Query psy17681
Match_columns 148
No_of_seqs 122 out of 1277
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:12:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02960 AGR Anterior Gradient 99.9 1.4E-26 3.1E-31 153.4 11.7 120 25-147 1-123 (130)
2 cd02959 ERp19 Endoplasmic reti 99.9 2E-26 4.3E-31 151.6 10.2 116 29-144 2-117 (117)
3 KOG0910|consensus 99.9 7.5E-22 1.6E-26 132.3 7.8 107 28-148 43-149 (150)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 1.5E-21 3.3E-26 126.9 7.8 98 45-146 13-110 (114)
5 cd02951 SoxW SoxW family; SoxW 99.8 1.6E-20 3.5E-25 124.6 9.2 102 35-148 2-120 (125)
6 cd02950 TxlA TRX-like protein 99.8 9.8E-21 2.1E-25 128.4 8.2 96 40-147 14-110 (142)
7 PHA02278 thioredoxin-like prot 99.8 8.9E-21 1.9E-25 121.9 6.7 85 44-141 12-99 (103)
8 cd02955 SSP411 TRX domain, SSP 99.8 4.6E-20 1E-24 122.1 9.4 85 36-122 5-99 (124)
9 cd02953 DsbDgamma DsbD gamma f 99.8 1.5E-19 3.2E-24 116.3 7.8 95 38-144 3-104 (104)
10 cd02958 UAS UAS family; UAS is 99.8 9.9E-19 2.1E-23 114.4 9.1 102 34-147 5-111 (114)
11 KOG0907|consensus 99.8 3E-19 6.5E-24 115.1 6.3 83 35-122 10-92 (106)
12 cd02999 PDI_a_ERp44_like PDIa 99.8 5.3E-19 1.2E-23 113.2 7.0 85 43-142 15-99 (100)
13 cd02985 TRX_CDSP32 TRX family, 99.8 2.9E-19 6.3E-24 114.9 5.8 83 34-122 5-89 (103)
14 cd02948 TRX_NDPK TRX domain, T 99.8 7.8E-19 1.7E-23 112.7 7.0 91 39-145 10-101 (102)
15 cd02986 DLP Dim1 family, Dim1- 99.8 1.1E-18 2.4E-23 112.8 6.5 108 34-147 4-111 (114)
16 cd02956 ybbN ybbN protein fami 99.8 1.4E-18 3E-23 110.1 5.7 86 44-143 10-95 (96)
17 PRK00293 dipZ thiol:disulfide 99.8 5.6E-18 1.2E-22 137.3 10.2 103 34-148 462-571 (571)
18 PRK10996 thioredoxin 2; Provis 99.8 3.6E-18 7.9E-23 115.5 7.6 96 38-147 44-139 (139)
19 cd03006 PDI_a_EFP1_N PDIa fami 99.7 1.9E-18 4.2E-23 112.7 5.7 86 43-142 26-112 (113)
20 PF03190 Thioredox_DsbH: Prote 99.7 2.9E-18 6.4E-23 117.4 6.5 114 27-144 17-141 (163)
21 cd02963 TRX_DnaJ TRX domain, D 99.7 4E-18 8.6E-23 111.1 5.9 88 44-145 22-110 (111)
22 cd02962 TMX2 TMX2 family; comp 99.7 1.6E-17 3.6E-22 113.5 9.2 96 44-143 45-148 (152)
23 PF13899 Thioredoxin_7: Thiore 99.7 8.8E-19 1.9E-23 108.2 2.7 80 31-112 1-82 (82)
24 PRK09381 trxA thioredoxin; Pro 99.7 1.3E-17 2.9E-22 108.0 8.0 91 44-148 19-109 (109)
25 PLN00410 U5 snRNP protein, DIM 99.7 5.8E-18 1.3E-22 114.0 5.9 108 34-148 13-121 (142)
26 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 9.1E-18 2E-22 107.4 6.1 85 43-141 15-99 (101)
27 TIGR02738 TrbB type-F conjugat 99.7 3.5E-17 7.6E-22 112.1 8.8 90 44-147 48-153 (153)
28 PTZ00443 Thioredoxin domain-co 99.7 3E-17 6.4E-22 118.7 8.7 98 34-145 39-137 (224)
29 cd02993 PDI_a_APS_reductase PD 99.7 3.3E-17 7.2E-22 106.3 7.3 79 41-122 16-97 (109)
30 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 1.4E-17 3E-22 107.0 5.1 86 44-142 17-103 (104)
31 COG3118 Thioredoxin domain-con 99.7 1.9E-17 4.2E-22 121.9 6.2 101 30-146 28-129 (304)
32 cd02997 PDI_a_PDIR PDIa family 99.7 1E-16 2.3E-21 102.5 8.8 89 41-142 12-103 (104)
33 PRK15412 thiol:disulfide inter 99.7 1.6E-16 3.5E-21 112.2 9.9 89 44-147 66-176 (185)
34 cd03000 PDI_a_TMX3 PDIa family 99.7 9.4E-17 2E-21 103.3 7.6 96 34-145 4-102 (104)
35 cd03002 PDI_a_MPD1_like PDI fa 99.7 6E-17 1.3E-21 104.7 6.6 95 34-143 9-108 (109)
36 cd03065 PDI_b_Calsequestrin_N 99.7 5.1E-17 1.1E-21 106.9 5.8 97 34-148 18-120 (120)
37 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.6E-16 3.4E-21 101.4 7.9 83 47-142 17-101 (102)
38 PF00085 Thioredoxin: Thioredo 99.7 4.7E-17 1E-21 103.7 4.8 95 34-145 8-102 (103)
39 cd02996 PDI_a_ERp44 PDIa famil 99.7 1.5E-16 3.2E-21 103.0 6.8 87 42-142 14-107 (108)
40 smart00594 UAS UAS domain. 99.7 5.4E-16 1.2E-20 102.6 9.3 98 34-143 15-121 (122)
41 PRK14018 trifunctional thiored 99.7 1.2E-16 2.6E-21 127.3 6.9 90 45-146 55-172 (521)
42 cd02949 TRX_NTR TRX domain, no 99.7 1.1E-16 2.3E-21 101.8 5.3 87 43-143 10-96 (97)
43 TIGR01068 thioredoxin thioredo 99.7 4.2E-16 9.1E-21 98.9 7.8 90 44-147 12-101 (101)
44 TIGR01126 pdi_dom protein disu 99.7 3.4E-16 7.3E-21 99.6 7.2 90 44-146 11-101 (102)
45 cd02994 PDI_a_TMX PDIa family, 99.7 2.6E-16 5.6E-21 100.5 6.7 84 46-145 17-101 (101)
46 PTZ00102 disulphide isomerase; 99.6 2.2E-15 4.7E-20 119.9 12.1 95 39-147 42-138 (477)
47 TIGR01295 PedC_BrcD bacterioci 99.6 2.3E-15 5.1E-20 99.5 10.2 88 42-143 19-120 (122)
48 cd02984 TRX_PICOT TRX domain, 99.6 8.6E-16 1.9E-20 97.2 7.5 72 46-122 14-86 (97)
49 PF13098 Thioredoxin_2: Thiore 99.6 2.8E-17 6.1E-22 106.8 0.6 89 43-143 2-112 (112)
