Query psy17674
Match_columns 302
No_of_seqs 182 out of 355
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 20:03:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2E-72 7E-77 524.3 16.4 188 114-302 16-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.6E-68 5.6E-73 490.8 16.7 173 124-296 1-246 (246)
3 2ypj_A Eccel5A, endoglucanase 23.6 42 0.0014 28.2 2.4 28 248-275 67-94 (155)
4 4ba6_A Endoglucanase CEL5A; ca 23.2 43 0.0015 27.8 2.4 28 248-275 48-75 (144)
5 3cgm_A SLYD, peptidyl-prolyl C 21.4 1E+02 0.0034 25.7 4.4 22 263-284 102-123 (158)
6 2ql8_A Putative redox protein; 21.0 65 0.0022 25.8 3.0 14 282-295 46-59 (143)
7 2kr7_A FKBP-type peptidyl-prol 18.9 1.4E+02 0.0047 24.5 4.7 22 262-283 110-131 (151)
8 1lql_A OSMC, osmotical inducib 18.3 62 0.0021 26.9 2.4 14 282-295 64-77 (166)
9 1zxu_A AT5G01750 protein; PFAM 17.0 1.7E+02 0.0058 25.0 5.0 43 248-293 154-204 (217)
10 2bjo_A Organic hydroperoxide r 16.8 79 0.0027 24.9 2.6 14 282-295 42-55 (136)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2e-72 Score=524.28 Aligned_cols=188 Identities=61% Similarity=1.089 Sum_probs=151.8
Q ss_pred cccccccchhhhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce-------------------------
Q psy17674 114 IEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK------------------------- 168 (302)
Q Consensus 114 ~~~~~~~~~~l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk------------------------- 168 (302)
..+.++++ ||++||++|+|+|++|||+|+|||+|+++|+||+|||||+.+++++
T Consensus 16 ~~~~~~~~-~~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~~~~~fLLaarK~k~~~ts~YiIS~d~~dls 94 (276)
T 2fim_A 16 ENLYFQSM-EPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLS 94 (276)
T ss_dssp ----------CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEECSSSCEEEEEEEECTTCSSCEEEEESCTTC--
T ss_pred CccccCHH-HHHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeCCCCEEEEEEEeccCCCCceEEEEecchhcc
Confidence 56778888 9999999999999999999999999999999999999998655432
Q ss_pred ------------------------------------------------eeeecCCCCCceEEEEecCcCCCCceeeeccC
Q psy17674 169 ------------------------------------------------DTNVLGFKGPRKMTVLIPGMTQSYERVSITPL 200 (302)
Q Consensus 169 ------------------------------------------------e~NVlg~kGPRkM~viIP~~~~~~~r~~~~P~ 200 (302)
|+||||++|||+|+|+||++..+++++.++|.
T Consensus 95 r~s~~yvGKLrSNflGtkF~iyD~G~~p~~~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~~~~~~~~~p~ 174 (276)
T 2fim_A 95 RGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPR 174 (276)
T ss_dssp ----CEEEEEEECSSSSEEEEECSSBCGGGCTTSCGGGBCCEEEEEEEC---------CCEEEEEECBCTTSCBCCCCCS
T ss_pred cCCceEEEEEEEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEecccCC
Confidence 88999999999999999999999999999999
Q ss_pred CchhhHHHHhhcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecC
Q psy17674 201 EISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRY 280 (302)
Q Consensus 201 ~e~~sLl~~~~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~y 280 (302)
++.++|+.+|++++.+++++|+||+|+||+++++|||||+||||+|||||||||+++|+++||||||||++|+|+|||+|
T Consensus 175 ~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~d~~~ivlQFGKv~~d~FtmD~~y 254 (276)
T 2fim_A 175 NASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 254 (276)
T ss_dssp STTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTTCTTSCSEEEEEEETTEEEEEECT
T ss_pred CcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEeecCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCccccccC
Q psy17674 281 PLCPLQAFSIALSSFDSKLACE 302 (302)
Q Consensus 281 PlS~lQAFaIaLSSfd~KlaCe 302 (302)
||||||||||||||||+|||||
T Consensus 255 PlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 255 PLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp TCCHHHHHHHHHHTCC------
T ss_pred CCCHHHHHHHHHHhcccccccC
