Query psy17674
Match_columns 302
No_of_seqs 182 out of 355
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:03:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502|consensus 100.0 1.4E-73 3E-78 544.7 15.6 180 123-302 101-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 2E-60 4.3E-65 437.6 15.6 166 131-296 1-246 (246)
3 KOG2503|consensus 99.8 7.1E-21 1.5E-25 189.3 4.3 78 217-297 485-562 (565)
4 PF12043 DUF3527: Domain of un 98.2 8.3E-06 1.8E-10 79.8 9.4 108 174-297 224-344 (346)
5 cd08695 C2_Dock-B C2 domains f 35.6 48 0.001 30.4 3.8 50 177-232 21-72 (189)
6 PF07935 SSV1_ORF_D-335: ORF D 33.3 54 0.0012 26.1 3.2 21 141-168 8-30 (72)
7 cd08694 C2_Dock-A C2 domains f 30.6 56 0.0012 30.3 3.4 52 175-232 19-72 (196)
8 PRK15095 FKBP-type peptidyl-pr 29.7 1.2E+02 0.0025 26.6 5.1 27 258-284 105-131 (156)
9 PRK10737 FKBP-type peptidyl-pr 21.6 1.6E+02 0.0034 27.2 4.6 24 261-284 104-127 (196)
10 COG1556 Uncharacterized conser 20.5 1.2E+02 0.0026 28.7 3.6 16 170-185 199-214 (218)
11 TIGR03562 osmo_induc_OsmC pero 20.2 79 0.0017 27.0 2.2 14 282-295 42-55 (135)
No 1
>KOG2502|consensus
Probab=100.00 E-value=1.4e-73 Score=544.67 Aligned_cols=180 Identities=57% Similarity=0.985 Sum_probs=174.2
Q ss_pred hhhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce----------------------------------
Q psy17674 123 NLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK---------------------------------- 168 (302)
Q Consensus 123 ~l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk---------------------------------- 168 (302)
+++.||++|+|+|.++||+|+|||+||++||||.||+||+.++++|
T Consensus 101 ~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvG 180 (355)
T KOG2502|consen 101 TFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVG 180 (355)
T ss_pred chhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceee
Confidence 8999999999999999999999999999999999999998755332
Q ss_pred ---------------------------------------eeeecCCCCCceEEEEecCcCCC--CceeeeccCCchhhHH
Q psy17674 169 ---------------------------------------DTNVLGFKGPRKMTVLIPGMTQS--YERVSITPLEISETLI 207 (302)
Q Consensus 169 ---------------------------------------e~NVlg~kGPRkM~viIP~~~~~--~~r~~~~P~~e~~sLl 207 (302)
|+||||++|||+|+|++||+... ++++..+|..++.+++
T Consensus 181 klRSN~lGTKFtVyD~g~~~~r~~~~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~~~l 260 (355)
T KOG2502|consen 181 KLRSNLLGTKFTVYDNGVNPSRRFNKVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHPSLL 260 (355)
T ss_pred eeecccccceEEEecCCCCcccccccCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCcccccccccccchh
Confidence 89999999999999999999988 8899999999999999
Q ss_pred HHhhcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHH
Q psy17674 208 ECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQA 287 (302)
Q Consensus 208 ~~~~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQA 287 (302)
.+|++++++.+++|+||+|+||+++||||||||||||+||||||||||..++++||||||||++|+|||||+||||+|||
T Consensus 261 ~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~~p~~iiLQFGrV~kD~FTmDYrYPlSa~QA 340 (355)
T KOG2502|consen 261 FRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHALDPEYIILQFGRVGKDVFTMDYRYPLSAFQA 340 (355)
T ss_pred hhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccCCCCEEEEEeeeeccceeeecccCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccC
Q psy17674 288 FSIALSSFDSKLACE 302 (302)
Q Consensus 288 FaIaLSSfd~KlaCe 302 (302)
|||||||||+|||||
T Consensus 341 FaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 341 FAICLSSFDTKLACE 355 (355)
T ss_pred HHHHHHhccccccCC
Confidence 999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=2e-60 Score=437.62 Aligned_cols=166 Identities=58% Similarity=0.993 Sum_probs=138.3
Q ss_pred cCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce------------------------------------------
Q psy17674 131 PAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK------------------------------------------ 168 (302)
Q Consensus 131 P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk------------------------------------------ 168 (302)
|||+|++|||+|+|||+|++++|||.|||||+.++|++
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999999999999999999777653
Q ss_pred ---------------------------------eeeecCCCCCceEEEEecCcCCCCc----eeeeccCC-chhhHHHHh
Q psy17674 169 ---------------------------------DTNVLGFKGPRKMTVLIPGMTQSYE----RVSITPLE-ISETLIECW 210 (302)
Q Consensus 169 ---------------------------------e~NVlg~kGPRkM~viIP~~~~~~~----r~~~~P~~-e~~sLl~~~ 210 (302)
++||||++|||+|+|+||++..++. ++.+.|.+ +.++++.++
T Consensus 81 ~F~iyD~g~~~~~~~~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~p~~~~~~~~~~~~ 160 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSKSISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQPLNQEKDSLLSRF 160 (246)
