSKIAETFGLQENYIKIVINKKQLQL-GKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp SBHHHHHHHHHHHTTCCSTTCEEEETTEECCT-TSBHHHHTCCSSEEEEEEC
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEeCCeECCC-CCcHHHcCCCCCCEEEEEE
Confidence 48999999999999999999999999999998 6899999999999997774
No 7
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=8.3e-13 Score=104.84 Aligned_cols=54 Identities=24% Similarity=0.561 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
+||++||++|+.++|||+++|+|+|+|++|+|+.+||++|||++|++|||+.+.
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 589999999999999999999999999999885579999999999999998653
No 8
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.35 E-value=1.3e-12 Score=125.81 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHh---hhCCCCCCeEEEecCeeccCCcccccccCCCCCcEE-EEEc
Q psy17672 1 MDVEQFRLICQD---ECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~---e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l-~l~~ 52 (319)
.||.+||.+|+. ..|||+++|+|||+||+|+| ++||++|||++|++| ||+.
T Consensus 28 ~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D-~~tL~dygI~~gstIv~lv~ 82 (368)
T 1oqy_A 28 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVT 82 (368)
T ss_dssp CBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECS-SSBTTTTCCCTTSCEEEEEE
T ss_pred ChHHHHHHHHHHHhCcCCCChhheEEEECCeecCC-cCCHHHcCCCCCCEEEEEEe
Confidence 489999999999 56799999999999999998 689999999999998 5553
No 9
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.33 E-value=1.7e-12 Score=97.64 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 25 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred ChHHHHHHHHHhhcCCCHHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999864
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.31 E-value=3.4e-12 Score=95.10 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|++.|+|+|+|+.|.| +.||++|||++|++|+|+.+
T Consensus 24 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 24 STVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence 48999999999999999999999999999998 68999999999999999865
No 11
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.29 E-value=9e-12 Score=103.39 Aligned_cols=104 Identities=22% Similarity=0.257 Sum_probs=75.2
Q ss_pred cceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEeeEEE
Q psy17672 178 VVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSI 257 (319)
Q Consensus 178 ~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~V 257 (319)
....++.++|||+++.|||||||+.|+++...+. +. .+ ...+.|+|............++|++......+.|
T Consensus 20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p---~~---~~--p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~lV 91 (132)
T 3slz_A 20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP---LS---DK--SAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLH 91 (132)
T ss_dssp CCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS---EE---EE--EEEEECSSCEEEEEEECCEEEEETTEEEEECCEE
T ss_pred cCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC---CC---CC--ceEEEccCCEEEEEEEeeeEEEECCeeecceEEE
Confidence 4467899999999999999999999999975443 11 11 1256777754333333446899999887777766
Q ss_pred ecCCCCceeechhhhhhccEEEEcc-CCEEEEcc
Q psy17672 258 LEEQPMDMLLGLDMLRRHECCIDLR-KNVLRIGT 290 (319)
Q Consensus 258 l~~~~~d~ILG~D~L~~~~~~ID~~-~~~L~i~~ 290 (319)
+.. ...-|||+|||.+++|+||+. .+.+.+..
T Consensus 92 ~~~-tPvnLLGrd~Ltqlg~tL~fp~~g~~~~~~ 124 (132)
T 3slz_A 92 VPD-CPYPLLGRDLLTKLKAQIHFEGSGAQVVGP 124 (132)
T ss_dssp CTT-SSSCEECHHHHHHHTCEEEEETTEEEEECT
T ss_pred ECC-CCccEECHhhHhhCCcEEECCCCCceeecc
Confidence 543 456889999999999999987 44444343
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=2.5e-12 Score=98.72 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCee-ccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKH-LLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~-L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++ |+| ++||++|||++|++|+|+.+
T Consensus 31 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D-~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 31 DTLLVVKQKIERSQHIPVSKQTLIVDGIVILRE-DLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCCS-SSBHHHHTCCTTSCEEEEEC
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEECCEEecCC-cCCHHHcCCCCCCEEEEEEc
Confidence 48999999999999999999999999999 987 68999999999999999864
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=4.6e-12 Score=94.93 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|||+.+
T Consensus 25 ~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d-~~tL~~~~i~~g~~i~l~~r 76 (78)
T 2faz_A 25 TKVEELRRKIQELFHVEPGLQRLFYRGKQMED-GHTLFDYEVRLNDTIQLLVR 76 (78)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999875
No 14
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.29 E-value=4.4e-12 Score=97.80 Aligned_cols=52 Identities=21% Similarity=0.351 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||++|+.++|+|+++|+|+|+|+.|+| +.||++||| +|++|||+.+.
T Consensus 26 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d-~~tL~~~~i-~g~~i~l~~~~ 77 (90)
T 4dwf_A 26 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV-GGKVIHLVERA 77 (90)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC-TTEEEEEEECC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCeECCC-CCCHHHcCC-CCcEEEEEecC
Confidence 58999999999999999999999999999998 689999999 89999999864
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=2.6e-12 Score=101.78 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||++||++|++..|||+++|+|+|.||+|+| +.||++|||++|++|+|..
T Consensus 49 dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D-~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 49 DTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKD-HVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEETTEECCS-SCBHHHHTCCTTEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEEe
Confidence 48999999999999999999999999999998 6899999999999999863
No 16
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=5e-12 Score=98.13 Aligned_cols=54 Identities=20% Similarity=0.268 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||++|+..+|+|+++|+|+|+|+.|+|++.+|++|||++|++|||+.+.
T Consensus 32 ~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 32 PVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 489999999999999999999999999999985679999999999999999753
No 17
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.27 E-value=1.5e-11 Score=98.12 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=76.9
Q ss_pred ceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccc-cccceeeEeeccceeEEEeEEEEEEEEEcCEEEEeeEEE
Q psy17672 179 VMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRL-IDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSI 257 (319)
Q Consensus 179 ~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~-~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~V 257 (319)
.+.++.++|||+++.||+||||..|+++...+.+++++.. -.. .+..|+|...... ...+++++.++.....+.|
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p---~~i~GiGG~i~v~-~~~i~i~i~g~~~~gtvlv 82 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG---TGIGGVGGNVETF-STPVTIKKKGRHIKTRMLV 82 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC---CCEEETTEEECCE-EEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCc---cEEEeCCCeEEee-EeeeEEEECCeEEEEEEEE
Confidence 3567899999999999999999999999999999998854 111 1457777543333 6778999999877666666
Q ss_pred ecCCCCceeechhhhhhccEEEEc
Q psy17672 258 LEEQPMDMLLGLDMLRRHECCIDL 281 (319)
Q Consensus 258 l~~~~~d~ILG~D~L~~~~~~ID~ 281 (319)
-+ ...-|||.|+|.+.+|.+||
T Consensus 83 ~~--tp~niiGRd~L~qlg~tLnf 104 (104)
T 1fmb_A 83 AD--IPVTILGRDILQDLGAKLVL 104 (104)
T ss_dssp ES--CSSCEECHHHHHHTTCCCCC
T ss_pred CC--CCCCEecHhHHhhcCcEEeC
Confidence 44 45679999999999999875
No 18
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.1e-11 Score=97.06 Aligned_cols=53 Identities=17% Similarity=0.266 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhh---hCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDE---CGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e---~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||++||++|+.. +|+|+++|+|+|+|+.|+| ++||++|||++|++|+|+...
T Consensus 21 ~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 21 ETVKALKEKIESEKGKDAFPVAGQKLIYAGKILND-DTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp SBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCT-TSBGGGGTCCSSSEEEEEESS
T ss_pred CHHHHHHHHHHhhcccCCCChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEeC
Confidence 4899999999999 7999999999999999987 689999999999999998653
No 19
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=9.6e-12 Score=99.23 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||++|+..+|||++.|+|+|+|+.|+| ++||++|||++|++|||+.+.
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~~ 89 (106)
T 1wx7_A 37 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIKR 89 (106)
T ss_dssp CCHHHHHHHHHHHHTCCTTTEEEEETTEECCT-TSCHHHHTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEcC
Confidence 48999999999999999999999999999987 689999999999999999653
No 20
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.27 E-value=5.3e-12 Score=97.39 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 21 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTTTTTCCTTCEEEEECB
T ss_pred CCHHHHHHHHHHHHCcChhHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999998 78999999999999999965
No 21
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.27 E-value=6e-12 Score=97.47 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 38 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBTGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHhhhCCChhhEEEEECCeECCC-cCcHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999864
No 22
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.27 E-value=4e-12 Score=98.12 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEe-------cCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLN-------NGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~-------~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+||++||++|+..+|||+++|+|+| .|+.|+| ++||++|||++|++|||+-.
T Consensus 25 ~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d-~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 25 QTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAN-DKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp SBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCC-CCCHHHCCCCCCCEEEEEeC
Confidence 6999999999999999999999997 4888987 69999999999999999854
No 23
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.26 E-value=5.7e-12 Score=99.64 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=49.0
Q ss_pred CCHHHHHHHH-HhhhCCCCCCeEEEecCeeccCCcccccccCC-CCCcEEEEEcc
Q psy17672 1 MDVEQFRLIC-QDECGIDATDMILLNNGKHLLEDGSCLKQAGV-RDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i-~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI-~~~d~l~l~~~ 53 (319)
.||.+||++| +...|+|+++|+|+|+|++|+| +.||++||| ++|++|+|+.+
T Consensus 42 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 42 DTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp CBHHHHHHHHHHTTSCSCGGGEEEEETTEEECT-TCBGGGSCCBTTBCEEEEEEC
T ss_pred ChHHHHHHHHHHHhcCCChhhEEEEECCEECcC-cCCHHHcCcCCCCCEEEEEEe
Confidence 4899999999 8888999999999999999998 689999999 99999999975
No 24
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.26 E-value=5.1e-12 Score=102.72 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCC-------CcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRD-------GDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~-------~d~l~l~~~~ 54 (319)
.||.+||++|+...|||+++|+|||+||+|+| ++||++|||++ +++|||+.+.
T Consensus 22 dTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD-~kTL~dy~I~~~ta~~q~~atl~Lvlr~ 81 (118)
T 4ajy_B 22 STVFELKRIVEGILKRPPDEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLAFRA 81 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCGGGSBTTBCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHCCCHHHeEEEeCCeECCC-cCCHHHcCCCcCcccCCCCCEEEEEEec
Confidence 48999999999999999999999999999998 79999999999 9999999763
No 25
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.26 E-value=8.2e-12 Score=94.99 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhh---hCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDE---CGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e---~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+.+ .|+|+++|+|+|+|+.|+| ++||++|||++|++|||+.+
T Consensus 26 ~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 26 ETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD-DVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp SBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCT-TSBGGGGCCCTTSEEEEEEC
T ss_pred CCHHHHHHHHHhhccccCCCHHHeEEEECCEECcC-CCCHHHcCCCCCCEEEEEEc
Confidence 4899999999998 8999999999999999987 68999999999999999875
No 26
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.25 E-value=7.6e-12 Score=96.04 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||++||++|++++|+|+++|+|+|+|+.|+| +.||++||| +|++|||+.
T Consensus 38 ~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 38 MNVKEFKEHIAASVSIPSEKQRLIYQGRVLQD-DKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTC-TTEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-CCcHHHcCC-CCcEEEEEE
Confidence 48999999999999999999999999999998 689999999 899999975
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.25 E-value=8.8e-12 Score=97.60 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+||+|+|+++||++|||++|++|+|+.+
T Consensus 35 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r 87 (94)
T 2kan_A 35 ETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLK 87 (94)
T ss_dssp CBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEe
Confidence 58999999999999999999999999999998328999999999999999975
No 28
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=8.9e-12 Score=97.96 Aligned_cols=53 Identities=11% Similarity=0.131 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~~ 55 (319)
.||.+||++|+..+|||+++|+|+|+|++|+| + +|++|||++|++|+|+...+
T Consensus 28 ~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D-~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 28 EPPMVFKAQLFALTGVQPARQKVMVKGGTLKD-D-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp SCHHHHHHHHHHHTCCCTTTSCCEETTEECCS-S-CCCSCCCCSSCEEECCCCCC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCcCCCC-C-CHHHCCCCCCCEEEEEecch
Confidence 48999999999999999999999999999998 5 99999999999999987543
No 29
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=6e-12 Score=97.36 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=48.8
Q ss_pred CCHHHHHHHH-HhhhCCCCCCeEEEecCeeccCCcccccccCC-CCCcEEEEEcc
Q psy17672 1 MDVEQFRLIC-QDECGIDATDMILLNNGKHLLEDGSCLKQAGV-RDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i-~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI-~~~d~l~l~~~ 53 (319)
.||.+||++| ++..|+|+++|+|||+||+|+| +.||++||| ++|++|+|+.+
T Consensus 24 ~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 24 DTILQIKQHLISEEKASHISEIKLLLKGKVLHD-NLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CBHHHHHHHHHHTTSCSSSTTEEEEETTEECCT-TCBHHHHCCCGGGCEEEEEEC
T ss_pred CcHHHHHHHHHHHhcCCChHHEEEEECCEECcC-cCCHHHcCCCCCCCEEEEEcC
Confidence 4899999999 9999999999999999999998 689999999 69999999875
No 30
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.24 E-value=5.9e-12 Score=94.65 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+++.|+|+++|+|+|+|++|+| ++||++|||++||+|+|+.+
T Consensus 24 ~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d-~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 24 THLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTEEEEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcccEEEEECCEEeCC-CCCHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999864
No 31
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.24 E-value=1.1e-11 Score=95.27 Aligned_cols=52 Identities=25% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|+|+.+
T Consensus 32 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 32 CTVKDLKSQLQPITNVLPRGQKLIFKGKVLVE-TSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCEEEETTEECCT-TCBTTTTTCCTTEEEEEECC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCeECCC-cCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999864
No 32
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.24 E-value=8e-12 Score=95.55 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|++.|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 33 ~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 33 DKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TSBGGGGTCCTTCEEEECCC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 78999999999999999864
No 33
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.24 E-value=1.3e-11 Score=91.30 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|+|++.|+|+|+|+.|.| +.||++|||++|++|+|+.+
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 21 DKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred ChHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999864
No 34
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=1.2e-11 Score=93.94 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|++.+++|++.|+|+|+|++|+| +.||++|||++|++|+|+.+
T Consensus 24 ~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r 75 (85)
T 3n3k_B 24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIHNHSALYLLLK 75 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETBEECCT-TCBTTTTTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCCCHHHEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999965
No 35
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.23 E-value=8.3e-12 Score=99.03 Aligned_cols=52 Identities=21% Similarity=0.323 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 48 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 48 STVLQFKEAINKANGIPVANQRLIYSGKILKD-DQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp SBHHHHHHHHHHHHSCCSTTCCEEETTEECCT-TSBTTTTTCCTTEEEEECCC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEECCEECCC-cCcHHHCCCCCCCEEEEEeC
Confidence 48999999999999999999999999999998 68999999999999999865
No 36
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.23 E-value=7.2e-12 Score=102.06 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCC-------CCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVR-------DGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~-------~~d~l~l~~~ 53 (319)
+||++||++|+...|||+++|+|||+||+|+| ++||++|||+ ++++|||+.+
T Consensus 22 dTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD-~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 22 STVFELKRIVEGILKRPPEEQRLYKDDQLLDD-GKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp SBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred ChHHHHHHHHHHHhCCCHHHeEEEECCeECCC-CCCHHHcCcccccccCCCCCEEEEEec
Confidence 58999999999999999999999999999997 7999999999 7999999976
No 37
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=93.24 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|++.|+|+|+|+.|.| +.||++|||++|++|+|+.+
T Consensus 28 ~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 28 ELVSTLKQLVSEKLNVPVRQQRLLFKGKALAD-GKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCEEEETTEECCT-TSBGGGGTCCSSBCCEEECC
T ss_pred CcHHHHHHHHHHHHCcCHHHEEEEECCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999864
No 38
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.21 E-value=2e-11 Score=90.33 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|+|++.|+|+|+|+.|.| +.||++|||++|++|+|+.+
T Consensus 21 ~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 3a9j_A 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQRESTLHLVLR 72 (76)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCeECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999865
No 39
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.6e-11 Score=96.62 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 43 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 43 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TCBSGGGTCCTTEEEEEECB
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999997 68999999999999999864
No 40
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=1.5e-11 Score=95.73 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhhh--CCCCCCeEEEecCeeccCCccccccc--CCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDEC--GIDATDMILLNNGKHLLEDGSCLKQA--GVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~--gip~~~q~Li~~Gk~L~d~~~tL~~~--gI~~~d~l~l~~~ 53 (319)
.||.+||++|++.+ |+|+++|+|+|+||+|+| +.||++| ||++|++|||+.+
T Consensus 30 ~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D-~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 30 WSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLD-HQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp SCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCS-SSCHHHHSCSSSCSEEEEEECC
T ss_pred CcHHHHHHHHHHHhcCCCChHHeEEEECCEECcC-cCCHHHHhcCCCCCCEEEEEeC
Confidence 48999999999998 999999999999999998 6899999 9999999999965
No 41
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=2.1e-11 Score=92.42 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+++|++.|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 24 ~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 24 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBTGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999998 68999999999999999965
No 42
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=95.65 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|||+++|+|+|+|++|+| ++||++|||++|++|+|+.+
T Consensus 25 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~~I~~g~~i~l~~~ 76 (88)
T 2hj8_A 25 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLR 76 (88)
T ss_dssp SBHHHHHHHHHHHTCSCTTTEEEESSSSCCCT-TSBHHHHHCSTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999987 68999999999999999865
No 43
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=1.7e-11 Score=93.65 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 28 ~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d-~~tL~~~~i~~g~~i~l~~~ 79 (87)
T 1wh3_A 28 SFILGLKQQIEDQQGLPKKQQQLEFQGQVLQD-WLGLGIYGIQDSDTLILSKK 79 (87)
T ss_dssp SBHHHHHHHHHHHTCCCTTTEEEEETTEECCS-SSBHHHHTCCTTEEEEEEEC
T ss_pred ChHHHHHHHHHHHhCCChHHEEEEECCEEccC-CCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999997 68999999999999999865
No 44
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.20 E-value=2e-11 Score=94.11 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|++.+|+|++.|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 30 DTIENLKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEETTEECCT-TSBSGGGTCCTTCEEEEEC-
T ss_pred ChHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999997 68999999999999999865
No 45
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.20 E-value=2.2e-11 Score=94.81 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||+.|+..+|+|++.|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 22 ~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d-~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 22 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHhhhCCChhHEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999997 68999999999999999964
No 46
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.20 E-value=2.4e-11 Score=97.00 Aligned_cols=54 Identities=15% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCC-CCCcEEEEEccCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGV-RDGDIILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI-~~~d~l~l~~~~~ 55 (319)
+||.+||++|++++|||+++|+|+|+|+.++| ++||++||| ++|++|||..-++
T Consensus 47 ~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D-~~TL~~ygI~~~G~t~hL~l~~~ 101 (105)
T 4dbg_A 47 MTVASLKDMVFLDYGFPPVLQQWVIGQRLARD-QETLHSHGVRQNGDSAYLYLLSA 101 (105)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEEECT-TCBTGGGTCCSTTCEEEEEECCC
T ss_pred ChHHHHHHHHHHHhCCCHHHEEEeccCeEccC-cCcHHHcCCCCCCCEEEEEEEec
Confidence 69999999999999999999999999998887 799999999 5999999987543
No 47
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.20 E-value=1.5e-11 Score=96.74 Aligned_cols=52 Identities=15% Similarity=0.304 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+.+.|||+++|+|+|+|++|.| +.||++|||++||+|+|+.+
T Consensus 42 ~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d-~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 42 THLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp SCTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCHHHHTCCTTCEEEEEES
T ss_pred CcHHHHHHHHHHHHCCChhhEEEEECCeEcCC-CCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999997 68999999999999999864
No 48
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=2.2e-11 Score=93.57 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|||+.+
T Consensus 30 ~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~~ 81 (89)
T 1wy8_A 30 ATIEELRERVWALFDVRPECQRLFYRGKQLEN-GYTLFDYDVGLNDIIQLLVR 81 (89)
T ss_dssp CBHHHHHHHHHHHSCCCTTTEEEEETTEECCS-SSBHHHHTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCeECCC-CCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999865
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=2.3e-11 Score=96.24 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 42 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 42 CTIQQLKEEISQRFKAHPDQLVLIFAGKILKD-PDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp CBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBHHHHTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHCCCCCCCEEEEEEc
Confidence 48999999999999999999999999999987 68999999999999999975
No 50
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.19 E-value=2.7e-11 Score=96.00 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|++.|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 45 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 45 SSVQQFKEEISKRFKSHTDQLVLIFAGKILKD-QDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CCHHHHHHHHHHHHTCCGGGEEEEETTEEECT-TCCTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChhhEEEEECCEECCC-cCcHHHcCCCCCCEEEEEEc
Confidence 48999999999999999999999999999987 68999999999999999875
No 51
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.19 E-value=6e-12 Score=100.70 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhhhCCCC---------------CCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDA---------------TDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~---------------~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+++|+ ++|+|+|+|++|.||.+||++|||++|++||++.+
T Consensus 28 ~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~ 95 (105)
T 1v2y_A 28 ATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKK 95 (105)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEEC
T ss_pred ChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEeh
Confidence 589999999999999988 46799999999986579999999999999999965
No 52
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.19 E-value=1.8e-11 Score=96.57 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCe---e---ccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGK---H---LLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk---~---L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+||++||++|+..+|||+++|+|+|.|+ . |.+|++||++|||++|++|+|+-.
T Consensus 37 ~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 37 MSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp CCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred ChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 6999999999999999999999999884 3 433479999999999999999853
No 53
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=3.2e-11 Score=96.49 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhhh--CCCCCC-eEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDEC--GIDATD-MILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~--gip~~~-q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||++|+..+ |+|+++ |+|+|+||+|+| ++||++|||++|++|||+.+.
T Consensus 45 ~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D-~~tL~~y~i~~g~~i~lv~~~ 100 (107)
T 1x1m_A 45 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKD-DQTLDFYGIQPGSTVHVLRKS 100 (107)
T ss_dssp CBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCT-TCBHHHHTCCTTCEEEEEESS
T ss_pred CCHHHHHHHHHHHhccCCChhhcEEEEECCeECCC-CCcHHHcCCCCCCEEEEEeCC
Confidence 48999999999999 999999 999999999987 689999999999999999763
No 54
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=2.2e-11 Score=97.21 Aligned_cols=53 Identities=9% Similarity=0.132 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||++||.+|+..+|+|+++|+|+|+|+.|.| ++||++|||++|++|||+.+.
T Consensus 44 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~g~ti~lv~~~ 96 (106)
T 1ttn_A 44 DTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTD-KMKFEELKIPKDYVVQVIVSQ 96 (106)
T ss_dssp SHHHHHHHHHHHTTCCCSTTCEEEETTEECCT-TSHHHHCCCSSSCEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEeC
Confidence 48999999999999999999999999999987 689999999999999999753
No 55
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=95.14 Aligned_cols=52 Identities=27% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|+|+.+
T Consensus 38 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 38 ETVAQIKAHVASLEGIAPEDQVVLLAGAPLED-EATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CBHHHHHHHHHHHHTCCGGGCEEEETTEECCT-TSBHHHHTCCSSCEEEEECC
T ss_pred CcHHHHHHHHHHHhCcChhHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999864
No 56
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=1.8e-11 Score=95.65 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|+.|+| ++||++|||++|++|||+.+
T Consensus 37 ~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~ 88 (96)
T 1wx8_A 37 SNVRRFKKQISKYLHCNADRLVLIFTGKILRD-QDILSQRGILDGSTVHVVVR 88 (96)
T ss_dssp CCHHHHHHHHHHHTCSCTTTBCCEETTEECCT-TSCHHHHTCCTTEEEECCBC
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEECCC-cCCHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999875
No 57
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.16 E-value=3.7e-11 Score=93.11 Aligned_cols=53 Identities=15% Similarity=0.103 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEE---ecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILL---NNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li---~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||++|++.+|||+++|+|+ |+|++|+| +.+|++|||++|++|+|+...
