BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17679
         (303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 14/150 (9%)

Query: 45  KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFED------RL 98
           +T+ LTG TGF+G+ +V +LLR       +  LVR +  +D + RL+  F+       R 
Sbjct: 74  RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRH 133

Query: 99  FWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMA 158
           F  L A+      ++  VAGD S P LGL +     L + V+++   AA V    + ++ 
Sbjct: 134 FKELAAD------RLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHEL- 186

Query: 159 VKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
              NV G   ++++A   K LK F +VSTA
Sbjct: 187 FGPNVAGTAELIRIALTTK-LKPFTYVSTA 215


>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
           Typhi
 pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
           Typhi
          Length = 359

 Score = 35.4 bits (80), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 48/173 (27%)

Query: 39  QEFYRDKTIFLTGGTGFMGK----------TVVEKLLRSCPHLKHIYLLVRPKKGKDIQE 88
           + F++ K +F+TG TGF G            +V+      P +  ++ +VR     D+ E
Sbjct: 4   KNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRL---NDLME 60

Query: 89  RLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAAT 148
               I + R F +LR+ + +F+ +                            IVFH AA 
Sbjct: 61  --SHIGDIRDFEKLRSSIAEFKPE----------------------------IVFHMAAQ 90

Query: 149 ----VRFDEHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTAFTHCPRERI 197
               + +++ IK     NV G   +L+  +++ ++KA V++++   +  RE +
Sbjct: 91  PLVRLSYEQPIK-TYSTNVMGTVHLLETVKQVGNIKAVVNITSDKCYDNREWV 142


>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
 pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
 pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
 pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
 pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Thymidine
           Diphosphate Bound
 pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
           (Rmlb) From Streptococcus Suis With Thymidine
           Diphosphate Bound
 pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
           (Rmlb) Enzyme
 pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
           (Rmlb) Enzyme
          Length = 348

 Score = 34.7 bits (78), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 41/173 (23%)

Query: 38  MQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDR 97
           M +F   K I +TGG GF+G   V  +  + P + H+ +L +     + +  L+AI  DR
Sbjct: 1   MSQF---KNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKLTYAGN-KANLEAILGDR 55

Query: 98  LFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKM 157
                          V  V GD +   L     D+  L  + + + H AA    D  +  
Sbjct: 56  ---------------VELVVGDIADAEL----VDK--LAAKADAIVHYAAESHNDNSLND 94

Query: 158 A---VKINVCGVQAMLQLAREMKDLKAFVHVSTAFTHCPRERIDEEFYPVPLK 207
               +  N  G   +L+ AR+  D++ F HVST          DE +  +PL+
Sbjct: 95  PSPFIHTNFIGTYTLLEAARKY-DIR-FHHVST----------DEVYGDLPLR 135


>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
 pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
          Length = 317

 Score = 32.0 bits (71), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 184 HVSTAFTHCPRERIDEEFYPVPLKYENLIQLISETGDEELSEMTPN 229
           H++ AF   PRE    + YP+   YE+++ +  + G+E  +   P+
Sbjct: 17  HIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPS 62


>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
           Pyrococcus Horikoshii Ot3
 pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
           Pyrococcus Horikoshii Ot3
          Length = 336

 Score = 31.2 bits (69), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 35/149 (23%)

Query: 47  IFLTGGTGFMGKTVVEKLLRSCPHLKHIYL-----LVRPKKGKDIQERLDAIFEDRLFWR 101
           + +TGG GF+G   +  +L   P  + I +        P   KD+++     F       
Sbjct: 6   LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTF------- 58

Query: 102 LRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHI---KMA 158
           ++ +V D+                         LV++V+ V H AA    D  I   ++ 
Sbjct: 59  VKGDVADYELV--------------------KELVRKVDGVVHLAAESHVDRSISSPEIF 98

Query: 159 VKINVCGVQAMLQLAREMKDLKAFVHVST 187
           +  NV G   +L+  R       FVHVST
Sbjct: 99  LHSNVIGTYTLLESIRRENPEVRFVHVST 127


