RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17672
(319 letters)
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 38.7 bits (90), Expect = 9e-05
Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 1 MDVEQFRLICQDECGIDATDMILLNNGKHL-------LEDGSCLKQAGVRDGDIILV 50
M V++ + + + ++++L + D L+ V +GD +LV
Sbjct: 33 MTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 35.9 bits (83), Expect = 5e-04
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII-LV 50
V QF+ GI + L+ +GK +L+D ++ ++DG + LV
Sbjct: 23 VLQFKEAINKANGIPVANQRLIYSGK-ILKDDQTVESYHIQDGHSVHLV 70
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 34.9 bits (80), Expect = 0.002
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 1 MDVEQFRLICQDECGIDATDMILLNNGK------HLLEDGSCLKQAGVRDGDII-LVAMP 53
+ + +F+ + G A+ M L G L ++ + L V DG I ++
Sbjct: 29 LTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88
Query: 54 GRGPT 58
G GP+
Sbjct: 89 GSGPS 93
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 32.2 bits (73), Expect = 0.013
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRG 56
+E + QD+ GI L+ GK LEDG L ++ + + + RG
Sbjct: 23 IENVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLSDYNIQKESTLHLVLRLRG 75
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus
[TaxId: 11665]}
Length = 104
Score = 32.4 bits (74), Expect = 0.016
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 185 CKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMVQV 244
+N P+ +D+GA T++++ N ++ ++ G+G V
Sbjct: 13 VLINDTPLNVLLDTGADTSVLTTA---HYNRLKYRGRKY--QGTGIGGVGGNVETFSTPV 67
Query: 245 AIE 247
I+
Sbjct: 68 TIK 70
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 29.8 bits (67), Expect = 0.076
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 1 MDVEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILV 50
M+V++F+ I + L+ G+ +L+D L++ V I LV
Sbjct: 21 MNVKEFKEHIAASVSIPSEKQRLIYQGR-VLQDDKKLQEYNVGGKVIHLV 69
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 30.2 bits (68), Expect = 0.11
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRD 44
V + + I + + L + + L+DG L + G
Sbjct: 23 VFELKRIVEGILKRPPDEQRLYKDDQL-LDDGKTLGECGFTS 63
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 28.7 bits (64), Expect = 0.19
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 3 VEQFRLICQDECG---IDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILV 50
V+ + + E G L+ GK +L D ++ + + + ++V
Sbjct: 25 VKVLKEKIEAEKGRDAFPVAGQKLIYAGK-ILSDDVPIRDYRIDEKNFVVV 74
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 28.5 bits (63), Expect = 0.39
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDII 48
E+ + L + G+ L ED L+ G+R+ D +
Sbjct: 45 QEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEV 90
>d1nara_ c.1.8.5 (A:) Seed storage protein {Vicia narbonensis,
Narbonin [TaxId: 3912]}
Length = 289
Score = 29.7 bits (66), Expect = 0.43
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 86 DLLLACPDQLALLKQNNPRLSEALSTG--------KDAFTKVFKEQLVEREKRQKQKIKL 137
D+ L P+++ LK+ +P + +S G A V+ E K QK
Sbjct: 59 DVELFGPEKVKNLKRRHPEVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSD 118
Query: 138 MNAHPFD 144
+ + D
Sbjct: 119 DSGNLID 125
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian
retrovirus 1, SRV-1 [TaxId: 11942]}
Length = 107
Score = 28.2 bits (63), Expect = 0.50
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 11/94 (11%)
Query: 183 INCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQ----IIGR 238
+ ++ +++GA TI+ + + T G+ + +Q + R
Sbjct: 12 LTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWR 71
Query: 239 IHMVQVAIEKDFLTTSLSILEEQPMDMLLGLDML 272
+ K F+ +L + L G D+L
Sbjct: 72 DKENNSGLIKPFVIPNLPV-------NLWGRDLL 98
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 28.7 bits (63), Expect = 0.85
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 86 DLLLACPDQLALLKQNNPRLSEALSTGKDAFTKVFKEQLVEREKRQ---KQKIKLMNAHP 142
+ +QL LKQ NP L +S G ++ F + R+ + + +
Sbjct: 104 QPIAGNINQLNKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYN 163
Query: 143 FD 144
FD
Sbjct: 164 FD 165
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease
{Feline immunodeficiency virus [TaxId: 11673]}
Length = 113
Score = 27.4 bits (61), Expect = 1.1
Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 183 INCKVNGYPVKAFVDSGAQTTIMSAKCAERCNIMRLIDTRWAGVAKGVGVQQIIGRIHMV 242
I VNGYP+K +D+GA TI+ R + + + + + G
Sbjct: 13 ILIFVNGYPIKFLLDTGADITIL-----NRRD----FQVKNSIENGRQNMIGVGGGKRGT 63
Query: 243 ---QVAIEKD-------FLTTSLSILEEQPMDM-LLGLDML 272
V +E + ++ +LE+ + LLG D +
Sbjct: 64 NYINVHLEIRDENYKTQCIFGNVCVLEDNSLIQPLLGRDNM 104
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 25.9 bits (57), Expect = 1.9