T Consensus 28 ~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-DVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp SBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-TSBHHHHTCCTTEEEEEECCC
T ss_pred CCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-CCCHHHcCCCCCCEEEEEecC
Confidence 489999999999999999999999 99999997 689999999999999998753
No 58
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.15 E-value=4e-11 Score=94.18 Aligned_cols=52 Identities=17% Similarity=0.032 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEec--Ce---eccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNN--GK---HLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~--Gk---~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
+||++||++|+..+|||+++|+|+|. |+ .|.+|++||++|||++|++|+|+-
T Consensus 38 ~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 38 LTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp CBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred CHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 59999999999999999999999998 55 563347999999999999999873
No 59
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.13 E-value=6.4e-11 Score=97.54 Aligned_cols=52 Identities=23% Similarity=0.373 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||.+|+..+|||+++|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~lv~~ 103 (125)
T 1j8c_A 52 SSVQQFKEAISKRFKSQTDQLVLIFAGKILKD-QDTLIQHGIHDGLTVHLVIK 103 (125)
T ss_dssp CCHHHHHHHHHHHHCSCSSSEEEEETTEEEST-TSCGGGTTCSSSEEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 58999999999999999999999999999987 68999999999999999865
No 60
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.13 E-value=5.5e-11 Score=95.64 Aligned_cols=52 Identities=19% Similarity=0.242 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+||++||++|+..+|||+++|+|+|+|++|+| +.||++|||++|++|+|+.+
T Consensus 52 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 52 ENVGSLKEKIAGEIQIPANKQKLSGKAGFLKD-NMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp SBHHHHHHHHHHHTTCCTTTSEEECSSSBCCT-TSBTTTTTCSSSCEEEEECS
T ss_pred CcHHHHHHHHHHHHCCCHHHeEEEECCEECCC-CCcHHHCCCCCCCEEEEEEE
Confidence 58999999999999999999999999999998 68999999999999999864
No 61
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.13 E-value=7.6e-11 Score=92.45 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|+|++.|+|+|+|+.|.| ++||++|||++|++|+|+.+
T Consensus 21 ~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D-~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp CBHHHHHHHHHHHTCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999865
No 62
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=95.40 Aligned_cols=50 Identities=14% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHhh-hCCC-CCCeEEEecCeeccCCccccccc--CCCCCcEEEEE
Q psy17672 1 MDVEQFRLICQDE-CGID-ATDMILLNNGKHLLEDGSCLKQA--GVRDGDIILVA 51 (319)
Q Consensus 1 ~tv~~lK~~i~~e-~gip-~~~q~Li~~Gk~L~d~~~tL~~~--gI~~~d~l~l~ 51 (319)
.||.+||++|+++ .|+| +++|+|||+||+|+| ++||++| ||++|++|||+
T Consensus 46 ~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D-~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 46 WTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPD-HLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp SBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECT-TSBTHHHHTTTCSEEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCChhhEEEEECCEECCC-CCCHHHHhcCCCCCCEEEeC
Confidence 4899999999986 4666 599999999999998 6899999 99999999985
No 63
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.12 E-value=7.6e-11 Score=94.93 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||.+|+..+|+|+++|+|+|+|+.|.| +.||++|||++|++|+|+.+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTTTTTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHhCCChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999865
No 64
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=8.2e-11 Score=95.28 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|+|+.+
T Consensus 30 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~ygI~~gstI~l~~~ 81 (114)
T 2kdi_A 30 DTIDNVKSKIQDKEGIPPDQQRLIWAGKQLED-GRTLSDYNIQRESTLHLVLR 81 (114)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTTTTTCCSSCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCEECCC-CCcHHHCCCCCCCEEEEEEE
Confidence 48999999999999999999999999999987 68999999999999999975
No 65
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.71 E-value=6.8e-12 Score=93.42 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|+|++.|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 21 ~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d-~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 21 TSILQLKEVVAKQQGVPADQLRVIFAGKELPN-HLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 48999999999999999999999999999987 68999999999999999864
No 66
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=1.1e-10 Score=90.93 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~~ 55 (319)
.||.+||++|+... +++|+|+|+|++|+|+++||++|||++|++|||+.+.+
T Consensus 28 ~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 28 DTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp SBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 48999999999887 89999999999999843899999999999999997643
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.09 E-value=9.3e-11 Score=94.92 Aligned_cols=52 Identities=17% Similarity=0.280 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|||+++|+|+|+|+.|+| +.||++|||++|++|||+.+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D-~~tL~~y~i~~g~~i~lv~r 107 (115)
T 1we7_A 56 DQVSVIKVKIHEATGMPAGKQKLQYEGIFIKD-SNSLAYYNMASGAVIHLALK 107 (115)
T ss_dssp SBTHHHHHHHHHHSSCCTTTEEEEETTEEECT-TSBHHHHTCCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCChHHEEEEECCEECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 48999999999999999999999999999987 68999999999999999864
No 68
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.08 E-value=5.2e-11 Score=93.27 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|||+++|+|+|+|++| |+ .||++|||++|++|||+..
T Consensus 37 ~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 37 STGSELKQKIHSITGLPPAMQKVMYKGLVP-ED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp SBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SS-SBHHHHCCCTTEEEEECCS
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEEECCeeC-Cc-CcHHHCCCCCCCEEEEEec
Confidence 489999999999999999999999999999 43 4999999999999999865
No 69
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=92.78 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|++.|+|+|+|+.|.| ++||++|||++|++|+|+.+
T Consensus 56 ~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D-~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 56 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEETTEECCS-SCBTTTTTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCcccEEEEECCEECCC-CCcHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999865
No 70
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=99.07 E-value=1e-09 Score=86.50 Aligned_cols=91 Identities=14% Similarity=0.287 Sum_probs=68.2
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceee-EeeccceeEEEeEEEEEEEEEcCEEEEeeEEEe
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAG-VAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSIL 258 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g-~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~Vl 258 (319)
+.++.++|||+++.||+||||..|+++. ..++. ++.- +..|+|..-.......+++++.++.....+.|-
T Consensus 8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg----~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV~ 78 (99)
T 3ec0_A 8 RPVVTAYIEGQPVEVLLDTGADDSIVAG-----IELGN----NYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTG 78 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEESS-----CCCCS----CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEcC-----cccCC----CCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEeC
Confidence 4678999999999999999999999963 44432 2211 567888543333456788999998866677663
Q ss_pred cCCCCceeechhhhhhccEEEEc
Q psy17672 259 EEQPMDMLLGLDMLRRHECCIDL 281 (319)
Q Consensus 259 ~~~~~d~ILG~D~L~~~~~~ID~ 281 (319)
+ ..-=|+|-|+|.+.+|.++|
T Consensus 79 ~--tPvniiGRnlLtqlG~tLnf 99 (99)
T 3ec0_A 79 D--TPINIFGRNILTALGMSLNL 99 (99)
T ss_dssp C--CSSCEECHHHHHHHTCEEEC
T ss_pred C--CCcCeeehhhHhhcCcEEeC
Confidence 3 34478999999999999886
No 71
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.06 E-value=2.9e-10 Score=92.43 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHh------hhCC--CCCCeEEEecCeeccCCcccccccCCCCCc--EEEEEccCCC
Q psy17672 1 MDVEQFRLICQD------ECGI--DATDMILLNNGKHLLEDGSCLKQAGVRDGD--IILVAMPGRG 56 (319)
Q Consensus 1 ~tv~~lK~~i~~------e~gi--p~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d--~l~l~~~~~~ 56 (319)
.||.+||++|+. ..|+ |+++|+|||.||+|+| +.||++|+|+.++ +|||+.+...
T Consensus 37 ~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD-~~TL~~y~I~~~~~~tlhLvlr~~~ 101 (116)
T 1wgh_A 37 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKTTVMHLVARETL 101 (116)
T ss_dssp CBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECS-SCBTTTTTCCSSCEEEEEEEECSSC
T ss_pred CHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCceEEEEEccCCC
Confidence 489999999998 4565 6999999999999998 6999999998774 6888876443
No 72
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.06 E-value=1.9e-10 Score=97.60 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|+|+++|+|+|+|++|+| +.||++|||++|++|||+.+
T Consensus 102 ~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 102 QTVAHLKQQVSGLEGVQDDLFWLTFEGKPLED-QLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp SBHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCCCHHHEEEEECCeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999998 68999999999999999864
No 73
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=94.43 Aligned_cols=54 Identities=13% Similarity=0.080 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHh------hhCCC--CCCeEEEecCeeccCCcccccccCCCCCc--EEEEEccCC
Q psy17672 1 MDVEQFRLICQD------ECGID--ATDMILLNNGKHLLEDGSCLKQAGVRDGD--IILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~------e~gip--~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d--~l~l~~~~~ 55 (319)
.||++||++|++ ..|+| +++|+|||+||+|+| ++||++|||++|+ +|||+.+..
T Consensus 38 ~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD-~~TL~~y~I~~~~~~tlhlv~r~~ 101 (125)
T 2gow_A 38 DSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG-NVTLGALKLPFGKTTVMHLVARET 101 (125)
T ss_dssp SBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEES-SCBTGGGCCCTTSEEEEEEEECSC
T ss_pred cHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCC-CCcHHHcCCCCCCceEEEEEecCC
Confidence 489999999998 66884 899999999999998 6899999999888 577776643
No 74
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.04 E-value=2.7e-10 Score=98.42 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|++|+| ++||++|||++|++|||+.+
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CBHHHHHHHHHHHHCCCTTTEEEEETTEECCT-TSBGGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcCHHHEEEEECCccccC-cCcHHHcCCCCCCEEEEEEE
Confidence 48999999999999999999999999999998 68999999999999999964
No 75
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=1.7e-10 Score=90.29 Aligned_cols=52 Identities=29% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecC---ee---c-cCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNG---KH---L-LEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~G---k~---L-~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+||++||++|+..+|||+++|+|+|.| +. | +| ++||++|||++|++|||+..
T Consensus 29 ~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D-~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE-DALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp SBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCS-SSBTTSSSCCTTCEEEEBCC
T ss_pred CHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCC-cCCHhHCCCCCCCEEEEEEC
Confidence 589999999999999999999999986 54 4 55 79999999999999999864
No 76
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.03 E-value=2.7e-10 Score=93.80 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=45.7
Q ss_pred CCHHHHHHHHH-----hhhCCCC--CCeEEEecCeeccCCcccccccCCCCC------cEEEEEcc
Q psy17672 1 MDVEQFRLICQ-----DECGIDA--TDMILLNNGKHLLEDGSCLKQAGVRDG------DIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~-----~e~gip~--~~q~Li~~Gk~L~d~~~tL~~~gI~~~------d~l~l~~~ 53 (319)
.||++||++|+ +..|||+ ++|+|||+||+|+| ++||++|+|++| .++||+.+
T Consensus 38 dTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD-~~TLsdy~I~~~~~~~~v~tmhlVlr 102 (126)
T 1se9_A 38 TTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLEN-SKTVKDYRSPVSNLAGAVTTMHVIIQ 102 (126)
T ss_dssp CBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCT-TSBGGGGSCCTTSCTTCCEEEEEEEC
T ss_pred CHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcC-CCcHHHcCCCcCCccCCcEEEEEEec
Confidence 58999999994 4568986 89999999999998 699999999999 57888865
No 77
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=99.02 E-value=3.8e-09 Score=83.32 Aligned_cols=91 Identities=16% Similarity=0.301 Sum_probs=69.5
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCcccccccee-eEeeccceeEEEeEEEEEEEEEcCEEEEeeEEEe
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWA-GVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSIL 258 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~-g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~Vl 258 (319)
+.++.++|+|+.+.||+||||..|+++. ..++. +++ .+..|+|..........+++++.++.....+.|-
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~----~wkpk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV~ 78 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPG----RWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVG 78 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESC-----CSSCC----CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEec-----ccCCC----CCCCcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEeC
Confidence 4578999999999999999999999995 34442 222 2567888654444566788999998877777773
Q ss_pred cCCCCceeechhhhhhccEEEEc
Q psy17672 259 EEQPMDMLLGLDMLRRHECCIDL 281 (319)
Q Consensus 259 ~~~~~d~ILG~D~L~~~~~~ID~ 281 (319)
+ ..-=|+|-|+|.+.+|.++|
T Consensus 79 ~--tPvniiGRd~Ltqlg~tLnf 99 (99)
T 2hs1_A 79 P--TPVNIIGRNLLTQIGATLNF 99 (99)
T ss_dssp C--CSSCEECHHHHTTTTCEEEC
T ss_pred C--CccCchhHhHHHHcCCEEeC
Confidence 3 33458999999999999885
No 78
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.97 E-value=4.8e-10 Score=98.60 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|||+++|+|+|+|++|+| +.||++|||++|++|+|+.+
T Consensus 126 ~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D-~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 126 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp CBHHHHHHHHHHHHCCCGGGCCEEETTEECCT-TCBGGGGTCCTTCEEEECCC
T ss_pred CcHHHHHHHHHhccCCCHHHEEEEECCEECCC-CCCHHHCCCCCCCEEEEEEE
Confidence 58999999999999999999999999999998 68999999999999999865
No 79
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.97 E-value=5.8e-11 Score=97.96 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|||+++|+|+|+|++|+| +.||++|||++|++|+|+.+
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp -----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCcChHHEEEEECCEECCC-CCchhhhccCCCCEEEEEEE
Confidence 48999999999999999999999999999997 68999999999999999865
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.96 E-value=7.4e-10 Score=93.94 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEE-e-cCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILL-N-NGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li-~-~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|+..+|||+++|+|+ | +|++|+| +.||++|||++|++|+|+.+
T Consensus 23 ~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d-~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 23 MSVSELKAQITQKIGVHAFQQRLAVHPSGVALQD-RVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCT-TSCGGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCC-CCCHHHcCCCCCCEEEEEcc
Confidence 489999999999999999999999 9 8999987 78999999999999999976
No 81
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.95 E-value=8.9e-10 Score=90.17 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecC---e---eccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNG---K---HLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~G---k---~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+||++||++|+..+|||+++|+|+|.| + .|.+|.+||++|||++|++|||+..
T Consensus 28 ~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp SBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred CcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 589999999999999999999999987 5 3433479999999999999999864
No 82
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.94 E-value=1e-09 Score=91.67 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||..|+...|+|++.|+|+|+|+.|+| ++||++|||++|++|+|+.+
T Consensus 97 ~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r 148 (152)
T 3b08_A 97 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 148 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHhCcChhhEEEEECCEECCC-CCCHHHcCCCCCCEEEEEEe
Confidence 48999999999999999999999999999987 68999999999999999865
No 83
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.94 E-value=1e-09 Score=94.51 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.+||++|+..+|+|+++|+|+|+|+.|+| +.||++|||++|++|+|+.+
T Consensus 41 ~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~ 92 (172)
T 3u30_A 41 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 92 (172)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TCBTGGGTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHCcChHHEEEEECCccccc-cCCHhHcCCcccceeeeeec
Confidence 48999999999999999999999999999998 68999999999999999965
No 84
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=6.5e-10 Score=85.97 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHhh-hCCCCCCeEEEec--CeeccCCcccccccCCCCCcEEEEE
Q psy17672 1 MDVEQFRLICQDE-CGIDATDMILLNN--GKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 1 ~tv~~lK~~i~~e-~gip~~~q~Li~~--Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
.||++||++|+.. .|+|+++|+|+|. ||+|+| ++||++|||++|++||+.
T Consensus 34 ~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D-~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 34 ATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKD-EDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp CBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCT-TCBTTTSSCCSEEEEEEC
T ss_pred CcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCC-CCCHHHcCCCCCCEEEEE
Confidence 4899999999995 8999999999976 999987 689999999999999873
No 85
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.92 E-value=1.5e-09 Score=90.70 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||+.|+..+|+|+++|+|+|+|++|+| +.||++|||++|++|+|+.+
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~tL~~~~i~~~~~l~l~~~ 72 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 72 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCT-TSBTGGGTCCTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEECCeECcC-cccHHHhccCCCCeeEEEee
Confidence 48999999999999999999999999999987 68999999999999999875
No 86
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.91 E-value=1e-08 Score=90.69 Aligned_cols=92 Identities=14% Similarity=0.272 Sum_probs=72.2
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccce-eeEeeccceeEEEeEEEEEEEEEcCEEEEeeEEEe
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRW-AGVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSIL 258 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~-~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~Vl 258 (319)
+..+.++|+|+++.||+||||+.|+++ +++++. ++ ..+..|+|..........+++++.++.....+.|-
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg----~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlVg 78 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPG----XWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLVG 78 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSS----CEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCC----CCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEeeC
Confidence 457889999999999999999999998 355553 32 12567888654455566789999998877666663
Q ss_pred cCCCCceeechhhhhhccEEEEcc
Q psy17672 259 EEQPMDMLLGLDMLRRHECCIDLR 282 (319)
Q Consensus 259 ~~~~~d~ILG~D~L~~~~~~ID~~ 282 (319)
....-|||.|+|.+++|.+|+.
T Consensus 79 --~tPvnIiGRd~LtqlG~tLnf~ 100 (203)
T 3ka2_A 79 --PTPVNIIGRNLLTQIGXTLNFX 100 (203)
T ss_dssp --CCSSCEECHHHHTTTTCEEEGG
T ss_pred --CCCcCccchhhhhhcCceEEec
Confidence 3466699999999999999998
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.90 E-value=9.8e-10 Score=87.86 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCe-----------ec---cCCcccccccCCCCCcEEEEEccCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGK-----------HL---LEDGSCLKQAGVRDGDIILVAMPGR 55 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk-----------~L---~d~~~tL~~~gI~~~d~l~l~~~~~ 55 (319)
.||.+||++|+..+|||+++|+|+|+|+ .| .++++||++|||++|++|||+....
T Consensus 28 ~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~ 96 (107)
T 1wf9_A 28 ITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGE 96 (107)
T ss_dssp SBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSC
T ss_pred CcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 4899999999999999999999999998 43 2347899999999999999987643
No 88
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.90 E-value=1.4e-10 Score=98.56 Aligned_cols=51 Identities=20% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||++||+.|++.+|||+++|+|+|+|++|+| +.||++|||++|++|+|+.
T Consensus 21 ~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D-~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 21 DTIDNVKSKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp ----------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCHHHEEEEECCEEccc-cCcHHHcCCCCCCEEEEEe
Confidence 48999999999999999999999999999998 6899999999999999984
No 89
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=86.20 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEe--cCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLN--NGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~--~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.||++||++|++.+|||+++|+|+| .|+ |+| +.+|++|||+.|++|||+..
T Consensus 29 ~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D-~~tLs~~~I~~gstL~lvl~ 81 (100)
T 2dzm_A 29 CTVGEIKQILENELQIPVSKMLLKGWKTGD-VED-STVLKSLHLPKNNSLYVLTP 81 (100)
T ss_dssp SBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCT-TSBHHHHCCCSEEEEEECCS
T ss_pred CcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCC-cCCHHHcCCCCCCEEEEEec
Confidence 4899999999999999999999996 666 887 68999999999999999864
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.83 E-value=4.2e-09 Score=80.71 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEec--Ceecc--CCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNN--GKHLL--EDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~--Gk~L~--d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+||+.|++++|||++.|+|+|+ ||+|. |+++||++|||++|++|+|....
T Consensus 21 ~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 21 TRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 48999999999999999999999987 48884 34789999999999999998654
No 91
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.81 E-value=7.1e-09 Score=81.18 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecC------e-eccCCcccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNG------K-HLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~G------k-~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
|||.+||.+|+..+|+|+..|+|+|.+ . .|.||.++|..|||.+|++|||.-.
T Consensus 33 ~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~ 92 (97)
T 1wjn_A 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWS 92 (97)
T ss_dssp SBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEec
Confidence 699999999999999999999999873 2 2666689999999999999999864
No 92
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.70 E-value=6e-08 Score=78.58 Aligned_cols=94 Identities=21% Similarity=0.282 Sum_probs=66.2
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceee-E-eeccceeEEEeEEEEEEEEEcCEE-----EE
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAG-V-AKGVGVQQIIGRIHMVQVAIEKDF-----LT 252 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g-~-a~Gvg~~~~~g~v~~~~i~IG~~~-----~~ 252 (319)
..++ ++|||+++.||+||||..|+|+..- +.. .+.++.. + ..|+|..........+++++.+.. ..
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~-----~~~-~p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~~ 86 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNRRD-----FQV-KNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCIF 86 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEGGG-----CCC-TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEEE
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcccc-----ccc-CCCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCcceeE
Confidence 5677 9999999999999999999999632 310 0222222 3 677875433335566788898866 55
Q ss_pred eeEEEecCCC-CceeechhhhhhccEEEE
Q psy17672 253 TSLSILEEQP-MDMLLGLDMLRRHECCID 280 (319)
Q Consensus 253 ~~f~Vl~~~~-~d~ILG~D~L~~~~~~ID 280 (319)
..+.|.+..+ .-=|+|-|+|.+.+|.+.
T Consensus 87 gtvlV~p~tP~~vniiGRd~Ltqlg~tL~ 115 (116)
T 2hah_A 87 GNVCVLEDNSTPVNILGRDNMIKFNIRLV 115 (116)
T ss_dssp EEEEEETTCCCSSEEECHHHHTTTTCCCC
T ss_pred EEEEECCCCCccccEecHHHHhHcCCEEe
Confidence 6777877433 136899999999998764
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.67 E-value=1.3e-08 Score=96.35 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEE---ecCeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILL---NNGKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li---~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||++||+.|++.+|||+++|+|+ |+|++|+| +.||++|||++|++|+|+..+
T Consensus 25 ~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D-~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 25 DTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAAD-NVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCT-TSBTTSSCCC--CEEEEECCC
T ss_pred CcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCc-cccHHHcCCCCCCEEEEEccc
Confidence 489999999999999999999999 89999998 689999999999999998653
No 94
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=8.9e-08 Score=74.80 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=48.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+..++++.|+|+++++|+|+|+.|.+ ++|+++|++++||+|+|+..
T Consensus 29 ~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 29 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp CTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTCEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 6789999999999999999999999999997 68999999999999999864
No 95
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.52 E-value=1.4e-07 Score=69.88 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEE
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
+++.|+..++++.|+|+.+++|+|+|+.|.+ ++|.++|++++||+|++.
T Consensus 23 ~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 23 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp CTHHHHHHHHHHHTCCTTTCEEEETTEECCT-TCCTTTTTCCTTEEEEEE
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEE
Confidence 6788999999999999999999999999987 689999999999999986
No 96
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.46 E-value=2.3e-07 Score=70.00 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=46.2
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEE
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
+++.|+..++++.|+++++++|+|+|+.|.+ ++|.++|++.+||+|++.
