BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17674
(302 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 225 bits (573), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 102/134 (76%), Positives = 116/134 (86%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
+TNVLGFKGPRKM+V++PGM +ERVSI P ETL+ W +KN ++IIEL NKTP W
Sbjct: 140 ETNVLGFKGPRKMSVIVPGMNMVHERVSIRPRNEHETLLARWQNKNTESIIELQNKTPVW 199
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 200 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 259
Query: 289 SIALSSFDSKLACE 302
+IALSSFDSKLACE
Sbjct: 260 AIALSSFDSKLACE 273
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 45/56 (80%), Gaps = 3/56 (5%)
Query: 113 PIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK 168
P++++ V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK
Sbjct: 10 PVDVE---VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKK 62
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 223 bits (568), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 101/134 (75%), Positives = 115/134 (85%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
+TNVLGFKGPRKM+V++PGM +ERV I P ETL+ W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 289 SIALSSFDSKLACE 302
+IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 13/94 (13%)
Query: 110 GSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKD 169
GS+ IE+Q +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK
Sbjct: 1 GSVDIEVQ-----DLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKV 55
Query: 170 TNVLGFKGPRKMTVLIPGMTQSYERVSITPLEIS 203
+ G K + T S +S+ P ++S
Sbjct: 56 FLLAGRKRKKSKT--------SNYLISVDPTDLS 81
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 100/134 (74%), Positives = 115/134 (85%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
+TNVLGFKGPRKM+V++PGM +ERV I P ETL+ W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
N+DT+SYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTESYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251
Query: 289 SIALSSFDSKLACE 302
+IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 13/94 (13%)
Query: 110 GSLPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKD 169
GS+ IE+Q +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK
Sbjct: 1 GSVDIEVQ-----DLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKV 55
Query: 170 TNVLGFKGPRKMTVLIPGMTQSYERVSITPLEIS 203
+ G K + T S +S+ P ++S
Sbjct: 56 FLLAGRKRKKSKT--------SNYLISVDPTDLS 81
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 91/134 (67%), Positives = 111/134 (82%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
+TNVLGF+GPR+MTV+IPGM+ ERV I P S+ L+ W +K ++++IELHNK P W
Sbjct: 143 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 202
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 203 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 262
Query: 289 SIALSSFDSKLACE 302
+IALSSFD KLACE
Sbjct: 263 AIALSSFDGKLACE 276
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 127 FVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLE 162
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+
Sbjct: 28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD 63
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 86/128 (67%), Positives = 106/128 (82%)
Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
+TNVLGF+GPR+MTV+IPGM+ ERV I P S+ L+ W +K ++++IELHNK P W
Sbjct: 119 ETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVW 178
Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
N+D+ SY LNF GRVTQASVKNFQI+H +DP+YIVLQFGR +ED FT+DYRYPLC LQAF
Sbjct: 179 NDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAF 238
Query: 289 SIALSSFD 296
+IALSSFD
Sbjct: 239 AIALSSFD 246
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 127 FVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLE 162
FVL PA Q + +CR+TRD+KG+DRG+YP+YFLHL+
Sbjct: 4 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD 39
>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter
pdb|1VH4|B Chain B, Crystal Structure Of A Stabilizer Of Iron Transporter
Length = 435
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 128 VLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLI 185
L A + Y+ I DR+G+ + FLHL + T++ +G R L+
Sbjct: 98 ALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLL 155
>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|B Chain B, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 423
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 128 VLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLI 185
L A + Y+ I DR+G+ + FLHL + T++ +G R L+
Sbjct: 96 ALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLL 153
>pdb|3V3D|A Chain A, Crystal Structure Of An Eyfp Single Mutant
Length = 257
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 96 RGSHVISDPDEINSGSLPI--EMQGEVVGN 123
RGSH++S +E+ +G +PI E+ G+V G+
Sbjct: 17 RGSHMVSKGEELFTGVVPILVELDGDVNGH 46
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 147 KGVDRGLYPTYFLHLERDYGKKDTNVLGFKGPRKMTVLI------PGMTQSYERVSITPL 200
+GV G Y T + H R + L F G KM I P + R+
Sbjct: 151 RGVVEGFYGTPWSHQAR------LSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPYPDK 204
Query: 201 EISET--LIECWNSKNMDNIIELH-NKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDN 257
E ++ L+ N +D + +H + WN++ + +L ++ Q V++F + DN
Sbjct: 205 EAAQLQELVAVANENEVDFVWAIHPGQDIKWNKEDRDLLLAKFEKMYQLGVRSFAVFFDN 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,759,164
Number of Sequences: 62578
Number of extensions: 288137
Number of successful extensions: 686
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 16
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)