BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17681
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L +GFG HI+W++L+ G + A SG PLMV+IHKS+C AC L PKFA S EI+EL+ F
Sbjct: 15 LGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF 74
Query: 82 EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQ 141
MVN+ D+EEP+D ++PDG Y+PRIL+ P G+ ++ N Y+++Y +VQ
Sbjct: 75 VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 134
Query: 142 AMKSA 146
MK A
Sbjct: 135 GMKEA 139
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 84/125 (67%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L +GFG HI+W++L+ G + A SG PLMV+IHKS+C AC L PKFA S EI+EL+ F
Sbjct: 22 LGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF 81
Query: 82 EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQ 141
MVN+ D+EEP+D ++PDG Y+PRIL+ P G+ ++ N Y+++Y +VQ
Sbjct: 82 VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 141
Query: 142 AMKSA 146
MK A
Sbjct: 142 GMKEA 146
>pdb|3PH9|A Chain A, Crystal Structure Of The Human Anterior Gradient Protein 3
pdb|3PH9|B Chain B, Crystal Structure Of The Human Anterior Gradient Protein 3
Length = 151
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 22 LSRGFGGHINW-KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP- 79
LSRG+G I W ++ + GL A+ S KPLMV+ H C L FA + EI E+A
Sbjct: 19 LSRGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQN 78
Query: 80 KFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSI 139
KF M+N+ E D +PDG YVPRI++ P ++ + S ++Y + D+P +
Sbjct: 79 KFIMLNLM--HETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLL 136
Query: 140 VQAMKSAL 147
++ MK AL
Sbjct: 137 IENMKKAL 144
>pdb|2LNT|A Chain A, Solution Structure Of E60a Mutant Agr2
Length = 140
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 3/127 (2%)
Query: 22 LSRGFGGHINW-KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK 80
LSRG+G + W ++ +A L +KTS KPLM++ H C L FA + EI +LA +
Sbjct: 9 LSRGWGDQLIWTQTYEAALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQ 68
Query: 81 FEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIV 140
F ++N+ E D +PDG YVPRI++ P ++ + S ++Y + D ++
Sbjct: 69 FVLLNLV--YETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLL 126
Query: 141 QAMKSAL 147
MK AL
Sbjct: 127 DNMKKAL 133
>pdb|2LNS|A Chain A, Solution Structure Of Agr2 Residues 41-175
pdb|2LNS|B Chain B, Solution Structure Of Agr2 Residues 41-175
Length = 140
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 22 LSRGFGGHINW-KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK 80
LSRG+G + W ++ + L +KTS KPLM++ H C L FA + EI +LA +
Sbjct: 9 LSRGWGDQLIWTQTYEEALYKSKTSNKPLMIIHHLDECPHSQALKKVFAENKEIQKLAEQ 68
Query: 81 FEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIV 140
F ++N+ E D +PDG YVPRI++ P ++ + S ++Y + D ++
Sbjct: 69 FVLLNLV--YETTDKHLSPDGQYVPRIMFVDPSLTVRADITGRYSNRLYAYEPADTALLL 126
Query: 141 QAMKSAL 147
MK AL
Sbjct: 127 DNMKKAL 133
>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From
Xylella Fastidiosa Temecula1
Length = 133
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 32 WKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
W + L A K + KP +++ ++C C L A +A FE+V I
Sbjct: 15 WTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKI 69
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 29 HINW---KSLDAGLQA-AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEM 83
H+N+ K++D QA + GKP+M+ ++ +C AC E + P++ + LA +
Sbjct: 7 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL 66
Query: 84 VNISDDEEPQDPKYAPDGDY--VPRILYFGPQGE--PKSQVFNAKSPQVYRHYYYD 135
+ QD + +P IL+F QG+ P+++V + + + D
Sbjct: 67 QANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 122