T Consensus 30 ~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 30 PLKVLMSHYEEAMGLSGHKLSFFFDGTKLSG-KELPADLGLESGDLIEVW 78 (79)
T ss_dssp CHHHHHHHHHHHHTCTTCCCEEEETTEECCS-CCCHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEe
Confidence 6789999999999999999999999999987 689999999999999985
No 97
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.46 E-value=2e-08 Score=87.97 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
+||++||++|+...|||+++|+|||+|++|+| +.||+ ++++|||+.
T Consensus 21 dTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD-~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 21 TSVLDLKSQISQDMGFEIDMMTLVNNGFIAPN-TELVT-----DDVTYYLSL 66 (189)
T ss_dssp ----------------------------------------------------
T ss_pred ChHHHHHHHHHHHhCcChhHEEEEecCeECCC-CCccc-----CCCEEEEEE
Confidence 58999999999999999999999999999998 68998 899999984
No 98
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.45 E-value=1.7e-06 Score=76.40 Aligned_cols=91 Identities=15% Similarity=0.294 Sum_probs=68.4
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCcccccccee-eEeeccceeEEEeEEEEEEEEEcCEEEEeeEEEe
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWA-GVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSIL 258 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~-g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~Vl 258 (319)
...+.++|+|+++.||+||||..|+++ ...++ .++. -+..|+|..-.......+++++.++.....+.|-
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lp----g~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlVg 182 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLP----GXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLVG 182 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred CCcEEEEECCEEEeeeecccCCceeee-----cccCC----CCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEEC
Confidence 456789999999999999999999996 34444 2231 1567888543334446678999998776677664
Q ss_pred cCCCCceeechhhhhhccEEEEc
Q psy17672 259 EEQPMDMLLGLDMLRRHECCIDL 281 (319)
Q Consensus 259 ~~~~~d~ILG~D~L~~~~~~ID~ 281 (319)
+ ..-=|+|-|.|.+++|.++|
T Consensus 183 p--tPvniiGRn~LtqlG~tl~f 203 (203)
T 3ka2_A 183 P--TPVNIIGRNLLTQIGXTLNF 203 (203)
T ss_dssp C--CSSCEECHHHHGGGTCEEEC
T ss_pred C--CCcCeechhhHHHhCCeeeC
Confidence 4 46678999999999999875
No 99
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.41 E-value=3.7e-07 Score=70.86 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+..+++..|+|+++++|+|+|+.|.+ ++|.++|++.+||+|.++..
T Consensus 27 ~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 27 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp CTHHHHHHHHHHTTCCSTTEEEEETTEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 6788999999999999999999999999987 68999999999999999865
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.37 E-value=5.1e-07 Score=70.28 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+..++...|+++++++|+|+|+.|.+ ++|.++|++.+||+|+++..
T Consensus 39 ~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~-~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 39 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp CHHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCccceEEEECCEEcCC-CCCHHHcCCCCCCEEEEEee
Confidence 6789999999999999999999999999987 68999999999999999864
No 101
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=6.8e-07 Score=71.10 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
++..|+..+++..|+++++++|+|+|+.|.+ ++|.++|++.+||+|+|+..
T Consensus 46 ~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~-~~Tp~dl~medgD~Idv~~~ 96 (104)
T 1wz0_A 46 PLSKLMKAYCERQGLSMRQIRFRFDGQPINE-TDTPAQLEMEDEDTIDVFQQ 96 (104)
T ss_dssp CHHHHHHHHHHHHTCCTTTSCEESSSSBCCT-TSCTTTTTCCTTEEEEECCC
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEe
Confidence 6889999999999999999999999999987 68999999999999999864
No 102
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.22 E-value=1.4e-06 Score=69.45 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+..++++.|+++++++|+|+|+.|.+ ++|.++|++.+||+|.++..
T Consensus 52 ~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~-~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 52 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp CTHHHHHHHHHHHTCCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCcccEEEEECCeEcCC-CCCHHHcCCCCCCEEEEEee
Confidence 5788999999999999999999999999987 68999999999999999864
No 103
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.19 E-value=9.1e-07 Score=71.06 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=47.9
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+..+++..|+|+++++|+|+|+.|.+ ++|.++|++.+||+|+|+..
T Consensus 48 ~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~-~~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 48 ALKKLIDTYCKKQGISRNSVRFLFDGTPIDE-TKTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp SHHHHHHHHHHHHTCCSSSCEEESSSCBCCS-SSHHHHHHCSSEEEEEEECC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEEc
Confidence 6889999999999999999999999999997 68999999999999999865
No 104
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.15 E-value=1.4e-06 Score=70.08 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=55.4
Q ss_pred eEEEEEEEcCEEEEEEEcCCccccccCHHHHHHcCCcccccccee-eEeecccee-EEEeEEEEE-EEE-EcCEEEEeeE
Q psy17672 180 MLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWA-GVAKGVGVQ-QIIGRIHMV-QVA-IEKDFLTTSL 255 (319)
Q Consensus 180 ~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~-g~a~Gvg~~-~~~g~v~~~-~i~-IG~~~~~~~f 255 (319)
+..+.++|+|+++.||+||||..|+|+. ..++..-..... -+..|+|.. +..- .... ..+ +.++..-...
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~q-y~~~~~~~~i~g~k~i~tv 82 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQ-SSKYLTWRDKENNSGLIKP 82 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEE-ESSCEEEECTTCCEEEECC
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEE-eccceEEEecCCCEEEEEE
Confidence 4567899999999999999999999984 344322111000 145677742 2111 1111 122 4565544444
Q ss_pred EEecCCCCceeechhhhhhccEEEEccCC
Q psy17672 256 SILEEQPMDMLLGLDMLRRHECCIDLRKN 284 (319)
Q Consensus 256 ~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~ 284 (319)
.|+... .-=|+|-|.|.+++|.+++-+.
T Consensus 83 lV~~pt-PvNIiGRn~LtqlG~tLnfp~~ 110 (114)
T 3sqf_A 83 FVIPNL-PVNLWGRDLLSQMKIMMASPND 110 (114)
T ss_dssp EEETTC-SSCEECHHHHTTSCC-------
T ss_pred EECCCC-cccEEchhhHhhcCcEEECCCc
Confidence 565333 4456999999999999887643
No 105
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=98.12 E-value=1.9e-06 Score=70.49 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=51.5
Q ss_pred EcCEEEEEEEcCCccccccCHHHHHHcCCccccccceee--EeeccceeEEEeEEE-EEEEEEcCE--EEEeeEEEecCC
Q psy17672 187 VNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAG--VAKGVGVQQIIGRIH-MVQVAIEKD--FLTTSLSILEEQ 261 (319)
Q Consensus 187 Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g--~a~Gvg~~~~~g~v~-~~~i~IG~~--~~~~~f~Vl~~~ 261 (319)
|+|+.+.||+||||..|+++. ..++..-.+...+ ...|+|......... .+++++-+. .....+.|.+..
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~~g~~~~tvlV~P~~ 101 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISE-----EDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAV 101 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEET-----TTSCTTSCEEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCEE
T ss_pred CCCEEEEEEecCCCCcEEEec-----ccCCCcceeeccccceeeecCceEeeEEeCCceEEEEeCCCCcEEEEEEECcCC
Confidence 999999999999999999984 3343221101011 156666432222233 456777665 343456666631
Q ss_pred --CCceeechhhhhhccEEEE
Q psy17672 262 --PMDMLLGLDMLRRHECCID 280 (319)
Q Consensus 262 --~~d~ILG~D~L~~~~~~ID 280 (319)
..--|+|-|.|.+.+|.+.
T Consensus 102 ~~tPvnIiGRdlLtqlG~tL~ 122 (124)
T 2rsp_A 102 AMVRGSILGRDCLQGLGLRLT 122 (124)
T ss_dssp ESCSSEEECHHHHHHTTCEEE
T ss_pred CCCceeEECHhHHhhCCcEEe
Confidence 1336899999999999864
No 106
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.76 E-value=4.6e-05 Score=61.49 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
++..|+....++.|+++.+++++|+|+.|.+ +.|.+++++.+||+|.+...
T Consensus 62 ~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~-~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 62 HLKKLKESYCQRQGVPMNSLRFLFEGQRIAD-NHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CTHHHHHHHHHHHTCCTTSEEEEETTEECCT-TCCTTTTTCCTTCEEEEEEC
T ss_pred hHHHHHHHHHHHhCCChhhEEEEECCeECCC-CCCHHHcCCCCCCEEEEEee
Confidence 5678899999999999999999999999987 68999999999999999864
No 107
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.59 E-value=6.7e-05 Score=66.18 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=47.4
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
++..|+...+++.|+|+.+++++|+|+.|.+ +.|.+++++.+||+|.++..
T Consensus 50 ~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~-~~TP~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 50 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp CTHHHHHHHHHHHSSCGGGEEEEETTEECCT-TCCTTTTTCCTTEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCChhhEEEEECCEEcCC-CCCHHHcCCCCCCEEEEEec
Confidence 5788999999999999999999999999997 68999999999999999854
No 108
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=97.52 E-value=5.3e-05 Score=55.98 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=39.0
Q ss_pred cCCCCh--HHHHHHHhhCHHHHH----HHHhcCchhHHHHhcChHHHHHHHHH
Q psy17672 76 AQLQDP--AHVRDLLLACPDQLA----LLKQNNPRLSEALSTGKDAFTKVFKE 122 (319)
Q Consensus 76 ~~~~dp--e~~r~~il~nP~~l~----~L~~~nP~La~ai~~~~~~f~~~l~~ 122 (319)
.+.++| ..+|+++.+||+++. +|.++||+|++.|..|+++|.++|.+
T Consensus 8 ~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e 60 (72)
T 1pve_A 8 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNE 60 (72)
T ss_dssp GGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHS
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcC
Confidence 345566 359999999998766 67889999999999999999998853
No 109
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=97.49 E-value=0.0001 Score=52.74 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=39.4
Q ss_pred cCCCChH--HHHHHHhhCHHHHH----HHHhcCchhHHHHhcChHHHHHHHH
Q psy17672 76 AQLQDPA--HVRDLLLACPDQLA----LLKQNNPRLSEALSTGKDAFTKVFK 121 (319)
Q Consensus 76 ~~~~dpe--~~r~~il~nP~~l~----~L~~~nP~La~ai~~~~~~f~~~l~ 121 (319)
...++|. .+|+++.+||+++. +|.++||+|++.|..|+++|.+++.
T Consensus 6 ~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~ 57 (61)
T 2f4m_B 6 FLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLN 57 (61)
T ss_dssp GGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHT
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHc
Confidence 4567774 69999999998766 6788999999999999999999874
No 110
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00013 Score=63.86 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
++..|+....+..|+++.+++++|+|+.|.+ ++|.+++++.|||+|.++..
T Consensus 78 pL~KLmeAYcERqGL~~~sIRFLFDGqRI~~-ddTPeDLdMEDGDtIDV~le 128 (207)
T 3tix_A 78 PLRRLMEAFAKRQGKEMDSLTFLYDGIEIQA-DQTPEDLDMEDNDIIEAHRE 128 (207)
T ss_dssp CTHHHHHHHHHHTTCCGGGSCEEETTEECCS-SCCTTTTTCCTTEEEEECCC
T ss_pred hHHHHHHHHHHHhCCCcccEEEEECCeecCC-CCCHHHcCCCCCCEEEEEEe
Confidence 5678899999999999999999999999997 68999999999999999864
No 111
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.41 E-value=0.0002 Score=57.32 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=56.1
Q ss_pred eEEEEEEEc-----CEEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcC----EE
Q psy17672 180 MLYINCKVN-----GYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEK----DF 250 (319)
Q Consensus 180 ~l~v~v~In-----g~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~----~~ 250 (319)
+..+.++|+ |+.+.||+||||..|++.. ..++..-......+..|+|.....-.....++.+-. ..
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpfr~~p 84 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTP 84 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSSEEEESSCEEEECTTCCSC
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceeeeEecCCCeEEEeccCCcc
Confidence 456889999 9999999999999999974 444432211111255677643111122233343332 11
Q ss_pred EEeeEEEecCCCCceeechhhhhhccEEEE
Q psy17672 251 LTTSLSILEEQPMDMLLGLDMLRRHECCID 280 (319)
Q Consensus 251 ~~~~f~Vl~~~~~d~ILG~D~L~~~~~~ID 280 (319)
+..+...++..+.=-|||-|.|.+.+..+.
T Consensus 85 v~l~~~lv~~~~~w~iigRd~l~q~q~~l~ 114 (116)
T 3liy_A 85 IVLTSCLVDTKNNWAIIGRDALQQCQGVLY 114 (116)
T ss_dssp EEESSCEEETTSCCCEECHHHHHHTTCEEE
T ss_pred eeeceEEEcCCCceeEechhHHhhhccEEe
Confidence 112222333333447999999999886654
No 112
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.35 E-value=0.00011 Score=55.45 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCee---c-cCCcccccccCCCCCcEEEEE
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKH---L-LEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~---L-~d~~~tL~~~gI~~~d~l~l~ 51 (319)
.|+.+|+.+|++.++++.+.|.|+++-.+ | .+.+.||+++||+.||+|+|.
T Consensus 24 ~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 24 ETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred ChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 37999999999999999999888765443 3 123679999999999999974
No 113
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.20 E-value=0.00025 Score=55.09 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeecc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLL 31 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~ 31 (319)
.||..||+.|++++|||+++|+|+|.||.|.
T Consensus 34 etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 34 NTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 3799999999999999999999999998874
No 114
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=97.18 E-value=0.00026 Score=60.82 Aligned_cols=48 Identities=19% Similarity=0.319 Sum_probs=39.5
Q ss_pred ccCC-CChH--HHHHHHhhCHHHHHH----HHhcCchhHHHHhcChHHHHHHHHH
Q psy17672 75 TAQL-QDPA--HVRDLLLACPDQLAL----LKQNNPRLSEALSTGKDAFTKVFKE 122 (319)
Q Consensus 75 ~~~~-~dpe--~~r~~il~nP~~l~~----L~~~nP~La~ai~~~~~~f~~~l~~ 122 (319)
..+. ++|. .+|+++++||+++.. |.++||+|++.|..|++.|.++|.+
T Consensus 26 ~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLne 80 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLE 80 (171)
T ss_dssp --CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhC
Confidence 3566 8885 599999999987665 4559999999999999999999975
No 115
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.16 E-value=0.0011 Score=49.58 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhhhCCCCC-CeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDAT-DMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~-~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
+|.+|-..--.+.|||++ ..+|.|.|..|.. +.|+.+|+++|||.|-++.
T Consensus 31 ~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp-~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 31 TVKDLIKRYCTEVKISFHERIRLEFEGEWLDP-NDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp BHHHHHHHHHHHHTCCCCTTCEEEETTEECCT-TSBGGGSSCCTTCEEEEEC
T ss_pred CHHHHHHHHHHHcCCCcCceEEEEEcCcccCc-cCChhhhCCcCCceeeeee
Confidence 566666666677899999 9999999999985 6899999999999998763
No 116
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=97.05 E-value=0.00081 Score=56.37 Aligned_cols=96 Identities=14% Similarity=0.242 Sum_probs=62.7
Q ss_pred CEEEEEEEcCCccccccCHHHHHHc---C-------Cccc-----cccceee---Eeecccee--------EEEeEEEEE
Q psy17672 189 GYPVKAFVDSGAQTTIMSAKCAERC---N-------IMRL-----IDTRWAG---VAKGVGVQ--------QIIGRIHMV 242 (319)
Q Consensus 189 g~~v~aLVDTGA~~siIs~~~a~rl---g-------l~~~-----~~~~~~g---~a~Gvg~~--------~~~g~v~~~ 242 (319)
|.+++|=|||||..|-|+..-.+.. | +... ...+... +-...|.. ...-.|-..
T Consensus 17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV~~ 96 (146)
T 2pma_A 17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLL 96 (146)
T ss_dssp TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEEEE
T ss_pred CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEEEE
Confidence 7789999999999999987655422 1 1100 0000000 01111220 112234456
Q ss_pred EEEEcCEEEEeeEEEecCCC--CceeechhhhhhccEEEEccCC
Q psy17672 243 QVAIEKDFLTTSLSILEEQP--MDMLLGLDMLRRHECCIDLRKN 284 (319)
Q Consensus 243 ~i~IG~~~~~~~f~Vl~~~~--~d~ILG~D~L~~~~~~ID~~~~ 284 (319)
.++||+...++.|..-+... +.+|||-+||+..++.+|....
T Consensus 97 ~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~~ 140 (146)
T 2pma_A 97 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALT 140 (146)
T ss_dssp EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCC
T ss_pred EEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCchh
Confidence 89999999999999999654 8899999999999999998765
No 117
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=96.84 E-value=0.00018 Score=63.75 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
.+..|+....+..|+++.+++++|+|+.|.+ ++|.++++++|||+|.++..
T Consensus 42 pL~KLM~AYcERqGLs~~siRFLFDGqRI~d-ddTPadL~MEDGDtIDV~le 92 (227)
T 3v7o_A 42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 92 (227)
T ss_dssp ----------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCccceEEEECCEecCC-CCCHHHcCCCCCCEEEEEec
Confidence 4567888888899999999999999999997 68999999999999999854
No 118
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.63 E-value=0.0032 Score=49.16 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEE
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
++..|......+.|+++...+++|+|..|.. ++|.+++++.|||+|-+.
T Consensus 48 ~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~-~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 48 PLKTLMSHYEEAMGLSGRKLSFFFDGTKLSG-RELPADLGMESGDLIEVW 96 (97)
T ss_dssp CHHHHHHHHHHHTTCSSSCCEEEETTEECCS-CSCHHHHTCCTTEEEEEE
T ss_pred hHHHHHHHHHHHHCCCcccEEEEECCEEcCC-CCCHHHcCCCCCCEEEEe
Confidence 3566777777889999999999999999986 689999999999999875
No 119
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=96.35 E-value=0.034 Score=54.54 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=63.6
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCccccc----cce--ee----EeeccceeEEEeEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLID----TRW--AG----VAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~~----~~~--~g----~a~Gvg~~~~~g~v~~~ 242 (319)
....+++++.|+ ++++.+++|||++.+.+.. .|. ..|+-...-+ ..+ .+ +..|-|. ..|.+...
T Consensus 135 ~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~D 212 (451)
T 3qvc_A 135 ANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKD 212 (451)
T ss_dssp BCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEE
T ss_pred CCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEE
Confidence 345699999998 8999999999999998854 331 3343222111 111 11 2345444 78888888
Q ss_pred EEEEcCEEEEeeEEEecC----------CCCceeechhh
Q psy17672 243 QVAIEKDFLTTSLSILEE----------QPMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~~~f~Vl~~----------~~~d~ILG~D~ 271 (319)
.|.+|+..++..|.+... ...|+||||.+
T Consensus 213 tv~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 213 LVTIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EEEETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EEEECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 999999887766666543 34799999975
No 120
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=95.93 E-value=0.01 Score=52.38 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
++..|+...++..|+|+.+++++|+|+.+.+ ++|-+++.+.|+|+|.+...
T Consensus 42 ~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~-~~Tpk~L~~ed~d~I~~~~e 92 (209)
T 3uf8_A 42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 92 (209)
T ss_dssp CTHHHHHHHHHHHTCCGGGCEEEETTEECCT-TCCTTTTTCCTTEEEEEECS
T ss_pred HHHHHHHHHHHhhCCChheEEEEECCEeccC-CCChHHhhhcccccchhhcc
Confidence 4678899999999999999999999999987 68999999999999999864
No 121
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=95.79 E-value=0.029 Score=53.35 Aligned_cols=92 Identities=21% Similarity=0.355 Sum_probs=61.4
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCccccc----ccee------eEeeccceeEEEeEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLID----TRWA------GVAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~~----~~~~------g~a~Gvg~~~~~g~v~~~~ 243 (319)
...+++++.|+ ++++.++||||++.+.+.. .|. ..|+....-+ ..+. .+..|-|. ..|.+....
T Consensus 61 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 138 (375)
T 1miq_A 61 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDL 138 (375)
T ss_dssp CEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEE
Confidence 45789999998 8999999999999998743 331 1332211111 1111 13345554 578888889
Q ss_pred EEEcCEEEEeeEEEecC----------CCCceeechhh
Q psy17672 244 VAIEKDFLTTSLSILEE----------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~~~f~Vl~~----------~~~d~ILG~D~ 271 (319)
|.+|+..++..|.+... ...|+||||.+
T Consensus 139 v~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 139 VTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EEEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 99999876655655543 35799999875
No 122
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=95.59 E-value=0.054 Score=51.39 Aligned_cols=93 Identities=16% Similarity=0.286 Sum_probs=61.3
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCccccc----ccee--e----EeeccceeEEEeEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLID----TRWA--G----VAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~~----~~~~--g----~a~Gvg~~~~~g~v~~~ 242 (319)
....+++++.|+ .+++.+++|||++.+.+.. .|. ..|.....-+ ..+. + +..|-|. ..|.+...
T Consensus 54 ~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 131 (370)
T 3psg_A 54 LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYD 131 (370)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEE
T ss_pred cCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce--EEEEEEEE
Confidence 355799999998 6999999999999998853 331 1232221111 1111 1 2345554 58888888
Q ss_pred EEEEcCEEEE-eeEEEecCC--------CCceeechhh
Q psy17672 243 QVAIEKDFLT-TSLSILEEQ--------PMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~-~~f~Vl~~~--------~~d~ILG~D~ 271 (319)
.|.+|+..++ ..|.+.... ..|+||||.+
T Consensus 132 tv~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 132 TVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EEeeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 9999998776 566665432 3799999964
No 123
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.55 E-value=0.013 Score=44.14 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhhhCCCC-----CCeEEEecCeeccCCcccccccCCCCCcEEEE
Q psy17672 1 MDVEQFRLICQDECGIDA-----TDMILLNNGKHLLEDGSCLKQAGVRDGDIILV 50 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~-----~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l 50 (319)
+|+..|+..+-+-++++. -+.+..-.|..|.+ .++|++|||++||.|.+
T Consensus 27 ~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 27 HPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-ECKLSDCGITNGDRLEI 80 (81)
T ss_dssp SBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-TSBTGGGTCCTTCEEEE
T ss_pred hhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-CCEEeeCCcCCCCEEEE
Confidence 578888888888877765 23455667888887 68999999999999875
No 124
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=95.54 E-value=0.0022 Score=61.19 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+...++..|+++++++++|+|+.|.+ ++|.+++|++|||+|.++..
T Consensus 42 ~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~-~~TP~~L~MEDgD~Idv~~~ 92 (360)
T 3ix6_A 42 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQTPEDLDMEDNDIIEAHRE 92 (360)
T ss_dssp ----------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCeECCC-CCChHHcCCCccchhhhhhc
Confidence 4567888888899999999999999999987 68999999999999999843
No 125
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=95.51 E-value=0.056 Score=51.72 Aligned_cols=93 Identities=16% Similarity=0.311 Sum_probs=62.5
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH---HHcCCccccc----ccee------eEeeccceeEEEeEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA---ERCNIMRLID----TRWA------GVAKGVGVQQIIGRIH 240 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a---~rlgl~~~~~----~~~~------g~a~Gvg~~~~~g~v~ 240 (319)
....+++++.|+ ++++++++|||++...+.. .|. ..|.....-+ ..+. .+..|-|. ..|.+.
