RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17679
(303 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 183 bits (467), Expect = 1e-54
Identities = 66/303 (21%), Positives = 113/303 (37%), Gaps = 34/303 (11%)
Query: 26 PDDIPDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKD 85
D + P +T+ LTG TGF+G+ +V +LLR + LVR + +D
Sbjct: 56 DADTLATAVNLP-GPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED 114
Query: 86 IQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHG 145
+ RL+ F+ LR ++ VAGD S P LGL + L + V+++
Sbjct: 115 ARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDS 174
Query: 146 AATVRFDEHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTAFTHCPR--ERIDEEFYP 203
AA V + ++ NV G ++++A K LK F +VSTA E+
Sbjct: 175 AAMVNAFPYHEL-FGPNVAGTAELIRIALTTK-LKPFTYVSTADVGAAIEPSAFTEDADI 232
Query: 204 VPLKYENLIQLISETG-------DEEL----SEMTPNRVHI----------SGTGWIDNV 242
+ + G E L +++ V + S G ++
Sbjct: 233 RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMS 292
Query: 243 YGPIGMLVG-IATGVL-------HTHLINLNTVTDMVPVDLVVNSMISIAWSIGESGKVE 294
M++ +ATG+ + D +PV V ++ + + S
Sbjct: 293 DWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAG 352
Query: 295 KAI 297
A
Sbjct: 353 FAT 355
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 66.5 bits (163), Expect = 1e-12
Identities = 22/186 (11%), Positives = 45/186 (24%), Gaps = 49/186 (26%)
Query: 27 DDIPDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKH-IYLLVRPKKGKD 85
D+ P G + + G TG +G + + H + L+ RP
Sbjct: 3 DEQPLSRPGAHV-------KYAVLGATGLLGHHAARAIRAA----GHDLVLIHRPSSQIQ 51
Query: 86 IQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATL---VKQVNIV 142
L+ + D A L ++ ++ V
Sbjct: 52 RLAYLE---------------------PECRVAEM---------LDHAGLERALRGLDGV 81
Query: 143 FHGAATVRFD-EHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVST--AFTHCPRERIDE 199
A + V + + + + ++V + A P+
Sbjct: 82 IFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR-VPRILYVGSAYAMPRHPQGLPGH 140
Query: 200 EFYPVP 205
E
Sbjct: 141 EGLFYD 146
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 54.2 bits (131), Expect = 1e-08
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 30/154 (19%)
Query: 38 MQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQERLDAIFED 96
Q ++TI +TGGTG GK V K+L + + K I + R K ++ + +
Sbjct: 15 HQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELKQSEMAMEFN---DP 70
Query: 97 RLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAAT--VRFDEH 154
R+ + + +V D A+ G V+I H AA V E+
Sbjct: 71 RMRFFI-GDVRDLERLNYALEG--------------------VDICIHAAALKHVPIAEY 109
Query: 155 IKM-AVKINVCGVQAMLQLAREMKDLKAFVHVST 187
+ +K N+ G ++ + + + +ST
Sbjct: 110 NPLECIKTNIMGASNVINACLKNA-ISQVIALST 142
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 53.9 bits (130), Expect = 2e-08
Identities = 29/165 (17%), Positives = 51/165 (30%), Gaps = 41/165 (24%)
Query: 35 GTPMQEFY-----RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQER 89
G+ M + + + GG GF+G +V++LL + ++++
Sbjct: 18 GSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVV------------ 63
Query: 90 LDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRAT---LVKQVNIVFHGA 146
D L + VPD V TD A L + + VFH A
Sbjct: 64 ------DNLLSAEKINVPD-HPAVRFSETSI---------TDDALLASLQDEYDYVFHLA 107
Query: 147 A---TVRFDEHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
+ N + + + K LK V+ +
Sbjct: 108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAG 152
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 52.0 bits (125), Expect = 7e-08
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 31/181 (17%)
Query: 15 LELLGEKSFGSPDDIPDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHI 74
L L+G + DI +E +Q + GG G +G+ V +++ + P + +
Sbjct: 8 LSLIGRDTELFHQDINANE--KELQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNP--QKL 63
Query: 75 YLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRAT 134
+++ DI E + + E L +R+ A D +
Sbjct: 64 HVV-------DISE--NNMVE--LVRDIRSSFGYINGDFQTFALDI-------GSIEYDA 105
Query: 135 LVKQ---VNIVFHGAAT--VRFDEH---IKMAVKINVCGVQAMLQLAREMKDLKAFVHVS 186
+K + V + +A VR ++ + + +NV +Q + + K + VS
Sbjct: 106 FIKADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAG-AKKYFCVS 164
Query: 187 T 187
T
Sbjct: 165 T 165
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 50.0 bits (120), Expect = 2e-07
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 44/168 (26%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
K + +TG G +G+ + E+L L RL D +
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEIL-----------------RLA----DL------S 36
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRAT---LVKQVNIVFHGAATVRFDEHIKMAVKI 161
+ V D D +V + + H + ++ + ++
Sbjct: 37 PLDPAGPNEECVQCDL---------ADANAVNAMVAGCDGIVHLGG-ISVEKPFEQILQG 86
Query: 162 NVCGVQAMLQLAREMKDLKAFVHVSTAFTH--CPR-ERIDEEFYPVPL 206
N+ G+ + + AR V S+ T P+ ER+ + P
Sbjct: 87 NIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARPD 133
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 50.0 bits (120), Expect = 3e-07
Identities = 36/283 (12%), Positives = 80/283 (28%), Gaps = 80/283 (28%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
I +TG +G +G +V L I DI V
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIAS--------DI-------------------V 34
Query: 107 PDFRSKVSAVAGDCSLPGLGLSETDRATLVK-----QVNIVFHGAA--TVRFDEHIKMAV 159
+ + D ++R + + ++ +FH A + + ++ +A
Sbjct: 35 QRDTGGIKFITLDV---------SNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAY 85
Query: 160 KINVCGVQAMLQLAREMKDLKAFVHVSTA---FTHCPRERIDEEFYPVPL------KY-- 208
K+N+ G +L+ A++ + ++ V ST P+ ++ P K
Sbjct: 86 KVNMNGTYNILEAAKQHR-VEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAA 144
Query: 209 ENLIQLISETGDEELSEMTPNRVHISGTGW-IDNVYGPIGMLVGIATGVL---------- 257
E L Q E + + T
Sbjct: 145 ELLGQYYYEKFG------------LDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKR 192
Query: 258 --HTHLINLNTVTDMVPVDLVVNSMISIAWSIGESGKVEKAIN 298
+ + N M+ + + +++ + + + + N
Sbjct: 193 EKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYN 235
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 48.9 bits (117), Expect = 7e-07
Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 44/168 (26%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
+ +TG G +G + L ++ D +
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLS---------------------DIVDLGAAE 41