Confidence 9999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.6e-68 Score=490.80 Aligned_cols=173 Identities=63% Similarity=1.140 Sum_probs=157.4
Q ss_pred hhhhhcccCCCCceEEEEEEeccCCCCCCCcceeeEeeeccCCce-----------------------------------
Q psy17674 124 LERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK----------------------------------- 168 (302)
Q Consensus 124 l~~Fl~~P~P~g~~vqC~I~Rdk~G~~rgl~PtY~L~le~~~gKk----------------------------------- 168 (302)
|++||++|+|+|++|||+|+|||+|+++|+||+||||++.+++++
T Consensus 1 ~~~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGKL 80 (246)
T 3c5n_A 1 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKL 80 (246)
T ss_dssp CTTGGGSCCCTTCEEEEEEEECC------CCCEEEEEESSSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEEE
T ss_pred ChhHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEeCCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEEE
Confidence 689999999999999999999999999999999999998654332
Q ss_pred --------------------------------------eeeecCCCCCceEEEEecCcCCCCceeeeccCCchhhHHHHh
Q psy17674 169 --------------------------------------DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECW 210 (302)
Q Consensus 169 --------------------------------------e~NVlg~kGPRkM~viIP~~~~~~~r~~~~P~~e~~sLl~~~ 210 (302)
|+||||++|||+|+|+||++..+++++.++|.++.++++.+|
T Consensus 81 rsNf~Gt~F~iyD~g~~p~~~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~~~~~~~p~~~~~~~~~~~ 160 (246)
T 3c5n_A 81 RSNLLGNRFTVFDNGQNPQRGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRW 160 (246)
T ss_dssp EECSSSSEEEEECSCBCGGGCTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTSCBCCCCCSSTTSSHHHHH
T ss_pred EEccCCCEEEEECCCCCcccccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCCCEeeccCCCccccchhhh
Confidence 889999999999999999999999999999999999999999
Q ss_pred hcCCCCceeEeecCCCcccCCCCcEEeecCCccccccccceEEEeCCCCCcEEEEEeeccCCeEEEEecCCCCHHHHHHH
Q psy17674 211 NSKNMDNIIELHNKTPTWNEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSI 290 (302)
Q Consensus 211 ~~~~~d~~i~L~nK~P~wne~~~sy~LnF~GRVt~aSVKNFQLv~~~d~~~iVLQFGKv~~d~F~lDf~yPlS~lQAFaI 290 (302)
++++.+++++|+||+|+||+++++|||||+||||+|||||||||+++|+++||||||||++|+|+|||+|||||||||||
T Consensus 161 ~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI 240 (246)
T 3c5n_A 161 QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAI 240 (246)
T ss_dssp HHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTTBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHH
T ss_pred hccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCc
Q psy17674 291 ALSSFD 296 (302)
Q Consensus 291 aLSSfd 296 (302)
||||||
T Consensus 241 ~LsSfD 246 (246)
T 3c5n_A 241 ALSSFD 246 (246)
T ss_dssp HHHTCC
T ss_pred HHHcCC
Confidence 999998
No 3
>2ypj_A Eccel5A, endoglucanase CEL5A; hydrolase, cellulase, xyloglucan, ITC; HET: BGC; 2.35A {Eubacterium cellulosolvens}
Probab=23.59 E-value=42 Score=28.16 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=22.9
Q ss_pred ccceEEEeCCCCCcEEEEEeeccCCeEE
Q psy17674 248 VKNFQIIHDNDPEYIVLQFGRTSEDVFT 275 (302)
Q Consensus 248 VKNFQLv~~~d~~~iVLQFGKv~~d~F~ 275 (302)
-|||.|-.+-+.-.|||.|.|+.++.+.
T Consensus 67 nknfeikvdy~gadivlifarw~~~iwa 94 (155)
T 2ypj_A 67 NKNFEIKVDYNGADIVLIFARWDKDIWA 94 (155)
T ss_dssp TSCEEEEEEEEESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEecCCCcEEEEEeecChhhhh
Confidence 3999998766666799999999998753
No 4
>4ba6_A Endoglucanase CEL5A; carbohydrate-binding protein, plant cell WALL degradation, beta-jelly roll; 1.42A {Eubacterium cellulosolvens}
Probab=23.16 E-value=43 Score=27.77 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=22.9
Q ss_pred ccceEEEeCCCCCcEEEEEeeccCCeEE
Q psy17674 248 VKNFQIIHDNDPEYIVLQFGRTSEDVFT 275 (302)
Q Consensus 248 VKNFQLv~~~d~~~iVLQFGKv~~d~F~ 275 (302)
-|||.|-.+-+.-.|||.|.|+.++.+.