T Consensus 59 ~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~ 136 (383)
T 2x0b_A 59 MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLS 136 (383)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEE
T ss_pred CCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEE
Confidence 456799999998 7999999999999998843 332 2343222111 1111 13455554 578888
Q ss_pred EEEEEEcCEEEEeeEEEecC--------CCCceeechhh
Q psy17672 241 MVQVAIEKDFLTTSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 241 ~~~i~IG~~~~~~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
...|.||+..++..|.+... ...|+||||.+
T Consensus 137 ~Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 137 QDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred eeEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 88999999877655555542 25799999875
No 126
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=95.41 E-value=0.042 Score=50.91 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=60.6
Q ss_pred ccceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHc--CCccccc----c-ceee----EeeccceeEEEeEEEEEEEE
Q psy17672 177 SVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERC--NIMRLID----T-RWAG----VAKGVGVQQIIGRIHMVQVA 245 (319)
Q Consensus 177 ~~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rl--gl~~~~~----~-~~~g----~a~Gvg~~~~~g~v~~~~i~ 245 (319)
....+++++.|+++++.++||||++.+.+...-+..| .-...-+ . +..+ +..|-|. ...|.+....|.
T Consensus 13 ~~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ 91 (323)
T 1bxo_A 13 NDEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVT 91 (323)
T ss_dssp GGSCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEE
Confidence 3456889999999999999999999998854322222 1111111 0 0011 2344443 357888888999
Q ss_pred EcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 246 IEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 246 IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
+|+..++ ..|.+... ...|+||||.+
T Consensus 92 ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1bxo_A 92 VGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAF 126 (323)
T ss_dssp ETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred ECCEEECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence 9997665 45555542 35799999876
No 127
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=95.32 E-value=0.049 Score=53.45 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=62.1
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCcccc----cccee------eEeeccceeEEEeEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLI----DTRWA------GVAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~----~~~~~------g~a~Gvg~~~~~g~v~~~ 242 (319)
....+++++.|+ ++++.+++|||++.+.+.. .|. ..|+-...- .+.+. .+..|-|. ..|.+...
T Consensus 136 ~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~D 213 (453)
T 2bju_A 136 QNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKD 213 (453)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEE
Confidence 345789999998 9999999999999998843 332 123211111 11111 13455555 57888888
Q ss_pred EEEEcCEEEEeeEEEecCC----------CCceeechhh
Q psy17672 243 QVAIEKDFLTTSLSILEEQ----------PMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~~~f~Vl~~~----------~~d~ILG~D~ 271 (319)
.|.+|+..++..|.+.... ..|+||||.+
T Consensus 214 tv~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 214 LVTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EEEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEEEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 9999998777556555422 4799999875
No 128
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=95.13 E-value=0.091 Score=48.57 Aligned_cols=92 Identities=13% Similarity=0.259 Sum_probs=60.3
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccC-HHHH-HHcCCccccc----cce------eeEeeccceeEEEeEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCA-ERCNIMRLID----TRW------AGVAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a-~rlgl~~~~~----~~~------~g~a~Gvg~~~~~g~v~~~~ 243 (319)
...+++++.|+ ++++.++||||++.+.+. ..|. ..|+....-+ ..+ -.+..|-|. ..|.+....
T Consensus 13 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 90 (323)
T 3cms_A 13 DSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDT 90 (323)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEE
Confidence 45789999998 799999999999999884 3331 3332211111 111 113455554 578888889
Q ss_pred EEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 244 VAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
|.+|+..++ ..|.+... ...|+||||-+
T Consensus 91 v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 91 VTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EEETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EEECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 999997765 45555542 25799999864
No 129
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=95.12 E-value=0.17 Score=46.83 Aligned_cols=92 Identities=15% Similarity=0.301 Sum_probs=60.4
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH---HHcCCcccc----ccce------eeEeeccceeEEEeEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA---ERCNIMRLI----DTRW------AGVAKGVGVQQIIGRIHM 241 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a---~rlgl~~~~----~~~~------~g~a~Gvg~~~~~g~v~~ 241 (319)
...+++++.|+ ++++.+++|||++.+.+.. .|. ..|.....- ...+ -.+..|-|. ..|.+..
T Consensus 17 d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~ 94 (341)
T 3k1w_A 17 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQ 94 (341)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEE
T ss_pred CCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEE
Confidence 45789999998 6999999999999998843 321 123211111 1111 113455554 6888888
Q ss_pred EEEEEcCEEEEeeEEEecC--------CCCceeechhh
Q psy17672 242 VQVAIEKDFLTTSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 242 ~~i~IG~~~~~~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
..+.+|+..+...|.+... ...|+||||.+
T Consensus 95 D~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 95 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 8999999776555665542 23699999975
No 130
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=95.11 E-value=0.03 Score=43.37 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 4 EQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 4 ~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
+-|......+.|+++++.+++|+|..+.. +.|-+++|+.+||+|-++.
T Consensus 44 ~KL~~aYc~r~gv~~~sirFlfDG~rI~~-~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 44 QSVVDHMATHLGVSPSRILLLFGETELSP-TATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp HHHHHHHHHHHTSCGGGEEEEETTEECCT-TSCHHHHTCCSSCEEEEEE
T ss_pred HHHHHHHHhhcCCChhhEEEEECCcCCCC-CCCHhHcCCCCCCEEEEEE
Confidence 44556667888999999999999999987 6899999999999998875
No 131
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=95.11 E-value=0.066 Score=49.84 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=58.4
Q ss_pred ceEEEEEEEc--CEEEEEEEcCCccccccCHHHHHHcCCccccccceee----EeeccceeEEEeEEEEEEEEEcCEEEE
Q psy17672 179 VMLYINCKVN--GYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAG----VAKGVGVQQIIGRIHMVQVAIEKDFLT 252 (319)
Q Consensus 179 ~~l~v~v~In--g~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g----~a~Gvg~~~~~g~v~~~~i~IG~~~~~ 252 (319)
..+++++.|+ ++++.++||||++.+.+... ....- .......+ +..|-|. ..|.+....|.+|+..++
T Consensus 12 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~--s~Ss~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v~ 85 (340)
T 1wkr_A 12 VDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVK--TSTSSATSDKVSVTYGSGS--FSGTEYTDTVTLGSLTIP 85 (340)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCC--CTTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTEEEE
T ss_pred cEEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCC--cCCccccCceEEEEECCcE--EEEEEEEEEEEECCEEEc
Confidence 4688999999 99999999999999988532 11111 11111111 3456554 568888889999997655
Q ss_pred -eeEEEecC----CCCceeechhh
Q psy17672 253 -TSLSILEE----QPMDMLLGLDM 271 (319)
Q Consensus 253 -~~f~Vl~~----~~~d~ILG~D~ 271 (319)
..|.+... ...|+||||-+
T Consensus 86 ~~~fg~~~~~~~~~~~~GilGLg~ 109 (340)
T 1wkr_A 86 KQSIGVASRDSGFDGVDGILGVGP 109 (340)
T ss_dssp EEEEEEEEEEESCTTCSEEEECSC
T ss_pred ceEEEEEEccCCCcCCCcEEECCc
Confidence 45555442 25899999865
No 132
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=95.09 E-value=0.051 Score=50.52 Aligned_cols=92 Identities=14% Similarity=0.241 Sum_probs=60.2
Q ss_pred cceEEEEEEEcCEEEEEEEcCCccccccC-HHHH-HHc--CCcccccc---cee--e----EeeccceeEEEeEEEEEEE
Q psy17672 178 VVMLYINCKVNGYPVKAFVDSGAQTTIMS-AKCA-ERC--NIMRLIDT---RWA--G----VAKGVGVQQIIGRIHMVQV 244 (319)
Q Consensus 178 ~~~l~v~v~Ing~~v~aLVDTGA~~siIs-~~~a-~rl--gl~~~~~~---~~~--g----~a~Gvg~~~~~g~v~~~~i 244 (319)
...+++++.|+++++.++||||++.+.+. ..|. ..| .....-+. .++ + +..|-|. ..|.+....|
T Consensus 16 ~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv 93 (330)
T 1yg9_A 16 NTQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGS--AVGRGIEDSL 93 (330)
T ss_dssp CTTSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEE--EEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCce--EEEEEEEEEE
Confidence 34678999999999999999999999874 4442 244 22211111 111 1 2334443 3788888899
Q ss_pred EEcCEEEE-eeEEEecC-------CCCceeechhh
Q psy17672 245 AIEKDFLT-TSLSILEE-------QPMDMLLGLDM 271 (319)
Q Consensus 245 ~IG~~~~~-~~f~Vl~~-------~~~d~ILG~D~ 271 (319)
.+|+..++ ..|.+... ...|+||||.+
T Consensus 94 ~ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 94 TISQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp EETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred EECCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 99997765 45555442 24799999875
No 133
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=95.07 E-value=0.0038 Score=59.94 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
+++.|+...+++.|++..+++++|+|+.|.+ ++|-+++|+.+||+|.+...
T Consensus 51 ~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~-~~Tp~~l~med~d~i~~~~~ 101 (389)
T 4da1_A 51 PLRRLMEAFAKRQGKEMDSLRFLYDGIRIQA-DQAPEDLDMEDNDIIEAHRE 101 (389)
T ss_dssp ----------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcceEEEEECCEEcCC-CCCHHHcCCCCCCEeeeeec
Confidence 4667888889999999999999999999997 68999999999999999854
No 134
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=95.04 E-value=0.064 Score=49.73 Aligned_cols=94 Identities=15% Similarity=0.117 Sum_probs=60.8
Q ss_pred ccceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHc--CCcccccc---ce--ee----EeeccceeEEEeEEEEEEEE
Q psy17672 177 SVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERC--NIMRLIDT---RW--AG----VAKGVGVQQIIGRIHMVQVA 245 (319)
Q Consensus 177 ~~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rl--gl~~~~~~---~~--~g----~a~Gvg~~~~~g~v~~~~i~ 245 (319)
....+++++.|++++++++||||++.+.+...-+..| .-...-+. .+ .+ +..|-|. ...|.+....|.
T Consensus 13 ~~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ 91 (323)
T 1izd_A 13 NDEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGS-SASGDVYKDKVT 91 (323)
T ss_dssp GGCCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSC-EEEEEEEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCC-eEEEEEEEEEEE
Confidence 4556899999999999999999999998854322222 11111110 01 11 2334443 357888888999
Q ss_pred EcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 246 IEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 246 IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
+|+..++ ..|.+... ...|+||||.+
T Consensus 92 ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1izd_A 92 VGGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF 126 (323)
T ss_dssp ETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred ECCEEECceEEEEEEeccccccccCCCceEEecCc
Confidence 9997765 45555542 35799999876
No 135
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=94.99 E-value=0.069 Score=49.49 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=59.8
Q ss_pred ccceEEEEEEEcCEEEEEEEcCCccccccCHHHHHHc--CCcccc----------ccceeeEeeccceeEEEeEEEEEEE
Q psy17672 177 SVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERC--NIMRLI----------DTRWAGVAKGVGVQQIIGRIHMVQV 244 (319)
Q Consensus 177 ~~~~l~v~v~Ing~~v~aLVDTGA~~siIs~~~a~rl--gl~~~~----------~~~~~g~a~Gvg~~~~~g~v~~~~i 244 (319)
....+++++.|+++++.+++|||++.+.+...-+..| .-...- ...+. +..|-|. ...|.+....|
T Consensus 12 ~~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~-i~Yg~Gs-~~~G~~~~D~v 89 (325)
T 1ibq_A 12 NDEEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWD-ISYGDGS-SASGDVYRDTV 89 (325)
T ss_dssp TTSCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEE-EECSSSC-EEEEEEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEE-EEeCCCC-EEEEEEEEeEE
Confidence 3456889999999999999999999998843222222 111110 11111 3344442 35788888899
Q ss_pred EEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 245 AIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 245 ~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
.+|+..++ ..|.+... ...|+||||.+
T Consensus 90 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (325)
T 1ibq_A 90 TVGGVTTNKQAVEAASKISSEFVQDTANDGLLGLAF 125 (325)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred EECCEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence 99997665 45555542 36799999865
No 136
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=94.97 E-value=0.098 Score=49.06 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=61.0
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH--HHcCCccccc----ccee------eEeeccceeEEEeEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA--ERCNIMRLID----TRWA------GVAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a--~rlgl~~~~~----~~~~------g~a~Gvg~~~~~g~v~~~ 242 (319)
...+++++.|+ ++++.++||||++.+.+.. .|. ..|+-...-+ +.++ .+..|-|. ..|.+...
T Consensus 17 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 94 (361)
T 1mpp_A 17 LEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRD 94 (361)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEE
Confidence 45789999999 9999999999999998843 342 2454322211 1111 12345554 57888888
Q ss_pred EEEEcCEEEE-eeEEEecC-------------CCCceeechhh
Q psy17672 243 QVAIEKDFLT-TSLSILEE-------------QPMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~-~~f~Vl~~-------------~~~d~ILG~D~ 271 (319)
.|.+|+..++ ..|.+... ...|+||||.+
T Consensus 95 ~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 95 SITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 9999997665 34544431 24799999965
No 137
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=94.90 E-value=0.091 Score=46.62 Aligned_cols=92 Identities=16% Similarity=0.313 Sum_probs=59.0
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccC-HHHH--HHcCCccccc----cce------eeEeeccceeEEEeEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCA--ERCNIMRLID----TRW------AGVAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a--~rlgl~~~~~----~~~------~g~a~Gvg~~~~~g~v~~~ 242 (319)
...+++++.|+ ++++.++||||++.+.+. ..|. ..|+.....+ ..+ -.+..|-|. ..|.+...
T Consensus 12 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 89 (239)
T 1b5f_A 12 DTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQD 89 (239)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEE
Confidence 45689999998 899999999999999884 3342 2333211111 111 113455554 47888888
Q ss_pred EEEEcCEEEE-eeEEEec--------CCCCceeechhh
Q psy17672 243 QVAIEKDFLT-TSLSILE--------EQPMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~-~~f~Vl~--------~~~~d~ILG~D~ 271 (319)
.|.+|+..++ ..|.+.. ....|+||||-+
T Consensus 90 ~v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 90 SVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 9999997655 3343332 135799999864
No 138
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=94.47 E-value=0.11 Score=47.99 Aligned_cols=92 Identities=17% Similarity=0.332 Sum_probs=59.8
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccC-HHHHH-HcCCccccc----cce------eeEeeccceeEEEeEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCAE-RCNIMRLID----TRW------AGVAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a~-rlgl~~~~~----~~~------~g~a~Gvg~~~~~g~v~~~~ 243 (319)
...+++++.|+ ++++++++|||++.+.+. ..|.. .|.-...-+ ..+ -.+..|-| ...|.+....
T Consensus 12 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~ 89 (329)
T 1dpj_A 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDT 89 (329)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEE
Confidence 35689999998 899999999999999874 33321 122111111 111 11345555 4678888889
Q ss_pred EEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 244 VAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
|.+|+..++ ..|.+... ...|+||||-+
T Consensus 90 v~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 90 LSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EEETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EEECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 999997765 45555432 24799999875
No 139
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=94.46 E-value=0.14 Score=47.85 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=61.4
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCccccc-----------cceeeEeeccceeEEEeEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLID-----------TRWAGVAKGVGVQQIIGRIHM 241 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~~-----------~~~~g~a~Gvg~~~~~g~v~~ 241 (319)
....+++++.|+ ++++.++||||++.+.+.. .|. ..|+....-+ ..+. +..|-|. ..|.+..
T Consensus 21 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~-i~Yg~Gs--~~G~~~~ 97 (351)
T 1tzs_A 21 LDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFS-IQYGTGS--LSGIIGA 97 (351)
T ss_dssp SSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEE-EESSSCE--EEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEE-EEeCCCC--eEEEEEE
Confidence 345688999998 7999999999999998843 332 2343221111 1111 3455554 5688888
Q ss_pred EEEEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 242 VQVAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 242 ~~i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
..|.+|+..++ ..|.+... ...|+||||.+
T Consensus 98 D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 98 DQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp EEEEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred eEEEECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 89999997765 45655542 24699999864
No 140
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=94.43 E-value=0.22 Score=45.63 Aligned_cols=92 Identities=14% Similarity=0.244 Sum_probs=59.8
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCcc----cccccee------eEeeccceeEEEeEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMR----LIDTRWA------GVAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~----~~~~~~~------g~a~Gvg~~~~~g~v~~~~ 243 (319)
...+++++.|+ .+++++++|||++.+.+.. .|. ..|.-.. .....+. .+..|-|. ..|.+....
T Consensus 10 d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~ 87 (320)
T 4aa9_A 10 DSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDT 87 (320)
T ss_dssp CCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEE
Confidence 45689999998 7999999999999998843 221 1121111 1111111 13355554 578888889
Q ss_pred EEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 244 VAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
+.+|+..++ ..|.+... ...|+||||.+
T Consensus 88 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 88 VTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp EEETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred EEECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 999997766 45655542 23699999974
No 141
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=94.40 E-value=0.15 Score=47.22 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=61.0
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCHHHHHHcCC--cc---cccccee---e----EeeccceeEEEeEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSAKCAERCNI--MR---LIDTRWA---G----VAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~~a~rlgl--~~---~~~~~~~---g----~a~Gvg~~~~~g~v~~~ 242 (319)
....+++++.|+ ++++.++||||++.+.+...-+..|.. .. .....++ + +..|-|. ...|.+...
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D 91 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS-SSSGDVYTD 91 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSC-EEEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCCC-cEEEEEEEE
Confidence 345688999999 999999999999999986433333321 11 1111111 1 2344442 357888888
Q ss_pred EEEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 243 QVAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
.|.+|+..++ ..|.+... ...|+||||.+
T Consensus 92 ~v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 129 (329)
T 1oew_A 92 TVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF 129 (329)
T ss_dssp EEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEEECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence 9999997665 45555442 36799999865
No 142
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=94.40 E-value=0.24 Score=38.13 Aligned_cols=82 Identities=17% Similarity=0.209 Sum_probs=50.8
Q ss_pred EEEEEcCEEEEEEEcCCccccccCHHHHHHcCCccccccceee--EeeccceeEEEeEEEEEEEEEcCEEEEeeEEEecC
Q psy17672 183 INCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAG--VAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSILEE 260 (319)
Q Consensus 183 v~v~Ing~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g--~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~f~Vl~~ 260 (319)
+.++|.|..+++.-||||+.|+|...+.+. ....| ....+-+ +....+.-+.++|.|..+.+...--+
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~--------E~PI~~~~I~TIHG-~k~q~vYYl~fKv~GRKveaEVi~sp- 79 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED--------ERPIQTMLIKTIHG-EKQQDVYYLTFKVQGRKVEAEVLASP- 79 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT--------CCCSEEEEEECSSC-EEEEEEEEEEEEESSCEEEEEEEEES-
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc--------cccccceEEEEecC-ceeceEEEEEEEEcCeEEEEEEecCc-
Confidence 789999999999999999999999887422 12222 1222211 22334566789999977665443322
Q ss_pred CCCceee----chhhhhhcc
Q psy17672 261 QPMDMLL----GLDMLRRHE 276 (319)
Q Consensus 261 ~~~d~IL----G~D~L~~~~ 276 (319)
+|-+| -++|++...
T Consensus 80 --~dYvli~P~DiPW~~~~p 97 (107)
T 2jys_A 80 --YDYILLNPSDVPWLMKKP 97 (107)
T ss_dssp --SSSEEECTTTCHHHHSCC
T ss_pred --ccEEEEcCcCccccccCc
Confidence 33222 356776543
No 143
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=94.31 E-value=0.14 Score=47.44 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=60.2
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCHHHHHHcC---Cc---cccccce-------eeEeeccceeEEEeEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSAKCAERCN---IM---RLIDTRW-------AGVAKGVGVQQIIGRIHM 241 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~~a~rlg---l~---~~~~~~~-------~g~a~Gvg~~~~~g~v~~ 241 (319)
....+++++.|+ ++++.++||||++.+.+...-+..|. .. ......+ -.+..|-|. ...|.+..
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~ 91 (329)
T 3c9x_A 13 ADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGS-SSSGDVYT 91 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSC-EEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCC-cEEEEEEE
Confidence 345688999999 99999999999999988543222221 11 1001111 113344443 35788888
Q ss_pred EEEEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 242 VQVAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 242 ~~i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
..|.+|+..++ ..|.+... ...|+||||.+
T Consensus 92 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 130 (329)
T 3c9x_A 92 DKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF 130 (329)
T ss_dssp EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence 89999997665 35555442 36899999866
No 144
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=94.02 E-value=0.19 Score=46.36 Aligned_cols=93 Identities=12% Similarity=0.278 Sum_probs=60.6
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccC-HHHH-HHcCCccccc----ccee------eEeeccceeEEEeEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCA-ERCNIMRLID----TRWA------GVAKGVGVQQIIGRIHMV 242 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a-~rlgl~~~~~----~~~~------g~a~Gvg~~~~~g~v~~~ 242 (319)
....+++++.|+ ++++.++||||++.+.+. ..|. ..|+-...-+ ..++ .+..|-|. ..|.+...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D 87 (329)
T 1htr_B 10 MDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGS--LTGFFGYD 87 (329)
T ss_dssp TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEE
T ss_pred cCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCC--eEEEEEee
Confidence 445689999998 799999999999999884 3331 1232111111 1111 13355554 37888888
Q ss_pred EEEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 243 QVAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 243 ~i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
.|.+|+..++ ..|.+... ...|+||||.+
T Consensus 88 ~v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 88 TLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EEEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred eEEEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 9999998766 56666543 24789999864
No 145
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=93.86 E-value=0.05 Score=44.40 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHhhhCCCCC-------------------------------------CeEEEe--cCeeccCCcccccccC
Q psy17672 1 MDVEQFRLICQDECGIDAT-------------------------------------DMILLN--NGKHLLEDGSCLKQAG 41 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~-------------------------------------~q~Li~--~Gk~L~d~~~tL~~~g 41 (319)
+||.+++..|..+.||+.. .|+|-. .+..|.+ +.||.++|
T Consensus 32 ~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~-srtL~EQG 110 (128)
T 2kc2_A 32 KTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDH-GRTLREQG 110 (128)
T ss_dssp SSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECS-SSCHHHHT
T ss_pred cCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccC-CCcHHHcC
Confidence 4789999999999999854 455522 2467865 79999999
Q ss_pred CCCCcEEEEEcc
Q psy17672 42 VRDGDIILVAMP 53 (319)
Q Consensus 42 I~~~d~l~l~~~ 53 (319)
|.++++|.|..+
T Consensus 111 I~e~~tllLRrK 122 (128)
T 2kc2_A 111 VEEHETLLLRRK 122 (128)
T ss_dssp CCTTSEEEEEES
T ss_pred CCCCCEEEEEEE
Confidence 999999999865
No 146
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=93.49 E-value=0.21 Score=46.19 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=60.8
Q ss_pred ceEEEEEEEc--CEEEEEEEcCCccccccCHH---HHH--HcCCccccc----ccee--e----EeeccceeEEEeEEEE
Q psy17672 179 VMLYINCKVN--GYPVKAFVDSGAQTTIMSAK---CAE--RCNIMRLID----TRWA--G----VAKGVGVQQIIGRIHM 241 (319)
Q Consensus 179 ~~l~v~v~In--g~~v~aLVDTGA~~siIs~~---~a~--rlgl~~~~~----~~~~--g----~a~Gvg~~~~~g~v~~ 241 (319)
..+++++.|+ ++++.+++|||++.+.+... |.. .|.-...-+ ..++ + +..|-| ....|.+..