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATL---VKQVNIVFHGAATVRFDEHIKMAVKI 161
+ VA D D + VK + + H V + ++
Sbjct: 42 AHEEI------VACDL---------ADAQAVHDLVKDCDGIIHLGG-VSVERPWNDILQA 85
Query: 162 NVCGVQAMLQLAREMKDLKAFVHVSTAFT---HCPRERIDEEFYPVPL 206
N+ G + + AR V S+ T + RID E P
Sbjct: 86 NIIGAYNLYEAARN-LGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPD 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 1e-06
Identities = 59/331 (17%), Positives = 110/331 (33%), Gaps = 111/331 (33%)
Query: 24 GSPDDIPDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKG 83
G+ DD +E +++ Y+ + + F +T+ +L+R+ + ++ +G
Sbjct: 164 GNTDD-YFEE----LRDLYQTYHVLVGDLIKFSAETL-SELIRTTLDAEKVF-----TQG 212
Query: 84 KDIQERLDAIFEDRLFWRLR--AEVPD---FRSKVSAVAGDCSLPGLGLSE------TDR 132
+I E W L + PD S + S P +G+ + T +
Sbjct: 213 LNILE-----------W-LENPSNTPDKDYLLS--IPI----SCPLIGVIQLAHYVVTAK 254
Query: 133 ATLV--KQVNIVFHGAATVRFDEHIKMAVKINVCG-VQAMLQLAREMKDLKAF---VHVS 186
++ GA + + AV I ++ R+ + F V
Sbjct: 255 LLGFTPGELRSYLKGATGH--SQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIGVRCY 311
Query: 187 TAFTHC---PRERID----EEFYPVP------LKYENLIQLISETGDEELSEMTPNRVHI 233
A+ + P D E P P L E + +++T + L +V I
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-NSHLPA--GKQVEI 368
Query: 234 S---GTGWIDN--VYGPIGMLVGIATGV---------------------------L---- 257
S G N V GP L G+ + L
Sbjct: 369 SLVNGA---KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 258 --HTHLINLNTVTDMVPVDLVVNSMISIAWS 286
H+HL L +D++ DLV N +++++
Sbjct: 426 PFHSHL--LVPASDLINKDLVKN---NVSFN 451
Score = 42.7 bits (100), Expect = 1e-04
Identities = 52/319 (16%), Positives = 91/319 (28%), Gaps = 119/319 (37%)
Query: 33 EIGTPM-QEFYRD----KTIF------LTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPK 81
E G M + Y+ + ++ GF +V + P ++ + +
Sbjct: 1628 EQG--MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV----INNP--VNLTIHFGGE 1679
Query: 82 KGKDIQERLDA-IFEDRLFWRLRAE--VPDFRSKVSAV--AGDCSLPGLGLSETDRATLV 136
KGK I+E A IFE + +L+ E + ++ + L LS T
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL----LSATQFT--- 1732
Query: 137 KQVNIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLARE--MKDLKAFV--HVS----TA 188
Q + ++ A + + + A H S A
Sbjct: 1733 -QPAL---------------TLMEK------AAFEDLKSKGLIPADATFAGH-SLGEYAA 1769
Query: 189 FTHCPRERIDEEFYPVPLKYENLIQLISETG---------DEELSEM------TPNRVHI 233
V + E+L++++ G DE P RV
Sbjct: 1770 LASLAD---------V-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAA 1819
Query: 234 SGTG-----WIDNVYGPIGMLVGIATGVLHTHLINLNTVTDMVPVDLVVNSMISIAWSIG 288
S + ++ V G LV I N N V N A G
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIV---------NYN-----VE-----NQQYVAA---G 1857
Query: 289 ESGKVEKAIN-----KIEN 302
+ ++ N K++
Sbjct: 1858 DLRALDTVTNVLNFIKLQK 1876
Score = 31.2 bits (70), Expect = 0.49
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 36/86 (41%)
Query: 83 GKDIQ-------ERL-DAIFEDRLFWRLRAEVP-----DFRSKVSAVAGDCSLPGLGLSE 129
G D++ ER+ D I + W + DF G GLG
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF--------GPGGASGLG--- 513
Query: 130 TDRATLVKQ------VNIVFHGAATV 149
L + V ++ A T+
Sbjct: 514 ----VLTHRNKDGTGVRVIV--AGTL 533
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 46.9 bits (112), Expect = 3e-06
Identities = 37/156 (23%), Positives = 54/156 (34%), Gaps = 46/156 (29%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-----PKKGKDIQERLDAIFEDR 97
+ +TG GF+ VVE+L L+H Y VR K ++Q+R DA + R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQL------LEHGY-KVRGTARSASKLANLQKRWDAKYPGR 62
Query: 98 LFWRLRAEVPDFRSKVS---AVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFD-- 152
A V D + + + G V H A+ V F
Sbjct: 63 F---ETAVVEDMLKQGAYDEVIKG--------------------AAGVAHIASVVSFSNK 99
Query: 153 --EHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVS 186
E + A+ G L+ A +K FV S
Sbjct: 100 YDEVVTPAIG----GTLNALRAAAATPSVKRFVLTS 131
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 45.5 bits (108), Expect = 6e-06
Identities = 25/169 (14%), Positives = 47/169 (27%), Gaps = 40/169 (23%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQERLDAIFEDRLFWRLR 103
K I L G +GF+G ++ + L + +VR P+K K E L +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNR-GF--EVTAVVRHPEKIKIENEHLKVK---------K 52
Query: 104 AEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINV 163
A+V G + V + I +
Sbjct: 53 ADVSSLDEVCEVCKG--------------------ADAVISAFNPGWNNPDI---YDETI 89
Query: 164 CGVQAMLQLAREMKDLKAFVHVSTAFTHCPRE---RIDEEFYPVPLKYE 209
++ ++ + F+ V A + +D P +
Sbjct: 90 KVYLTIIDGVKKAG-VNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPG 137
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 45.6 bits (109), Expect = 8e-06
Identities = 29/144 (20%), Positives = 42/144 (29%), Gaps = 36/144 (25%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
I +TGGTGF+G+ VVE + G I R
Sbjct: 3 LKIAVTGGTGFLGQYVVESIK---------------NDGNTP------IILTRSIGNKAI 41
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVC 164
++ D + D + V+ V H AAT I N
Sbjct: 42 NDYEY------RVSD-------YTLEDLINQLNDVDAVVHLAATRGSQGKISE-FHDNEI 87
Query: 165 GVQAMLQLAREMKDLKAFVHVSTA 188
Q + E ++ V+ ST
Sbjct: 88 LTQNLYDACYE-NNISNIVYASTI 110
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 42.5 bits (100), Expect = 6e-05
Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 30/156 (19%)
Query: 37 PMQEFY-RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFE 95
++F ++K++F+ G +G G+ +++++L + L+ R + + +A
Sbjct: 10 LREDFRMQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGR----RKLTFDEEAYKN 64
Query: 96 DRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHI 155
+ EV DF D A+ + ++ F T R
Sbjct: 65 ------VNQEVVDFE-----------------KLDDYASAFQGHDVGFCCLGTTRGKAGA 101
Query: 156 KMAVKINVCGVQAMLQLAREMKDLKAFVHVSTAFTH 191
+ V+++ V +LA+ K F +S+
Sbjct: 102 EGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGAD 136
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 42.3 bits (100), Expect = 6e-05
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
K + L G TG G+ +++++L P L + R + + L +L
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDG 64
Query: 105 EV 106
+
Sbjct: 65 SI 66
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 42.5 bits (101), Expect = 8e-05
Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 35/153 (22%)
Query: 38 MQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDR 97
MQ I +TGG GF+G + L+ G+++ D