50 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 9.5E-16 2.1E-20 97.9 7.0 87 44-142 16-103 (104)
51 cd02998 PDI_a_ERp38 PDIa famil 99.6 7.2E-16 1.6E-20 98.6 6.4 88 43-142 15-104 (105)
52 cd02965 HyaE HyaE family; HyaE 99.6 4.1E-16 9E-21 100.8 5.1 85 30-122 15-101 (111)
53 cd02989 Phd_like_TxnDC9 Phosdu 99.6 4.3E-16 9.3E-21 101.8 5.2 80 39-123 15-94 (113)
54 cd02975 PfPDO_like_N Pyrococcu 99.6 5.5E-16 1.2E-20 101.3 5.3 99 36-148 12-111 (113)
55 cd02957 Phd_like Phosducin (Ph 99.6 1.4E-15 3E-20 99.3 6.4 72 46-123 24-95 (113)
56 COG4232 Thiol:disulfide interc 99.6 4.1E-15 9E-20 118.2 9.9 98 38-147 464-568 (569)
57 TIGR00385 dsbE periplasmic pro 99.6 3.5E-15 7.6E-20 104.3 8.2 89 44-147 61-171 (173)
58 cd03001 PDI_a_P5 PDIa family, 99.6 2.3E-15 5.1E-20 96.1 6.6 87 44-143 16-102 (103)
59 TIGR01626 ytfJ_HI0045 conserve 99.6 3.1E-15 6.8E-20 105.0 7.5 88 42-141 55-174 (184)
60 cd03008 TryX_like_RdCVF Trypar 99.6 1.3E-15 2.9E-20 103.4 5.3 75 43-119 22-128 (146)
61 cd02961 PDI_a_family Protein D 99.6 3.9E-15 8.4E-20 93.9 7.0 92 39-142 8-100 (101)
62 KOG0908|consensus 99.6 1.7E-15 3.7E-20 108.8 5.6 95 34-146 11-105 (288)
63 PTZ00051 thioredoxin; Provisio 99.6 2.9E-15 6.3E-20 95.0 5.7 80 38-122 10-89 (98)
64 PRK03147 thiol-disulfide oxido 99.6 1.2E-14 2.5E-19 101.2 9.0 95 40-146 55-171 (173)
65 cd02987 Phd_like_Phd Phosducin 99.6 4.4E-15 9.5E-20 104.0 6.8 72 46-123 83-154 (175)
66 PTZ00102 disulphide isomerase; 99.6 1.2E-14 2.7E-19 115.6 9.3 98 34-146 366-464 (477)
67 cd02947 TRX_family TRX family; 99.5 1.7E-14 3.6E-19 89.4 6.6 87 42-143 6-92 (93)
68 cd02952 TRP14_like Human TRX-r 99.5 6.5E-15 1.4E-19 96.7 4.8 78 34-115 11-102 (119)
69 COG1331 Highly conserved prote 99.5 3.9E-14 8.5E-19 114.3 9.8 116 27-146 23-149 (667)
70 cd02992 PDI_a_QSOX PDIa family 99.5 3.6E-14 7.7E-19 92.8 7.8 69 44-114 17-89 (114)
71 cd03010 TlpA_like_DsbE TlpA-li 99.5 1.4E-14 3E-19 96.1 5.8 79 40-122 19-119 (127)
72 TIGR00424 APS_reduc 5'-adenyly 99.5 2.1E-14 4.6E-19 113.2 7.5 99 34-145 360-461 (463)
73 COG2143 Thioredoxin-related pr 99.5 2.1E-13 4.6E-18 91.8 10.8 117 11-144 12-146 (182)
74 TIGR02740 TraF-like TraF-like 99.5 3.7E-14 7.9E-19 105.6 7.7 92 41-146 161-263 (271)
75 cd03009 TryX_like_TryX_NRX Try 99.5 1.7E-14 3.6E-19 96.3 4.6 75 44-120 16-116 (131)
76 PF13905 Thioredoxin_8: Thiore 99.5 4.5E-15 9.8E-20 93.7 1.5 69 46-116 1-95 (95)
77 cd02964 TryX_like_family Trypa 99.5 1.3E-14 2.9E-19 97.0 3.7 79 41-121 12-117 (132)
78 cd03011 TlpA_like_ScsD_MtbDsbE 99.5 6.2E-14 1.4E-18 92.3 6.5 85 41-142 15-121 (123)
79 PRK13728 conjugal transfer pro 99.5 2.1E-13 4.5E-18 95.4 8.3 84 50-147 73-171 (181)
80 PTZ00062 glutaredoxin; Provisi 99.5 2E-13 4.3E-18 97.4 8.3 63 47-122 18-80 (204)
81 TIGR00411 redox_disulf_1 small 99.5 6.9E-14 1.5E-18 85.8 5.0 81 49-147 2-82 (82)
82 PLN02919 haloacid dehalogenase 99.5 8E-14 1.7E-18 119.8 7.0 90 45-147 419-536 (1057)
83 PLN02309 5'-adenylylsulfate re 99.5 1.3E-13 2.7E-18 108.8 7.3 92 43-145 362-455 (457)
84 TIGR01130 ER_PDI_fam protein d 99.5 2.4E-13 5.1E-18 107.5 8.9 93 41-146 13-108 (462)
85 cd03012 TlpA_like_DipZ_like Tl 99.5 5E-14 1.1E-18 93.5 4.3 82 39-122 16-124 (126)
86 cd02967 mauD Methylamine utili 99.5 5.2E-14 1.1E-18 91.5 3.6 72 45-119 20-111 (114)
87 KOG0190|consensus 99.5 1.3E-13 2.8E-18 108.7 6.3 95 34-145 34-130 (493)
88 KOG0190|consensus 99.4 1.9E-13 4E-18 107.8 7.0 95 34-144 375-470 (493)
89 cd02988 Phd_like_VIAF Phosduci 99.4 1.9E-13 4.1E-18 97.0 6.2 71 46-124 102-172 (192)
90 PF08534 Redoxin: Redoxin; In 99.4 2.8E-13 6E-18 91.9 5.1 77 44-122 26-133 (146)
91 PTZ00056 glutathione peroxidas 99.4 1.2E-12 2.6E-17 93.4 8.5 96 42-147 35-178 (199)
92 PLN02399 phospholipid hydroper 99.4 2.2E-12 4.7E-17 94.1 9.8 99 40-148 93-235 (236)
93 cd02966 TlpA_like_family TlpA- 99.4 5.2E-13 1.1E-17 85.7 5.2 78 43-122 16-116 (116)
94 PLN02412 probable glutathione 99.4 1.7E-12 3.7E-17 90.3 7.9 93 44-148 27-165 (167)
95 TIGR01130 ER_PDI_fam protein d 99.4 2.1E-12 4.5E-17 102.1 9.0 95 34-146 355-453 (462)
96 TIGR02661 MauD methylamine deh 99.3 2.6E-12 5.5E-17 91.1 6.8 72 44-119 72-162 (189)
97 cd02991 UAS_ETEA UAS family, E 99.3 6.8E-12 1.5E-16 82.2 8.1 99 34-147 5-113 (116)
98 PHA02125 thioredoxin-like prot 99.3 1.8E-12 3.9E-17 78.6 4.9 60 50-122 2-61 (75)
99 TIGR02187 GlrX_arch Glutaredox 99.3 4E-12 8.7E-17 91.8 7.0 87 46-146 19-110 (215)
100 cd03007 PDI_a_ERp29_N PDIa fam 99.3 1.4E-11 3.1E-16 80.4 7.8 89 34-145 10-114 (116)
