RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17672
(319 letters)
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer,
retroviral protease domain, protein turnover; HET: DNA;
2.30A {Saccharomyces cerevisiae}
Length = 148
Score = 187 bits (476), Expect = 7e-60
Identities = 76/150 (50%), Positives = 107/150 (71%), Gaps = 3/150 (2%)
Query: 155 IRQKNVEANMEAAMEYNPETFGSVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCN 214
++Q+ ++ + A+EY PE F V MLYIN ++N YPVKAFVD+GAQTTIMS + A++
Sbjct: 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60
Query: 215 IMRLIDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSILEEQPMDMLLGLDMLRR 274
+ R+ID R+ G A+GVG +IIGRIH QV IE ++ S ++L + +D+L+GLDML+R
Sbjct: 61 LSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTVL-DTDIDVLIGLDMLKR 119
Query: 275 HECCIDLRKNVLRIGTTGTETKFLPERELP 304
H C+DL++NVLRI ET FL E E+P
Sbjct: 120 HLACVDLKENVLRIA--EVETSFLSEAEIP 147
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural
genomics consortiu retropepsin-like domain, protein
turnover, hydrolase; 1.70A {Homo sapiens}
Length = 148
Score = 179 bits (455), Expect = 1e-56
Identities = 102/146 (69%), Positives = 116/146 (79%)
Query: 159 NVEANMEAAMEYNPETFGSVVMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRL 218
+ + + P G V MLYINCKVNG+P+KAFVDSGAQ TIMS CAERCNIMRL
Sbjct: 3 SSHHHHHHSSGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL 62
Query: 219 IDTRWAGVAKGVGVQQIIGRIHMVQVAIEKDFLTTSLSILEEQPMDMLLGLDMLRRHECC 278
+D RWAGVAKGVG Q+IIGR+H+ Q+ IE DFL S SILE+QPMDMLLGLDMLRRH+C
Sbjct: 63 VDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCS 122
Query: 279 IDLRKNVLRIGTTGTETKFLPERELP 304
IDL+KNVL IGTTGT+T FLPE ELP
Sbjct: 123 IDLKKNVLVIGTTGTQTYFLPEGELP 148
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 102
Score = 54.6 bits (131), Expect = 6e-10
Identities = 13/64 (20%), Positives = 32/64 (50%)
Query: 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPTYH 60
++ FR++C+ E G+ A + ++ + L +D L G++DGD++++
Sbjct: 32 FELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRT 91
Query: 61 VAQS 64
++
Sbjct: 92 PGRT 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 9e-06
Identities = 42/354 (11%), Positives = 101/354 (28%), Gaps = 91/354 (25%)
Query: 35 SCLKQAGVRDGDIILV-AMPGRGPTYHVAQS-RHTAPHRSF------MT-AQLQDPAHVR 85
L + +R +L+ + G G T+ + P
Sbjct: 142 QALLE--LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP---- 195
Query: 86 DLLLACPDQLALLKQNNPRLSEA----------LSTGKDAFTKVFKEQ------LVEREK 129
+ +L LL Q +P + + + + ++ K + LV
Sbjct: 196 ETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 130 RQKQKIKLMNAHPFDTHAQRLIAEEIRQKNVEANMEAA------MEYNPETFG-----SV 178
+ + F+ + L+ R K V + AA ++++ T S+
Sbjct: 254 QNAKAWN-----AFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 179 VMLYINCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIG- 237
++ Y++C+ P + + + + AE W V + II
Sbjct: 307 LLKYLDCRPQDLPREV--LTTNPRRL--SIIAESIRDGLATWDNWKHVNCD-KLTTIIES 361
Query: 238 ----------RIHMVQVAI-EKDFLTTS--LSIL-----EEQPMDMLLGLD---MLRR-- 274
R ++++ + LS++ + M ++ L ++ +
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 275 -------HECCIDLRKNVLRIGTTGTETKFLPERELPSCARLTSASD--EEEYF 319
++L+ + + +P ++YF
Sbjct: 422 KESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 28.3 bits (62), Expect = 4.8
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 44/142 (30%)
Query: 3 VEQFRLI---CQDECGIDATDMILLNN-GKHLLE---------------DGSCLKQAGVR 43
V+ + + D+ D ++ G HL D L+Q
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 44 DGDIILVAMPGRGPTYHVAQSRHTAPHRSFMTAQLQDPAH---VRDL----------LLA 90
D A G + Q ++ ++ DP + V + L+
Sbjct: 510 DS----TAWNASGSILNTLQQLKF--YKPYIC--DNDPKYERLVNAILDFLPKIEENLIC 561
Query: 91 CPD----QLALLKQNNPRLSEA 108
++AL+ ++ EA
Sbjct: 562 SKYTDLLRIALMAEDEAIFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 47/326 (14%), Positives = 94/326 (28%), Gaps = 98/326 (30%)
Query: 45 GDI---ILVAMPGRGPT---YHVAQSR----HTAPHRSFMTAQLQDPAHVRDLL---LA- 90
G + +LV PT + +Q + P + A +P +L+ L