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 33.9 bits (76), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 29 HINW---KSLDAGLQA-AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEM 83
H+N+ K++D QA + GKP+M+ ++ +C AC E + P++ + LA +
Sbjct: 10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL 69
Query: 84 VNISDDEEPQDPKYAPDGDY--VPRILYFGPQGE--PKSQVFNAKSPQVYRHYYYD 135
+ QD + +P IL+F QG+ P+++V + + + D
Sbjct: 70 QANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L++ G N S + GK + + S+C C +P A E +A F
Sbjct: 4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNF 63
Query: 82 EMVNISDDEEPQD 94
E+V IS DE D
Sbjct: 64 EVVLISWDENESD 76
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 47 KPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP 92
KP++V ++C C +++P A AE K E+V ++ DE P
Sbjct: 24 KPVLVDFWAAWCGPCRQIAPSLEAIA--AEYGDKIEIVKLNIDENP 67
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKFEMVNISDDEEPQD 94
DA Q A KP++V ++C C ++P E AE A K + ++ DE P+
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE---EFAEAHADKVTVAKLNVDENPET 63
Query: 95 PKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDV 136
IL+ G GEP Q+ + + DV
Sbjct: 64 TSQFGIMSIPTLILFKG--GEPVKQLIGYQPKEQLEAQLADV 103
>pdb|2LST|A Chain A, Solution Structure Of A Thioredoxin From Thermus
Thermophilus
Length = 130
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 30 INWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISD 88
+ W L A+ G+ +MV H +C C +++ + P ++ L +F + ++S
Sbjct: 3 LRWYPYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSV 62
Query: 89 D 89
D
Sbjct: 63 D 63
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 31 NWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFA 69
N DA + AK +GK +++ S+C C ++P FA
Sbjct: 21 NKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFA 59
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 29 HINW---KSLDAGLQA-AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEM 83
H+N+ K++D QA + GKP+M+ ++ +C A E + P++ + LA +
Sbjct: 10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLL 69
Query: 84 VNISDDEEPQDPKYAPDGDY--VPRILYFGPQGE--PKSQVFNAKSPQVYRHYYYD 135
+ QD + +P IL+F QG+ P+++V + + + D
Sbjct: 70 QANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 29.6 bits (65), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 16/116 (13%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDE 90
+ D + K +GK +++ S+C C ++P F AE A KF + D +
Sbjct: 15 QEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVF------AEYAKKFPGAIFLKVDVD 68
Query: 91 EPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146
E +D A + + +P L+ GE V + ++ IV M SA
Sbjct: 69 ELKDVAEAYNVEAMPTFLFI-KDGEKVDSVVGGRKDDIH-------TKIVALMGSA 116
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 6/102 (5%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKFEMVNISDDEEPQD 94
DA Q A KP++V ++C C ++P E AE A K + ++ DE P+
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLE---EFAEAHADKVTVAKLNVDENPET 63
Query: 95 PKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDV 136
IL+ G G P Q+ + + DV
Sbjct: 64 TSQFGIMSIPTLILFKG--GRPVKQLIGYQPKEQLEAQLADV 103
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD 94
SGK + S+C C +P+ E + FE++ S DEE D
Sbjct: 47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDD 96
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At
1.14 A
Length = 156
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 38 GLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA--PKFEMVNIS 87
GL A GK +V + S+C CH+ +P + EL +F++V I+
Sbjct: 34 GLDPAAFKGKVSLVNVWASWCVPCHD------EAPLLTELGKDKRFQLVGIN 79
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE 90
AA SG+ V + C+ CH+L+P + + + + VN DD
Sbjct: 107 FDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR 158
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 48 PLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP 92