101 KOG4277|consensus 99.3 4.9E-12 1.1E-16 93.7 6.1 96 33-144 31-129 (468)
102 TIGR00412 redox_disulf_2 small 99.3 1.4E-12 3.1E-17 79.3 2.5 62 50-122 2-63 (76)
103 TIGR02540 gpx7 putative glutat 99.3 1.4E-11 3.1E-16 84.3 7.7 92 43-146 19-152 (153)
104 TIGR02187 GlrX_arch Glutaredox 99.3 6E-12 1.3E-16 90.8 6.0 84 45-146 131-215 (215)
105 cd02982 PDI_b'_family Protein 99.3 2.8E-12 6.1E-17 81.8 3.7 88 46-146 12-102 (103)
106 cd00340 GSH_Peroxidase Glutath 99.3 9E-12 2E-16 85.3 5.7 43 43-86 19-62 (152)
107 PTZ00256 glutathione peroxidas 99.3 4.9E-11 1.1E-15 84.1 8.9 96 41-148 35-182 (183)
108 cd02969 PRX_like1 Peroxiredoxi 99.2 2.6E-11 5.5E-16 84.5 6.1 100 45-148 24-153 (171)
109 cd03017 PRX_BCP Peroxiredoxin 99.2 5.5E-11 1.2E-15 79.8 5.6 86 45-142 22-138 (140)
110 KOG2501|consensus 99.1 2.6E-11 5.7E-16 82.3 2.1 74 44-119 31-131 (157)
111 KOG0912|consensus 99.1 1.1E-10 2.4E-15 86.5 5.1 90 45-147 12-106 (375)
112 cd03015 PRX_Typ2cys Peroxiredo 99.0 1.1E-09 2.3E-14 76.5 7.5 98 43-146 26-156 (173)
113 KOG1731|consensus 99.0 3.2E-10 7E-15 90.1 5.2 76 34-114 48-127 (606)
114 PF00578 AhpC-TSA: AhpC/TSA fa 99.0 2E-10 4.3E-15 75.4 3.4 73 45-119 24-124 (124)
115 KOG0191|consensus 99.0 6.2E-10 1.4E-14 86.8 6.4 90 43-147 44-134 (383)
116 PRK00522 tpx lipid hydroperoxi 99.0 1.4E-09 3.1E-14 75.6 7.3 77 43-122 41-149 (167)
117 PRK09437 bcp thioredoxin-depen 99.0 1.8E-09 3.8E-14 73.9 7.6 79 44-122 28-138 (154)
118 TIGR03137 AhpC peroxiredoxin. 99.0 1.3E-09 2.8E-14 77.2 7.0 98 43-146 28-155 (187)
119 cd02973 TRX_GRX_like Thioredox 99.0 4.2E-10 9.1E-15 66.4 3.0 61 50-117 3-63 (67)
120 KOG0914|consensus 99.0 3.2E-09 6.9E-14 75.5 7.7 94 41-136 139-238 (265)
121 cd03018 PRX_AhpE_like Peroxire 99.0 2.7E-09 5.8E-14 72.4 6.8 79 45-123 26-133 (149)
122 cd02970 PRX_like2 Peroxiredoxi 98.9 2E-09 4.4E-14 72.7 5.9 77 46-122 23-148 (149)
123 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 1E-09 2.2E-14 68.7 3.6 68 46-122 12-79 (89)
124 KOG2244|consensus 98.9 4.8E-09 1E-13 83.2 7.7 115 28-146 93-218 (786)
125 cd03014 PRX_Atyp2cys Peroxired 98.9 3.5E-09 7.6E-14 71.4 5.1 77 45-122 25-128 (143)
126 PRK10382 alkyl hydroperoxide r 98.8 1.3E-08 2.7E-13 72.1 7.3 95 44-146 29-155 (187)
127 PRK13190 putative peroxiredoxi 98.8 1.9E-08 4.1E-13 72.0 6.9 97 44-146 25-153 (202)
128 cd02971 PRX_family Peroxiredox 98.8 1E-08 2.2E-13 68.7 5.1 79 45-123 21-129 (140)
129 PRK15000 peroxidase; Provision 98.8 2.6E-08 5.6E-13 71.2 6.9 94 45-146 33-161 (200)
130 KOG0191|consensus 98.8 1.3E-08 2.7E-13 79.5 5.5 92 43-146 159-251 (383)
131 COG0526 TrxA Thiol-disulfide i 98.7 7.4E-09 1.6E-13 65.8 2.5 74 46-122 32-107 (127)
132 cd02968 SCO SCO (an acronym fo 98.7 1.4E-08 3E-13 68.2 3.8 44 45-88 21-69 (142)
133 TIGR02200 GlrX_actino Glutared 98.7 4.1E-08 8.8E-13 59.1 5.4 58 50-118 2-64 (77)
134 PF14595 Thioredoxin_9: Thiore 98.6 9.6E-09 2.1E-13 68.5 1.3 75 44-122 39-116 (129)
135 cd01659 TRX_superfamily Thiore 98.6 4.1E-08 8.9E-13 55.7 3.6 61 50-113 1-63 (69)
136 PRK13599 putative peroxiredoxi 98.6 1.6E-07 3.5E-12 67.8 7.0 93 45-145 27-154 (215)
137 TIGR02196 GlrX_YruB Glutaredox 98.6 3.8E-08 8.3E-13 58.4 3.1 59 50-122 2-63 (74)
138 PF13728 TraF: F plasmid trans 98.6 2.5E-07 5.4E-12 66.8 6.7 86 44-143 118-214 (215)
139 PRK10606 btuE putative glutath 98.5 1.9E-07 4.1E-12 65.8 5.8 35 41-76 20-54 (183)
140 PRK13191 putative peroxiredoxi 98.5 2.9E-07 6.3E-12 66.5 6.9 96 45-146 32-160 (215)
141 PF06110 DUF953: Eukaryotic pr 98.5 4.6E-08 9.9E-13 64.1 2.4 80 34-115 7-101 (119)
142 PRK13189 peroxiredoxin; Provis 98.5 3.5E-07 7.5E-12 66.5 6.8 95 45-145 34-161 (222)
143 PTZ00137 2-Cys peroxiredoxin; 98.5 3.8E-07 8.2E-12 67.6 6.6 96 45-146 97-224 (261)
144 TIGR02180 GRX_euk Glutaredoxin 98.5 3E-07 6.5E-12 56.2 5.0 58 50-116 1-64 (84)
145 KOG3425|consensus 98.5 6.3E-07 1.4E-11 58.0 6.2 79 34-115 14-107 (128)
146 cd03016 PRX_1cys Peroxiredoxin 98.4 5.6E-07 1.2E-11 64.5 6.0 94 46-145 24-152 (203)
147 TIGR02739 TraF type-F conjugat 98.4 2.7E-06 5.8E-11 62.9 9.3 90 44-147 148-248 (256)
148 PRK11509 hydrogenase-1 operon 98.4 8.6E-07 1.9E-11 59.1 5.9 89 46-148 34-125 (132)
149 PTZ00253 tryparedoxin peroxida 98.4 8.2E-07 1.8E-11 63.4 6.1 99 42-146 32-163 (199)
150 PRK13703 conjugal pilus assemb 98.3 2.8E-06 6E-11 62.5 7.9 89 45-147 142-241 (248)
151 PRK11200 grxA glutaredoxin 1; 98.0 1.4E-05 3E-10 49.2 5.1 63 49-117 2-69 (85)
152 KOG3414|consensus 98.0 3.9E-05 8.6E-10 50.2 6.4 99 44-146 21-119 (142)