>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
           (Medicago Sativa L.)
          Length = 322

 Score = 31.2 bits (69), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 23/144 (15%)

Query: 47  IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
           + +TGGTGF+G  +++ LL +  +  +  +   P++ +D+                   +
Sbjct: 4   VCVTGGTGFLGSWIIKSLLEN-GYSVNTTIRADPERKRDVS--------------FLTNL 48

Query: 107 PDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRF--DEHIKMAVKINVC 164
           P    K+     D S P         A  ++    +FH A+ + F   E  ++  K  V 
Sbjct: 49  PGASEKLHFFNADLSNP------DSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVD 102

Query: 165 GVQAMLQLAREMKDLKAFVHVSTA 188
           G   +L+     K +K F++ S+ 
Sbjct: 103 GALGILKACVNSKTVKRFIYTSSG 126


>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
          Quinone Oxidoreductase (Qor2) From Escherichia Coli
 pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
          Oxidoreductase Qor2 Complexed With Nadph From
          Escherichia Coli
          Length = 286

 Score = 30.8 bits (68), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQER 89
          I +TG TG +G  V+E L+++ P  + + ++  P K + +  +
Sbjct: 2  IAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQ 44


>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
           From Streptomyces Venezuelae With Nad And Tyd Bound
          Length = 337

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 26/146 (17%)

Query: 47  IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
           + +TGG GF+G   V +LL              P    D    LD++     +   RA +
Sbjct: 3   LLVTGGAGFIGSHFVRQLLAGA----------YPDVPADEVIVLDSL----TYAGNRANL 48

Query: 107 P--DFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMA---VKI 161
              D   ++  V GD    GL   E      ++ V+ + H AA    D  I  A    + 
Sbjct: 49  APVDADPRLRFVHGDIRDAGLLARE------LRGVDAIVHFAAESHVDRSIAGASVFTET 102

Query: 162 NVCGVQAMLQLAREMKDLKAFVHVST 187
           NV G Q +LQ A +   +   VHVST
Sbjct: 103 NVQGTQTLLQCAVDAG-VGRVVHVST 127


>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
           4,6- Dehydratase) From Streptomyces Venezuelae With Nad
           And Dau Bound
          Length = 337

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 59/146 (40%), Gaps = 26/146 (17%)

Query: 47  IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
           + +TGG GF+G   V +LL              P    D    LD++     +   RA +
Sbjct: 3   LLVTGGAGFIGSHFVRQLLAGA----------YPDVPADEVIVLDSL----TYAGNRANL 48

Query: 107 P--DFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMA---VKI 161
              D   ++  V GD    GL   E      ++ V+ + H AA    D  I  A    + 
Sbjct: 49  APVDADPRLRFVHGDIRDAGLLARE------LRGVDAIVHFAAESHVDRSIAGASVFTET 102

Query: 162 NVCGVQAMLQLAREMKDLKAFVHVST 187
           NV G Q +LQ A +   +   VHVST
Sbjct: 103 NVQGTQTLLQCAVDAG-VGRVVHVST 127


>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
 pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
          Length = 427

 Score = 30.0 bits (66), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 17/141 (12%)

Query: 48  FLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVP 107
            LTG TGF+G  ++E  L+   H   IY  +R    +    +L     D   +     V 
Sbjct: 73  LLTGATGFLGAYLIEA-LQGYSH--RIYCFIRADNEEIAWYKLXTNLND---YFSEETVE 126

Query: 108 DFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFH-GAATVRFDEHIKMAVKINVCGV 166
              S +  + GD           D   L +  + + H GA T  F +  +   K+NV G 
Sbjct: 127 XXLSNIEVIVGDFEC-------XDDVVLPENXDTIIHAGARTDHFGDDDEFE-KVNVQGT 178

Query: 167 QAMLQLAREMKDLKAFVHVST 187
             +++LA++       ++VST
Sbjct: 179 VDVIRLAQQHH--ARLIYVST 197


>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
 pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
 pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
 pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
 pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp
 pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp
 pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
          4,6-dehydratase In Complex With Nadp And Udp-glc
 pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
          4,6-dehydratase In Complex With Nadp And Udp-glc
 pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp-Gal
 pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
          4,6-Dehydratase In Complex With Nadp And Udp-Gal
          Length = 344