T Consensus 48 nknfeikvdy~gadivlifarw~~~iwa 75 (144)
T 4ba6_A 48 NKNFEIKVDYNGADIVLIFARWDKDIWA 75 (144)
T ss_dssp TSCEEEEEEEEESCEEEEEEETTTTEEE
T ss_pred CcCeEEEEecCCCcEEEEEeecChhhhh
Confidence 3899998766666799999999998753
No 5
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=21.42 E-value=1e+02 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.9
Q ss_pred EEEEeeccCCeEEEEecCCCCH
Q psy17674 263 VLQFGRTSEDVFTMDYRYPLCP 284 (302)
Q Consensus 263 VLQFGKv~~d~F~lDf~yPlS~ 284 (302)
....=+|+++..++||++||..
T Consensus 102 ~~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 102 PLTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEEECCCEEEEeCCccccC
Confidence 3445688999999999999963
No 6
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=21.00 E-value=65 Score=25.85 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHcC
Q psy17674 282 LCPLQAFSIALSSF 295 (302)
Q Consensus 282 lS~lQAFaIaLSSf 295 (302)
.+|.|.|+.||++|
T Consensus 46 ~nP~eLllaala~C 59 (143)
T 2ql8_A 46 TNPEQLLGLSLSTC 59 (143)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 69999999999876
No 7
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=18.91 E-value=1.4e+02 Score=24.46 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.9
Q ss_pred EEEEEeeccCCeEEEEecCCCC
Q psy17674 262 IVLQFGRTSEDVFTMDYRYPLC 283 (302)
Q Consensus 262 iVLQFGKv~~d~F~lDf~yPlS 283 (302)
+....=.|+++.-++||+|||.
T Consensus 110 ~~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 110 IQAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEEECCCEEEEECCCcCC
Confidence 3444567899999999999996
No 8
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=18.30 E-value=62 Score=26.85 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.8
Q ss_pred CCHHHHHHHHHHcC
Q psy17674 282 LCPLQAFSIALSSF 295 (302)
Q Consensus 282 lS~lQAFaIaLSSf 295 (302)
.+|.|.|+.||++|
T Consensus 64 ~nP~ELllaalaaC 77 (166)
T 1lql_A 64 FGPLAALLSGLAAC 77 (166)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 69999999999876
No 9
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=17.02 E-value=1.7e+02 Score=24.96 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=28.5
Q ss_pred ccceEEEeCCCCCcEEEEEeec--------cCCeEEEEecCCCCHHHHHHHHHH
Q psy17674 248 VKNFQIIHDNDPEYIVLQFGRT--------SEDVFTMDYRYPLCPLQAFSIALS 293 (302)
Q Consensus 248 VKNFQLv~~~d~~~iVLQFGKv--------~~d~F~lDf~yPlS~lQAFaIaLS 293 (302)
-.+|.|+..+ .+.+|.+.-|- ++|.|.|++.--+- .||+|||+
T Consensus 154 ~~~f~I~~~~-~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D--~aliialv 204 (217)
T 1zxu_A 154 ERSCVVYAGE-SDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVD--YAFIASLV 204 (217)
T ss_dssp TTCCEEEETT-TCCEEEEEEEC--------CBCSEEEEECTTSB--HHHHHHHH
T ss_pred CCEEEEEECC-CCEEEEEEEeeeeccccccCCcEEEEEECCCCC--HHHHHHHH
Confidence 4688888653 24578777664 56999999932232 36766654
No 10
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=16.79 E-value=79 Score=24.92 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHcC
Q psy17674 282 LCPLQAFSIALSSF 295 (302)
Q Consensus 282 lS~lQAFaIaLSSf 295 (302)
.+|.|.|+.||++|
T Consensus 42 ~nP~eLllaala~C 55 (136)
T 2bjo_A 42 TNPEQLFAAGYAAC 55 (136)
T ss_dssp BCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 59999999999876
Done!