153 cd02990 UAS_FAF1 UAS family, F 98.0 0.00012 2.5E-09 49.2 8.9 103 34-148 5-134 (136)
154 KOG2507|consensus 97.9 0.00012 2.6E-09 57.0 8.5 104 31-147 2-111 (506)
155 PF02966 DIM1: Mitosis protein 97.8 0.00014 3E-09 48.1 7.2 107 34-146 10-116 (133)
156 PF13192 Thioredoxin_3: Thiore 97.7 2E-05 4.3E-10 47.6 2.0 73 51-143 3-75 (76)
157 cd02976 NrdH NrdH-redoxin (Nrd 97.7 4.4E-05 9.5E-10 44.8 3.5 51 50-109 2-56 (73)
158 TIGR02190 GlrX-dom Glutaredoxi 97.7 0.00011 2.5E-09 44.5 5.3 60 46-116 6-67 (79)
159 PF02114 Phosducin: Phosducin; 97.7 7.7E-05 1.7E-09 55.6 5.2 71 46-122 146-216 (265)
160 KOG0913|consensus 97.7 1.6E-05 3.4E-10 57.4 1.4 83 47-144 40-123 (248)
161 cd03419 GRX_GRXh_1_2_like Glut 97.7 4.8E-05 1E-09 46.1 3.2 56 50-116 2-63 (82)
162 PF00462 Glutaredoxin: Glutare 97.7 2.2E-05 4.8E-10 45.0 1.4 52 50-109 1-55 (60)
163 PRK11657 dsbG disulfide isomer 97.6 3.9E-05 8.5E-10 56.7 2.9 36 96-144 214-249 (251)
164 PRK10877 protein disulfide iso 97.6 4.4E-05 9.5E-10 55.8 2.9 35 96-147 197-231 (232)
165 cd02066 GRX_family Glutaredoxi 97.6 7.9E-05 1.7E-09 43.5 3.0 57 50-117 2-61 (72)
166 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00021 4.7E-09 50.8 5.2 27 44-70 75-101 (197)
167 TIGR02189 GlrX-like_plant Glut 97.4 0.00028 6E-09 44.8 4.5 53 50-111 10-68 (99)
168 TIGR02183 GRXA Glutaredoxin, G 97.4 0.00022 4.8E-09 44.0 3.9 58 50-111 2-64 (86)
169 PHA03050 glutaredoxin; Provisi 97.4 0.00034 7.5E-09 45.2 4.8 60 50-117 15-80 (108)
170 COG1225 Bcp Peroxiredoxin [Pos 97.3 0.001 2.2E-08 45.7 6.4 84 39-122 23-138 (157)
171 KOG0911|consensus 97.3 2E-05 4.3E-10 56.6 -2.2 74 45-123 16-89 (227)
172 TIGR03143 AhpF_homolog putativ 97.3 0.00063 1.4E-08 55.7 6.0 85 40-143 469-554 (555)
173 KOG1672|consensus 97.2 0.00072 1.6E-08 47.7 5.0 75 43-122 81-155 (211)
174 PRK15317 alkyl hydroperoxide r 97.2 0.0011 2.5E-08 53.8 6.6 81 43-144 112-195 (517)
175 PRK10329 glutaredoxin-like pro 97.2 0.00047 1E-08 42.1 3.4 52 50-109 3-56 (81)
176 TIGR02181 GRX_bact Glutaredoxi 97.2 0.00031 6.7E-09 42.4 2.5 52 50-111 1-56 (79)
177 cd03418 GRX_GRXb_1_3_like Glut 97.1 0.00047 1E-08 41.0 2.8 55 50-116 2-61 (75)
178 cd03029 GRX_hybridPRX5 Glutare 97.1 0.001 2.2E-08 39.4 4.2 56 50-116 3-60 (72)
179 COG0386 BtuE Glutathione perox 97.1 0.0049 1.1E-07 42.0 7.5 95 40-148 19-161 (162)
180 TIGR02194 GlrX_NrdH Glutaredox 97.1 0.00056 1.2E-08 40.6 2.7 52 51-111 2-55 (72)
181 cd03027 GRX_DEP Glutaredoxin ( 97.0 0.00067 1.5E-08 40.3 3.0 53 50-111 3-58 (73)
182 TIGR00365 monothiol glutaredox 97.0 0.0011 2.3E-08 42.0 3.9 60 46-116 11-77 (97)
183 COG0695 GrxC Glutaredoxin and 97.0 0.0013 2.8E-08 40.1 3.9 53 50-111 3-60 (80)
184 cd03028 GRX_PICOT_like Glutare 96.9 0.0011 2.5E-08 41.2 3.2 59 46-116 7-73 (90)
185 PRK10954 periplasmic protein d 96.8 0.0013 2.9E-08 47.1 3.0 23 46-68 37-59 (207)
186 TIGR03140 AhpF alkyl hydropero 96.7 0.0051 1.1E-07 50.0 6.6 84 41-145 111-197 (515)
187 COG1999 Uncharacterized protei 96.7 0.014 3E-07 42.1 7.9 101 37-147 58-204 (207)
188 PRK10638 glutaredoxin 3; Provi 96.7 0.0023 4.9E-08 39.1 3.2 57 50-117 4-63 (83)
189 PF11009 DUF2847: Protein of u 96.6 0.0011 2.5E-08 42.4 1.7 83 34-120 9-94 (105)
190 cd03023 DsbA_Com1_like DsbA fa 96.5 0.0029 6.2E-08 42.4 3.0 27 45-71 4-30 (154)
191 PRK10824 glutaredoxin-4; Provi 96.2 0.0072 1.6E-07 39.4 3.7 38 46-89 14-55 (115)
192 KOG1752|consensus 96.2 0.011 2.3E-07 37.9 4.3 34 50-89 16-49 (104)
193 PTZ00062 glutaredoxin; Provisi 96.2 0.011 2.3E-07 42.6 4.7 48 35-89 102-153 (204)
194 cd02972 DsbA_family DsbA famil 96.0 0.0038 8.3E-08 38.2 1.6 23 50-72 1-23 (98)
195 PF05768 DUF836: Glutaredoxin- 95.9 0.0046 9.9E-08 37.6 1.6 79 50-144 2-81 (81)
196 PRK12759 bifunctional gluaredo 95.9 0.016 3.4E-07 46.0 4.7 34 50-89 4-37 (410)
197 KOG2603|consensus 95.6 0.037 8.1E-07 41.9 5.4 92 46-145 60-164 (331)
198 PF00837 T4_deiodinase: Iodoth 95.4 0.029 6.3E-07 41.0 4.4 46 44-89 100-145 (237)
199 PF13848 Thioredoxin_6: Thiore 95.4 0.027 5.8E-07 38.9 4.1 94 41-145 89-184 (184)
200 TIGR03143 AhpF_homolog putativ 95.1 0.18 3.9E-06 41.5 8.7 86 46-147 366-454 (555)
201 cd03019 DsbA_DsbA DsbA family, 95.1 0.017 3.6E-07 39.9 2.4 29 45-73 14-42 (178)
202 KOG2640|consensus 95.1 0.014 3E-07 44.2 1.9 86 44-146 74-161 (319)
203 PF13462 Thioredoxin_4: Thiore 94.5 0.037 8E-07 37.5 2.7 31 45-75 11-41 (162)
204 PF02630 SCO1-SenC: SCO1/SenC; 94.3 0.1 2.2E-06 36.4 4.7 46 43-88 49-98 (174)
205 cd02983 P5_C P5 family, C-term 94.3 0.059 1.3E-06 35.9 3.4 89 47-147 20-115 (130)