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 39 QEFYRDKTIFLTGGTGFMGKTVVEKLL 65
          Q    ++TI +TGGTG  GK  V K+L
Sbjct: 16 QNMLDNQTILITGGTGSFGKCFVRKVL 42


>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
 pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
           Reductase Domain
          Length = 508

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 21/143 (14%)

Query: 48  FLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVP 107
            LTG TGF+G  ++E  L+   H   IY  +R               E+  +++L   + 
Sbjct: 154 LLTGATGFLGAYLIEA-LQGYSH--RIYCFIRADN------------EEIAWYKLMTNLN 198

Query: 108 DFRSK--VSAVAGDCSLPGLGLSETDRATLVKQVNIVFH-GAATVRFDEHIKMAVKINVC 164
           D+ S+  V  +  +  +        D   L + ++ + H GA T  F +  +   K+NV 
Sbjct: 199 DYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFE-KVNVQ 257

Query: 165 GVQAMLQLAREMKDLKAFVHVST 187
           G   +++LA++       ++VST
Sbjct: 258 GTVDVIRLAQQHH--ARLIYVST 278


>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
           Helical Peptide Derived From The Goloco Motif Of Rgs14
 pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
           Helical Peptide Derived From The Goloco Motif Of Rgs14
          Length = 327

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 114 SAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLA 173
           S  A +  L  LG  E+ ++T+VKQ+ I+     +    +  K  V  N   +Q+++ + 
Sbjct: 1   SNAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAII 58

Query: 174 REMKDLK 180
           R M  LK
Sbjct: 59  RAMGRLK 65


>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
 pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
 pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
 pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
 pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
 pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
          Length = 264

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 187 TAFTHCPRERIDEEFYPVPLKYENLIQLISE-----TGDEELSEMTPNRVHISGTGWIDN 241
           + F H  R  + + F  V  K  +L  +I E      GD  ++ +  N V I G  W D 
Sbjct: 28  SIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTI-GDEWADE 86

Query: 242 VYGPIGMLVGIATGVLHT----HLINLNTVTDMVPVDLVVNSMISIAWSIGESGKVEKA 296
             G +G + G       T    H+  + TV + +  D     +I  AW++GE  K+  A
Sbjct: 87  -NGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALA 144


>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
           For The Rgs14 Goloco Motif.
 pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
           For The Rgs14 Goloco Motif
          Length = 328

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 114 SAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLA 173
           +A A +  L  LG  E+ ++T+VKQ+ I+     +    +  K  V  N   +Q+++ + 
Sbjct: 2   NAGAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAII 59

Query: 174 REMKDLK 180
           R M  LK
Sbjct: 60  RAMGRLK 66


>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Alf4 And Gdp
 pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Gdp
 pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
           To Gdp
          Length = 356

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 108 DFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGVQ 167
           + R      A +  L  LG  E+ ++T+VKQ+ I+     +    +  K  V  N   +Q
Sbjct: 24  NLREDGEKAAREVKLLLLGAGESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQ 81

Query: 168 AMLQLAREMKDLK 180
           +++ + R M  LK
Sbjct: 82  SIIAIIRAMGRLK 94


>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
           Activated State: G42r Bound To Rgs14 Goloco
 pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
           Activated State: G42r Bound To Rgs14 Goloco
          Length = 328

 Score = 27.3 bits (59), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 114 SAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLA 173
           +A A +  L  LG  E+ ++T+VKQ+ I+     +    +  K  V  N   +Q+++ + 
Sbjct: 2   NAGAREVKLLLLGARESGKSTIVKQMKIIHEAGYSEEECKQYKAVVYSNT--IQSIIAII 59

Query: 174 REMKDLK 180
           R M  LK
Sbjct: 60  RAMGRLK 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.138    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,257,963
Number of Sequences: 62578
Number of extensions: 385750
Number of successful extensions: 1091
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 39
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)