T ss_dssp EEEEEESSB-CCCSTCCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B-----SS-CCCSHHHHH
T ss_pred EEEEECCCCCCccccccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeeeccccccccccccc
Confidence 8999999999999999999998876 67778876 677899999
Q ss_pred hcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHH
Q psy17674 211 NSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSI 290 (302)
Q Consensus 211 ~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaI 290 (302)
.+...+++++|+||+|+||+++++|+|||+|||++|||||||||+++++++||||||||++|+|+|||+|||||+|||||
T Consensus 161 ~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i 240 (246)
T PF01167_consen 161 QNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPSDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAI 240 (246)
T ss_dssp HCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTTBTTSESEEEEEEETTEEEEEEETT-BHHHHHHH
T ss_pred cccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccCCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCc
Q psy17674 291 ALSSFD 296 (302)
Q Consensus 291 aLSSfd 296 (302)
||||||
T Consensus 241 ~lssfd 246 (246)
T PF01167_consen 241 ALSSFD 246 (246)
T ss_dssp HHHHHH
T ss_pred HHhcCC
Confidence 999997
No 3
>KOG2503|consensus
Probab=99.81 E-value=7.1e-21 Score=189.34 Aligned_cols=78 Identities=46% Similarity=0.738 Sum_probs=72.1
Q ss_pred ceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHHHHHcCc
Q psy17674 217 NIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFD 296 (302)
Q Consensus 217 ~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaIaLSSfd 296 (302)
.+.++.||+|.|||.++-|+|||.||||+.|.|||||-... ..|||||||+.+.|++||+||||+.||||+||++.-
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~g---kQvmqFgRidg~aytldfqypfSa~QaFavalanvt 561 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELFG---KQVMQFGRIDGPAYTLDFQYPFSAGQAFAVALANVT 561 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeecc---hhhheeccccCCcccCCCCCchHHHHHHHHHHhhhh
Confidence 45699999999999999999999999999999999997764 479999999999999999999999999999999864
Q ss_pred c
Q psy17674 297 S 297 (302)
Q Consensus 297 ~ 297 (302)
-
T Consensus 562 q 562 (565)
T KOG2503|consen 562 Q 562 (565)
T ss_pred h
Confidence 3
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.17 E-value=8.3e-06 Score=79.78 Aligned_cols=108 Identities=22% Similarity=0.372 Sum_probs=77.2
Q ss_pred CCCCCceEEEEecCcCCCCceeeeccCCc---hhhHHHHhhcCC------CC---ceeEeecCCCcccCCCCcEEeecCC
Q psy17674 174 GFKGPRKMTVLIPGMTQSYERVSITPLEI---SETLIECWNSKN------MD---NIIELHNKTPTWNEDTQSYVLNFHG 241 (302)
Q Consensus 174 g~kGPRkM~viIP~~~~~~~r~~~~P~~e---~~sLl~~~~~~~------~d---~~i~L~nK~P~wne~~~sy~LnF~G 241 (302)
...++..++||||+..- + -|..+ ..+||+||+++. +| .+.+|.|..-. +-..
T Consensus 224 ~~~~~~s~tVvlP~G~H-g-----~P~~g~~~PS~LI~RWrSGG~CDCGGWDmgC~L~VL~n~~~~----------~~~~ 287 (346)
T PF12043_consen 224 SNSSSCSTTVVLPSGVH-G-----LPNTGNGGPSSLIDRWRSGGSCDCGGWDMGCPLRVLSNQSQN----------SKKS 287 (346)
T ss_pred CCCCCccEEEEecCCcc-C-----CCCCCCCCChHHHHHhhhCCCcCCCCcccCCCeEEeCCCCcc----------cccc
Confidence 34577899999997631 1 13333 578999999874 23 46677764422 1224
Q ss_pred ccccccccceEEEeCCC-CCcEEEEEeeccCCeEEEEecCCCCHHHHHHHHHHcCcc
Q psy17674 242 RVTQASVKNFQIIHDND-PEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFDS 297 (302)
Q Consensus 242 RVt~aSVKNFQLv~~~d-~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaIaLSSfd~ 297 (302)
+.+.+.-+=|.|..... .+.-+|-+--|.++.|.++|+-.||+||||+||+|-+++
T Consensus 288 ~~~~~~~~~feLf~QG~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 288 SSSKESSHPFELFVQGSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred ccccccCCceeeeecccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45555667788876543 223799999999999999999999999999999987664
No 5
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=35.59 E-value=48 Score=30.43 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=32.2
Q ss_pred CCceEEEEecCcCCCCceee--eccCCchhhHHHHhhcCCCCceeEeecCCCcccCCC
Q psy17674 177 GPRKMTVLIPGMTQSYERVS--ITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDT 232 (302)
Q Consensus 177 GPRkM~viIP~~~~~~~r~~--~~P~~e~~sLl~~~~~~~~d~~i~L~nK~P~wne~~ 232 (302)
..|.+.|.+-=.+.+|+++. +.+....+. ...| ...+..|++.|.|+|.-
T Consensus 21 ~~rNIeV~v~v~~~~G~~~~~cI~~~~g~~~-~se~-----~S~V~yH~~~P~W~Eti 72 (189)
T cd08695 21 TAKNIEVTMVVLDADGQVLKDCISLGSGEPP-CSEY-----RSFVLYHNNSPRWNETI 72 (189)
T ss_pred CcceEEEEEEEEcCCCCCccCCEEcCCCCCc-cceE-----EEEEEEcCCCCCCceeE
Confidence 47888888877777777642 223333333 3323 35788999999999853
No 6
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=33.34 E-value=54 Score=26.09 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=15.7
Q ss_pred EEEeccCCCCCCCcceeeEee-ec-cCCce
Q psy17674 141 RITRDRKGVDRGLYPTYFLHL-ER-DYGKK 168 (302)
Q Consensus 141 ~I~Rdk~G~~rgl~PtY~L~l-e~-~~gKk 168 (302)
+|.|.++| .||+|+ |+ ++|+.