206 cd03013 PRX5_like Peroxiredoxi 94.3 0.075 1.6E-06 36.3 3.9 44 45-88 28-75 (155)
207 cd03073 PDI_b'_ERp72_ERp57 PDI 93.7 0.11 2.3E-06 33.7 3.6 88 46-145 14-109 (111)
208 COG4545 Glutaredoxin-related p 93.4 0.24 5.2E-06 29.7 4.4 61 46-118 2-77 (85)
209 PF01216 Calsequestrin: Calseq 93.4 0.11 2.4E-06 40.1 3.6 95 34-147 43-144 (383)
210 cd03072 PDI_b'_ERp44 PDIb' fam 92.7 0.18 3.9E-06 32.5 3.5 90 45-147 15-108 (111)
211 cd03060 GST_N_Omega_like GST_N 92.6 0.15 3.2E-06 29.7 2.8 20 51-70 2-21 (71)
212 KOG3170|consensus 92.0 0.81 1.8E-05 32.9 6.2 84 30-122 96-179 (240)
213 cd02977 ArsC_family Arsenate R 91.2 0.43 9.4E-06 30.2 4.0 33 51-89 2-34 (105)
214 PF06053 DUF929: Domain of unk 89.8 0.21 4.5E-06 37.0 1.7 22 44-65 56-77 (249)
215 cd03031 GRX_GRX_like Glutaredo 88.3 0.55 1.2E-05 32.0 2.8 33 51-89 3-41 (147)
216 KOG3171|consensus 88.0 0.51 1.1E-05 34.2 2.6 81 34-121 148-228 (273)
217 cd02981 PDI_b_family Protein D 87.9 1.9 4.2E-05 26.3 5.1 83 43-145 14-96 (97)
218 cd03036 ArsC_like Arsenate Red 87.7 1 2.2E-05 29.0 3.7 57 51-115 2-61 (111)
219 KOG2792|consensus 87.3 2.4 5.2E-05 31.6 5.8 32 104-145 242-273 (280)
220 KOG1651|consensus 86.9 5.8 0.00012 27.6 7.1 25 39-63 27-51 (171)
221 cd03040 GST_N_mPGES2 GST_N fam 86.8 1.5 3.2E-05 25.7 3.9 20 51-70 3-22 (77)
222 PRK01655 spxA transcriptional 86.7 1.5 3.2E-05 29.2 4.2 21 50-70 2-22 (131)
223 PF13778 DUF4174: Domain of un 86.4 7 0.00015 25.4 8.0 39 96-145 72-110 (118)
224 cd03035 ArsC_Yffb Arsenate Red 85.3 1.8 3.9E-05 27.6 3.9 33 51-89 2-34 (105)
225 TIGR01617 arsC_related transcr 83.8 1.9 4.2E-05 27.8 3.7 32 51-88 2-33 (117)
226 cd03041 GST_N_2GST_N GST_N fam 83.8 5.8 0.00012 23.3 5.5 20 51-70 3-22 (77)
227 PRK12559 transcriptional regul 81.4 3.7 8.1E-05 27.3 4.3 21 50-70 2-22 (131)
228 PF08139 LPAM_1: Prokaryotic m 81.1 1.6 3.4E-05 20.4 1.7 17 3-19 7-24 (25)
229 PF07912 ERp29_N: ERp29, N-ter 80.6 6.5 0.00014 26.0 5.1 96 34-145 13-117 (126)
230 cd03032 ArsC_Spx Arsenate Redu 80.4 4 8.7E-05 26.3 4.2 33 50-88 2-34 (115)
231 PF01323 DSBA: DSBA-like thior 80.0 2.8 6.2E-05 29.0 3.6 32 96-144 162-193 (193)
232 PRK15317 alkyl hydroperoxide r 79.3 19 0.00042 29.4 8.7 77 45-147 17-94 (517)
233 cd00570 GST_N_family Glutathio 79.0 8.4 0.00018 21.1 4.9 19 52-70 3-21 (71)
234 PF07449 HyaE: Hydrogenase-1 e 76.6 1.8 3.9E-05 27.8 1.6 72 47-122 26-100 (107)
235 PHA03075 glutaredoxin-like pro 76.6 1.9 4E-05 28.2 1.7 26 47-72 2-27 (123)
236 PRK13344 spxA transcriptional 75.7 7.7 0.00017 25.8 4.5 21 50-70 2-22 (132)
237 cd03059 GST_N_SspA GST_N famil 75.6 2.6 5.6E-05 24.2 2.0 20 51-70 2-21 (73)
238 PF13462 Thioredoxin_4: Thiore 74.5 4.3 9.3E-05 27.1 3.2 32 96-145 131-162 (162)
239 KOG0855|consensus 74.4 4.3 9.3E-05 28.4 3.1 30 45-74 89-119 (211)
240 COG0278 Glutaredoxin-related p 73.1 9.1 0.0002 24.4 4.0 47 37-89 6-56 (105)
241 COG0450 AhpC Peroxiredoxin [Po 70.6 36 0.00079 24.3 7.2 98 43-146 30-160 (194)
242 COG2761 FrnE Predicted dithiol 69.7 7.6 0.00017 28.4 3.6 35 96-147 179-213 (225)
243 COG1651 DsbG Protein-disulfide 69.3 6 0.00013 28.7 3.2 24 47-70 85-108 (244)
244 cd03023 DsbA_Com1_like DsbA fa 67.4 6.5 0.00014 25.8 2.8 30 96-143 124-153 (154)
245 COG3531 Predicted protein-disu 65.1 11 0.00023 27.2 3.5 41 96-147 169-209 (212)
246 COG3019 Predicted metal-bindin 65.0 41 0.00089 22.8 6.8 74 49-145 27-102 (149)
247 cd03051 GST_N_GTT2_like GST_N 64.6 4.4 9.6E-05 23.1 1.4 19 52-70 3-21 (74)
248 PF08806 Sep15_SelM: Sep15/Sel 64.0 15 0.00032 22.1 3.6 39 96-145 36-74 (78)
249 PF05176 ATP-synt_10: ATP10 pr 62.4 17 0.00037 27.0 4.4 38 97-144 210-247 (252)
250 PRK11627 hypothetical protein; 62.0 7.8 0.00017 27.6 2.4 20 1-20 1-20 (192)
251 TIGR03140 AhpF alkyl hydropero 61.9 80 0.0017 25.9 8.6 77 46-147 18-95 (515)
252 cd03037 GST_N_GRX2 GST_N famil 61.1 5.4 0.00012 22.8 1.3 19 52-70 3-21 (71)
253 COG1651 DsbG Protein-disulfide 60.6 12 0.00026 27.2 3.3 34 96-147 210-243 (244)
254 PF04134 DUF393: Protein of un 60.0 12 0.00025 23.7 2.9 59 53-115 2-61 (114)
255 PF11287 DUF3088: Protein of u 59.7 16 0.00035 23.7 3.4 81 57-145 23-105 (112)
256 COG5510 Predicted small secret 57.1 13 0.00027 19.8 2.1 28 1-30 1-32 (44)
257 cd03055 GST_N_Omega GST_N fami 56.7 17 0.00037 22.0 3.1 21 50-70 19-39 (89)
258 PRK11372 lysozyme inhibitor; P 56.3 37 0.0008 21.8 4.6 45 1-55 1-48 (109)
259 TIGR02742 TrbC_Ftype type-F co 55.6 24 0.00052 23.5 3.8 70 34-114 13-82 (130)
260 cd02974 AhpF_NTD_N Alkyl hydro 54.9 50 0.0011 20.5 7.2 75 46-146 18-93 (94)