Sbjct: 14 GSLEHVLLV------PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 91 CPDQLALLKQNNPRLSEALSTGKDAFTKVF----------KEQLVEREKRQKQKIKLMNA 140
+ + + L+ F + + L E + + +L+
Sbjct: 68 VSSLVE--PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 141 HPFDTHAQRLIAEEIRQKNVEANMEAAME-----Y-------NPET-FGSVVMLYINCKV 187
+ A+ + +K+ A A E N + F + LY
Sbjct: 126 Y---ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY----- 177
Query: 188 NGYP--VKAFVDSGAQTTIMSAKCAERCNIM--RLID-TRWAGVAKGVGVQQIIGRIHMV 242
Y V + A+T + + + ++ W +
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---------------LENP 222
Query: 243 QVAIEKDFLTTS-LSILEEQPMDMLLGL-------DMLRRHECC-IDLRKNVLRIGTTGT 293
+KD+L + +S P L+G+ + +LR + G TG
Sbjct: 223 SNTPDKDYLLSIPISC----P---LIGVIQLAHYVVTAKLLGFTPGELRSYL--KGATGH 273
Query: 294 ETKFLPERELPSCARLTSASDEEEYF 319
+ L + A + +D E F
Sbjct: 274 S------QGLVT-AVAIAETDSWESF 292
Score = 40.8 bits (95), Expect = 6e-04
Identities = 56/360 (15%), Positives = 107/360 (29%), Gaps = 116/360 (32%)
Query: 3 VEQF-----RLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDI--ILVAMPGR 55
V +F L+ + G D +L L + + + DI + +
Sbjct: 61 VGKFLGYVSSLVEPSKVG--QFDQVL----NLCLTE---FENCYLEGNDIHALAAKLLQE 111
Query: 56 GPTYHVAQSRHTAPHRSFMTAQ--LQDPAHVRDLLLACPDQLALLKQNNPRLSEALSTGK 113
T + +++ ++++TA+ + P K++N L A+ G
Sbjct: 112 NDT-TLVKTKELI--KNYITARIMAKRP---------------FDKKSNSALFRAVGEGN 153
Query: 114 DAFTKVF----------KEQLVEREKRQKQKIKLMNAHPFDTHAQRLIAEEIRQKNVEA- 162
+F +E L + + + + A+ L E+ + ++A
Sbjct: 154 AQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGDL----IKFSAETL--SELIRTTLDAE 206
Query: 163 -------NMEAAMEYNPETFGSVVML------------------YINCKVNGYPVKAFVD 197
N+ +E NP L + K+ G+
Sbjct: 207 KVFTQGLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 198 --SGA----QTTIMSAKCAERCNIMRLIDTRWAG----VAKGVGVQQIIG-RIHMV--QV 244
GA Q + + AE D+ W V K + V IG R +
Sbjct: 266 YLKGATGHSQGLVTAVAIAET-------DS-WESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 245 AIEKDFLTTSLSILEEQPMDMLLGLDMLRRHECCIDLRKNVL--RIGTTGTETKFLPERE 302
++ L SL E P ML +L + + + T + LP +
Sbjct: 318 SLPPSILEDSLENNEGVPSPML----------SISNLTQEQVQDYVNKTNSH---LPAGK 364
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LVAMPGRGPTYHV 61
++Q + ++L+ GK +L+D L Q GVRDG + LV +
Sbjct: 39 IQQLKEEISQRFKAHPDQLVLIFAGK-ILKDPDSLAQCGVRDGLTVHLVIKRQHRAMGNE 97
Query: 62 AQSRHTAP 69
+ +
Sbjct: 98 CPASGPSS 105
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 96
Score = 35.8 bits (83), Expect = 0.003
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LVAMPGRGPT 58
V +F+ +A ++L+ GK +L D L Q G+ DG + +V GP+
Sbjct: 39 VRRFKKQISKYLHCNADRLVLIFTGK-ILRDQDILSQRGILDGSTVHVVVRSHSGPS 94
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.010
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 30/93 (32%)
Query: 89 LACPDQL-----ALLK---QNNPRLSEALSTGKDAFTKVFKEQLVER---------EKRQ 131
+A D+L ++ K + RL E DA +KV +++ E+ +++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQE-----LDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 132 KQKIKLMNAHPFDTHAQRLIAEEIRQKNVEANM 164
+Q K IA++ + +A++
Sbjct: 129 EQVEK--------NKINNRIADKAFYQQPDADI 153
Score = 32.8 bits (74), Expect = 0.078
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 120 FKEQLVER---EKRQKQKIKLMNAHPFDT-HAQRLIAEEIRQKNVEANMEAAMEY 170
+++L E K +Q+ + + + ++ E +KN N A +
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ---SEQVEKNKINNRIADKAF 145
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Length = 111
Score = 32.9 bits (75), Expect = 0.033
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRG 56
V + E I A L L+D L V G+I+ +++ R
Sbjct: 54 VGSLKEKIAGEIQIPANKQKLSGKAG-FLKDNMSLAHYNVGAGEILTLSLRERS 106
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics,
apoptosis, riken structural genomics/proteomics
initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 92
Score = 32.4 bits (73), Expect = 0.040
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGD-IILVAMPGRGPT 58
V+ + ++ G+ + L+ GK L E + L G++DG ++L+ GP+