Sbjct: 1 MQRNTLKHRILITGGAGFIGGHLARALV---------------ASGEEV------TVLDD 39
Query: 98 LFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAA--TVRFDEHI 155
L P L L E D + V +V+H A+ +V
Sbjct: 40 LRV-------PPMIPPEGTGKFLEKPVLELEERD----LSDVRLVYHLASHKSVPRSFKQ 88
Query: 156 KMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
+ NV + +L L + V ST
Sbjct: 89 PLDYLDNVDSGRHLLALCTS-VGVPKVVVGSTC 120
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 42.7 bits (101), Expect = 8e-05
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 25/151 (16%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYL--LVRPKKGKDIQERLDAIFEDRLFW 100
++TI +TGG GF+G + + P K + L + + F++
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--- 65
Query: 101 RLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAA---TVRFDEHIKM 157
F+ +V +A D + P R + +FH AA T ++ + M
Sbjct: 66 ------IGFKGEV--IAADINNP-----LDLRRLEKLHFDYLFHQAAVSDTTMLNQELVM 112
Query: 158 AVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
N +L++AR K ++ S+A
Sbjct: 113 KT--NYQAFLNLLEIARSKK--AKVIYASSA 139
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 42.4 bits (100), Expect = 1e-04
Identities = 31/173 (17%), Positives = 54/173 (31%), Gaps = 38/173 (21%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAE 105
I + G G +G+ + ++L++ G E+ I D A
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVK------------DGSLGGKPVEKFTLI--DVFQPEAPAG 61
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVK----QVNIVFHGAA--TVRFDEHIKMAV 159
V A A D + K + +++FH AA + +
Sbjct: 62 FSG---AVDARAADL---------SAPGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGY 109
Query: 160 KINVCGVQAMLQLARE----MKDLKAFVHVSTA--FTHCPRERIDEEFYPVPL 206
+IN+ G + + R V S+ F I +EF+ PL
Sbjct: 110 RINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPL 162
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 41.9 bits (99), Expect = 1e-04
Identities = 42/223 (18%), Positives = 72/223 (32%), Gaps = 67/223 (30%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYL---LVRPKKGKDIQERLDAIFEDRLF 99
+ I +TGG GF+G +V+ L I + L K ++ + A + D+
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMDKE- 101
Query: 100 WRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAA---TVRFDEHIK 156
DF ++ A V +FH A T +D
Sbjct: 102 --------DFLIQIMA-----------------GEEFGDVEAIFHEGACSSTTEWDGKYM 136
Query: 157 MAVKINVCGVQAMLQLAREMKDLKAFVHVSTAFT--HCPRERIDEEFYPVPL------KY 208
M N + +L E + F++ S+A T + I+ Y PL K+
Sbjct: 137 M--DNNYQYSKELLHYCLERE--IPFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKF 192
Query: 209 --ENLIQLISETGDEELSEMTPNRVHISGTGWID----NVYGP 245
+ ++ I + + + NVYGP
Sbjct: 193 LFDEYVRQILPEANSQ---------------IVGFRYFNVYGP 220
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 2e-04
Identities = 42/265 (15%), Positives = 86/265 (32%), Gaps = 68/265 (25%)
Query: 9 KYFTDPLELLGEKSFGSPDDIPDDEIGTPMQEFYRDKTIF-----LTGGT-----GFMGK 58
D L + E S + + E ++ + ++F + + K
Sbjct: 349 HVNCDKLTTIIESSL---NVLEPAE----YRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 59 TVVEKLLRSCPHLKHIYLLV--RPKKGK----DIQERLDAIFEDRLFWRLRAEVPD-FRS 111
+ V ++ H Y LV +PK+ I L E+ L + D +
Sbjct: 402 SDVMVVVNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEY--ALHRSIVDHYNI 455
Query: 112 KVSAVAGDCSLPG--------LG--LSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKI 161
+ + D P +G L + + +VF RF + KI
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFRF-----LEQKI 507
Query: 162 -----NVCGVQAMLQLAREMKDLKAFVHVSTAFTHCPR--ERID--EEFYP------VPL 206
++L +++K K ++ + P+ ++ +F P +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYI-----CDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 207 KYENLIQLISETGDEELSEMTPNRV 231
KY +L+++ DE + E +V
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 38.3 bits (88), Expect = 0.003
Identities = 37/281 (13%), Positives = 77/281 (27%), Gaps = 98/281 (34%)
Query: 31 DDEIGTPMQEFYRD-KTIFLTGGTGFMGKTVVEKLLR---SCPHLKHIYLLVRPKKGKDI 86
D E G Q Y+D ++F V+ + + S + HI KD
Sbjct: 8 DFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII------MSKDA 60
Query: 87 QERLDAIFEDRLFWRLR-------------AEVPDFRSKVSAVAGDCSLPGLGLSETDRA 133
RLFW L +++ +S + + P +
Sbjct: 61 VSGTL-----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-----MTR 110
Query: 134 TLVKQVNIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLAREMKDLKA----FVH----- 184
++Q + +++ K NV +Q L+L + + +L+ +
Sbjct: 111 MYIEQRDRLYNDNQVFA---------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 185 -------------------------VSTAFTHCPRE----------RIDEEFYPVPLKYE 209
++ + P +ID +
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 210 NLIQLISETGDEELSEMTPNRVH-----ISGTGWIDNVYGP 245
N+ I + EL + ++ + + + NV
Sbjct: 222 NIKLRI-HSIQAELRRLLKSKPYENCLLV-----LLNVQNA 256
Score = 34.1 bits (77), Expect = 0.071
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 22/72 (30%)
Query: 30 PDDEIGTPMQEFYRDKTIFLTGGTGFMGKTV-VEKLLRSCPHLKHIYLLVRPKKGKDIQE 88
P ++ + E K + + G G GKT + S +Q
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLS----------------YKVQC 178
Query: 89 RLDAIFEDRLFW 100
+ + ++FW
Sbjct: 179 K----MDFKIFW 186
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 40.6 bits (95), Expect = 3e-04
Identities = 22/171 (12%), Positives = 42/171 (24%), Gaps = 48/171 (28%)
Query: 24 GSPDDIPDDEIGTPMQEFYRD-KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKK 82
GS G F K + + G G + + V+ +L L R
Sbjct: 2 GSSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQP- 58
Query: 83 GKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATL---VKQV 139
++ + + GD + A L ++
Sbjct: 59 -----AKIHKPYPTN---------------SQIIMGDV---------LNHAALKQAMQGQ 89
Query: 140 NIVFHGAATVRFDEHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTAFT 190
+IV+ D + A + D+K + V +
Sbjct: 90 DIVYANLTGEDLDIQANSVIA------------AMKACDVKRLIFVLSLGI 128
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 40.7 bits (96), Expect = 3e-04
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 45/160 (28%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDI----------QERLDA 92
+ K +TG GF+G ++E LL K + + Q LD
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLL---------------KLDQKVVGLDNFATGHQRNLDE 70
Query: 93 IFEDRLFWRLRAEVPDFRSKVSAVAGD-CSLPGLGLSETDRATLVKQVNIVFHGAATVRF 151
+ S + GD +L V+ V H AA
Sbjct: 71 V--------RSLVSEKQWSNFKFIQGDIRNLDDC-------NNACAGVDYVLHQAALGSV 115
Query: 152 DEHIK---MAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