261 cd03019 DsbA_DsbA DsbA family, 54.6 16 0.00035 24.7 3.0 19 96-119 138-156 (178)
262 PRK00022 lolB outer membrane l 53.5 22 0.00047 25.3 3.6 18 2-19 2-19 (202)
263 cd03024 DsbA_FrnE DsbA family, 52.7 18 0.00039 25.1 3.1 31 96-143 170-200 (201)
264 PF13743 Thioredoxin_5: Thiore 52.1 8 0.00017 26.9 1.2 27 52-78 2-28 (176)
265 PF11153 DUF2931: Protein of u 51.7 20 0.00043 25.8 3.2 30 4-33 2-31 (216)
266 PF09695 YtfJ_HI0045: Bacteria 50.6 36 0.00079 23.5 4.1 31 104-144 125-155 (160)
267 PRK10081 entericidin B membran 50.2 28 0.00061 19.0 2.8 11 1-11 1-11 (48)
268 PRK11443 lipoprotein; Provisio 45.9 17 0.00036 24.1 1.8 17 4-20 2-18 (124)
269 PF09936 Methyltrn_RNA_4: SAM- 45.4 25 0.00054 24.9 2.7 31 27-60 116-146 (185)
270 cd03033 ArsC_15kD Arsenate Red 44.8 20 0.00043 23.1 2.0 21 50-70 2-22 (113)
271 PF09673 TrbC_Ftype: Type-F co 43.8 86 0.0019 20.1 5.7 69 34-112 12-80 (113)
272 cd03045 GST_N_Delta_Epsilon GS 42.3 64 0.0014 18.2 5.2 20 51-70 2-21 (74)
273 PF13417 GST_N_3: Glutathione 41.4 16 0.00034 21.2 1.1 17 53-69 2-18 (75)
274 PF00255 GSHPx: Glutathione pe 40.5 25 0.00055 22.6 2.0 41 43-85 18-58 (108)
275 PF06491 Disulph_isomer: Disul 40.2 55 0.0012 21.9 3.6 92 47-147 35-132 (136)
276 PF04592 SelP_N: Selenoprotein 39.9 24 0.00052 26.1 2.0 56 30-87 11-71 (238)
277 PRK10903 peptidyl-prolyl cis-t 39.7 73 0.0016 22.5 4.5 21 48-68 39-60 (190)
278 PF13956 Ibs_toxin: Toxin Ibs, 39.5 15 0.00033 15.6 0.6 13 6-18 4-16 (19)
279 cd03022 DsbA_HCCA_Iso DsbA fam 39.3 32 0.0007 23.6 2.6 19 96-122 162-180 (192)
280 TIGR02652 conserved hypothetic 38.4 12 0.00026 25.3 0.3 14 56-69 10-23 (163)
281 PF09654 DUF2396: Protein of u 38.2 12 0.00025 25.3 0.2 13 57-69 8-20 (161)
282 PRK15346 outer membrane secret 36.5 99 0.0021 25.4 5.3 52 1-52 1-58 (499)
283 TIGR03516 ppisom_GldI peptidyl 35.8 75 0.0016 22.2 4.0 19 6-24 5-23 (177)
284 TIGR01004 PulS_OutS lipoprotei 35.8 94 0.002 20.7 4.1 20 4-23 7-26 (128)
285 COG4752 Uncharacterized protei 35.0 47 0.001 22.9 2.7 34 28-64 118-151 (190)
286 PRK09810 entericidin A; Provis 35.0 55 0.0012 17.2 2.4 20 1-20 1-21 (41)
287 PF01323 DSBA: DSBA-like thior 34.4 33 0.00071 23.5 2.0 26 50-75 2-27 (193)
288 PF11211 DUF2997: Protein of u 34.3 81 0.0018 17.0 3.7 15 108-122 3-17 (48)
289 PRK15312 antimicrobial resista 34.1 49 0.0011 25.3 2.9 35 27-61 248-291 (298)
290 KOG1364|consensus 34.0 69 0.0015 25.1 3.8 38 96-145 149-187 (356)
291 cd03052 GST_N_GDAP1 GST_N fami 33.7 63 0.0014 18.6 2.9 19 51-69 2-20 (73)
292 PF11760 CbiG_N: Cobalamin syn 33.0 1.2E+02 0.0026 18.6 4.4 35 104-147 38-73 (84)
293 PF07148 MalM: Maltose operon 32.9 43 0.00092 22.5 2.2 19 103-121 32-50 (135)
294 PF07411 DUF1508: Domain of un 32.0 89 0.0019 16.8 4.1 33 104-146 5-37 (49)
295 cd03034 ArsC_ArsC Arsenate Red 30.7 1.1E+02 0.0024 19.4 3.9 32 51-88 2-33 (112)
296 TIGR00548 lolB outer membrane 30.6 53 0.0012 23.4 2.6 17 4-20 3-19 (202)
297 PF07895 DUF1673: Protein of u 28.8 17 0.00037 26.1 -0.2 12 55-66 11-22 (205)
298 TIGR02747 TraV type IV conjuga 28.4 43 0.00094 22.8 1.7 23 1-23 1-23 (144)
299 COG5270 PUA domain (predicted 28.1 15 0.00032 26.1 -0.6 16 46-61 5-20 (202)
300 COG3056 Uncharacterized lipopr 27.8 58 0.0012 23.2 2.3 48 96-145 133-180 (204)
301 PHA03357 Alkaline exonuclease; 27.5 11 0.00024 22.4 -1.1 18 55-72 10-27 (81)
302 cd03025 DsbA_FrnE_like DsbA fa 27.2 43 0.00093 23.0 1.6 26 50-75 3-28 (193)
303 PRK14864 putative biofilm stre 26.6 68 0.0015 20.5 2.3 19 1-19 3-21 (104)
304 COG0266 Nei Formamidopyrimidin 26.5 18 0.00039 27.3 -0.4 8 55-62 265-272 (273)
305 PF14369 zf-RING_3: zinc-finge 26.1 18 0.0004 18.1 -0.3 9 56-64 3-11 (35)
306 PF00879 Defensin_propep: Defe 25.7 1.2E+02 0.0026 16.8 2.8 13 44-56 37-49 (52)
307 COG3565 Predicted dioxygenase 25.4 86 0.0019 20.6 2.6 26 104-140 111-136 (138)
308 cd08344 MhqB_like_N N-terminal 25.2 89 0.0019 19.2 2.7 18 106-123 93-110 (112)
309 cd03054 GST_N_Metaxin GST_N fa 24.7 49 0.0011 18.7 1.3 16 55-70 13-28 (72)
310 PF15240 Pro-rich: Proline-ric 24.4 78 0.0017 22.4 2.4 10 11-20 8-17 (179)
311 PF05228 CHASE4: CHASE4 domain 24.2 1.3E+02 0.0029 19.8 3.6 15 104-118 50-64 (161)
312 PRK13620 psbV cytochrome c-550 23.8 9.5 0.00021 27.5 -2.2 9 55-63 112-120 (215)
313 PRK14811 formamidopyrimidine-D 23.5 17 0.00038 27.2 -1.0 12 55-66 255-266 (269)
314 PF11238 DUF3039: Protein of u 23.5 1.4E+02 0.0031 16.9 2.9 31 36-66 14-55 (58)
315 PF13103 TonB_2: TonB C termin 23.3 1.3E+02 0.0028 17.6 3.1 31 107-147 31-62 (85)