Sbjct: 34 VQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKNSGPS 90
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural
genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 125
Score = 32.5 bits (74), Expect = 0.051
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LV---AMPGRGPT 58
V+QF+ ++L+ GK +L+D L Q G+ DG + LV
Sbjct: 54 VQQFKEAISKRFKSQTDQLVLIFAGK-ILKDQDTLIQHGIHDGLTVHLVIKRDPNSSSVD 112
Query: 59 YHVAQSRHTAPH 70
+ A H H
Sbjct: 113 KYAAALEHHHHH 124
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein
structur initiative, northeast structural genomics
consortium, NESG; NMR {Homo sapiens}
Length = 101
Score = 32.0 bits (73), Expect = 0.060
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LVAMPGRGP 57
V+QF+ ++L+ GK +L+D L Q G+ DG + LV P
Sbjct: 47 VQQFKEEISKRFKSHTDQLVLIFAGK-ILKDQDTLSQHGIHDGLTVHLVIKTQNRP 101
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.066
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 30/58 (51%)
Query: 131 QKQKIKLMNAHPFDTHAQRLIAEEIRQKNVEANMEAAME-YNPETFGSVVMLYINCKV 187
+KQ +K K ++A+++ Y + S L I +
Sbjct: 18 EKQALK---------------------K-----LQASLKLYADD---SAPALAIKATM 46
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana,
uncharacterized putative protein, NESG, structural
genomics; NMR {Arabidopsis thaliana}
Length = 84
Score = 31.4 bits (72), Expect = 0.073
Identities = 6/48 (12%), Positives = 18/48 (37%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILV 50
+ + + I + L+ +G +L + ++Q + I +
Sbjct: 33 LLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQL 80
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K
4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Length = 128
Score = 32.0 bits (72), Expect = 0.10
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPTYHVA 62
++ + QD+ GI L+ GK LEDG L ++ + + + RG +
Sbjct: 23 IDNVKSKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTLHLVLRLRGGIIEPS 81
Query: 63 QSRHT 67
Sbjct: 82 LKALA 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin,
ubiquitin-like domain, structural genomics, signaling
protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Length = 100
Score = 30.8 bits (70), Expect = 0.14
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LV 50
++Q + ++L+ GK +L+D L Q GVRDG + LV
Sbjct: 44 IQQLKEEISQRFKAHPDQLVLIFAGK-ILKDPDSLAQCGVRDGLTVHLV 91
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein;
ubiquitin-like domain, solution structure, signaling
protein; NMR {Homo sapiens} SCOP: d.15.1.1
Length = 106
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII--LVAMPGRGPT 58
V + G++ +G+ L D ++ + ++ +V+ P + PT
Sbjct: 46 VFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEELKIPKDYVVQVIVSQPVQNPT 102
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae}
Length = 106
Score = 30.4 bits (69), Expect = 0.19
Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGD-IILVAMPGRGPTYHV 61
+ + + + + + L+ +GK +L+D + + G++DGD ++ + + V
Sbjct: 24 ILETKTKLAQSISCEESQIKLIYSGK-VLQDSKTVSECGLKDGDQVVFMVSQKKSTKTKV 82
Query: 62 AQSRHTAPHRSFMTAQLQ 79
+ + + A L+
Sbjct: 83 TERDPNSSSVDKLAAALE 100
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain,
NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.15.1.1
Length = 89
Score = 30.1 bits (68), Expect = 0.21
Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LVAMPGRGPT 58
+E+ R + L GK LE+G L V DII L+ P GP+
Sbjct: 32 IEELRERVWALFDVRPECQRLFYRGKQ-LENGYTLFDYDVGLNDIIQLLVRPDSGPS 87
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana}
Length = 94
Score = 30.1 bits (68), Expect = 0.24
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 11 QDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILV 50
M L +G L +D L + G+ + I+V
Sbjct: 45 HIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVV 84
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 31.9 bits (73), Expect = 0.25
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 94 QLALLKQNNPRLSEALS----TGKDAFTKVFKEQLVEREKRQ---KQKIKLMNAHPFD 144