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~ 90 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGK 90 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEE
Confidence 4689999998 89999999999999998543 321 122111111 1111 1 223444 356888888
Q ss_pred EEEEEcCEEEE-eeEEEecC-CCCceeechhh
Q psy17672 242 VQVAIEKDFLT-TSLSILEE-QPMDMLLGLDM 271 (319)
Q Consensus 242 ~~i~IG~~~~~-~~f~Vl~~-~~~d~ILG~D~ 271 (319)
..|.+|+..++ ..|.+... ...|+||||.+
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 122 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGY 122 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecC
Confidence 89999998776 45665542 45799999965
No 147
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=93.44 E-value=0.18 Score=46.44 Aligned_cols=92 Identities=20% Similarity=0.326 Sum_probs=58.8
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHH-HHcCCccccc----ccee--e----EeeccceeEEEeEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCA-ERCNIMRLID----TRWA--G----VAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a-~rlgl~~~~~----~~~~--g----~a~Gvg~~~~~g~v~~~~ 243 (319)
...+++++.|+ ++++.++||||++.+.+.. .|. ..|+....-+ ..++ + +..|-|. ..|.+....
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 88 (324)
T 1am5_A 11 DTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGG--MRGILGQDT 88 (324)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCC--eEEEEEECc
Confidence 45788999998 7999999999999998853 331 1232111111 1111 1 2345554 378888889
Q ss_pred EEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 244 VAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
+.+|+..++ ..|.+... ...|+||||.+
T Consensus 89 v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 89 VSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp EESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eeECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 999986655 45555432 24799999865
No 148
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=93.32 E-value=0.56 Score=43.27 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=60.4
Q ss_pred ceEEEEEEEc--CEEEEEEEcCCccccccCHH---HH--------HHcCCcccc----cccee--e----EeeccceeEE
Q psy17672 179 VMLYINCKVN--GYPVKAFVDSGAQTTIMSAK---CA--------ERCNIMRLI----DTRWA--G----VAKGVGVQQI 235 (319)
Q Consensus 179 ~~l~v~v~In--g~~v~aLVDTGA~~siIs~~---~a--------~rlgl~~~~----~~~~~--g----~a~Gvg~~~~ 235 (319)
..+++++.|+ ++++.+++|||++.+.+... |. ..|.-...- ...++ + +..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~ 90 (342)
T 3pvk_A 12 VTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSS 90 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEE
T ss_pred cEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeE
Confidence 4689999998 89999999999999988432 31 123211111 11111 1 223433 246
Q ss_pred EeEEEEEEEEEcCEEEE-eeEEEecC-CCCceeechhh
Q psy17672 236 IGRIHMVQVAIEKDFLT-TSLSILEE-QPMDMLLGLDM 271 (319)
Q Consensus 236 ~g~v~~~~i~IG~~~~~-~~f~Vl~~-~~~d~ILG~D~ 271 (319)
.|.+....|.+|+..++ ..|.+... ...|+||||.+
T Consensus 91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 78888889999998766 46666553 36899999975
No 149
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=93.28 E-value=0.28 Score=48.29 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=60.7
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccC-HHHH--HHcCCccccc-----------cceeeEeeccceeEEEeEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCA--ERCNIMRLID-----------TRWAGVAKGVGVQQIIGRIH 240 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a--~rlgl~~~~~-----------~~~~g~a~Gvg~~~~~g~v~ 240 (319)
....+++++.|+ ++++.++||||++.+.+. ..|. ..|......+ ..+. +..|-|. ..|.+.
T Consensus 50 ~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~-i~Yg~Gs--~~G~~~ 126 (478)
T 1qdm_A 50 MNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAA-IQYGTGS--IAGYFS 126 (478)
T ss_dssp GGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEE-EEETTEE--EEEEEE
T ss_pred cCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEE-EEcCCCC--eEEEEE
Confidence 345789999998 899999999999999884 3442 2333211111 1121 3455554 578888
Q ss_pred EEEEEEcCEEEE-eeEEEecC--------CCCceeechhh
Q psy17672 241 MVQVAIEKDFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 241 ~~~i~IG~~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
...|.||+..++ ..|.+... ...|+||||.+
T Consensus 127 ~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 127 EDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEEEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEEEEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 889999997665 34544431 24699999865
No 150
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=93.20 E-value=0.31 Score=45.02 Aligned_cols=94 Identities=18% Similarity=0.325 Sum_probs=59.3
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccCHHHHHHc-CCccccc----cce--ee----EeeccceeEEEeEEEEEE
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMSAKCAERC-NIMRLID----TRW--AG----VAKGVGVQQIIGRIHMVQ 243 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~~a~rl-gl~~~~~----~~~--~g----~a~Gvg~~~~~g~v~~~~ 243 (319)
....+++++.|+ ++++.++||||++.+.+...-+..| .-...-+ +.+ .+ +..|-|. ...|.+....
T Consensus 13 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~~G~~~~D~ 91 (325)
T 2apr_A 13 NDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGS-SASGILAKDN 91 (325)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTSC-EEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCCC-CEEEEEEEEE
Confidence 345689999999 9999999999999998854322233 1111111 111 11 2334332 3578888889
Q ss_pred EEEcCEEEE-eeEEEecC-------CCCceeechhh
Q psy17672 244 VAIEKDFLT-TSLSILEE-------QPMDMLLGLDM 271 (319)
Q Consensus 244 i~IG~~~~~-~~f~Vl~~-------~~~d~ILG~D~ 271 (319)
|.+|+..++ ..|.+... ...|+||||.+
T Consensus 92 v~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~ 127 (325)
T 2apr_A 92 VNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGF 127 (325)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred EEECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence 999997665 34544431 23899999864
No 151
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=93.00 E-value=0.57 Score=43.39 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=59.9
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCHH---HH--------HHcCCccccc----ccee--e----EeeccceeE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSAK---CA--------ERCNIMRLID----TRWA--G----VAKGVGVQQ 234 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~---~a--------~rlgl~~~~~----~~~~--g----~a~Gvg~~~ 234 (319)
...+++++.|+ ++++.++||||++.+.+... |. ..|.-....+ ..++ + +..|-| ..
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~ 89 (342)
T 2qzx_A 11 AITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SY 89 (342)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CE
T ss_pred CeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-Ce
Confidence 35688999998 99999999999999998533 32 1232111111 1111 1 233444 23
Q ss_pred EEeEEEEEEEEEcCEEEE-eeEEEecC-CCCceeechhh
Q psy17672 235 IIGRIHMVQVAIEKDFLT-TSLSILEE-QPMDMLLGLDM 271 (319)
Q Consensus 235 ~~g~v~~~~i~IG~~~~~-~~f~Vl~~-~~~d~ILG~D~ 271 (319)
..|.+....|.+|+..++ ..|.+... ...|+||||.+
T Consensus 90 ~~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 2qzx_A 90 AKGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF 128 (342)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred EEEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence 568888889999997655 45555542 46899999875
No 152
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=92.96 E-value=0.47 Score=45.19 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=58.1
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCHH------------H----HHHcCCc-------cc------cccceeeE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSAK------------C----AERCNIM-------RL------IDTRWAGV 226 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~------------~----a~rlgl~-------~~------~~~~~~g~ 226 (319)
...+++++.|+ .+++.++||||++.+.+.-. | +..++-- .. ....+. +
T Consensus 20 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~~-~ 98 (403)
T 3aup_A 20 TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLM-S 98 (403)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEEE-E
T ss_pred CceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCcceeE-e
Confidence 45689999998 89999999999999987422 2 2222210 00 011121 3
Q ss_pred eeccceeEEEeEEEEEEEEEcC-----------EEEE-eeEEEecC--------CCCceeechhh
Q psy17672 227 AKGVGVQQIIGRIHMVQVAIEK-----------DFLT-TSLSILEE--------QPMDMLLGLDM 271 (319)
Q Consensus 227 a~Gvg~~~~~g~v~~~~i~IG~-----------~~~~-~~f~Vl~~--------~~~d~ILG~D~ 271 (319)
..|.......|.+-...|.||+ ..++ ..|.+... ...|+||||.+
T Consensus 99 ~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 163 (403)
T 3aup_A 99 TNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH 163 (403)
T ss_dssp EETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred ecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence 3443344667888888888887 4443 35555442 24799999865
No 153
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=92.93 E-value=0.15 Score=37.99 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEE--ecCeecc--CCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILL--NNGKHLL--EDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li--~~Gk~L~--d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|...|+. .+.+.....|+ |=.|.|. |.++||+++|+...++|+|..
T Consensus 29 tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 29 KLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp BHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 78999999987 67788888998 4478885 557899999999999999864
No 154
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=92.71 E-value=0.32 Score=45.07 Aligned_cols=93 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCHH---HHH--------HcCCccccc----ccee--e----EeeccceeE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSAK---CAE--------RCNIMRLID----TRWA--G----VAKGVGVQQ 234 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~~---~a~--------rlgl~~~~~----~~~~--g----~a~Gvg~~~ 234 (319)
...+++++.|+ ++++.++||||++.+.+... |.. .|.-....+ ..++ + +..|-|+ .
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~ 89 (334)
T 1j71_A 11 GPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLT-S 89 (334)
T ss_dssp SSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSC-E
T ss_pred CcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCC-E
Confidence 34688999998 99999999999999998532 321 232111111 1111 1 2344442 3
Q ss_pred EEeEEEEEEEEEcCEEEE-eeEEEecC-CCCceeechhh
Q psy17672 235 IIGRIHMVQVAIEKDFLT-TSLSILEE-QPMDMLLGLDM 271 (319)
Q Consensus 235 ~~g~v~~~~i~IG~~~~~-~~f~Vl~~-~~~d~ILG~D~ 271 (319)
..|.+....|.+|+..++ ..|.+... ...|+||||.+
T Consensus 90 ~~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~ 128 (334)
T 1j71_A 90 SQGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF 128 (334)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence 568888889999997655 45555542 46899999875
No 155
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=92.23 E-value=0.54 Score=44.24 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=55.3
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccCH-HHHHHcCCc--ccccccee------eEeeccceeEEEeEEEEEEEEE
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCAERCNIM--RLIDTRWA------GVAKGVGVQQIIGRIHMVQVAI 246 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a~rlgl~--~~~~~~~~------g~a~Gvg~~~~~g~v~~~~i~I 246 (319)
...+++++.|+ ++++.++||||++.+.+.. .|. .|.-. ......++ .+..|-|. ..|.+....|.+
T Consensus 12 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~-~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i 88 (383)
T 2ewy_A 12 GRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS-YIDTYFDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVTI 88 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT-TBSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEE
T ss_pred CCcEEEEEEecCCCceEEEEEecCCCceEEecCCCC-ccccCcccccCccceeCCceEEEEECCcE--EEEEEEEEEEEE
Confidence 34689999998 8999999999999998843 332 22211 11111111 13455554 368888888999
Q ss_pred cCE-EE--EeeEEEec--------CCCCceeechhh
Q psy17672 247 EKD-FL--TTSLSILE--------EQPMDMLLGLDM 271 (319)
Q Consensus 247 G~~-~~--~~~f~Vl~--------~~~~d~ILG~D~ 271 (319)
|+. .. ...|.... ....|+||||.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 89 PKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp TTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCCccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 862 22 22233221 135799999875
No 156
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=92.19 E-value=0.35 Score=46.91 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=55.8
Q ss_pred ceEEEEEEEc--CEEEEEEEcCCccccccCH-HHHHHcCCccccc----ccee--e----EeeccceeEEEeEEEEEEEE
Q psy17672 179 VMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCAERCNIMRLID----TRWA--G----VAKGVGVQQIIGRIHMVQVA 245 (319)
Q Consensus 179 ~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a~rlgl~~~~~----~~~~--g----~a~Gvg~~~~~g~v~~~~i~ 245 (319)
..+++++.|+ +++++++||||++.+.+.. .| |......+ ..+. + +..|-|. ..|.+....|.
T Consensus 74 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ 148 (455)
T 3lpj_A 74 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS 148 (455)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccCCcccCCCCCCcccCCccEEEEeCCeE--EEEEEEEEEEE
Confidence 4689999998 8999999999999998843 33 22221111 1111 1 3355554 37888888999
Q ss_pred EcC---EEEEeeEEEec--------CCCCceeechhh
Q psy17672 246 IEK---DFLTTSLSILE--------EQPMDMLLGLDM 271 (319)
Q Consensus 246 IG~---~~~~~~f~Vl~--------~~~~d~ILG~D~ 271 (319)
||+ ..+...|.+.. ....|+||||-+
T Consensus 149 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 185 (455)
T 3lpj_A 149 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185 (455)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence 984 23333333321 235799999985
No 157
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=91.77 E-value=0.34 Score=44.63 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=60.4
Q ss_pred EEEEcCEEE------EEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEE---
Q psy17672 184 NCKVNGYPV------KAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLT--- 252 (319)
Q Consensus 184 ~v~Ing~~v------~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~--- 252 (319)
.+.|||+.+ .++||||.+.+.++.+.++.+--. +.... ...|.-...+. .....+.+.+|+..+.
T Consensus 197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~--~~~~~--~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 272 (323)
T 3cms_A 197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQA--IGATQ--NQYGEFDIDCDNLSYMPTVVFEINGKMYPLTP 272 (323)
T ss_dssp EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHH--HTCEE--ETTTEEEECTTCTTTSCCEEEEETTEEEEECH
T ss_pred eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHH--hCCee--cCCCcEEEECCCCccCceEEEEECCEEEEECH
Confidence 467888764 799999999999999888765211 00000 00000000000 0112344555654443
Q ss_pred ----------eeEEEecC-CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 ----------TSLSILEE-QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 ----------~~f~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .....|||-.||+.+-++.|+.+++|-|..
T Consensus 273 ~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 321 (323)
T 3cms_A 273 SAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAK 321 (323)
T ss_dssp HHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEE
Confidence 22222222 234689999999999999999999998864
No 158
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=91.65 E-value=0.28 Score=45.46 Aligned_cols=102 Identities=9% Similarity=0.036 Sum_probs=61.2
Q ss_pred EEEcCEE-----EEEEEcCCccccccCHHHHHHcCCccccccceeeEeec--cc-eeEEE--eEEEEEEEEEcCEEEE--
Q psy17672 185 CKVNGYP-----VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKG--VG-VQQII--GRIHMVQVAIEKDFLT-- 252 (319)
Q Consensus 185 v~Ing~~-----v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~G--vg-~~~~~--g~v~~~~i~IG~~~~~-- 252 (319)
+.|+|+. ..++||||.+.+.++.+.++.+--. +.... ...| .- ...+. .....+.+.+|+..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~--~~~~~--~~~g~~~~~~~~C~~~~~~p~i~f~fgg~~~~l~ 277 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEA--IGCVV--EKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 277 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHH--HTCEE--EECSSCEEEEECGGGGGGSCCEEEEETTEEEEEC
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHH--hCCcc--cCCCceEEEEEECCCccccCcEEEEECCEEEEEC
Confidence 6788876 4799999999999999888766211 00000 0011 00 00000 0122345566665443
Q ss_pred -----------eeEEEec-CCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 -----------TSLSILE-EQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 -----------~~f~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+.. ..+...|||-.||+.+-.+.|+.+++|-|..
T Consensus 278 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~ 327 (330)
T 1yg9_A 278 SQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGR 327 (330)
T ss_dssp HHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEE
Confidence 2222222 1234589999999999999999999998865
No 159
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=91.47 E-value=0.43 Score=45.30 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=55.9
Q ss_pred cceEEEEEEEc--CEEEEEEEcCCccccccC-HHHHHHcCC-ccccccce--ee----EeeccceeEEEeEEEEEEEEEc
Q psy17672 178 VVMLYINCKVN--GYPVKAFVDSGAQTTIMS-AKCAERCNI-MRLIDTRW--AG----VAKGVGVQQIIGRIHMVQVAIE 247 (319)
Q Consensus 178 ~~~l~v~v~In--g~~v~aLVDTGA~~siIs-~~~a~rlgl-~~~~~~~~--~g----~a~Gvg~~~~~g~v~~~~i~IG 247 (319)
...+++++.|+ +++++++||||++.+.+. ..|+...+. .......+ .+ +..|-|. ..|.+....|.||
T Consensus 27 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ig 104 (402)
T 3vf3_A 27 GQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVSIP 104 (402)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEECT
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCCCcccCCcCcccCcccccCCCEEEEEECcEE--EEEEEEEEEEEEC
Confidence 35799999998 999999999999999884 334221110 00001111 11 3345554 4788888899998
Q ss_pred C-E--EEEeeEEEec--------CCCCceeechhh
Q psy17672 248 K-D--FLTTSLSILE--------EQPMDMLLGLDM 271 (319)
Q Consensus 248 ~-~--~~~~~f~Vl~--------~~~~d~ILG~D~ 271 (319)
+ . .....|.+.. ....|+||||.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 139 (402)
T 3vf3_A 105 HGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 139 (402)
T ss_dssp TSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence 4 2 2222232221 235799999985
No 160
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=91.06 E-value=0.56 Score=35.86 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=26.3
Q ss_pred ccceEEEEEEEc--CEEEEEEEcCCccccccC
Q psy17672 177 SVVMLYINCKVN--GYPVKAFVDSGAQTTIMS 206 (319)
Q Consensus 177 ~~~~l~v~v~In--g~~v~aLVDTGA~~siIs 206 (319)
....+++++.|+ ++++.++||||++...+.
T Consensus 11 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~ 42 (97)
T 1lya_A 11 MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVP 42 (97)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred CCCeEEEEEEECCCCeEEEEEEeCCCCceEEe
Confidence 345789999998 999999999999999874
No 161
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=90.78 E-value=0.46 Score=41.68 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=59.2
Q ss_pred EEEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEE---
Q psy17672 184 NCKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLT--- 252 (319)
Q Consensus 184 ~v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~--- 252 (319)
.+.|+|+. ..++||||.+.+.++.+.++.+--. +..... ..|.-...|. .....+.+.+|+..+.
T Consensus 107 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~--~~~~~~--~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~ 182 (241)
T 1lya_B 107 QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKA--IGAVPL--IQGEYMIPCEKVSTLPAITLKLGGKGYKLSP 182 (241)
T ss_dssp EEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHH--HTCEEE--ETTEEEEEGGGGGGSCCEEEEETTEEEEECT
T ss_pred EEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHH--hCCeec--cCCcEEEECCCCccCCeEEEEECCEEEEECH
Confidence 45677765 4899999999999999888766211 011000 0010000000 0012233444543332
Q ss_pred --------------eeEEEecC-----CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 --------------TSLSILEE-----QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 --------------~~f~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .....|||-.||+.+-++.|+.++++-|..
T Consensus 183 ~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 239 (241)
T 1lya_B 183 EDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAE 239 (241)
T ss_dssp TTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEECCCCEEEEEE
Confidence 22212221 234689999999999999999999998764
No 162
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=90.62 E-value=0.9 Score=44.30 Aligned_cols=106 Identities=9% Similarity=0.077 Sum_probs=64.4
Q ss_pred EEEEEEcCE---EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE-eEEEEEEEEEcCEEEEee---
Q psy17672 182 YINCKVNGY---PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII-GRIHMVQVAIEKDFLTTS--- 254 (319)
Q Consensus 182 ~v~v~Ing~---~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~-g~v~~~~i~IG~~~~~~~--- 254 (319)
.+.+.|+|. ...++||||.+.+.++.+.+..+--.. ...+. ...|.-...+. .......+.+|+..+.++
T Consensus 319 ~l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i--~a~~~-~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~ 395 (451)
T 3qvc_A 319 DLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESA--SVFKV-PFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQ 395 (451)
T ss_dssp EEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTT--TCEEC-TTSSCEEEETTCTTCCCEEEEETTEEEEECHHH
T ss_pred EEEEEECCccCCCceEEEeCCCccccCCHHHHHHHHHHc--CCeec-CCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHH
Confidence 333678874 578999999999999999988773211 00000 00011011111 112344566676554432
Q ss_pred --------------EEEecCC--CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 --------------LSILEEQ--PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 --------------f~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+.... ....|||..||+.+-.+.|+.++++-|..
T Consensus 396 yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ 447 (451)
T 3qvc_A 396 YLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFAL 447 (451)
T ss_dssp HEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred heeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 1122222 34589999999999999999999998865
No 163
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=90.49 E-value=0.38 Score=44.60 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=60.8
Q ss_pred EEEEEcC-EEE----EEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEEe--
Q psy17672 183 INCKVNG-YPV----KAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLTT-- 253 (319)
Q Consensus 183 v~v~Ing-~~v----~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~~-- 253 (319)
..+.|+| +.+ .++||||.+.+.++.+.++.+. . .....+. ...|.-...+. .....+.+.+|+..+.+
T Consensus 193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~-~-~~~a~~~-~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~ 269 (340)
T 1wkr_A 193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYK-K-ATGAVAD-NNTGLLRLTTAQYANLQSLFFTIGGQTFELTA 269 (340)
T ss_dssp EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHH-H-HHTCEEC-TTTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHH-H-hhCCEEc-CCCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence 4577888 654 7999999999999999888761 1 1111110 00010000000 00112334455543321
Q ss_pred --------------------eEEEec--C---CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 254 --------------------SLSILE--E---QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 254 --------------------~f~Vl~--~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-+.+.+ . .+...|||-.||+.+-.+.|+.+++|-|..
T Consensus 270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 331 (340)
T 1wkr_A 270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLAT 331 (340)
T ss_dssp GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEe
Confidence 111222 1 123479999999999999999999998876
No 164
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=90.30 E-value=0.31 Score=44.89 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=60.6
Q ss_pred EEEEcCEE-----EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEE----
Q psy17672 184 NCKVNGYP-----VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLT---- 252 (319)
Q Consensus 184 ~v~Ing~~-----v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~---- 252 (319)
.+.|||+. ..++||||.+.+.++.+.++.+--. +... ...|.-...+. .....+.+.+|+..+.
T Consensus 196 ~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~--~~~~---~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~ 270 (324)
T 1am5_A 196 GITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKD--IGAS---ENQGEMMGNCASVQSLPDITFTINGVKQPLPPS 270 (324)
T ss_dssp EEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHH--HTCE---ECCCCEECCTTSSSSSCCEEEEETTEEEEECHH
T ss_pred EEEECCceeeccCceEEEecCCccEECCHHHHHHHHHH--hCCc---ccCCcEEEeCCCcccCCcEEEEECCEEEEECHH
Confidence 45688876 5799999999999998877665211 0000 00110000000 0112344555654443
Q ss_pred ---------eeEEEecC-----CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 ---------TSLSILEE-----QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 ---------~~f~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .....|||-.||+.+-++.|+.+++|-|..
