RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17674
         (302 letters)



>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score =  204 bits (519), Expect = 2e-65
 Identities = 101/134 (75%), Positives = 115/134 (85%)

Query: 169 DTNVLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECWNSKNMDNIIELHNKTPTW 228
           +TNVLGFKGPRKM+V++PGM   +ERV I P    ETL+  W +KN ++IIEL NKTP W
Sbjct: 132 ETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNEHETLLARWQNKNTESIIELQNKTPVW 191

Query: 229 NEDTQSYVLNFHGRVTQASVKNFQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAF 288
           N+DTQSYVLNFHGRVTQASVKNFQIIH NDP+YIV+QFGR +EDVFTMDY YPLC LQAF
Sbjct: 192 NDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAF 251

Query: 289 SIALSSFDSKLACE 302
           +IALSSFDSKLACE
Sbjct: 252 AIALSSFDSKLACE 265



 Score = 63.8 bits (155), Expect = 2e-12
 Identities = 31/48 (64%), Positives = 40/48 (83%)

Query: 121 VGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKK 168
           V +LE F L PA Q ++ KCRITRD+KG+DRG++PTYFLHL+R+ GKK
Sbjct: 7   VQDLEEFALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKK 54


>d3ec9a1 d.17.4.10 (A:10-139) Uncharacterized protein BTHI0051
           {Burkholderia thailandensis [TaxId: 57975]}
          Length = 130

 Score = 29.6 bits (65), Expect = 0.23
 Identities = 9/106 (8%), Positives = 22/106 (20%), Gaps = 7/106 (6%)

Query: 198 TPLEISETLIECWNSKNMDNIIELHNKTPTWNEDTQSYVLNFH-------GRVTQASVKN 250
           TP +I        +  +   ++        W E         +         V +   + 
Sbjct: 3   TPYQIVADHYAASDRHDPAAMMADIAPAIEWTEMAGFPCAGTYRSADEIVRNVFRRLGEE 62

Query: 251 FQIIHDNDPEYIVLQFGRTSEDVFTMDYRYPLCPLQAFSIALSSFD 296
           +                      ++  YR      +     +   D
Sbjct: 63  WDGYTFKLDALHDAGDTVIGVGRYSGTYRRTGKSFECRVAHVWRVD 108


>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 319

 Score = 28.7 bits (64), Expect = 0.86
 Identities = 31/165 (18%), Positives = 58/165 (35%), Gaps = 17/165 (10%)

Query: 112 LPIEMQGEVVGNLERFVLEPAAQKVSYKCRITRDRKGVDRGLYPTYFLHLERDYGKKDTN 171
           L  + + E + NL    LEPA ++             +D  ++  Y L      G    N
Sbjct: 82  LTEDDKKESINNLIENFLEPAGEEF------------IDELIF-RYLLFQGDSLGGTMRN 128

Query: 172 VLGFKGPRKMTVLIPGMTQSYERVSITPLEISETLIECW-NSKNMDNIIELHNKTPTWNE 230
           + G    +K+T  I         +    L+  +     W +    D  +E   K  +W  
Sbjct: 129 IAGALAQQKLTRAIIS-ALDIANIPYKWLDSRDKKYTNWMDKPEDDYELETFAKGISWTI 187

Query: 231 DTQSYVLNFHGRVTQASVKNFQI-IHDNDPEYIVLQFGRTSEDVF 274
           + +   L ++  V+    KN  I + + +PE    Q      + +
Sbjct: 188 NGKHRTLMYNITVSLVK-KNVDICLFNCEPEIYTPQKVHQQPEKY 231


>d1im3d_ b.1.18.5 (D:) Cytomegalovirus protein US2 {Human
           cytomegalovirus [TaxId: 10359]}
          Length = 95

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 117 QGEVVGNLERFVLEPAA 133
           +G +VGN+ RFV +P A
Sbjct: 20  RGSIVGNMSRFVFDPKA 36


>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
           mays) [TaxId: 4577]}
          Length = 289

 Score = 25.2 bits (55), Expect = 9.9
 Identities = 4/32 (12%), Positives = 9/32 (28%)

Query: 72  QDDEDDDDDDEDDIEQELSDISLHRGSHVISD 103
            +        + ++   L  +S   G     D
Sbjct: 92  DNATAAAAAVDQELASVLGTLSYVEGFAFQRD 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,093
Number of extensions: 49992
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 13
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)