I + N+ G ML AR+ K +++F + +++
Sbjct: 116 PRSINDPITSNATNIDGFLNMLIAARDAK-VQSFTYAASS 154
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 39.8 bits (93), Expect = 5e-04
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 16/144 (11%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQERLDAIFEDRLFWRLR 103
T+ +TG +G G+ V +KL LVR + + I D
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVF---------I 54
Query: 104 AEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINV 163
++ D S A G +L + T +K G E + +++
Sbjct: 55 GDITDADSINPAFQGIDAL----VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDW 110
Query: 164 CGVQAMLQLAREMKDLKAFVHVST 187
G + + A+ +K V V +
Sbjct: 111 IGQKNQIDAAKVAG-VKHIVVVGS 133
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 39.2 bits (92), Expect = 7e-04
Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 39/159 (24%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQERLDAIFEDRLFWRLRAE 105
IF+ G TG +GK++++ L + + IY R ++
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTT-DY--QIYAGARKVEQVPQYNN----------------- 42
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCG 165
V AV D + + + A + ++ + + + + K +K+++ G
Sbjct: 43 -------VKAVHFD-----VDWTPEEMAKQLHGMDAIINVSGSGG-----KSLLKVDLYG 85
Query: 166 VQAMLQLAREMKDLKAFVHVSTAFTHCPRERIDEEFYPV 204
++Q A + + +K F+ +ST F+ P + I F +
Sbjct: 86 AVKLMQAAEKAE-VKRFILLSTIFSLQPEKWIGAGFDAL 123
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 38.9 bits (90), Expect = 0.001
Identities = 23/153 (15%), Positives = 47/153 (30%), Gaps = 34/153 (22%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLR--SCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRL 102
+ G TG +G ++ E L + +Y + R R
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR---------------------RT 40
Query: 103 RAEVPDFRSKVSAVAGDCSLPGLGLSETDRATL--VKQVNIVFHGAATVRFDEHIKMAVK 160
R + + ++ V D + + +A L + V VF+ R E + +
Sbjct: 41 RPAWHE-DNPINYVQCD-----ISDPDDSQAKLSPLTDVTHVFYVTWANRSTE--QENCE 92
Query: 161 INVCGVQAMLQ-LAREMKDLKAFVHVSTAFTHC 192
N + +L + +LK + +
Sbjct: 93 ANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYM 125
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus
horikoshii}
Length = 336
Score = 38.6 bits (91), Expect = 0.002
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 130 TDRA---TLVKQVNIVFHGAATVRFDEHIKMA---VKINVCGVQAMLQLAREMKDLKAFV 183
D LV++V+ V H AA D I + NV G +L+ R FV
Sbjct: 64 ADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFV 123
Query: 184 HVST 187
HVST
Sbjct: 124 HVST 127
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 37.7 bits (88), Expect = 0.002
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 41/163 (25%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
K I + G TG G T + + +++ + + +LVR RL +
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAG-Y--EVTVLVRDS------SRLPSEGPR-------- 46
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATL---VKQVNIVFHGAATVRFDEHIKMAVKI 161
V GD A + V + V R D +
Sbjct: 47 -------PAHVVVGDV---------LQAADVDKTVAGQDAVIV-LLGTRNDLS---PTTV 86
Query: 162 NVCGVQAMLQLAREMKDLKAFVHVSTAFTHCPRERIDEEFYPV 204
G + ++ + + V ++AF ++ V
Sbjct: 87 MSEGARNIVAAMKA-HGVDKVVACTSAFLLWDPTKVPPRLQAV 128
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 38.0 bits (89), Expect = 0.002
Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 47/157 (29%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-----PKKGKDIQE--RLDAIFEDR 97
KT + GGTGF+ +V+ L L+ Y V P K + L + + +
Sbjct: 10 KTACVVGGTGFVASLLVKLL------LQKGY-AVNTTVRDPDNQKKVSHLLELQELGDLK 62
Query: 98 LFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFD----- 152
+F RA++ D S + +AG + VFH A V F
Sbjct: 63 IF---RADLTDELSFEAPIAG--------------------CDFVFHVATPVHFASEDPE 99
Query: 153 -EHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
+ IK A++ GV +++ K +K + S+A
Sbjct: 100 NDMIKPAIQ----GVVNVMKACTRAKSVKRVILTSSA 132
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 38.0 bits (89), Expect = 0.003
Identities = 29/156 (18%), Positives = 46/156 (29%), Gaps = 45/156 (28%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKG-----KDIQERLDAIFEDRLF 99
+ +TGG GF+G + L L L R G + + F
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK--GATDNLHWLSSLGNFEF----- 54
Query: 100 WRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVK-----QVNIVFHGAATVRFDEH 154
V GD ++ + + + FH A V
Sbjct: 55 ----------------VHGDI---------RNKNDVTRLITKYMPDSCFHLAGQVAMTTS 89
Query: 155 IK---MAVKINVCGVQAMLQLAREMKDLKAFVHVST 187
I M +INV G +L+ R+ ++ ST
Sbjct: 90 IDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST 125
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 37.6 bits (87), Expect = 0.003
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 27/115 (23%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
I L G TG++G+ V + L +LLVR E+ + F A
Sbjct: 5 SRILLIGATGYIGRHVAKASLDLGH---PTFLLVRESTASSNSEKAQLLES---FKASGA 58
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATLV---KQVNIVFHGAATVRFDEHIK 156
+ V G D A+LV K V++V +++ + +
Sbjct: 59 NI---------VHGSI---------DDHASLVEAVKNVDVVISTVGSLQIESQVN 95
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 37.6 bits (87), Expect = 0.003
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDI 86
+ + GGTG++GK +V + Y+L RP+ +I
Sbjct: 5 SRVLIVGGTGYIGKRIVNASISLG---HPTYVLFRPEVVSNI 43
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 36.8 bits (85), Expect = 0.006
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
I + G TG +G+ +V +++ Y LVR E + + ++ +
Sbjct: 3 NKILILGPTGAIGRHIVWASIKAG---NPTYALVRKTITAANPETKEELIDNYQSLGVIL 59
Query: 105 EVPDFRSK---VSAVAG 118
D V A+
Sbjct: 60 LEGDINDHETLVKAIKQ 76
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 36.4 bits (85), Expect = 0.008
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 55/176 (31%)
Query: 45 KTIFLTGGTGFMGKTVVEKLL----------RSCPHLKHIYLLVRPKKGKDIQERLDAIF 94
+ +TGGTGF+G +++ LL R+ P K + G E+L
Sbjct: 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGAS--EKL---- 55
Query: 95 EDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRF--- 151
F A++ + S +A+ G +FH A+ + F
Sbjct: 56 --HFF---NADLSNPDSFAAAIEG--------------------CVGIFHTASPIDFAVS 90
Query: 152 ---DEHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA----FTHCPRERIDEE 200
+ K V G +L+ K +K F++ S+ F ++ +DE
Sbjct: 91 EPEEIVTKRTVD----GALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDES 142