T Consensus 271 ~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 322 (324)
T 1am5_A 271 AYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAP 322 (324)
T ss_dssp HHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred HhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEE
Confidence 32223221 134689999999999999999999998864
No 165
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=90.17 E-value=0.79 Score=43.35 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=54.9
Q ss_pred ceEEEEEEEc--CEEEEEEEcCCccccccCH-HHHHHcC-Ccccccccee------eEeeccceeEEEeEEEEEEEEEc-
Q psy17672 179 VMLYINCKVN--GYPVKAFVDSGAQTTIMSA-KCAERCN-IMRLIDTRWA------GVAKGVGVQQIIGRIHMVQVAIE- 247 (319)
Q Consensus 179 ~~l~v~v~In--g~~v~aLVDTGA~~siIs~-~~a~rlg-l~~~~~~~~~------g~a~Gvg~~~~~g~v~~~~i~IG- 247 (319)
..+++++.|+ ++++.++||||++.+.+.. .|....+ ........++ .+..|-|.. .|.+....|.+|
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~--~G~~~~Dtv~ig~ 98 (395)
T 2qp8_A 21 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGKW--EGELGTDLVSIPH 98 (395)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCEE--EEEEEEEEEECTT
T ss_pred ceEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcEE--EEEEEeEEEEECC
Confidence 4589999999 9999999999999998843 3321111 1111111111 133455543 688888889998
Q ss_pred CE--EEEeeEEEec--------CCCCceeechhh
Q psy17672 248 KD--FLTTSLSILE--------EQPMDMLLGLDM 271 (319)
Q Consensus 248 ~~--~~~~~f~Vl~--------~~~~d~ILG~D~ 271 (319)
+. .+...|.+.. ....|+||||.+
T Consensus 99 g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~ 132 (395)
T 2qp8_A 99 GPNVTVRANIAAITESDKFFINGSNWEGILGLAY 132 (395)
T ss_dssp SCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence 33 2223333221 135799999876
No 166
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=89.99 E-value=0.52 Score=41.49 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHhhhCCCCC-CeEEE--e-c--CeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDAT-DMILL--N-N--GKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~-~q~Li--~-~--Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+|+..+...++||.+ ..||. | . ...|.|++.||++++|.+|..|+|-.+.
T Consensus 150 ~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 150 DTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp SBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred chHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 4889999999999999997 68885 3 2 2345665679999999999999998763
No 167
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=89.80 E-value=0.53 Score=36.96 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=43.7
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEE--ecCeecc--CCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILL--NNGKHLL--EDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li--~~Gk~L~--d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
||.+|.+.|....+.+.....|+ |--|.|. |.++||+++|+....+|++...
T Consensus 35 tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 35 PLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp BHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 79999999999888887888887 4577786 5578999999999988888754
No 168
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=89.80 E-value=0.67 Score=43.84 Aligned_cols=104 Identities=13% Similarity=0.129 Sum_probs=59.4
Q ss_pred EEEEcCE---EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE-eEEEEEEEEEcCEEEE-------
Q psy17672 184 NCKVNGY---PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII-GRIHMVQVAIEKDFLT------- 252 (319)
Q Consensus 184 ~v~Ing~---~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~-g~v~~~~i~IG~~~~~------- 252 (319)
.+.|||+ ...++||||.+.+.++.+.++.+--. +...+. ...|.-...|. .....+.+.+|+..+.
T Consensus 246 ~i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~--~~~~~~-~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi 322 (375)
T 1miq_A 246 DVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFAN--LNVIKV-PFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322 (375)
T ss_dssp EEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHH--HTCEEC-TTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEECCEEcccceEEecCCCccEEcCHHHHHHHHHH--hCCccc-CCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence 3778996 46899999999999999888765211 000000 00010000000 0111223344443222
Q ss_pred ----------eeEEEecCC--CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 ----------TSLSILEEQ--PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 ----------~~f~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+.... ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~ 372 (375)
T 1miq_A 323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAI 372 (375)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEE
Confidence 222222222 24689999999999999999999998864
No 169
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=89.71 E-value=1.2 Score=41.04 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=58.8
Q ss_pred EEEEcCEEE----EEEEcCCccccccCHHHHHHcCCccccccceeeEeec-cce-eEEEeEEEEEEEEE-cCEEEE----
Q psy17672 184 NCKVNGYPV----KAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKG-VGV-QQIIGRIHMVQVAI-EKDFLT---- 252 (319)
Q Consensus 184 ~v~Ing~~v----~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~G-vg~-~~~~g~v~~~~i~I-G~~~~~---- 252 (319)
.+.|+|+.+ .++||||.+.+.++.+.++.+--. +...+. ..+ .-. ..+. ....+.+.+ |+..+.
T Consensus 201 ~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~--~~~~~~--~~~~~~~~~~C~-~~p~i~f~f~~g~~~~i~~~ 275 (334)
T 1j71_A 201 SINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARI--VGATWD--SRNEIYRLPSCD-LSGDAVFNFDQGVKITVPLS 275 (334)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEE--TTTTEEECSSSC-CCSEEEEEESTTCEEEEEGG
T ss_pred EEEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHH--cCCccc--CCCceEEEEcCC-CCCceEEEEcCCcEEEECHH
Confidence 366788754 689999999999999888766211 000000 000 000 0000 012234455 343322
Q ss_pred -----------eeEEEecCCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 -----------TSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 -----------~~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... -..|||-.||+.+-.+.|+.++++-|..
T Consensus 276 ~y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (334)
T 1j71_A 276 ELILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQ 322 (334)
T ss_dssp GGEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeecCCCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEe
Confidence 22222221 2589999999999999999999999976
No 170
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=89.53 E-value=0.46 Score=43.84 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=60.4
Q ss_pred EEEcCEEE----EEEEcCCccccccCHHHHHHcCCccccccceeeE--eeccceeEEE-eEEEEEEEEEc-CEEEEe--e
Q psy17672 185 CKVNGYPV----KAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGV--AKGVGVQQII-GRIHMVQVAIE-KDFLTT--S 254 (319)
Q Consensus 185 v~Ing~~v----~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~--a~Gvg~~~~~-g~v~~~~i~IG-~~~~~~--~ 254 (319)
+.|||+.+ .++||||.+.+.++.+.++.+--. +...+... ..|.-...+. .....+.+.++ +..+.+ .
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~--~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~ 281 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADK--AGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNT 281 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHH--HTCEEEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGG
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHHH--cCCEEccccccCceEEEecCCCCCCcEEEEECCCCEEEECHH
Confidence 56788764 699999999999999988776311 01111100 0110000000 01233456664 433322 1
Q ss_pred EEEec-CC---------CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 LSILE-EQ---------PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 f~Vl~-~~---------~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-++++ .. .-..|||..||+.+-.+.|+.++++-|..
T Consensus 282 ~~~~~~~~~~C~~~i~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 327 (339)
T 3fv3_A 282 EYVYQNGDGTCLWGIQPSDDTILGDNFLRHAYLLYNLDANTISIAQ 327 (339)
T ss_dssp GGEEECSSSCEEESEEECSSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeeCCCCeEEEEEEeCCcEEeChHHHhCEEEEEECCCCEEEEEe
Confidence 11111 00 12479999999999999999999999976
No 171
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=89.51 E-value=0.91 Score=41.76 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=58.4
Q ss_pred EEEEcCEEE-----EEEEcCCccccccCHHHHHHc----CCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEE--
Q psy17672 184 NCKVNGYPV-----KAFVDSGAQTTIMSAKCAERC----NIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLT-- 252 (319)
Q Consensus 184 ~v~Ing~~v-----~aLVDTGA~~siIs~~~a~rl----gl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~-- 252 (319)
.+.|+|..+ .++||||.+.+.++.+.++.+ +.....+..+. ..- .. ......+.+.+++..+.
T Consensus 200 ~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~--~~C-~~---~~~~P~i~f~f~g~~~~i~ 273 (329)
T 1dpj_A 200 GIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYT--LDC-NT---RDNLPDLIFNFNGYNFTIG 273 (329)
T ss_dssp EEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEE--ECG-GG---GGGCCCEEEEETTEEEEEC
T ss_pred eEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEE--EEC-CC---CCcCCcEEEEECCEEEEEC
Confidence 366888754 699999999999999888765 21100000010 000 00 00011223334433222
Q ss_pred -----------eeEEEecC-----CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 -----------TSLSILEE-----QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 -----------~~f~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .+...|||-.||+.+-.+.|+.+++|-|..
T Consensus 274 ~~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 327 (329)
T 1dpj_A 274 PYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAK 327 (329)
T ss_dssp TTTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEE
Confidence 22222221 234689999999999999999999998864
No 172
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=89.42 E-value=0.56 Score=43.78 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=58.5
Q ss_pred EEEcCEEE------EEE-EcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEE-EEEEEEE--c-----
Q psy17672 185 CKVNGYPV------KAF-VDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRI-HMVQVAI--E----- 247 (319)
Q Consensus 185 v~Ing~~v------~aL-VDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v-~~~~i~I--G----- 247 (319)
+.|+|+.+ .++ ||||.+.+.++.+.++.+--. +...+. ...|.-...+. ... ..+.+.+ |
T Consensus 218 i~v~~~~~~~~~~~~ai~iDSGTt~~~lP~~~~~~l~~~--~~~~~~-~~~g~~~~~C~~~~~~~p~i~f~f~~g~~~~~ 294 (361)
T 1mpp_A 218 VKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKVVKA--ALPDAT-ESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSD 294 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEETTCCSEEEEHHHHHHHHHH--HCTTCE-EETTEEEEEHHHHTTCCCEEEEEEECTTCSSC
T ss_pred EEECCeeeccCCCCEEEEECCCCCceeCCHHHHHHHHHH--hCCccc-CCCCcEEEECCCcccCCCcEEEEEEcCCcCCC
Confidence 56888754 689 999999999999888765211 000000 00110000000 001 2233344 3
Q ss_pred CEEEE----------------eeEEEecCCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 248 KDFLT----------------TSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 248 ~~~~~----------------~~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+..+. |-+.+........|||..||+.+-.+.|+.+++|-|..
T Consensus 295 g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 353 (361)
T 1mpp_A 295 TIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353 (361)
T ss_dssp EEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred CeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccEEEEEECCCCEEEEEE
Confidence 22221 22222322234689999999999999999999998876
No 173
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=89.36 E-value=0.78 Score=40.74 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHhhhCCCCC-CeEEEe-c----CeeccCCcccccccCCCCCcEEEEEccC
Q psy17672 1 MDVEQFRLICQDECGIDAT-DMILLN-N----GKHLLEDGSCLKQAGVRDGDIILVAMPG 54 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~-~q~Li~-~----Gk~L~d~~~tL~~~gI~~~d~l~l~~~~ 54 (319)
.||.+|+..+-..++||.+ .-||.. + ...|.|.+.||+++++.+|..|+|-.+.
T Consensus 162 ~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 162 DTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp CBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred CcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 3899999999999999997 689963 3 2356665689999999999999998764
No 174
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=89.26 E-value=0.84 Score=42.02 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=59.7
Q ss_pred EEEcCE-----EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEee-----
Q psy17672 185 CKVNGY-----PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTS----- 254 (319)
Q Consensus 185 v~Ing~-----~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~----- 254 (319)
+.|+|+ ...++||||.+.+.++.+.++.+--... ...+. ...|.-...+......+.+.+|+..+.+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~ 274 (325)
T 1ibq_A 197 YSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQVS-GAQES-YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYIN 274 (325)
T ss_dssp EEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTST-TCBCC-SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhCC-CceEc-CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhc
Confidence 456764 4689999999999999999887632110 00000 00110011111112234455555443321
Q ss_pred ------------EEEecCC-CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 ------------LSILEEQ-PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 ------------f~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+.... .-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 275 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 323 (325)
T 1ibq_A 275 YAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAA 323 (325)
T ss_dssp EEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeee
Confidence 1111111 23479999999999999999999998764
No 175
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=89.05 E-value=0.78 Score=41.91 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=59.8
Q ss_pred EEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEEe---
Q psy17672 185 CKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLTT--- 253 (319)
Q Consensus 185 v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~~--- 253 (319)
+.|+|+. ..++||||.+.+.++.+.++++--. +..... ..|.-...+. .......+.+|+..+.+
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~--~~~~~~--~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~ 270 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMA--IGATEN--RYGEFDVNCGNLRSMPTVVFEINGRDYPLSPS 270 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHH--TTCEEC--TTSCEEECGGGGGGCCCEEEEETTEEEEECHH
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHH--hCCccc--CCCcEEEeCCCCCcCceEEEEECCEEEEECHH
Confidence 5678875 4799999999999999887765311 000000 0010000000 01123445556544432
Q ss_pred ----------eEEEec-CCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 254 ----------SLSILE-EQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 254 ----------~f~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-+.+.. ..+...|||..||+.+-.+.|+.++++-|..
T Consensus 271 ~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 318 (320)
T 4aa9_A 271 AYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAK 318 (320)
T ss_dssp HHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEe
Confidence 222222 1234589999999999999999999998764
No 176
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=88.96 E-value=0.86 Score=41.90 Aligned_cols=104 Identities=12% Similarity=0.024 Sum_probs=60.1
Q ss_pred EEEcC---EEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEee-------
Q psy17672 185 CKVNG---YPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTS------- 254 (319)
Q Consensus 185 v~Ing---~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~------- 254 (319)
+.|+| ....++||||.+.+.++.+.++++--... ...+. ...|.-...+......+.+.+|+..+.+.
T Consensus 198 i~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~ 275 (323)
T 1bxo_A 198 YTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVS-GAQQD-SNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYG 275 (323)
T ss_dssp EEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTST-TCEEE-TTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEE
T ss_pred EEECCccCCCceEEEeCCCCceeCCHHHHHHHHHhCC-CceEc-CcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEe
Confidence 45666 34689999999999999999887632110 00000 00010000111112234556666544321
Q ss_pred ---------EEEecC-CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 ---------LSILEE-QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 ---------f~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+... ..-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 276 ~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~ 321 (323)
T 1bxo_A 276 PSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAP 321 (323)
T ss_dssp ECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ccCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEec
Confidence 111111 123589999999999999999999998764
No 177
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=88.76 E-value=0.71 Score=42.72 Aligned_cols=103 Identities=14% Similarity=0.209 Sum_probs=59.9
Q ss_pred EEEEcCEEE----EEEEcCCccccccCHHHHHHcCCccccccceeeEeeccc---eeEEEeEEEEEEEEE-cCEEEEee-
Q psy17672 184 NCKVNGYPV----KAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVG---VQQIIGRIHMVQVAI-EKDFLTTS- 254 (319)
Q Consensus 184 ~v~Ing~~v----~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg---~~~~~g~v~~~~i~I-G~~~~~~~- 254 (319)
.+.|||+.+ .++||||.+.+.++.+.++.+--. +...+. .....+ ...+ .....+.+.+ |+..+.+.
T Consensus 201 ~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~--~~~~~~-~~~~~~~~~~~~C-~~~p~i~f~f~~g~~~~i~~ 276 (342)
T 2qzx_A 201 SVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYA--IGAQMK-FDSAGNKVYVADC-KTSGTIDFQFGNNLKISVPV 276 (342)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEE-ECTTSCEEEEECT-TCCCEEEEEETTTEEEEEEG
T ss_pred EEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHH--hCCeee-eccCCCcEEEEEC-CCCCcEEEEECCCcEEEEcH
Confidence 466788754 689999999999999988776211 111100 000001 0000 0022345555 45433321
Q ss_pred -EEEec-----C-----------CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 -LSILE-----E-----------QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 -f~Vl~-----~-----------~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-++++ . ..-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 277 ~~~~~~~~~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 2qzx_A 277 SEFLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAYVVYNLDDKKISMAP 329 (342)
T ss_dssp GGGEECCBCTTSCBCSSEEESEEECSSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHhcccccccCCCCCCccEEEEecCCCcEeChHhhhcEEEEEECCCCEEEEEe
Confidence 11111 0 012479999999999999999999999976
No 178
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=88.60 E-value=0.56 Score=43.22 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=59.9
Q ss_pred EEEEcCEE-------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEE--
Q psy17672 184 NCKVNGYP-------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLT-- 252 (319)
Q Consensus 184 ~v~Ing~~-------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~-- 252 (319)
.+.|||+. ..++||||.+.+.++.+.++.+--. +..... ..|.-...+. .....+.+.+|+..+.
T Consensus 197 ~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~--~~~~~~--~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~ 272 (329)
T 1htr_B 197 EFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQA--TGAQED--EYGQFLVNCNSIQNLPSLTFIINGVEFPLP 272 (329)
T ss_dssp EEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHH--HTCEEC--TTSCEEECGGGGGGSCCEEEEETTEEEEEC
T ss_pred EEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHH--hCCeec--CCCeEEEeCCCcccCCcEEEEECCEEEEEC
Confidence 46688875 4799999999999999888765211 000000 0010000000 0112234555554432
Q ss_pred -----------eeEEEecC-----CCC-ceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 -----------TSLSILEE-----QPM-DMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 -----------~~f~Vl~~-----~~~-d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .+. ..|||-.||+.+-.+.|+.+++|-|..
T Consensus 273 ~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 327 (329)
T 1htr_B 273 PSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFAT 327 (329)
T ss_dssp HHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEe
Confidence 32222221 123 689999999999999999999998864
No 179
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=88.40 E-value=0.53 Score=43.38 Aligned_cols=98 Identities=10% Similarity=0.057 Sum_probs=56.0
Q ss_pred EEEcCE----EEEEEEcCCccccccCHH----HHHHcCCccccccceeeEeeccceeEEEeE-EEEEEEEEcCEEEE---
Q psy17672 185 CKVNGY----PVKAFVDSGAQTTIMSAK----CAERCNIMRLIDTRWAGVAKGVGVQQIIGR-IHMVQVAIEKDFLT--- 252 (319)
Q Consensus 185 v~Ing~----~v~aLVDTGA~~siIs~~----~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~-v~~~~i~IG~~~~~--- 252 (319)
+.|+|. ...++||||.+.+.++.+ +++.++-.......+. ..+.-. ...+.+.+++..+.
T Consensus 202 i~vg~~~~~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~--------~~C~~~~~p~i~f~f~g~~~~ip~ 273 (325)
T 2apr_A 202 ATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYT--------ISCDTSAFKPLVFSINGASFQVSP 273 (325)
T ss_dssp EEETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEE--------ECSCGGGCCCEEEEETTEEEEECG
T ss_pred EEECCEecCCCceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEE--------EECCCCCCCcEEEEECCEEEEECH
Confidence 456662 358999999999999999 6666643210000000 000000 11223333332111
Q ss_pred -----------eeEEEecCCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 -----------TSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 -----------~~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+.....-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 274 ~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (325)
T 2apr_A 274 DSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322 (325)
T ss_dssp GGGEEEEETTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHEEEcCCCCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEe
Confidence 22222221234589999999999999999999998865
No 180
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=88.08 E-value=1.7 Score=40.00 Aligned_cols=101 Identities=18% Similarity=0.129 Sum_probs=60.0
Q ss_pred EEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEEee--
Q psy17672 185 CKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLTTS-- 254 (319)
Q Consensus 185 v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~~~-- 254 (319)
+.|+|.. ..++||||.+.+.++.+.++++--. +...+. ..| -...+. .....+.+.+|+..+.+.
T Consensus 208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~--~~~~~~--~~g-~~~~C~~~~~~p~i~f~f~g~~~~l~~~ 282 (341)
T 3k1w_A 208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEA--LGAKKR--LFD-YVVKCNEGPTLPDISFHLGGKEYTLTSA 282 (341)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHH--HTCEEC--SSC-EEEEGGGGGGCCCEEEEETTEEEEECHH
T ss_pred EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHH--cCCeec--CCC-eEEeCCCCCcCCcEEEEECCEEEEECHH
Confidence 4678874 4799999999999999888765211 000000 001 000000 011234455666544321
Q ss_pred ---------------EEEec-----CCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 ---------------LSILE-----EQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 ---------------f~Vl~-----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+.. ......|||..||+.+-.+.|+.++++-|..
T Consensus 283 ~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 338 (341)
T 3k1w_A 283 DYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFAL 338 (341)
T ss_dssp HHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEE
Confidence 11111 1134589999999999999999999998865
No 181
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=88.07 E-value=1.3 Score=43.31 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=61.0
Q ss_pred EEEcCE---EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeec-cceeEEE-eEEEEEEEEEcCEEEE-------
Q psy17672 185 CKVNGY---PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKG-VGVQQII-GRIHMVQVAIEKDFLT------- 252 (319)
Q Consensus 185 v~Ing~---~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~G-vg~~~~~-g~v~~~~i~IG~~~~~------- 252 (319)
+.|+|+ ...++||||.+.+.++.+.++.+--... ... ...| .-...|. .....+.+.+|+..+.
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~i~--~~~--~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi 398 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQNLD--VIK--VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYL 398 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTTSS--CEE--CTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHE
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHHhC--Ccc--cCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhE
Confidence 677883 3689999999999999999988742211 000 0011 0000000 0122334555554332
Q ss_pred ----------eeEEEecCC--CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 ----------TSLSILEEQ--PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 ----------~~f~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+.+.. ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 399 ~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~ 448 (453)
T 2bju_A 399 QHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIAL 448 (453)
T ss_dssp EECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred eecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 222222221 23689999999999999999999998865
No 182
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=87.82 E-value=0.76 Score=42.32 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=60.0
Q ss_pred EEEcC----EEEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEee------
Q psy17672 185 CKVNG----YPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTS------ 254 (319)
Q Consensus 185 v~Ing----~~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~~------ 254 (319)
+.|+| ....++||||.+.+.++.+.++.+--... ...+. ...|.-...+......+.+.+|+..+.+.
T Consensus 198 i~v~~~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~-ga~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~ 275 (323)
T 1izd_A 198 YSIGSDSSSDSITGIADTGTTLLLLDDSIVDAYYEQVN-GASYD-SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISF 275 (323)
T ss_dssp EEETTEEECCCEEEEECTTCCSEEECHHHHHHHHTTST-TCEEE-TTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCcccCCCceEEEeCCCcceeCCHHHHHHHHHhCC-CcEEc-CcCCEEEEECCCCCceEEEEECCEEEecCHHHeEE
Confidence 34555 34689999999999999999887632110 00000 00010011111112334556666544321
Q ss_pred ---------EEEecCC-CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 ---------LSILEEQ-PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 ---------f~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+.... ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 276 ~~~~~~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~ 321 (323)
T 1izd_A 276 ADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAA 321 (323)
T ss_dssp EECSTTEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ecCCCCeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEee
Confidence 1122211 24589999999999999999999998754
No 183
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=87.75 E-value=0.52 Score=43.52 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=59.3
Q ss_pred EEEEcCEE-----EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccc----eeEEEeEEEEEEEEEc-CEEEEe
Q psy17672 184 NCKVNGYP-----VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVG----VQQIIGRIHMVQVAIE-KDFLTT 253 (319)
Q Consensus 184 ~v~Ing~~-----v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg----~~~~~g~v~~~~i~IG-~~~~~~ 253 (319)
.+.|||+. ..++||||.+.+.++.+.++.+--.. ...+. ....| ...+. ....+.+.++ +..+.+
T Consensus 200 ~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~~--~~~~~--~~~~~~~~~~~~C~-~~p~i~f~f~~g~~~~v 274 (342)
T 3pvk_A 200 SVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKAF--NGKLT--QDSNGNSFYEVDCN-LSGDVVFNFSKNAKISV 274 (342)
T ss_dssp EEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHHT--TCEEE--ECTTSCEEEEECSC-CCSEEEEEESTTCEEEE
T ss_pred EEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHHc--CCeec--ccCCCceEEEEecC-CCCceEEEECCCCEEEE
Confidence 35678876 47999999999999999887763110 00000 00011 00000 0123345554 322221
Q ss_pred --------------------eEEEecCCCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 254 --------------------SLSILEEQPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 254 --------------------~f~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-+.+.. .-..|||..||+.+-.+.|+.++++-|..