T Consensus 8 ~~irE~KG-------kYYVY~iE~~~~G~~ 30 (72)
T PF07935_consen 8 IIIRERKG-------KYYVYKIEKDINGER 30 (72)
T ss_pred EEEEEeCC-------eEEEEEEEeccCCce
Confidence 57799998 699985 66 55664
No 7
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=30.61 E-value=56 Score=30.26 Aligned_cols=52 Identities=15% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCceEEEEecCcCCCCceee--eccCCchhhHHHHhhcCCCCceeEeecCCCcccCCC
Q psy17674 175 FKGPRKMTVLIPGMTQSYERVS--ITPLEISETLIECWNSKNMDNIIELHNKTPTWNEDT 232 (302)
Q Consensus 175 ~kGPRkM~viIP~~~~~~~r~~--~~P~~e~~sLl~~~~~~~~d~~i~L~nK~P~wne~~ 232 (302)
....|.+.|.+-=.+.+|+++. |.+....+ .+..| ...+..|++.|.|+|.-
T Consensus 19 ~s~~rNIeVtv~vr~~~G~~i~~~i~~gsg~~-~~se~-----~S~V~Yh~~~P~W~EtI 72 (196)
T cd08694 19 KTSDKNVEVTVSVCNEDGKIIPGVISLGAGEE-PIDEY-----KSVIYYQVDKPKWFETF 72 (196)
T ss_pred CCCcceEEEEEEEECCCCCCCceeEEcCCCCC-cceeE-----EEEEEeecCCCCCceeE
Confidence 3456778888777777777642 22322222 22222 34677899999999853
No 8
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=29.74 E-value=1.2e+02 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.9
Q ss_pred CCCcEEEEEeeccCCeEEEEecCCCCH
Q psy17674 258 DPEYIVLQFGRTSEDVFTMDYRYPLCP 284 (302)
Q Consensus 258 d~~~iVLQFGKv~~d~F~lDf~yPlS~ 284 (302)
+.+.+....-+|+++..++||++||..
T Consensus 105 ~G~~~~~~V~~i~~~~v~vD~NHPLAG 131 (156)
T PRK15095 105 DGSEMPGVIREINGDSITVDFNHPLAG 131 (156)
T ss_pred CCCEEEEEEEEEcCCEEEEECCCcCCC
Confidence 334455556689999999999999974
No 9
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=21.58 E-value=1.6e+02 Score=27.18 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.0
Q ss_pred cEEEEEeeccCCeEEEEecCCCCH
Q psy17674 261 YIVLQFGRTSEDVFTMDYRYPLCP 284 (302)
Q Consensus 261 ~iVLQFGKv~~d~F~lDf~yPlS~ 284 (302)
.+....=+|+++..++||++||.-
T Consensus 104 ~~~~~V~ev~~d~V~vD~NHPLAG 127 (196)
T PRK10737 104 PVPVEITAVEDDHVVVDGNHMLAG 127 (196)
T ss_pred cEEEEEEEEcCCEEEEECCCcCCC
Confidence 455667789999999999999974
No 10
>COG1556 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=1.2e+02 Score=28.68 Aligned_cols=16 Identities=50% Similarity=0.891 Sum_probs=13.6
Q ss_pred eeecCCCCCceEEEEe
Q psy17674 170 TNVLGFKGPRKMTVLI 185 (302)
Q Consensus 170 ~NVlg~kGPRkM~viI 185 (302)
.-|+|-.|||+..++|
T Consensus 199 ~~V~GvHGP~~~~vIi 214 (218)
T COG1556 199 ILVVGVHGPRKVVVII 214 (218)
T ss_pred EEEEeecCCeEEEEEE
Confidence 5678999999999876
No 11
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=20.20 E-value=79 Score=26.99 Aligned_cols=14 Identities=14% Similarity=0.114 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcC
Q psy17674 282 LCPLQAFSIALSSF 295 (302)
Q Consensus 282 lS~lQAFaIaLSSf 295 (302)
.+|.|.|++||++|
T Consensus 42 ~nPeeLLlaAlaaC 55 (135)
T TIGR03562 42 TNPEELIAAAHAGC 55 (135)
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999876
Done!