PL+V +C C +++P+F A+ A LA + + I P
Sbjct: 66 PLLVDFWAPWCGPCRQMAPQFQAAA--ATLAGQVRLAKIDTQAHP 108
>pdb|2JH8|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-capping Production-line
pdb|2JH9|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHA|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHC|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
pdb|2JHP|A Chain A, The Structure Of Bluetongue Virus Vp4 Reveals A
Multifunctional Rna-Capping Production-Line
Length = 644
Score = 26.9 bits (58), Expect = 3.9, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 49 LMVLIHKSYCAACHELSP---KFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYV- 104
+ + H S ++ +P K PEI L ++ + D+EP D K DY+
Sbjct: 128 MAIEFHGSEAETLNDANPRLHKIYGMPEIPPLYMEYAEIGTRFDDEPTDEKLVSMLDYIV 187
Query: 105 ---PRILYFGPQGEPKSQVFNAKSPQVYRHYYYDV 136
+ Y G F +SP +R + V
Sbjct: 188 YSAEEVHYIGCGDLRTLMQFKKRSPGRFRRVLWHV 222
>pdb|3IRA|A Chain A, The Crystal Structure Of One Domain Of The Conserved
Protein From Methanosarcina Mazei Go1
Length = 173
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK-FEMVNISDDEEP 92
+ + A+ KP+ + I S C CH ++ + E+A L + F + + +E P
Sbjct: 29 EEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERP 86
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP 92
K A + +GK + S+C C +P+ + + FE++ IS DE
Sbjct: 18 KGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDESA 77
Query: 93 QDPK 96
+D K
Sbjct: 78 EDFK 81
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP 95
D L A GK ++ +C C +++P + E++E P M + D +E D
Sbjct: 36 DQKLSEASRDGKIVLANFSARWCGPCKQIAPYYI---ELSENYPSL-MFLVIDVDELSDF 91
Query: 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYR 130
+ + P +F G+ ++ A P++++
Sbjct: 92 SASWEIKATP-TFFFLRDGQQVDKLVGANKPELHK 125
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKF 68
+ DA L K KP++V ++C C ++P F
Sbjct: 12 AWDAQLAKGKEEHKPIVVAFTATWCGPCKMIAPLF 46
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE-EPQDPKY 97
++ A T+ K +++ S+C C ++P FA ++A+ P + + DE +P ++
Sbjct: 27 IEEANTAKKLVVIDFTASWCGPCRIMAPVFA---DLAKKFPNAVFLKVDVDELKPIAEQF 83
Query: 98 APDGDYVPRILYFGPQGEPKSQVFNA 123
+ + +P L F +G+ K +V A
Sbjct: 84 SVEA--MPTFL-FMKEGDVKDRVVGA 106
>pdb|2CHL|A Chain A, Structure Of Casein Kinase 1 Gamma 3
Length = 351
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 101 GDYVPRILYFGPQGEPKSQVFNAKSPQV 128
GD +P++ YFGP G+ + V P +
Sbjct: 85 GDGIPQVYYFGPCGKYNAMVLELLGPSL 112
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPK 96
+GK + S+C C +P+ + FE++ IS DE +D K
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 78
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPK 96
+GK + S+C C +P+ + FE++ IS DE +D K
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFK 79
>pdb|2IZR|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZS|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZT|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
pdb|2IZU|A Chain A, Structure Of Casein Kinase Gamma 3 In Complex With
Inhibitor
Length = 330
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 101 GDYVPRILYFGPQGEPKSQVFNAKSPQV 128
GD +P++ YFGP G+ + V P +
Sbjct: 64 GDGIPQVYYFGPCGKYNAMVLELLGPSL 91
>pdb|4HGL|A Chain A, Crystal Structure Of Ck1g3 With Compound 1
pdb|4HGS|A Chain A, Crystal Structure Of Ck1gs With Compound 13
Length = 330
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 101 GDYVPRILYFGPQGEPKSQVFNAKSPQV 128
GD +P++ YFGP G+ + V P +
Sbjct: 64 GDGIPQVYYFGPCGKYNAMVLELLGPSL 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,601,549
Number of Sequences: 62578
Number of extensions: 189898
Number of successful extensions: 479
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 48
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)