QL LK+ N L LS T F + R K ++ M FD
Sbjct: 94 QLYKLKKANRSLKIMLSIGGWTWSTNFPAAASTE----ATRATFAKTAVEFMKDWGFD 147
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton,
microtubule, CESG, structural genomics, protein
structure initiative, PSI; NMR {Caenorhabditis elegans}
SCOP: d.15.1.1
Length = 122
Score = 30.3 bits (68), Expect = 0.31
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 1 MDVEQFRLICQDECGIDATDMILL------NNGKHLLEDGSCLKQAGVRDGDII 48
M + + + G M + L + LK GVRDG I
Sbjct: 28 MSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 81
>1acx_A Actinoxanthin; antibacterial protein; 2.00A {Streptomyces
globisporus} SCOP: b.1.7.1 PDB: 1hzk_A 1hzl_A* 1j48_A
Length = 108
Score = 29.9 bits (66), Expect = 0.40
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 40 AGVRDGDIILVAMPGRGPTYHVAQS 64
+G DG + V++ G TY++AQ
Sbjct: 10 SGASDGQSVSVSVAAAGETYYIAQC 34
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.9 bits (69), Expect = 0.46
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 23/87 (26%)
Query: 69 P-HRSFMTA---QLQDPAHVRDLLLAC----------PDQLALLKQNNPRLSEALSTGK- 113
P R ++ + L++A P L +NN + +
Sbjct: 143 PLIR-IVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDEL 201
Query: 114 -------DAFTKVFKEQLVEREKRQKQ 133
DA +K++ Q ++ Q+Q
Sbjct: 202 NKKCTFWDAISKLYYVQFFFKQAEQEQ 228
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Length = 172
Score = 30.0 bits (67), Expect = 0.56
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII 48
+E + QD+ GI L+ GK LEDG L ++ +
Sbjct: 119 IENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTL 163
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 30.1 bits (68), Expect = 0.97
Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 94 QLALLKQNNPRLSEALS----TGKDAFTKVFKEQLVEREKRQ---KQKIKLMNAHPFD 144
QL LKQ NP L +S T + F+ V R+ + + + FD
Sbjct: 112 QLNKLKQTNPNLKTIISVGGWTWSNRFSDVAATA----ATREVFANSAVDFLRKYNFD 165
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 29.9 bits (68), Expect = 1.1
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 94 QLALLKQNNPRLSEALS----TGKDAFTKVFKEQLVEREKRQ---KQKIKLMNAHPFD 144
Q+ LLK+NN L LS T F + E R+ +KLM FD
Sbjct: 76 QMYLLKKNNRNLKTLLSIGGWTYSPNFKTPASTE----EGRKKFADTSLKLMKDLGFD 129
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling
protein-metal binding protein COM; HET: TRE; 1.70A {Homo
sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A
2y5b_B
Length = 152
Score = 29.2 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII 48
+E + QD+ GI L+ GK LEDG L ++ +
Sbjct: 99 IENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTL 143
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 30.1 bits (68), Expect = 1.2
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 215 IMRLIDTRWAGVAKGVGVQQIIGRIHMVQ------VAIEKDFLTTSLSIL 258
+ ++A A G G+ +I G + + V K F ++
Sbjct: 92 FGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVK-FFGGLGTLG 140
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 29.4 bits (66), Expect = 1.3
Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 86 DLLLACPDQLALLKQNNPRLSEALSTGKDAF-TKVFKEQLVEREKRQKQ----KIKLMNA 140
D + PDQ++ +K ++P + A+S G + + + Q + +++
Sbjct: 57 DSSILGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQR 116
Query: 141 HPFD 144
+ D
Sbjct: 117 YNLD 120
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 29.6 bits (67), Expect = 1.3
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 94 QLALLKQNNPRLSEALS----TGKDAFTKVFKEQLVEREKRQ---KQKIKLMNAHPFD 144
QL LLK+ N L LS T F R+ K +KL+ FD
Sbjct: 117 QLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTD----AGRKNFAKTAVKLLQDLGFD 170
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 222 RWAGVAKGVGVQQIIGRIHM------VQVAIEKDFLTTSLSIL 258
R+A G G+ QI G + +V K + LS+
Sbjct: 95 RFAPDTSGSGIPQIEGHLEGKLPLVWQRVLPIK-LVGGFLSLG 136
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 29.2 bits (66), Expect = 2.1
Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 93 DQLALLKQNNPRLSEALSTGKDAFTKVFKEQLVE-REKRQK---QKIKLMNAHPFD 144