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 35.8 bits (82), Expect = 0.010
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAE 105
I + G G + + + LL HI L R K + E +D +R+ +
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPPEIIDH---ERVTV-IEGS 60
Query: 106 VPDFRSKVSAVAG-DCSLPGLGLSETDRATLVKQVN 140
+ AV + G S +D A++VK ++
Sbjct: 61 FQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALS 96
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 36.1 bits (84), Expect = 0.011
Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 49/162 (30%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDI----------QERLDA 92
KT +TG GF+G ++EKLL K + + Q LD
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLL---------------KLNQVVIGLDNFSTGHQYNLD- 67
Query: 93 IFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRAT---LVKQVNIVFHGAA-- 147
E + S+ + GD D T ++K V+ V H AA
Sbjct: 68 --EVKTLVSTEQ-----WSRFCFIEGDI---------RDLTTCEQVMKGVDHVLHQAALG 111
Query: 148 TVRFD-EHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
+V N+ G +L A+ +++F + +++
Sbjct: 112 SVPRSIVDPITTNATNITGFLNILHAAKN-AQVQSFTYAASS 152
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 35.7 bits (83), Expect = 0.015
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 15/90 (16%)
Query: 110 RSKVSAVAGDCSLPGLGLSE---TDRATLVKQV-----NIVFHGAATVRFD---EHIKMA 158
++ AV + D + + +++ H AA R D A
Sbjct: 24 QNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAA 83
Query: 159 VKINVCGVQAMLQLAREMKDLKA-FVHVST 187
++NV LA+E + A +++S+
Sbjct: 84 SQLNVDASGN---LAKEAAAVGAFLIYISS 110
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 35.6 bits (82), Expect = 0.017
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 39 QEFYRDKTIFLTGGTGFMG 57
F++ K +F+TG TGF G
Sbjct: 4 NSFWQGKRVFVTGHTGFKG 22
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 35.0 bits (81), Expect = 0.017
Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 36/159 (22%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQERLDAIFEDRLFWRLRAE 105
+ + G G + + ++ +L H +VR ++G +++E
Sbjct: 24 VLVVGANGKVARYLLSELKNK-GH--EPVAMVRNEEQGPELRE----------------- 63
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCG 165
R V + E D + ++ V AA + I++ G
Sbjct: 64 ----RGASDIVVAN--------LEEDFSHAFASIDAVVF-AAGSGPHTGADKTILIDLWG 110
Query: 166 VQAMLQLAREMKDLKAFVHVSTAFTHCPRERIDEEFYPV 204
+Q A + + +K F+ VS+ T ++
Sbjct: 111 AIKTIQEAEK-RGIKRFIMVSSVGTV-DPDQGPMNMRHY 147
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 35.3 bits (82), Expect = 0.017
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 35/148 (23%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
I + G G +G + +KL + +++ DI++ + F +
Sbjct: 3 PKILIIGACGQIGTELTQKLRKLY-GTENVIAS-------DIRKLNTDVVNSGPFEVV-- 52
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATLVK--QVNIVFHGAA--TVRFDEHIKMAVK 160
DF LV+ ++ ++ AA + +++ A
Sbjct: 53 NALDFN--------------------QIEHLVEVHKITDIYLMAALLSATAEKNPAFAWD 92
Query: 161 INVCGVQAMLQLAREMKDLKAFVHVSTA 188
+N+ + +L LA+ K +K S+
Sbjct: 93 LNMNSLFHVLNLAKA-KKIKKIFWPSSI 119
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 35.4 bits (81), Expect = 0.018
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
+ + G TGF+G+ V L + + Y+L RP + ++ ED+ +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAH---RPTYILARPGPRSPSKAKIFKALEDKGAIIVYG 67
Query: 105 EVPDFRSKVSAVAG 118
+ + + +
Sbjct: 68 LINEQEAMEKILKE 81
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 35.3 bits (81), Expect = 0.018
Identities = 24/142 (16%), Positives = 45/142 (31%), Gaps = 50/142 (35%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
I +TG GF+GK + L + H HI+ + R K ++++
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDH--HIFEVHRQTKEEELES------------------ 42
Query: 107 PDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGV 166
+ + + + H A R EH K NV +
Sbjct: 43 ----------------------------ALLKADFIVHLAGVNRP-EHDKEFSLGNVSYL 73
Query: 167 QAMLQLAREMKDLKAFVHVSTA 188
+L + K + +S++
Sbjct: 74 DHVLDILTRNT-KKPAILLSSS 94
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 35.6 bits (82), Expect = 0.023
Identities = 31/188 (16%), Positives = 52/188 (27%), Gaps = 42/188 (22%)
Query: 19 GEKSFGSPDDIPDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLV 78
E+ P G K+ +TGG G G + + L + + L
Sbjct: 1859 EEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLR--GAQKLVLTS 1916
Query: 79 RPKKGKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDR---ATL 135
R Q R E +V + + +L
Sbjct: 1917 RSGIRTGYQA------------RQVREWRRQGVQVLVSTSNA---------SSLDGARSL 1955
Query: 136 VKQVNI------VFHGAATVRFD--------EHIKMAVKINVCGVQAMLQLAREM-KDLK 180
+ + VF+ A +R D E + K G + ++ RE +L
Sbjct: 1956 ITEATQLGPVGGVFNLAMVLR-DAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELD 2014
Query: 181 AFVHVSTA 188
FV S+
Sbjct: 2015 YFVIFSSV 2022
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD;
1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A*
1ket_A* 1kep_A*
Length = 348
Score = 34.8 bits (81), Expect = 0.026
Identities = 37/155 (23%), Positives = 52/155 (33%), Gaps = 46/155 (29%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDI------QERLDAIFEDRL 98
K I +TGG GF+G V + + P + L D + L+AI DR
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL--------DKLTYAGNKANLEAILGDR- 55
Query: 99 FWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRAT---LVKQVNIVFHGAATVRFDEHI 155
V V GD D L + + + H AA D +
Sbjct: 56 --------------VELVVGDI---------ADAELVDKLAAKADAIVHYAAESHNDNSL 92
Query: 156 KMA---VKINVCGVQAMLQLAREMKDLKAFVHVST 187
+ N G +L+ AR+ F HVST
Sbjct: 93 NDPSPFIHTNFIGTYTLLEAARKYD--IRFHHVST 125
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 34.6 bits (80), Expect = 0.036
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 37/151 (24%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRL 102
+ I +TG GF+ + +L H + KK + + E + F +
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHE----GHYVIASDWKKNEHMTEDMFCD----EFHLV 79
Query: 103 RAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATV-----RFDEHIKM 157
V + KV + V+ VF+ AA + H +
Sbjct: 80 DLRVMENCLKV----------------------TEGVDHVFNLAADMGGMGFIQSNHSVI 117
Query: 158 AVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
+ N M++ AR + F + S+A
Sbjct: 118 -MYNNTMISFNMIEAARINGIKR-FFYASSA 146
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.1 bits (78), Expect = 0.038