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 10 CQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRG 56
G + + L +G + + + + D DII G
Sbjct: 33 FAKRQGKEMDSLRFLYDGIRI-QADQTPEDLDMEDNDIIEAHREQIG 78
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 25.8 bits (57), Expect = 2.0
Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 3 VEQFRLICQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRG 56
+++ + G+ + L G+ + D K+ G+ + D+I V G
Sbjct: 25 LKKLKESYCQRQGVPMNSLRFLFEGQ-RIADNHTPKELGMEEEDVIEVYQEQTG 77
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 27.4 bits (60), Expect = 2.1
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 16 IDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPTYHVAQSRHTAPHRSFMT 75
A ++++ N GK + L A + GD +++ P + + P T
Sbjct: 88 YGADNILVTNGGKQSI---FNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTT 144
Query: 76 AQLQDPAHVRDLLLACPDQLALLKQNNP 103
+ Q + A + LL N P
Sbjct: 145 VETQFKVSPEQIRQAITPKTKLLVFNTP 172
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
virus, strain pr-C [TaxId: 11886]}
Length = 124
Score = 26.7 bits (59), Expect = 2.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 186 KVNGYPVKAFVDSGAQTTIMS 206
K + A +DSGA TI+S
Sbjct: 26 KQRSVYITALLDSGADITIIS 46
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C,
EpsC {Vibrio cholerae [TaxId: 666]}
Length = 87
Score = 25.7 bits (56), Expect = 2.7
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 32 EDGSCLKQAGVRDGDIIL 49
+D + G++DGD+ +
Sbjct: 27 KDPVLFESIGLQDGDMAV 44
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 243
Score = 26.7 bits (58), Expect = 3.2
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
Query: 80 DPAHVRDLLLACPDQLALLKQNNPRLSEALSTGKDAFTKVFKEQLVEREKRQKQKIKLMN 139
D + L L D++ + ++ L +A+ G F K + E + K+ N
Sbjct: 1 DGVSISALNLMNQDKVLM--ESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFN 58
Query: 140 AHPFDTHAQRLIAEEI 155
+ + ++I
Sbjct: 59 K--GMSDHSTITMKKI 72
>d2ed6a1 b.170.1.1 (A:32-201) Envelope protein VP28 {White spot
syndrome virus, WSSV [TaxId: 92652]}
Length = 170
Score = 26.2 bits (57), Expect = 4.2
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 25 NNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPTYHVAQSR 65
GK + +G Q D D+++ + GR V Q+
Sbjct: 45 TLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNL 85
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 26.6 bits (58), Expect = 4.2
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 3/94 (3%)
Query: 10 CQDECGIDATDMILLNNGKHLLEDGSCLKQAGVRDGDIILVAMPGRGPTYHVAQSRHTAP 69
++ + + I+ G L L QA + GD ++V P + +
Sbjct: 83 RENGLSVTPEETIVTVGGSQAL---FNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVV 139
Query: 70 HRSFMTAQLQDPAHVRDLLLACPDQLALLKQNNP 103
+ + A + L N+P
Sbjct: 140 VEVETLPEEGFVPDPERVRRAITPRTKALVVNSP 173
>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 309
Score = 26.3 bits (57), Expect = 5.4
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 112 GKDAFTKVFKEQLVEREKRQKQKIKLMNAHPFDTHAQRLIAE 153
G+ F +V K ++ + R IK M + + E
Sbjct: 19 GEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGE 60
>d1q20a_ c.37.1.5 (A:) Cholesterol sulfotransferase sult2b1b
{Human (Homo sapiens) [TaxId: 9606]}
Length = 294
Score = 26.0 bits (56), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 42 VRDGDIILVAMPGRGPTY 59
VRD DI ++ P G T+
Sbjct: 41 VRDDDIFIITYPKSGTTW 58
>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 7.3
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 112 GKDAFTKVFKEQLVEREKRQKQKIKLMNAHPFDTHAQRLIAEEIR 156
G F V K ++ + +K++ D + + E
Sbjct: 16 GSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEAN 60
>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 285
Score = 25.8 bits (56), Expect = 7.5
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 112 GKDAFTKVFKEQLVEREKRQKQKIKLMNAHPFDTHAQRLIAE 153
G F V + R+K+ IK++ + ++ E
Sbjct: 18 GCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMRE 59
>d1j99a_ c.37.1.5 (A:) Hydroxysteroid sulfotransferase sult2a1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 25.6 bits (55), Expect = 8.3
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 42 VRDGDIILVAMPGRGPT 58
+RD D+I++ P G
Sbjct: 31 IRDEDVIILTYPKSGTN 47
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 25.3 bits (56), Expect = 9.7
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 183 INCKVNGYPVKAFVDSGAQTTI 204
+ ++ G +A +D+GA T+
Sbjct: 11 VTIRIGGQLKEALLDTGADDTV 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.395
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,166,496
Number of extensions: 53529
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 32
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)