316 PRK11162 mltA murein transglyc 22.1 2E+02 0.0043 22.7 4.5 16 56-71 76-91 (355)
317 KOG4070|consensus 22.0 13 0.00029 25.5 -1.6 23 43-65 28-50 (180)
318 TIGR00014 arsC arsenate reduct 21.4 65 0.0014 20.6 1.5 32 51-88 2-33 (114)
319 PF05198 IF3_N: Translation in 21.1 1.2E+02 0.0026 18.0 2.5 39 27-65 22-60 (76)
320 PF10731 Anophelin: Thrombin i 20.9 1.7E+02 0.0037 16.7 2.9 17 4-20 4-21 (65)
321 PLN02402 cytidine deaminase 20.9 1.7E+02 0.0036 22.6 3.8 33 37-69 81-115 (303)
322 PF11023 DUF2614: Protein of u 20.9 37 0.00079 22.1 0.2 8 56-63 86-93 (114)
323 PF11576 DUF3236: Protein of u 20.8 64 0.0014 21.9 1.4 47 96-147 101-148 (154)
324 KOG1794|consensus 20.5 1.5E+02 0.0033 22.9 3.4 43 105-147 15-57 (336)
325 COG0295 Cdd Cytidine deaminase 20.5 2.6E+02 0.0056 18.8 4.2 16 55-70 85-100 (134)
326 TIGR00995 3a0901s06TIC22 chlor 20.2 1.7E+02 0.0038 22.1 3.7 46 99-146 79-126 (270)
No 1
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.94 E-value=1.4e-26 Score=153.39 Aligned_cols=120 Identities=31% Similarity=0.518 Sum_probs=101.4
Q ss_pred CCCCcccce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEEEecCCCCCC-CCCCCCCCC
Q psy17681 25 GFGGHINWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNISDDEEP-QDPKYAPDG 101 (148)
Q Consensus 25 ~~~~~i~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~~~-~~~~~~v~~ 101 (148)
++|++++|. +++++++.|++++|||+|+|+++||++|+.|+..+.+.++..+ .+++||.++++.+..+ .....+ .+
T Consensus 1 g~~~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~ 79 (130)
T cd02960 1 GWGDDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QY 79 (130)
T ss_pred CCcccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cc
Confidence 357889998 8999999999999999999999999999999998877777655 4468987666653221 111222 34
Q ss_pred CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 102 DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 102 ~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+||++|+|++|+++.++.|..+.+.|.|++.+.+.|.+-|++|+
T Consensus 80 --vPtivFld~~g~vi~~i~Gy~~~~~~~y~~~~~~~~~~~m~~a~ 123 (130)
T cd02960 80 --VPRIMFVDPSLTVRADITGRYSNRLYTYEPADIPLLIENMKKAL 123 (130)
T ss_pred --cCeEEEECCCCCCcccccccccCccceeCcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999996
No 2
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.94 E-value=2e-26 Score=151.57 Aligned_cols=116 Identities=48% Similarity=0.988 Sum_probs=102.1
Q ss_pred cccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEE
Q psy17681 29 HINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRIL 108 (148)
Q Consensus 29 ~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~ 108 (148)
+|.|.+++++++.++.++||++|+|||+||++|+.|.|.+.+.+.......+|+.++++.+.......|++.+.++||++
T Consensus 2 ~i~w~~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~ 81 (117)
T cd02959 2 HIHWVTLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRIL 81 (117)
T ss_pred cccceeHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEE
Confidence 58899999999999999999999999999999999999999887766666689999999765444457888766699999
Q ss_pred EECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 109 YFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 109 ~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
|++++|+++.++.+..+...+.+|+...+.+.+.|+
T Consensus 82 f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 117 (117)
T cd02959 82 FLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTESMK 117 (117)
T ss_pred EECCCCCCchhhccCCCCccccccCCCHHHHHhhcC
Confidence 999999999999999999999999999988887663
No 3
>KOG0910|consensus
Probab=99.86 E-value=7.5e-22 Score=132.26 Aligned_cols=107 Identities=20% Similarity=0.246 Sum_probs=91.2
Q ss_pred CcccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceE
Q psy17681 28 GHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRI 107 (148)
Q Consensus 28 ~~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~ 107 (148)
..+++.+..+--+...+++.||+|+|||+||+||+.+.|.+++....+.+.-++..+|+|.. .+...+|+|.. +||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-~ela~~Y~I~a--vPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-PELAEDYEISA--VPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-cchHhhcceee--eeEE
Confidence 35566665666666678899999999999999999999999988877766667788888863 55666999999 9999
Q ss_pred EEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 108 LYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 108 ~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
++|+ +|+.+.+++| ..+.+.|.+.+++.+.