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 38 MQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRP 80
M+E I + GGTG++G +V+ L+ Y+ RP
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLG---HPTYVFTRP 44
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 34.0 bits (79), Expect = 0.042
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 130 TDRA---TLVKQVNIVFHGAATVRFDEHIKMA---VKINVCGVQAMLQLAREMKDLKAFV 183
D ++ V+ + H AA D I A + NV G Q +LQ A + + V
Sbjct: 65 RDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD-AGVGRVV 123
Query: 184 HVST 187
HVST
Sbjct: 124 HVST 127
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 34.1 bits (79), Expect = 0.045
Identities = 37/180 (20%), Positives = 62/180 (34%), Gaps = 60/180 (33%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLL----------RSCPHLKHIYLLVRPKKGKDIQERLD- 91
+ +T+ +TG +GF+G +V +LL R P K ++ LD
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD------------PTNVKKVKHLLDL 51
Query: 92 AIFEDRL-FWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVR 150
E L W +A++ D S A+ G VFH A +
Sbjct: 52 PKAETHLTLW--KADLADEGSFDEAIKG--------------------CTGVFHVATPMD 89
Query: 151 FD------EHIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA----FTHCPRERIDEE 200
F+ E IK ++ G+ +++ K ++ V S+A DE
Sbjct: 90 FESKDPENEVIKPTIE----GMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDES 145
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 33.7 bits (78), Expect = 0.059
Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 40/168 (23%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYL---LVRPKKGKDIQERLDAIFEDRLFWRLR 103
I +TGG GF+G +V+ L I + L K ++ + A + D+
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMDKE----- 54
Query: 104 AEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAA---TVRFDEHIKMAVK 160
DF ++ A V +FH A T +D M
Sbjct: 55 ----DFLIQIMA-----------------GEEFGDVEAIFHEGACSSTTEWDGKYMMDN- 92
Query: 161 INVCGVQAMLQLAREMKDLKAFVHVSTAFT--HCPRERIDEEFYPVPL 206
N + +L E +++ F++ S+A T + I+ Y PL
Sbjct: 93 -NYQYSKELLHYCLE-REIP-FLYASSAATYGGRTSDFIESREYEKPL 137
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 33.8 bits (77), Expect = 0.062
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFE 95
+ I + GGTG++GK +V L ++ RP + E
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFS---HPTFIYARPLTPDSTPSSVQLREE 52
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 33.4 bits (77), Expect = 0.067
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQER 89
I LTG TG +G + + + + H+ H ++ VR +K D
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGVRNVEKVPDDWRG 44
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 33.6 bits (77), Expect = 0.068
Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 34/149 (22%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQ-ERLDAIFEDRLFWR 101
+ K + + G GF+G + +++L + ++ + D+Q +RL + +
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGM-------DMQTDRLGDLVKHERMHF 73
Query: 102 LRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAV-- 159
++ + V VK+ +++ A ++K +
Sbjct: 74 FEGDITINKEWV-------------------EYHVKKCDVILPLVAIATPATYVKQPLRV 114
Query: 160 -KINVCGVQAMLQLAREMKDLKAFVHVST 187
+++ +++ A + K V ST
Sbjct: 115 FELDFEANLPIVRSAVKYG--KHLVFPST 141
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.4 bits (77), Expect = 0.069
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 37/149 (24%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
K +F+TG G +G + E LL ++G + +D R R
Sbjct: 22 KKVFITGICGQIGSHIAELLL---------------ERGDKVVG-IDNFATGR-----RE 60
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRAT---LVKQVNI--VFHGAATVRFDEHIKMAV 159
+ D ++ V G D A L+ + V H AA+ + +
Sbjct: 61 HLKD-HPNLTFVEGSI---------ADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT 110
Query: 160 KINVCGVQAMLQLAREMKDLKAFVHVSTA 188
N G ++Q A++ ++ FV+ TA
Sbjct: 111 LTNCVGGSNVVQAAKK-NNVGRFVYFQTA 138
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 33.4 bits (77), Expect = 0.069
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQER 89
+I +TG TG +G V++ LL+ P I +VR +K + ++
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLADQ 45
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 32.9 bits (76), Expect = 0.098
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 109 FRSKVSAVAGDCSLPGLGLSE---TDRATLVKQV-----NIVFHGAATVRFD---EHIKM 157
+ + S G + TD L + +++ + AA D +
Sbjct: 20 LSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEK 79
Query: 158 AVKINVCGVQAMLQLAREMKDLKA-FVHVST 187
A KIN V+ + R K + + VH+ST
Sbjct: 80 AYKINAEAVRH---IVRAGKVIDSYIVHIST 107
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 33.1 bits (76), Expect = 0.10
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 35 GTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR 79
G+P+ T+ +TG G +G+ + L++ H + LVR
Sbjct: 145 GSPL-------TVAITGSRGLVGRALT-AQLQTGGH--EVIQLVR 179
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 32.3 bits (73), Expect = 0.13
Identities = 28/241 (11%), Positives = 63/241 (26%), Gaps = 58/241 (24%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEV 106
I + G TG G ++E+ H + +VR ++
Sbjct: 3 IGIIGATGRAGSRILEEAKNR-GH--EVTAIVRN----------------------AGKI 37
Query: 107 PDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVKINVCGV 166
++ + D + + + + N+V + + +V +
Sbjct: 38 TQTHKDINILQKD-------IFDLT-LSDLSDQNVVVDAYGISPDEA------EKHVTSL 83
Query: 167 QAMLQLAREMKDLKAFVHVSTAFTHCPRE---RIDEEFYPVPLKYENLIQLISETGDEEL 223
++ + + V A + E + E Y + ++ +
Sbjct: 84 DHLISVLNGTV-SPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEH-- 140
Query: 224 SEMTPNRVHISGTGWIDNVYGPIGMLVGIATGVLHTHLINLNTVTDMVPVDLVVNSMISI 283
+ H + W + G TG D + NS IS+
Sbjct: 141 -----LKSHQAEFSWT-YISPSAMFEPGERTGDYQ-------IGKDHLLFGSDGNSFISM 187
Query: 284 A 284
Sbjct: 188 E 188
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 32.5 bits (75), Expect = 0.14
Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 36/147 (24%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRA 104
I +TGG GF+G VV+KL + +I + D L
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLS----------------ESNEI-----VVI-DNLSSGNEE 39
Query: 105 EVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAVK---I 161
V + V D L+ D +K V+H AA + +
Sbjct: 40 FVNE---AARLVKAD-------LAADDIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRN 89
Query: 162 NVCGVQAMLQLAREMKDLKAFVHVSTA 188
NV +L+ R+ + V ST+