T Consensus 275 p~~~~~~~~~~~~g~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 3pvk_A 275 PASEFAASLQGDDGQPYDKCQLLFDV--NDANILGDNFLRSAYIVYDLDDNEISLAQ 329 (342)
T ss_dssp EGGGGEEC----------CEEESEEE--CTTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred cHHHheeeccccCCCcCCeeEEEEee--CCCeEeCHHHHhcEEEEEECCCCEEEEEe
Confidence 111211 12469999999999999999999999976
No 184
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=87.67 E-value=1.3 Score=33.67 Aligned_cols=53 Identities=9% Similarity=-0.096 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEccCC
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGR 55 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~~~~ 55 (319)
++.++-+..-.++|+++++-.|.|++|+|+- +-.+.-.||-+|..|.|+....
T Consensus 31 ~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDL-SlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 31 VLLQVLEDTCRRQDFNPSEYDLKFQRTVLDL-SLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp BHHHHHHHHHHHTTCCGGGCEEEETTEEESS-SCBHHHHCCCSSCEEEEECSSS
T ss_pred CHHHHHHHHHHHhCCChhhCeEEeCCEeccc-cceeEecCCCCCCEEEEEEccC
Confidence 4556555555678999999999999999965 6789999999999999997644
No 185
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=87.24 E-value=1.4 Score=40.49 Aligned_cols=104 Identities=10% Similarity=0.007 Sum_probs=59.7
Q ss_pred EEEcCE-----EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEe------
Q psy17672 185 CKVNGY-----PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTT------ 253 (319)
Q Consensus 185 v~Ing~-----~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~------ 253 (319)
+.|+|+ ...++||||.+.+.++.+.++.+--... ...+. ...|.-...+......+.+.+|+..+.+
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~~~ 278 (329)
T 1oew_A 201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQVS-GAKSS-SSVGGYVFPCSATLPSFTFGVGSARIVIPGDYID 278 (329)
T ss_dssp EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTST-TCEEE-TTTTEEEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhCC-CcEEc-CCCCEEEEECCCCCCcEEEEECCEEEEECHHHee
Confidence 567774 4689999999999999999887632110 00000 0001000111111223445555544332
Q ss_pred -----------eEEEecC-CCCceeechhhhhhccEEEEc-cCCEEEEcc
Q psy17672 254 -----------SLSILEE-QPMDMLLGLDMLRRHECCIDL-RKNVLRIGT 290 (319)
Q Consensus 254 -----------~f~Vl~~-~~~d~ILG~D~L~~~~~~ID~-~~~~L~i~~ 290 (319)
-+.+... .....|||-.||+.+-.+.|+ .+++|-|..
T Consensus 279 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~ 328 (329)
T 1oew_A 279 FGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFAS 328 (329)
T ss_dssp EEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEE
T ss_pred eeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEec
Confidence 1111111 123589999999999999999 999988753
No 186
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=86.52 E-value=1.2 Score=40.96 Aligned_cols=104 Identities=11% Similarity=0.074 Sum_probs=58.8
Q ss_pred EEEcCE-----EEEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEEeEEEEEEEEEcCEEEEe------
Q psy17672 185 CKVNGY-----PVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTT------ 253 (319)
Q Consensus 185 v~Ing~-----~v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~g~v~~~~i~IG~~~~~~------ 253 (319)
+.|+|+ ...++||||.+.+.++.+.++.+--... ...+. ...|.-...+......+.+.+|+..+.+
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~-~a~~~-~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~~~ 279 (329)
T 3c9x_A 202 YSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYANVQ-SAQYD-NQQEGVVFDCDEDLPSFSFGVGSSTITIPGDLLN 279 (329)
T ss_dssp EEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTTCT-TCEEE-TTTTEEEEETTCCCCCEEEEETTEEEEECGGGGE
T ss_pred EEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHhCC-CcEEc-CCCCEEEEECCCCCCcEEEEECCEEEEECHHHee
Confidence 457774 4689999999999999999877632110 00000 0000000011111223344555433321
Q ss_pred -----------eEEEecCC-CCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 254 -----------SLSILEEQ-PMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 254 -----------~f~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-+.+.... .-..|||-.||+.+-.+.|+.+++|-|..
T Consensus 280 ~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~ 328 (329)
T 3c9x_A 280 LTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328 (329)
T ss_dssp EEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred eeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEec
Confidence 11122111 23589999999999999999999988753
No 187
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=86.10 E-value=1.5 Score=40.69 Aligned_cols=102 Identities=18% Similarity=0.111 Sum_probs=58.6
Q ss_pred EEEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEE---
Q psy17672 184 NCKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLT--- 252 (319)
Q Consensus 184 ~v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~--- 252 (319)
.+.|+|+. ..++||||.+.+.++.+.++.+--. +..... .|.-...+. .....+.+.+|+..+.
T Consensus 209 ~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~--~~~~~~---~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~ 283 (351)
T 1tzs_A 209 NIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNA--IGAAPV---DGEYAVECANLNVMPDVTFTINGVPYTLSP 283 (351)
T ss_dssp EEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHH--HTCEEC---SSSEEECGGGGGGSCCEEEEETTEEEEECT
T ss_pred EEEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHH--hCCccc---CCeEEEeCCCCccCCcEEEEECCEEEEECH
Confidence 36788876 3799999999999999888765210 000000 000000000 0011223333332221
Q ss_pred --------------eeEEEecC-----CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 253 --------------TSLSILEE-----QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 253 --------------~~f~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
|-+.+... .....|||-.||+.+-.+.|+.+++|-|..
T Consensus 284 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~ 340 (351)
T 1tzs_A 284 TAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAP 340 (351)
T ss_dssp TTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred HHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEE
Confidence 22222221 234589999999999999999999999976
No 188
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=85.85 E-value=1.4 Score=41.50 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=25.1
Q ss_pred ceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 264 DMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 264 d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-.|||--||+.+-.+.|+.+++|-|..
T Consensus 345 ~~ILGd~fl~~~yvvfD~~~~riGfA~ 371 (381)
T 1t6e_X 345 AVILGGAQMEDFVLDFDMEKKRLGFSR 371 (381)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred eEEEChHHhCCcEEEEECCCCEEEEec
Confidence 489999999999999999999999876
No 189
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=85.67 E-value=2.3 Score=40.30 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=29.3
Q ss_pred ceeechhhhhhccEEEEccCCEEEE-ccCCeeeecccCCCcc
Q psy17672 264 DMLLGLDMLRRHECCIDLRKNVLRI-GTTGTETKFLPERELP 304 (319)
Q Consensus 264 d~ILG~D~L~~~~~~ID~~~~~L~i-~~~~~~vpfl~~~~~~ 304 (319)
..|||--||+.+-++.|+.+++|-| .. ..+..+..|.
T Consensus 358 ~~ILG~~fl~~~yvvfD~~~~rIGf~A~----~~~~~~~~C~ 395 (403)
T 3aup_A 358 EITLGARQLEENLVVFDLARSRVGFSTS----SLHSHGVKCA 395 (403)
T ss_dssp SEEECHHHHTTSCEEEETTTTEEEEESS----CGGGGTCCGG
T ss_pred cEEEChHHhcCeEEEEECCCCEEEEecc----cccccCCCcc
Confidence 5799999999999999999999999 65 2334444554
No 190
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=85.45 E-value=1.3 Score=41.98 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=59.8
Q ss_pred EEEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEEE--eEEEEEEEEEcCEEEEe--
Q psy17672 184 NCKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQII--GRIHMVQVAIEKDFLTT-- 253 (319)
Q Consensus 184 ~v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~~--g~v~~~~i~IG~~~~~~-- 253 (319)
.+.|||+. ..|+||||.+.+.++.+.++.+.-. +.... ..|.-...+. .....+.+.+|+..+++
T Consensus 250 ~i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~--i~a~~---~~g~~~v~C~~~~~~P~i~f~~~g~~~~l~~ 324 (383)
T 2x0b_A 250 GVSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEA--LGAKK---RLFDYVVKCNEGPTLPDISFHLGGKEYTLTS 324 (383)
T ss_dssp EEEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHH--HTCEE---CSSCEEEEGGGTTTCCCEEEEETTEEEEECH
T ss_pred EEEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHH--hCCcc---cCCcEEEeccccccCceEEEEECCEEEEECH
Confidence 35678764 5899999999999999888665211 00000 0110000000 01123445556544432
Q ss_pred ---------------e--EEEecC---CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 254 ---------------S--LSILEE---QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 254 ---------------~--f~Vl~~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
- |.-.+. .+...|||-.||+.+-.+.|+.+++|-|..
T Consensus 325 ~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~ 381 (383)
T 2x0b_A 325 ADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFAL 381 (383)
T ss_dssp HHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEE
Confidence 1 111111 134589999999999999999999998764
No 191
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=85.08 E-value=0.95 Score=42.87 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=25.9
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||..||+.+-++.|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYVVFDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEEEEEEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 4589999999999999999999999987
No 192
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=84.18 E-value=1 Score=36.17 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=42.5
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEE--ecCeec--cCCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILL--NNGKHL--LEDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li--~~Gk~L--~d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
||.+|...|+.. +.+.....|+ |=.|.| .|.++||+++|+....+|+|...
T Consensus 65 tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 65 KLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp CHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred CHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 789999999887 7888888887 458888 45578999999999888888753
No 193
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=83.53 E-value=2.6 Score=34.09 Aligned_cols=50 Identities=24% Similarity=0.521 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEe--cCeeccC------CcccccccCCCCCcEEEEE
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLN--NGKHLLE------DGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~--~Gk~L~d------~~~tL~~~gI~~~d~l~l~ 51 (319)
+|+.+|-..|..++|.+. ...++- +.+.|-| -.+||+++||+.|++|.++
T Consensus 20 ~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred cCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 477887777877888764 455442 3445522 2479999999999999987
No 194
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=82.74 E-value=1.7 Score=40.90 Aligned_cols=102 Identities=16% Similarity=0.138 Sum_probs=58.4
Q ss_pred EEEcCEE------EEEEEcCCccccccCHHHHHHcCCccccccceeeEeeccceeEE--EeEEEEEEEEEcCEEEEee--
Q psy17672 185 CKVNGYP------VKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQI--IGRIHMVQVAIEKDFLTTS-- 254 (319)
Q Consensus 185 v~Ing~~------v~aLVDTGA~~siIs~~~a~rlgl~~~~~~~~~g~a~Gvg~~~~--~g~v~~~~i~IG~~~~~~~-- 254 (319)
+.|||.. ..|+||||.+.+.++.+.+..+--. +.... ...|.-...+ ......+.+.+|+..+++.
T Consensus 241 i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~--i~a~~--~~~g~~~v~C~~~~~lP~i~f~~~g~~~~l~~~ 316 (370)
T 3psg_A 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSD--IGASE--NSDGEMVISCSSIDSLPDIVFTIDGVQYPLSPS 316 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHH--TTCEE--CTTCCEECCGGGGGGCCCEEEEETTEEEEECHH
T ss_pred EEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHH--hCCcc--cCCCcEEEECCCcccCCcEEEEECCEEEEECHH
Confidence 4567753 4799999999999999887765210 00000 0001000000 0011234556666544322
Q ss_pred -----------EEE--ecC---CCCceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 255 -----------LSI--LEE---QPMDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 255 -----------f~V--l~~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
+.+ .+. .+.-.|||..||+.+-.+.|+.++++-|..
T Consensus 317 ~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~ 368 (370)
T 3psg_A 317 AYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAP 368 (370)
T ss_dssp HHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEE
Confidence 112 111 112389999999999999999999988754
No 195
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=82.26 E-value=3.3 Score=32.21 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEE--ecCeecc-CCcccccccCCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILL--NNGKHLL-EDGSCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li--~~Gk~L~-d~~~tL~~~gI~~~d~l~l~~~ 53 (319)
||.+|.+.|+.. +.......|+ |=.|.|. |.++||+++|+....+|+|...
T Consensus 45 tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 45 NSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp BTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred CHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 788999999865 5566678886 4478886 5578999999999999988754
No 196
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=81.41 E-value=1.5 Score=41.15 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=25.9
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||-.||+.+-.+.|+.+++|-|..
T Consensus 326 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 353 (383)
T 2ewy_A 326 NALVIGATVMEGFYVIFDRAQKRVGFAA 353 (383)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEEEECCCCeEEEEe
Confidence 3589999999999999999999999987
No 197
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=80.36 E-value=1.3 Score=42.77 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=25.9
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||..||+.+-++.|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYVVFDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 4589999999999999999999999977
No 198
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=80.03 E-value=3.4 Score=31.04 Aligned_cols=50 Identities=8% Similarity=0.111 Sum_probs=44.2
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
++.+||.+++.+.|++-+...++.-+.+|.. +++|-+.+|+-.-+|-+..
T Consensus 14 pL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~-~k~LvdQcVqgeGlVQinv 63 (89)
T 2juo_A 14 PIGNLKKLLEPRLQCSLDAHEICLQDIQLDP-DRSLFDQGVKTDGTVQLSV 63 (89)
T ss_dssp BGGGHHHHSHHHHCSCCSSCEEEETTEECCT-TSBTTTSSCCCCSEEEEEE
T ss_pred cHHHHHHHHHHHhcCCcccCeEEeeccccCC-CccHHHhhcccccEEEEEE
Confidence 4778999999999999999999988888886 7899999999888887763
No 199
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=78.43 E-value=4.4 Score=32.01 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHhh--hCCCC------CCeEEEe----cCeeccCCc------------ccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDE--CGIDA------TDMILLN----NGKHLLEDG------------SCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e--~gip~------~~q~Li~----~Gk~L~d~~------------~tL~~~gI~~~d~l~l~~ 52 (319)
.||.++|++|-.. .|.|. +...|-+ .|++|.|.+ .||+.|+|.||.+|.|+.
T Consensus 34 DTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 34 DTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLILSK 109 (111)
T ss_dssp CBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEEE
T ss_pred CcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEEEe
Confidence 4899999998654 25554 4556654 256675521 369999999999998864
No 200
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=77.49 E-value=6 Score=28.59 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=20.1
Q ss_pred CChHHHHHHHhhCHHHHHHHHhcCchhHHHH
Q psy17672 79 QDPAHVRDLLLACPDQLALLKQNNPRLSEAL 109 (319)
Q Consensus 79 ~dpe~~r~~il~nP~~l~~L~~~nP~La~ai 109 (319)
..|+.....+++||++++.| +||++..|+
T Consensus 7 e~~ee~~~~~m~dPEi~~im--~DP~~~~~l 35 (71)
T 2llw_A 7 ETPEETYQRAMKDPEVAAIM--QDPVMQSIL 35 (71)
T ss_dssp SCHHHHHHHHHHSHHHHHHH--TCTHHHHHH
T ss_pred CCcHHHHHHHhcCHHHHHHh--CCHHHHHHH
Confidence 35555556677888887776 677777666
No 201
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=76.03 E-value=2.5 Score=33.96 Aligned_cols=48 Identities=25% Similarity=0.407 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhh-hCCCCCCeEEE--ecCeeccCCcccccccCCCCCcEE
Q psy17672 1 MDVEQFRLICQDE-CGIDATDMILL--NNGKHLLEDGSCLKQAGVRDGDII 48 (319)
Q Consensus 1 ~tv~~lK~~i~~e-~gip~~~q~Li--~~Gk~L~d~~~tL~~~gI~~~d~l 48 (319)
.||.+|...|... .+.+.....|+ |-.|.|.|+++||+++|+....+|
T Consensus 73 ~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 73 HRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3799999999886 35666778887 458889876799999999975443
No 202
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=75.11 E-value=2.2 Score=40.18 Aligned_cols=28 Identities=7% Similarity=0.188 Sum_probs=25.8
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||-.||+.+-.+.|+.+++|-|..
T Consensus 338 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 365 (395)
T 2qp8_A 338 TGTVMGAVIMEGFYVVFDRARKRIGFAV 365 (395)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEEEECCCCEEEEEe
Confidence 4589999999999999999999999976
No 203
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=74.35 E-value=6.4 Score=32.23 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHhhh--CCCC------CCeEEEe----cCe-eccCC-c-----------ccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDEC--GIDA------TDMILLN----NGK-HLLED-G-----------SCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~--gip~------~~q~Li~----~Gk-~L~d~-~-----------~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.++|++|-... |+|- ++.-|-+ .|+ +|.|. . .||+.|+|.||.+|.|+.+
T Consensus 51 DTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l~~~ 128 (138)
T 2r2o_A 51 DTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC 128 (138)
T ss_dssp CBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEEEEC
Confidence 58999999997653 6654 3445543 244 36541 1 2799999999999999865
No 204
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=72.78 E-value=4.5 Score=38.69 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=24.7
Q ss_pred ceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 264 DMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 264 d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
-.|||--||+.+-++.|+.+++|-|..
T Consensus 371 ~~IlGd~fl~~~~vvfD~~~~riGfa~ 397 (413)
T 3vla_A 371 SIVIGGHQLEDNLVQFDLATSRVGFSG 397 (413)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ceeEehhhhcCeEEEEECCCCEEEEEE
Confidence 369999999999999999999999875
No 205
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=72.74 E-value=2.5 Score=34.25 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEec
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNN 26 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~ 26 (319)
+|+.+||..|+.++|+|+++|+|..-
T Consensus 66 ~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 66 SSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 68999999999999999999999853
No 206
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=72.03 E-value=20 Score=33.99 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=24.5
Q ss_pred cceEEEEEEEcC--EEEEEEEcCCccccccC
Q psy17672 178 VVMLYINCKVNG--YPVKAFVDSGAQTTIMS 206 (319)
Q Consensus 178 ~~~l~v~v~Ing--~~v~aLVDTGA~~siIs 206 (319)
...+++++.|+- +++.+++|||++...+.
T Consensus 19 ~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~ 49 (413)
T 3vla_A 19 TLQYVTTINQRTPLVSENLVVDLGGRFLWVD 49 (413)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCSSEEEE
T ss_pred CCeEEEEEEcCCCCcceEEEEeCCChhhhcc
Confidence 456899999986 88999999999987773
No 207
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=69.82 E-value=3.9 Score=28.58 Aligned_cols=8 Identities=25% Similarity=0.277 Sum_probs=3.3
Q ss_pred hhCHHHHH
Q psy17672 89 LACPDQLA 96 (319)
Q Consensus 89 l~nP~~l~ 96 (319)
++||.+++
T Consensus 18 m~dP~~~~ 25 (62)
T 2lnm_A 18 FQNPRVQA 25 (62)
T ss_dssp TTSHHHHH
T ss_pred cCCHHHHH
Confidence 34444443
No 208
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=69.02 E-value=12 Score=36.43 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=24.7
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||--||+.+-.+.|+.+++|-|..
T Consensus 449 ~~~ILGd~fl~~~y~vfD~~~~rIGfA~ 476 (478)
T 1qdm_A 449 PLWILGDVFMGPYHTVFDYGKLRIGFAK 476 (478)
T ss_dssp SEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEECHHHhccEEEEEECCCCEEEEEe
Confidence 3479999999999999999999988754
No 209
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=64.93 E-value=7.5 Score=28.07 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=8.7
Q ss_pred HhhCHHHHHHHHhcCchhHHHH
Q psy17672 88 LLACPDQLALLKQNNPRLSEAL 109 (319)
Q Consensus 88 il~nP~~l~~L~~~nP~La~ai 109 (319)
+.+||..+..+ .+||+++..+
T Consensus 38 ~~~NP~~~~k~-~~nP~v~~~i 58 (71)
T 2llw_A 38 AQQNPAALQEH-MKNPEVFKKI 58 (71)
T ss_dssp HHHCHHHHHHH-HHSHHHHHHH
T ss_pred HHHCHHHHHHH-HhCHHHHHHH
Confidence 44444444433 2344444333
No 210
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=62.95 E-value=13 Score=27.71 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=30.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|.+.+ +++.....+..||..+.. ....+.-+++||.|.+..
T Consensus 38 Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 38 TIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVH 82 (87)
T ss_dssp BHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEE
T ss_pred cHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEc
Confidence 566665544 577666667789988863 245556689999988764
No 211
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=62.71 E-value=12 Score=34.83 Aligned_cols=51 Identities=20% Similarity=0.153 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHhhh----CCCCCCeEEEe------cCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDEC----GIDATDMILLN------NGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~----gip~~~q~Li~------~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
|||.+....|.++. ..+.+..-|.- .|+.|.+ ++||+.||+++|+.|....
T Consensus 23 ~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~-~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 23 TMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA-GKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp CBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT-TSBGGGGTCCTTCEEEEEE
T ss_pred CCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC-CCCHHHhCCCCCceeeccC
Confidence 68888888887665 34677778876 5778987 6899999999999998763
No 212
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=62.50 E-value=6.4 Score=30.92 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=22.2
Q ss_pred HHHHHHhhCHHHHHHHHhcCchhHHHH
Q psy17672 83 HVRDLLLACPDQLALLKQNNPRLSEAL 109 (319)
Q Consensus 83 ~~r~~il~nP~~l~~L~~~nP~La~ai 109 (319)
.++++...||+....|-.++|+|+-||
T Consensus 60 qmK~~~~~nP~~a~~LL~q~PQLAyAl 86 (109)
T 2l9b_A 60 KFQEWTRAHPEDAASLLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHCchHHHHH
Confidence 366778889988888888999998887
No 213
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.29 E-value=16 Score=25.21 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||.+|...+ +++.....+..||+.+.. ..-.+.-+++||.|.+..
T Consensus 14 ~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 14 KTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp CCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred CcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEe
Confidence 3677776665 566776777789998864 235556799999998874
No 214
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=62.13 E-value=20 Score=28.89 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhhh--CCCC------CCeEEEe-cC---e-eccCCc------------ccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDEC--GIDA------TDMILLN-NG---K-HLLEDG------------SCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~--gip~------~~q~Li~-~G---k-~L~d~~------------~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.++|++|-... |+|. ++..|-+ .| + +|.|.+ .||+.|+|.||.+|.|..+
T Consensus 27 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~~~ 104 (127)
T 3h6n_A 27 DTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMSLI 104 (127)
T ss_dssp SBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEEEC
T ss_pred CchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEEEc
Confidence 48999999986542 5554 5667754 33 3 355411 3699999999999998754
No 215
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=60.53 E-value=13 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|.+ +.++++....+-.||.++.. ....+.-+++||.|-+..
T Consensus 16 Tl~~LL~----~l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 16 SVAALMT----ELDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILT 60 (73)
T ss_dssp BHHHHHH----HTTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEEC
T ss_pred cHHHHHH----HcCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEc
Confidence 4555443 46888888888899999964 356677799999999885
No 216
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=59.90 E-value=6.1 Score=34.51 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.8
Q ss_pred EEEcCEE-------EEEEEcCCccccccCHHHHHHc
Q psy17672 185 CKVNGYP-------VKAFVDSGAQTTIMSAKCAERC 213 (319)
Q Consensus 185 v~Ing~~-------v~aLVDTGA~~siIs~~~a~rl 213 (319)
+.|+|+. ..++||||.+.+.++.+.++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 6788876 4799999999999999988765
No 217
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=59.00 E-value=13 Score=26.68 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=19.3
Q ss_pred ChHHHHHHHhhCHHHHHHHHhcCchhHH
Q psy17672 80 DPAHVRDLLLACPDQLALLKQNNPRLSE 107 (319)
Q Consensus 80 dpe~~r~~il~nP~~l~~L~~~nP~La~ 107 (319)
-|+.|...+..|-++++.|+++|-.|.+
T Consensus 6 ~~e~~q~ll~EN~~LreAlkqsNq~mke 33 (70)
T 3brv_B 6 APETLQRCLEENQELRDAIRQSNQILRE 33 (70)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3677888777877777777777766653
No 218
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=55.98 E-value=12 Score=38.39 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccC---C------CCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAG---V------RDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~g---I------~~~d~l~l~~~ 53 (319)
+|+.+|+..|+..+|||++.|.|++.+..-.++....++|- . .|.++|++-.+
T Consensus 332 ~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 332 ENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp CCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 47999999999999999999999986544333355666542 2 35667777654
No 219
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=55.84 E-value=22 Score=33.12 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=21.5
Q ss_pred cceEEEEEEEcCEEEEEEEcCCccccccC
Q psy17672 178 VVMLYINCKVNGYPVKAFVDSGAQTTIMS 206 (319)
Q Consensus 178 ~~~l~v~v~Ing~~v~aLVDTGA~~siIs 206 (319)
...+++++.|+ .| +++|||++.+.+.