+ LK NP+L LS G F +V+ R + I + H FD
Sbjct: 58 QTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFD 113
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin,
fusion protein, fluore protein, transcription; HET: CR2;
1.40A {Aequorea victoria} PDB: 3ako_B*
Length = 307
Score = 28.6 bits (63), Expect = 2.8
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LV 50
+E + QD+ GI L+ GK LEDG L ++ + LV
Sbjct: 254 DTIENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTLHLV 303
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 105
Score = 27.2 bits (60), Expect = 2.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 23 LLNNGKHLLEDGSCLKQAGVRDGDII 48
L + G+ L ED L+ G+R+ D +
Sbjct: 65 LTSAGEKLTEDRKKLRDYGIRNRDEV 90
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 28.4 bits (64), Expect = 3.0
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 93 DQLALLKQNNPRLSEALSTGKDAFTKVFKEQLVE-REKRQ---KQKIKLMNAHPFD 144
D L LK NP+L LS G F ++ + R+ K + H FD
Sbjct: 57 DTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFD 112
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 28.1 bits (63), Expect = 4.2
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 93 DQLALLKQNNPRLSEALSTGKDAF-TKVFKEQLVEREKRQ---KQKIKLMNAHPFD 144
+ L LK N L L+ G F F + + RQ + I+ + + FD
Sbjct: 57 EALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFD 112
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding,
isopeptide BO ligase, nucleotide-binding, UBL
conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A
2kx0_A
Length = 96
Score = 26.7 bits (59), Expect = 4.4
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LV-AMPGRGPTYH 60
+E + QD+ GI L+ GK LEDG L ++ + LV + G
Sbjct: 24 IENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTLHLVLRLRGYADLRE 82
Query: 61 VAQSRHTAPH 70
+ P
Sbjct: 83 DPDRQDHHPG 92
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase
complex; HET: 3TL; 1.70A {Feline immunodeficiency virus}
PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A*
4fiv_A* 1fiv_A* 1b11_A*
Length = 116
Score = 26.9 bits (59), Expect = 4.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 13/57 (22%)
Query: 183 INCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRI 239
I VNGYP+K +D+GA T++ R + + +Q+IG I
Sbjct: 16 ILIFVNGYPIKFLLDTGADITVL-----NRRD----FQVKN----SIENGRQMIGGI 59
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A
{Mason-pfizer monkey virus} PDB: 1nso_A
Length = 114
Score = 26.7 bits (59), Expect = 5.7
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 9/61 (14%)
Query: 183 INCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMV 242
+ ++ +++GA TI+ + W ++ I +
Sbjct: 12 LTLWLDDKMFTGLINTGADVTIIKLED---------WPPNWPITDTLTNLRGIGQSNNPK 62
Query: 243 Q 243
Q
Sbjct: 63 Q 63
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3
protein, PF00240, structural GEN joint center for
structural genomics, JCSG; 1.80A {Homo sapiens} PDB:
1wx9_A
Length = 90
Score = 26.1 bits (58), Expect = 6.4
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPT 58
V++F+ I + L+ G+ +L+D L++ V I LV
Sbjct: 28 VKEFKEHIAASVSIPSEKQRLIYQGR-VLQDDKKLQEYNVGGKVIHLVERAPPQTH 82
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 27.3 bits (61), Expect = 6.6
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 48 ILVAMPGRGPTYHVAQSRHTAPHRSFMTAQLQDPAHVRDLLLACPDQLALLKQNNPRLSE 107
I+ P + V PH ++ D L+ P +L +
Sbjct: 6 IIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPV-EMLAGRRLKAVF 64
Query: 108 ALSTGKDAFTK 118
L G DA
Sbjct: 65 VLGAGVDAILS 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,897,842
Number of extensions: 298605
Number of successful extensions: 760
Number of sequences better than 10.0: 1
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 51
Length of query: 319
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 225
Effective length of database: 4,077,219
Effective search space: 917374275
Effective search space used: 917374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)