Sbjct: 90 NVLATYRLLEAMRK-AGVSRIVFTSTS 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.16
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 29/56 (51%)
Query: 81 KKG-KDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATL 135
K+ K +Q L +L+ D SA P L + +AT+
Sbjct: 19 KQALKKLQASL------KLY------ADD-----SA-------PALAI----KATM 46
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 31.6 bits (72), Expect = 0.26
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR 79
K + + GGTG G +V LL + ++ R
Sbjct: 6 KLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTR 38
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 31.6 bits (72), Expect = 0.33
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLR 66
K I +TGG GF+G + +KL+
Sbjct: 28 KRILITGGAGFVGSHLTDKLMM 49
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.1 bits (70), Expect = 0.35
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 47 IFLTGGTGFMGKTVVEKLLR 66
I + G TG G +V + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 31.4 bits (71), Expect = 0.35
Identities = 20/126 (15%), Positives = 36/126 (28%), Gaps = 28/126 (22%)
Query: 43 RDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRL 102
+ K + GTG +G L + L R ++ A + +
Sbjct: 118 KGKKAVVLAGTGPVGMRSAALLAGEG---AEVVLCGRK------LDKAQAAADS-----V 163
Query: 103 RAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVF-HGAATVRF--DEHIKMAV 159
V+ A + + + RA VK + VF GA + +
Sbjct: 164 NKRFK-----VNVTAAETA------DDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNES 212
Query: 160 KINVCG 165
I +
Sbjct: 213 SIEIVA 218
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 30.9 bits (71), Expect = 0.41
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 130 TDRATLVK-----QVNIVFHGAATVRFDEHIKMA---VKINVCGVQAMLQLAREMKDLKA 181
+ L V ++ + AA D I+ NV G +L+L ++ +K
Sbjct: 85 QNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK- 143
Query: 182 FVHVST 187
V VST
Sbjct: 144 LVQVST 149
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 30.9 bits (70), Expect = 0.62
Identities = 28/130 (21%), Positives = 41/130 (31%), Gaps = 21/130 (16%)
Query: 30 PDDEIGTPMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQER 89
GT + D T+ +TG +L R H+ L P + +
Sbjct: 237 SLPAHGTASPWWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTTPSGSEGAEGT 294
Query: 90 LDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDR---ATLVKQVNI----- 141
A + L L AE+ D + + V D TD A L+ V+
Sbjct: 295 SGAAEDSGLA-GLVAELADLGATATVVTCDL---------TDAEAAARLLAGVSDAHPLS 344
Query: 142 -VFHGAATVR 150
V H TV
Sbjct: 345 AVLHLPPTVD 354
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 29.9 bits (68), Expect = 0.80
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVR-PKKGKDIQER 89
I +TG TG +G V+E L+++ P I +VR P K + + +
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAAQ 44
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 30.2 bits (69), Expect = 0.81
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 130 TDRATL-VKQVNIVFHGAATVRFDEHIKMAVK---INVCGVQAMLQLAREMKDLKAFVHV 185
D + + ++VFH AA + NV +L+ AR+ ++ V
Sbjct: 53 KDYSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQ-TGVRTVVFA 111
Query: 186 STA 188
S++
Sbjct: 112 SSS 114
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 30.2 bits (69), Expect = 0.88
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 41 FYRDKTIFLTGGTGFMGKTVVEK---LLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDR 97
F+RD+ I + GG G + +E+ L R + + L+ R +D + R I DR
Sbjct: 152 FFRDQDIAVIGG----GDSAMEEATFLTRFA---RSVTLVHR----RD-EFRASKIMLDR 199
Query: 98 LFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSET-DRATLVKQVNIVF----HGAATVRFD 152
+ V AV GD ++ GL + +T A V VF H +
Sbjct: 200 ARNNDKIRF-LTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR 258
Query: 153 EHIKM 157
E I +
Sbjct: 259 EAIDV 263
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 25 SPDDIPDDEIGTPMQEFYRD-----KTIFLTGGTGFMGKTVVEKLLR 66
P D+ D+ + + K F+TGG +G + E +R
Sbjct: 3 PPPDVEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMR 49
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 29.3 bits (66), Expect = 1.5
Identities = 25/184 (13%), Positives = 43/184 (23%), Gaps = 44/184 (23%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLR-----------SCPHLKHIYLLVRPKKGKDIQERLDAI 93
+ + GG G+ G L + H L I +R+
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 94 FEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGLGLSETDRATLVK-----QVNIVFHGAAT 148
+ GD D L + + + V H
Sbjct: 72 KAL------------TGKSIELYVGDI---------CDFEFLAESFKSFEPDSVVHFGEQ 110
Query: 149 VRFDEHIKMA------VKINVCGVQAMLQLAREMKDLKAFVHVSTAFT-HCPRERIDEEF 201
+ NV G +L +E + V + T P I+E +
Sbjct: 111 RSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 170
Query: 202 YPVP 205
+
Sbjct: 171 ITIT 174
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.4 bits (66), Expect = 1.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 44 DKTIFLTGGTGFMGKTVVEKLLRS 67
KTI + G TG G +++
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAAV 28
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 29.4 bits (66), Expect = 1.6
Identities = 34/155 (21%), Positives = 50/155 (32%), Gaps = 43/155 (27%)
Query: 50 TGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVPDF 109
TGG G +G+ + +L + + L R L E+
Sbjct: 265 TGGMGAIGRRLARRLAAE--GAERLVLTSRRGPEAPGAA------------ELAEELRGH 310
Query: 110 RSKVSAVAGDCSLPGLGLSETDR---ATLVKQVNI--VFHGAATV-----------RFDE 153
+V A D +R A LV VFH A + F+
Sbjct: 311 GCEVVHAACDV---------AERDALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFET 361
Query: 154 HIKMAVKINVCGVQAMLQLAREMKDLKAFVHVSTA 188
K VCG + + QL ++K L AFV S+
Sbjct: 362 --VRGAK--VCGAELLHQLTADIKGLDAFVLFSSV 392
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 29.0 bits (66), Expect = 1.9
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 45 KTIFLTGGTGFMGK-TVVE 62
TI +TGG G++G T VE
Sbjct: 6 GTILVTGGAGYIGSHTAVE 24
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 29.0 bits (66), Expect = 2.1
Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 45 KTIFLTGGTGFMGK-TVVE 62
+ + +TGG G++G TV+E
Sbjct: 3 EKVLVTGGAGYIGSHTVLE 21
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane
binding, matrix vessicle, protein and metal binding
protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A
1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A
1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A
1bcw_A 2ran_A ...