T Consensus 13 ~~~Y~~~i~iG-tP--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 13 TSLYTIPFHDG-AS--LVLDVAGPLVWST 38 (381)
T ss_dssp TCCEEEEEETT-EE--EEEETTCCCEEEC
T ss_pred CcEEEEEEeCC-CE--EEEECCCCceEEe
Confidence 45688999996 46 9999999999885
No 220
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=54.80 E-value=17 Score=25.21 Aligned_cols=45 Identities=22% Similarity=0.132 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|.+.+ +++.....+..||+.+.. ....+.-+++||.|.+..
T Consensus 17 tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 17 TVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEE
T ss_pred cHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEe
Confidence 677776655 567777777789998863 234455689999998764
No 221
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=54.11 E-value=28 Score=24.38 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.1
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|...+ +++.....+..||..+..+ . -+++||.|.+..
T Consensus 25 tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 25 RIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIR 65 (70)
T ss_dssp BHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEE
T ss_pred cHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEe
Confidence 666766654 5777777778999998652 3 489999998874
No 222
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=52.26 E-value=15 Score=34.09 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEecC-eeccCCcccccccCCC
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLNNG-KHLLEDGSCLKQAGVR 43 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~~G-k~L~d~~~tL~~~gI~ 43 (319)
.|+.+++..++..++++++.|.|+|.+ +...+.....+++.-.
T Consensus 332 ~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~ 375 (396)
T 4eut_A 332 NTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 375 (396)
T ss_dssp CBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCC
T ss_pred hHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCC
Confidence 378999999999999999999999998 4444544455555433
No 223
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=48.98 E-value=24 Score=32.10 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCChHHHHHHHhhCHHH-HHH---HHhcCchhHHHHhcCh-HHHHHHHHH
Q psy17672 78 LQDPAHVRDLLLACPDQ-LAL---LKQNNPRLSEALSTGK-DAFTKVFKE 122 (319)
Q Consensus 78 ~~dpe~~r~~il~nP~~-l~~---L~~~nP~La~ai~~~~-~~f~~~l~~ 122 (319)
.+||++.+++++.|+.- ++. +++.--+|.++|.+++ +.|.+.|..
T Consensus 256 ~~~p~~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~ 305 (314)
T 3ggo_A 256 KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKE 305 (314)
T ss_dssp TSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34666666666666642 332 3333444555554444 555555443
No 224
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=47.81 E-value=42 Score=23.58 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHhhhCCCC--CCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDA--TDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~--~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||.+|.+.+....++.. ..-.+.-||+.+.+ . +.-+++||.|.+..
T Consensus 21 ~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~-~----~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 21 NDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN-L----NTPLKDGDVISLLP 69 (74)
T ss_dssp SSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC-T----TCCCCTTCEEEEEC
T ss_pred CcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC-C----CcCCCCCCEEEEEC
Confidence 378899988876544332 33455568887653 2 23489999998863
No 225
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=45.15 E-value=6.9 Score=28.10 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=16.1
Q ss_pred CHHHHHHHHhcCchhHHHHhcChHHHHHHHHH
Q psy17672 91 CPDQLALLKQNNPRLSEALSTGKDAFTKVFKE 122 (319)
Q Consensus 91 nP~~l~~L~~~nP~La~ai~~~~~~f~~~l~~ 122 (319)
+|++.+.| ..||+++.++ .|| +|.+.|..
T Consensus 12 ~p~~~~kl-~~dP~t~~~~-~DP-~~~~~lq~ 40 (71)
T 2llv_A 12 DPNLIENL-KKNPKTSEMM-KDP-QLVAKLIG 40 (71)
T ss_dssp SSSCHHHH-HHSSTTHHHH-HSC-THHHHHHH
T ss_pred ChHHHHHH-HcChHHHHHh-cCH-HHHHHHHH
Confidence 45555554 5667776666 455 55554443
No 226
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=44.04 E-value=17 Score=33.82 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.3
Q ss_pred HhcCchhH
Q psy17672 99 KQNNPRLS 106 (319)
Q Consensus 99 ~~~nP~La 106 (319)
..+||+|.
T Consensus 234 a~s~p~lw 241 (341)
T 3ktd_A 234 AGTDPGLV 241 (341)
T ss_dssp GGSCHHHH
T ss_pred hcCCHHHH
Confidence 33444443
No 227
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=41.16 E-value=15 Score=26.68 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred hhCCC-CCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 13 ECGID-ATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 13 e~gip-~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
+.|++ +....+-.||.++.. ....+.-+++||.|-+..
T Consensus 26 ~l~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 26 ALKVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLY 64 (78)
T ss_dssp HHTCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECC
T ss_pred HcCCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEe
Confidence 45788 777778899999974 456777799999999874
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.52 E-value=19 Score=27.08 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=36.7
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEec---CeeccCCcccccccCCCCCcEEEEE
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNN---GKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~---Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
++.+|--.|-+++.+.++.-.|... +..|+- +++|.+|||++ |+.+
T Consensus 32 pL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdL-skSLndlgirE---Lya~ 80 (91)
T 2daj_A 32 SLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDL-TKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCT-TSCHHHHTCSE---EEEE
T ss_pred cHHHHHHHHhhcccCChhhEEEecCCCCCcccch-hcchhhhhhhh---hhee
Confidence 5677888888999999999999754 556664 68999999997 5555
No 229
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.68 E-value=24 Score=34.98 Aligned_cols=52 Identities=19% Similarity=0.331 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEec------CeeccCCccccccc--CCCCCcEEEEEcc
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNN------GKHLLEDGSCLKQA--GVRDGDIILVAMP 53 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~------Gk~L~d~~~tL~~~--gI~~~d~l~l~~~ 53 (319)
+|.+|-..|-...|+|++.-..+|. ...|++.+.|++++ +|.+||+|..-..
T Consensus 158 kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 158 KIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKD 217 (530)
T ss_dssp BGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEEC
T ss_pred CHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEec
Confidence 5778888888899999987776675 23355446799999 9999999988764
No 230
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=36.70 E-value=56 Score=28.52 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=28.8
Q ss_pred CCChHHHHHHHhhCHH-H---HHHHHhcCchhHHHHhcCh-HHHHHHHHH
Q psy17672 78 LQDPAHVRDLLLACPD-Q---LALLKQNNPRLSEALSTGK-DAFTKVFKE 122 (319)
Q Consensus 78 ~~dpe~~r~~il~nP~-~---l~~L~~~nP~La~ai~~~~-~~f~~~l~~ 122 (319)
..+|+.+++++.+|+. . +..+.+.--.+.++|.+++ +.|.+.|..
T Consensus 224 ~~~p~~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~ 273 (281)
T 2g5c_A 224 KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKE 273 (281)
T ss_dssp CSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3688888888888884 2 2344444456677776655 666666654
No 231
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.61 E-value=21 Score=35.44 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhhhCCCCCCeEEEe
Q psy17672 1 MDVEQFRLICQDECGIDATDMILLN 25 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~~q~Li~ 25 (319)
+|+.+||..|+.+.|+|+++|||..
T Consensus 46 ~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 46 SSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp SBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCHHHHHHHHHHHhCcCcccEEEEE
Confidence 6899999999999999999999973
No 232
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=35.93 E-value=48 Score=23.33 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=29.4
Q ss_pred CHHHHHHHHHhhhC-----CCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECG-----IDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~g-----ip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|...+..... ++.....+..||+.... +.-+++||.|.+..
T Consensus 27 tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~------~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 27 TVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF------DHPLTDGDEVAFFP 76 (81)
T ss_dssp BHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT------TCBCCTTCEEEEEC
T ss_pred CHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC------CCCCCCCCEEEEeC
Confidence 77888877764421 22333456789987753 22489999998863
No 233
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=34.94 E-value=14 Score=31.37 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.6
Q ss_pred Hh-hCHHHHH--HHHhcCchhHHHHh
Q psy17672 88 LL-ACPDQLA--LLKQNNPRLSEALS 110 (319)
Q Consensus 88 il-~nP~~l~--~L~~~nP~La~ai~ 110 (319)
++ +||++.+ ++.++||++-..+.
T Consensus 28 L~~~~Pqf~qlRq~vqqNPqlL~~lL 53 (171)
T 2qsf_X 28 IGLTVEDLLSLRQVVSGNPEALAPLL 53 (171)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHH
Confidence 44 6776443 34577777666653
No 234
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=34.00 E-value=70 Score=26.09 Aligned_cols=60 Identities=12% Similarity=0.228 Sum_probs=37.5
Q ss_pred ChHHHHHHH------hhCHHHHHHHHhcCchhHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy17672 80 DPAHVRDLL------LACPDQLALLKQNNPRLSEALSTGKDAFTKVFKEQLVEREKRQKQKIKLMNAHPFDTHAQRLIAE 153 (319)
Q Consensus 80 dpe~~r~~i------l~nP~~l~~L~~~nP~La~ai~~~~~~f~~~l~~~~~~~~~~~~~~~~~l~~dP~~~e~q~~i~~ 153 (319)
|-..+++.+ .+..++++-|++.+|+|.+-+ +.++..++.. -|-++||+...|.+
T Consensus 31 eK~~Lkev~kn~~~f~~e~e~i~alK~KSp~L~~K~----~~l~~~lk~K----------------i~~L~Peak~Fv~k 90 (140)
T 2w9y_A 31 EKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRL----ATVLEGNKKR----------------LDGLSPAAVEYAKK 90 (140)
T ss_dssp THHHHHHHHTTCCC----TTHHHHHHHHCHHHHHHH----HHHHHHHHHT----------------TTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHhCHHHHHHH----HHHHHHHHHH----------------HHcCCHHHHHHHHH
Confidence 334555553 356678888888888888666 3444443321 35578888888888
Q ss_pred HHHHHH
Q psy17672 154 EIRQKN 159 (319)
Q Consensus 154 ~i~~~~ 159 (319)
.|+.-.
T Consensus 91 li~~~r 96 (140)
T 2w9y_A 91 LIHMVT 96 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887743
No 235
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=33.59 E-value=37 Score=24.56 Aligned_cols=10 Identities=60% Similarity=0.747 Sum_probs=4.9
Q ss_pred hcCchhHHHH
Q psy17672 100 QNNPRLSEAL 109 (319)
Q Consensus 100 ~~nP~La~ai 109 (319)
++||++-..+
T Consensus 23 qqNP~lL~~l 32 (72)
T 1pve_A 23 QQNPSLLPAL 32 (72)
T ss_dssp TTCGGGHHHH
T ss_pred HHCHHHHHHH
Confidence 5555554443
No 236
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=32.50 E-value=25 Score=28.27 Aligned_cols=52 Identities=19% Similarity=0.109 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhh----hCCCCC----CeEEEe-cC---eeccCC-------------cccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDE----CGIDAT----DMILLN-NG---KHLLED-------------GSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e----~gip~~----~q~Li~-~G---k~L~d~-------------~~tL~~~gI~~~d~l~l~~ 52 (319)
.||.++|++|-.. .|+|.. ...|-+ .| ++|.|. =.||+.|+|.||.+|-|.+
T Consensus 49 DTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 49 DTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTCEEEEEE
T ss_pred CcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCCEEEEee
Confidence 4899999988532 377653 344433 22 233320 0268899999999998875
No 237
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.65 E-value=36 Score=27.93 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.2
Q ss_pred EecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 24 LNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 24 i~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
++.|+.-.|+.+||.+++.+-||.|.+..
T Consensus 109 v~~g~~~~dd~kTL~~~rF~iGDyidvaI 137 (143)
T 4a6q_A 109 TMSGRKGTDDSMTLQSQKFQIGDYLDIAI 137 (143)
T ss_dssp EETTBCCTTTTCBTGGGTCCTTCEEEEEE
T ss_pred EecCCCCCcccccHHHCCCcCCCEEEEEE
Confidence 34555555678999999999999998875
No 238
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.34 E-value=2.3e+02 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=14.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHH
Q psy17672 131 QKQKIKLMNAHPFDTHAQRLIAEEI 155 (319)
Q Consensus 131 ~~~~~~~l~~dP~~~e~q~~i~~~i 155 (319)
+.+..+++.++.+|++.=+.+.+.|
T Consensus 98 r~EL~aL~~a~~~DeakI~aL~~Ei 122 (175)
T 3lay_A 98 RYEYNALLTASSPDTAKINAVAKEM 122 (175)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3445556767878877555444443
No 239
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=31.18 E-value=93 Score=29.28 Aligned_cols=40 Identities=28% Similarity=0.533 Sum_probs=34.2
Q ss_pred HHHHHHhhCHHHHH----HHHhcCchhHHHHhcChHHHHHHHHH
Q psy17672 83 HVRDLLLACPDQLA----LLKQNNPRLSEALSTGKDAFTKVFKE 122 (319)
Q Consensus 83 ~~r~~il~nP~~l~----~L~~~nP~La~ai~~~~~~f~~~l~~ 122 (319)
.||+++++||+++. +|.++||+|++.|..|++.|.++|.+
T Consensus 248 ~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e 291 (368)
T 1oqy_A 248 NMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNE 291 (368)
T ss_dssp HHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcC
Confidence 58889999999765 56678999999998888999999864
No 240
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=30.72 E-value=23 Score=28.09 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhh--hCCCC------CCeEEEe-cC---e-eccCCc------------ccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDE--CGIDA------TDMILLN-NG---K-HLLEDG------------SCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e--~gip~------~~q~Li~-~G---k-~L~d~~------------~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.++|++|-.. .|.|. ++..|-+ .| + +|.|.+ .||+.|+|.||.+|-|+.+
T Consensus 37 DTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 37 DTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVALVSK 114 (117)
T ss_dssp SBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEEEEC
T ss_pred CchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEEEeC
Confidence 4899999998654 35554 4556654 34 3 354411 3699999999999998765
No 241
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=30.60 E-value=76 Score=24.12 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHhhhCCCCC-----------CeEEEecC-eeccC-----CcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECGIDAT-----------DMILLNNG-KHLLE-----DGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~gip~~-----------~q~Li~~G-k~L~d-----~~~tL~~~gI~~~d~l~l~~ 52 (319)
.|+++|-..+.+...+... .-.||..+ ..|+. =+++|.++|+.+|+.|+|.-
T Consensus 15 ~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 15 AKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred hhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 3778888888774332222 33444433 23321 23679999999999999863
No 242
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=30.50 E-value=49 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=25.5
Q ss_pred hhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 12 DECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 12 ~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.+.|+|++.-....||+.+..+ . +.+||.|-+..
T Consensus 28 ~~Lgl~~~~VvV~vNG~~v~~d-~------~l~GD~VeIv~ 61 (74)
T 2l32_A 28 RAVDLSPHEVTVLVDGRPVPED-Q------SVEVDRVKVLR 61 (74)
T ss_dssp HTTCCCSSCCCEECCCCCCCTT-S------SSCCCCEEECS
T ss_pred HHcCCCcceEEEEECCEECCHH-H------CCCCCEEEEEE
Confidence 3578999888778899988653 2 34699988874
No 243
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=29.41 E-value=88 Score=31.68 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhh--hCCCC------CCeEEEe-c---Ce-eccCCc------------ccccccCCCCCcEEEEEcc
Q psy17672 1 MDVEQFRLICQDE--CGIDA------TDMILLN-N---GK-HLLEDG------------SCLKQAGVRDGDIILVAMP 53 (319)
Q Consensus 1 ~tv~~lK~~i~~e--~gip~------~~q~Li~-~---Gk-~L~d~~------------~tL~~~gI~~~d~l~l~~~ 53 (319)
.||.++|++|-.. .|+|. ++..|-+ . |+ +|.|.+ .||+.|+|.||.+|.|+.+
T Consensus 284 DTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dga~v~L~p~ 361 (644)
T 3hm6_X 284 DTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC 361 (644)
T ss_dssp SBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCCcEEEEEec
Confidence 4899999999643 36554 4455543 2 33 355421 3799999999999999754
No 244
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=29.16 E-value=59 Score=23.30 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=21.1
Q ss_pred hCHHHHHHHHhcCchhHHHHhcChHHHHHHH
Q psy17672 90 ACPDQLALLKQNNPRLSEALSTGKDAFTKVF 120 (319)
Q Consensus 90 ~nP~~l~~L~~~nP~La~ai~~~~~~f~~~l 120 (319)
.-|+.+..|...|-+|.+||..++..+++-+
T Consensus 5 ~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~ 35 (70)
T 3brv_B 5 GAPETLQRCLEENQELRDAIRQSNQILRERC 35 (70)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4577888888999999999966555544433
No 245
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=26.78 E-value=1.1e+02 Score=26.75 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=6.4
Q ss_pred ChHHHHHHHhhCH
Q psy17672 80 DPAHVRDLLLACP 92 (319)
Q Consensus 80 dpe~~r~~il~nP 92 (319)
+|+.+++.+.+|+
T Consensus 234 ~p~~~~~~~~~n~ 246 (290)
T 3b1f_A 234 EPGMWTSILLTNQ 246 (290)
T ss_dssp CHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHCH
Confidence 4444455554444
No 246
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=25.26 E-value=84 Score=21.79 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=29.5
Q ss_pred CHHHHHHHHHhhhCCCCCCe--EEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDM--ILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q--~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
||.+|.+.+..... ..... .+..||+.... + .-+++||.|.+..
T Consensus 27 tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 27 TVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-S-----DFIQPNDTVALIP 72 (77)
T ss_dssp EHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-T-----SEECTTCEEEEEC
T ss_pred CHHHHHHHHHHHCc-chhcceEEEEECCEECCC-C-----CCcCCCCEEEEEC
Confidence 78888888776531 01222 56789998864 2 3489999998863
No 247
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=25.24 E-value=38 Score=24.15 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=27.8
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEEecCeeccCCcccccccCCCCCcEEEEE
Q psy17672 2 DVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVA 51 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~ 51 (319)
||.+|.+.+ +++.....+..||+.+.. + .-+++||.|.+.
T Consensus 32 Tv~dLl~~L----~~~~~~v~VavNg~~v~~-~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 32 KVRDILRAV----GFNTESAIAKVNGKVVLE-D-----DEVKDGDFVEVI 71 (77)
T ss_dssp CHHHHHHTT----TCSSCSSCEEETTEEECS-S-----SCCCSSCCCBCS
T ss_pred cHHHHHHHh----CCCCcCEEEEECCEECCC-C-----CCcCCCCEEEEE
Confidence 566665543 567766677789998865 2 358999988765
No 248
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=25.10 E-value=1.6e+02 Score=20.90 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHhhhC------C-----CCCCeEEEecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 1 MDVEQFRLICQDECG------I-----DATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 1 ~tv~~lK~~i~~e~g------i-----p~~~q~Li~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
.||.+|.+.+..... + ......+..||+.... . .-.+.-+++||.|.+..
T Consensus 25 ~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~-~-~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 25 SKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITS-M-KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp CBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGG-T-CSSSCBCCTTCEEEEEC
T ss_pred CcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccc-c-CCCCcCCCCCCEEEEeC
Confidence 378888888776531 1 1134456789987752 1 11233589999998863
No 249
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.76 E-value=1.1e+02 Score=22.91 Aligned_cols=47 Identities=9% Similarity=0.119 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhhhCCCCCCeEEE--ecCeeccCCcccccccCCCCCcEEEEEc
Q psy17672 2 DVEQFRLICQDECGIDATDMILL--NNGKHLLEDGSCLKQAGVRDGDIILVAM 52 (319)
Q Consensus 2 tv~~lK~~i~~e~gip~~~q~Li--~~Gk~L~d~~~tL~~~gI~~~d~l~l~~ 52 (319)
++++|+.+....++++...-+|. .+|..++| ++-+..+ +++|++|..
T Consensus 29 sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~Vdd-EeyF~tL---p~nT~lmvL 77 (91)
T 2eel_A 29 SLQELISKTLDALVIATGLVTLVLEEDGTVVDT-EEFFQTL---GDNTHFMIL 77 (91)
T ss_dssp SHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCC-HHHHTTS---CSSEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEec-hhhhhhC---CCCCEEEEE
Confidence 67889988888899975555554 47998876 4444443 355655554
No 250
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=22.76 E-value=57 Score=23.36 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=24.7
Q ss_pred CceeechhhhhhccEEEEccCCEEEEcc
Q psy17672 263 MDMLLGLDMLRRHECCIDLRKNVLRIGT 290 (319)
Q Consensus 263 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~ 290 (319)
...|||-.||+.+-.+.|+.++++-|..
T Consensus 58 ~~~ILGd~Fl~~~y~vfD~~~~riGfA~ 85 (87)
T 1b5f_B 58 PLWILGDVFMRPYHTVFDYGNLLVGFAE 85 (87)
T ss_dssp BEEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CeEEechHHhccEEEEEECCCCEEEEEE
Confidence 4589999999999999999999988754
No 251
>3bwu_D FIMD, outer membrane usher protein FIMD, N-terminal DOM; usher, N-terminal domain, ternary complex with chaperone and subunit, chaperone, structural protein, mebrane protein; 1.76A {Escherichia coli} SCOP: b.167.1.1 PDB: 1ze3_D 1zdx_A
Probab=22.07 E-value=1.3e+02 Score=23.16 Aligned_cols=40 Identities=5% Similarity=-0.075 Sum_probs=29.4
Q ss_pred cceEEEEEEEcCEEE-----EEEE-c-CCccccccCHHHHHHcCCcc
Q psy17672 178 VVMLYINCKVNGYPV-----KAFV-D-SGAQTTIMSAKCAERCNIMR 217 (319)
Q Consensus 178 ~~~l~v~v~Ing~~v-----~aLV-D-TGA~~siIs~~~a~rlgl~~ 217 (319)
.+.++|.+.|||+.+ .+-- + .+...-++++++.+++|+..
T Consensus 30 PG~Y~vdI~vN~~~~~~~~i~f~~~~~~~~~~pClt~~~L~~~Gv~~ 76 (125)
T 3bwu_D 30 PGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNT 76 (125)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEECSSTTSEEECCCHHHHHHTTBCG
T ss_pred CcEEEEEEEECCeEccceEEEEEecCCCCcccccCCHHHHHHcCCCc
Confidence 467889999999864 3322 2 23455799999999999973
No 252
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=21.77 E-value=3.5e+02 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy17672 133 QKIKLMNAHPFDTHAQRLIAEEIRQKNVEANMEAA 167 (319)
Q Consensus 133 ~~~~~l~~dP~~~e~q~~i~~~i~~~~~~~~~~~a 167 (319)
.-+..|.+||.||+--.++...|+|=.+--|++.+
T Consensus 32 ~ai~~l~~~~~np~~l~~~Q~~~~~~s~~~n~~s~ 66 (305)
T 3zqe_A 32 EALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSN 66 (305)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45777889999999888888888886666666544
Done!