Length = 320
Score = 28.4 bits (63), Expect = 2.6
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 66 RSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAG--DCSLP 123
RS HL+ ++ G I+E +D L L A V RS + A S+
Sbjct: 200 RSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMK 259
Query: 124 GLGLSETDRATLV 136
G G TD TL+
Sbjct: 260 GAG---TDDDTLI 269
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 28.5 bits (64), Expect = 2.7
Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 34/145 (23%)
Query: 47 IFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDI-QERLDAIFEDRLFWRLRAE 105
+ + G GF+G + E+LLR + +Y L DI + + F + +
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHY--EVYGL-------DIGSDAISRFLNHPHFHFVEGD 53
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVKQVNIVFHGAATVRFDEHIKMAV---KIN 162
+ + VK+ ++V A E+ + + +++
Sbjct: 54 ISIHSEWIE-------------------YHVKKCDVVLPLVAIATPIEYTRNPLRVFELD 94
Query: 163 VCGVQAMLQLAREMKDLKAFVHVST 187
+++ + + K + ST
Sbjct: 95 FEENLRIIRYCVKYR--KRIIFPST 117
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 28.5 bits (64), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 44 DKTIFLTGGTGFMGK-TVVE 62
K + +TGG G++G TVVE
Sbjct: 11 SKIVLVTGGAGYIGSHTVVE 30
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 28.3 bits (64), Expect = 3.2
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 37/148 (25%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAE 105
I +TGG G +G ++E L +G +I + ++ F + E
Sbjct: 22 RILITGGAGCLGSNLIEHWL---------------PQGHEI-----LVIDN--FATGKRE 59
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVK-----QVNIVFHGAATVRFDEHIKMAVK 160
V + +S + G TD L + + V H AA + +
Sbjct: 60 VLPPVAGLSVIEGSV---------TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAA 110
Query: 161 INVCGVQAMLQLAREMKDLKAFVHVSTA 188
NV G + + A + +K ++ TA
Sbjct: 111 TNVQGSINVAKAASKA-GVKRLLNFQTA 137
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein
complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Length = 323
Score = 28.0 bits (62), Expect = 4.0
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 66 RSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAG--DCSLP 123
RS P LK + R KDI + + L A V R+ + +A +L
Sbjct: 204 RSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLLAIVNCVRNTPAFLAERLHRALK 263
Query: 124 GLGLSETDRATLV 136
G+G TD TL
Sbjct: 264 GIG---TDEFTLN 273
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2
PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 27.9 bits (63), Expect = 4.2
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 130 TDRATLVK-----QVNIVFHGAATVRFDEHIKMA---VKINVCGVQAMLQLAR------- 174
D A + + Q + V H AA D I ++ N+ G A+L++AR
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 175 -EMKDLKAFVHVST 187
+ K+ F H+ST
Sbjct: 120 EDKKNNFRFHHIST 133
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 27.8 bits (63), Expect = 4.4
Identities = 7/18 (38%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 46 TIFLTGGTGFMGK-TVVE 62
+ +TGG+G++G T V+
Sbjct: 2 RVLVTGGSGYIGSHTCVQ 19
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A*
1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 27.8 bits (63), Expect = 4.5
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 24/129 (18%)
Query: 41 FYRDKTIFLTGGTGFMGKTVVEK---LLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDR 97
FYR++ + + GG G T VE+ L ++L+ R +D R + I R
Sbjct: 142 FYRNQKVAVIGG----GNTAVEEALYLSNIA---SEVHLIHR----RD-GFRAEKILIKR 189
Query: 98 LFWRLRAE--VPDFRSKVSAVAGDCS-LPGLGL--SETDRATLVKQVNIVF----HGAAT 148
L ++ + + V GD + G+ L ++ V +F H T
Sbjct: 190 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNT 249
Query: 149 VRFDEHIKM 157
F+ +++
Sbjct: 250 AIFEGQLEL 258
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 27.9 bits (63), Expect = 4.6
Identities = 38/173 (21%), Positives = 62/173 (35%), Gaps = 46/173 (26%)
Query: 46 TIFLTGGTGFMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAE 105
+ +TGG GF+G +VE LL +G ++ A+ D L R
Sbjct: 2 RVLVTGGAGFIGSHIVEDLL---------------ARGLEV-----AVL-DNLATGKREN 40
Query: 106 VPDFRSKVSAVAGDCSLPGLGLSETDRATLVK-----QVNIVFHGAATVRFDEHIKMAVK 160
VP V D D+ + + + V H AA ++ V
Sbjct: 41 VPK---GVPFFRVDL---------RDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVL 88
Query: 161 ---INVCGVQAMLQLAREMKDLKAFVHVSTA---FTHCP-RERIDEEFYPVPL 206
+N+ G +L+ R+ ++ V ST + P ER +E + P P
Sbjct: 89 DFEVNLLGGLNLLEACRQ-YGVEKLVFASTGGAIYGEVPEGERAEETWPPRPK 140
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A
{Homo sapiens} PDB: 3bd0_A
Length = 293
Score = 27.7 bits (61), Expect = 4.7
Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 172 LAREMKDLKAFVHVSTAFTHCPRERIDEEFYPVPLKYENLIQLISETGDEELSEMTPNRV 231
++ + D VS+ F H + + + I+ + + G + ++ P
Sbjct: 169 FSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSF 228
Query: 232 --HISGTGWIDNVYGPIGMLVGIA 253
++ PIG+L+
Sbjct: 229 SNYLKKYHNTICGRHPIGVLLNAI 252
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 27.5 bits (62), Expect = 5.0
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 33 EIGTPMQEFY-RDKT----IFLTGGTGF--MGKTVVEKLLRSCPHLK-HIYLLVRPKKGK 84
+ P E + RD I + GGTGF ++++ L P+ IY R
Sbjct: 87 VVDIPHGEAWLRDDEERPMILIAGGTGFSYA-RSILLTALARNPNRDITIYWGGR----- 140
Query: 85 DIQERLDAIFEDRLFWRLRAEVPDFR 110
+++ L + P +
Sbjct: 141 ----EEQHLYDLCELEALSLKHPGLQ 162
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal
binding protein, calcium, calcium/phospholipid-binding;
1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A
1i4a_A 1aow_A
Length = 322
Score = 27.2 bits (60), Expect = 6.6
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 66 RSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAEVPDFRSKVSAVAGDCSLPGL 125
R+ HL H++ + KDI++ + + L A V R+K + A
Sbjct: 203 RNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALLAIVKCMRNKPAYFAERLYKSMK 262
Query: 126 GLSETDRATLV 136
GL TD +TL+
Sbjct: 263 GL-GTDDSTLI 272
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 27.2 bits (60), Expect = 7.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 45 KTIFLTGGTGFMGKTVVEKLLRSCPHLKHIYL 76
+ L+G + K+ + L+R CP+L H+ L
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 27.3 bits (61), Expect = 8.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 37 PMQEFYRDKTIFLTGGTGFMGKTVVEKLLRSCPH 70
P R + + G GF+G + E+LLR +
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHY 341
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 26.7 bits (60), Expect = 8.7
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 41 FYRDKTIFLTGGTGFMGKTVVEK---LLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDR 97
+R+K + + GG G + +E+ L + +Y++ R +D R I + R
Sbjct: 156 IFRNKPLAVIGG----GDSAMEEANFLTKYG---SKVYIIHR----RD-AFRASKIMQQR 203
Query: 98 LFWRLRAEVPDFRSKVSAVAGDCSLPGL 125
+ +V + S V GD L
Sbjct: 204 ALSNPKIDV-IWNSSVVEAYGDGERDVL 230
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.1 bits (61), Expect = 9.0
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 245 PIGMLVGIATGVLHTHLINLNTVTDMVPVDLVVNS 279
I + +ATG +HTHLI N T L V +
Sbjct: 617 AIPAI--LATGAVHTHLIRSNLRTF---TSLNVRT 646
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics,
NYSGXRC, LPS biosynthetic pathway, PSI, protein
structure initiative; 2.00A {Escherichia coli} SCOP:
c.87.1.7
Length = 348
Score = 26.9 bits (60), Expect = 9.2
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 55 FMGKTVVEKLLRSCPHLKHIYLLVRPKKGKDIQERLDAIFEDRLFWRLRAE 105
M LL P + + +I ER +L LR +
Sbjct: 35 VMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERR------KLGHSLREK 79
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 27.1 bits (61), Expect = 9.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 245 PIGMLVGIATGVLHTHLINLNTVTDMVPVDLVVNS 279
I L +A G +H HLI L+V++
Sbjct: 615 FIPPL--LAVGAVHHHLIRAGLRLK---ASLIVDT 644
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.413
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,888,967
Number of extensions: 307437
Number of successful extensions: 916
Number of sequences better than 10.0: 1
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 126
Length of query: 303
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 210
Effective length of database: 4,105,140
Effective search space: 862079400
Effective search space used: 862079400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)