T Consensus 120 lvfk-nGe~~d~~vG----------~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFK-NGEKVDRFVG----------AVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEE-CCEEeeeecc----------cCCHHHHHHHHHHHhc
Confidence 9998 9999999999 9999999999998763
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.86 E-value=1.5e-21 Score=126.86 Aligned_cols=98 Identities=10% Similarity=0.190 Sum_probs=85.4
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAK 124 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~ 124 (148)
.+++++|+|||+||++|+.|.|.+.+++..+.....|+.+|+|.. +....+|+|.+ +||++++. +|+.+.+..|..
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V~~--iPTf~~fk-~G~~v~~~~G~~ 88 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYELYD--PPTVMFFF-RNKHMKIDLGTG 88 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCCCC--CCEEEEEE-CCEEEEEEcCCC
Confidence 588999999999999999999999988776654346788888874 45556999999 99999998 999999999999
Q ss_pred CccccccccCChhHHHHHHHhh
Q psy17681 125 SPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.+....+.+.+.+++++-++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 89 NNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred CCceEEEecCcHHHHHHHHHHH
Confidence 9999999999999999888765
No 5
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.84 E-value=1.6e-20 Score=124.62 Aligned_cols=102 Identities=23% Similarity=0.489 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcC-CCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCc--EEEecCCCCC------------CCCCCCC
Q psy17681 35 LDAGLQAAKTSG-KPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKF--EMVNISDDEE------------PQDPKYA 98 (148)
Q Consensus 35 ~~~~~~~a~~~~-k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~--v~v~v~~~~~------------~~~~~~~ 98 (148)
+.+.++.+++++ |+++|+|||+||++|+++.+.+........ ...++ +.+|++.+.. ....+|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 456788889999 999999999999999999999986555432 22345 4466654311 1122889
Q ss_pred CCCCccceEEEECCC-CceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 99 PDGDYVPRILYFGPQ-GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 99 v~~~~~Pt~~~~~~~-G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
+.+ +||+++++++ |+++.++.| +.+.+.+.+.++.+++
T Consensus 82 v~~--~Pt~~~~~~~gg~~~~~~~G----------~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 82 VRF--TPTVIFLDPEGGKEIARLPG----------YLPPDEFLAYLEYVQE 120 (125)
T ss_pred Ccc--ccEEEEEcCCCCceeEEecC----------CCCHHHHHHHHHHHHh
Confidence 999 9999999999 899999999 8888999988888753
No 6
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.84 E-value=9.8e-21 Score=128.44 Aligned_cols=96 Identities=22% Similarity=0.481 Sum_probs=78.5
Q ss_pred HHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC-CCCCCCCCCCCccceEEEECCCCceee
Q psy17681 40 QAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE-PQDPKYAPDGDYVPRILYFGPQGEPKS 118 (148)
Q Consensus 40 ~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~-~~~~~~~v~~~~~Pt~~~~~~~G~~~~ 118 (148)
+.+..+||+++|+|||+||++|+.+.|.+.+....+.....|+.++++.+.. ....+|++.+ +||+++++++|+++.
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--iPt~v~~~~~G~~v~ 91 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--IPHFVFLDREGNEEG 91 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--CCEEEEECCCCCEEE
Confidence 3445679999999999999999999999998776655444678888886432 2234899999 999999999999999
Q ss_pred eecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 119 QVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 119 ~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++.| ..+.++|.+.+++.+
T Consensus 92 ~~~G----------~~~~~~l~~~l~~l~ 110 (142)
T cd02950 92 QSIG----------LQPKQVLAQNLDALV 110 (142)
T ss_pred EEeC----------CCCHHHHHHHHHHHH
Confidence 9999 888888888887764
No 7
>PHA02278 thioredoxin-like protein
Probab=99.83 E-value=8.9e-21 Score=121.87 Aligned_cols=85 Identities=13% Similarity=0.250 Sum_probs=68.7
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC---CCCCCCCCCCCCccceEEEECCCCceeeee
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE---EPQDPKYAPDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~---~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
.++++++|+|||+||++|+.|.|.+.+.+........|+.+|+|.++ +....+|+|.+ +||++++. +|+.+.++
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~--iPT~i~fk-~G~~v~~~ 88 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS--TPVLIGYK-DGQLVKKY 88 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc--ccEEEEEE-CCEEEEEE
Confidence 47999999999999999999999998876553333467889998753 23334899999 99999998 89999999
Q ss_pred cCCCCccccccccCChhHHHH
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQ 141 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~ 141 (148)
.| ..+.+.|.+
T Consensus 89 ~G----------~~~~~~l~~ 99 (103)
T PHA02278 89 ED----------QVTPMQLQE 99 (103)
T ss_pred eC----------CCCHHHHHh
Confidence 99 666666544
No 8
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.83 E-value=4.6e-20 Score=122.12 Aligned_cols=85 Identities=21% Similarity=0.356 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHH-hhcCCcEEEecCCCCCCCCC---------CCCCCCCccc
Q psy17681 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIA-ELAPKFEMVNISDDEEPQDP---------KYAPDGDYVP 105 (148)
Q Consensus 36 ~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~v~v~v~~~~~~~~~---------~~~v~~~~~P 105 (148)
+++++.|++++|||+|+|+|+||++|+.|++.....+++. ..+++|+.+.+|.++.+... .|++.| +|
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G--~P 82 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG--WP 82 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC--CC
Confidence 4678889999999999999999999999988766665554 45678977776665433322 368889 99
Q ss_pred eEEEECCCCceeeeecC
Q psy17681 106 RILYFGPQGEPKSQVFN 122 (148)
Q Consensus 106 t~~~~~~~G~~~~~~~G 122 (148)
+++|++++|+++....+
T Consensus 83 t~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 83 LNVFLTPDLKPFFGGTY 99 (124)
T ss_pred EEEEECCCCCEEeeeee
Confidence 99999999999987755
No 9
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.80 E-value=1.5e-19 Score=116.28 Aligned_cols=95 Identities=18% Similarity=0.398 Sum_probs=71.9
Q ss_pred HHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcE--EEecCCCCCC---CCCCCCCCCCccceEEEEC
Q psy17681 38 GLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFE--MVNISDDEEP---QDPKYAPDGDYVPRILYFG 111 (148)
Q Consensus 38 ~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v--~v~v~~~~~~---~~~~~~v~~~~~Pt~~~~~ 111 (148)
.++.+.++||+++|.||++||++|+.+.+.+.+.+.... ..+++. .+|++.++.. ...+|++.+ +||+++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~--~Pti~~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG--PPTYLFYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC--CCEEEEEC
Confidence 455667789999999999999999999998865444332 232554 4555543211 123899999 99999999
Q ss_pred C-CCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 112 P-QGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 112 ~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
+ +|+++.++.| +.+.++|.+.++
T Consensus 81 ~~~g~~~~~~~G----------~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPG----------FLTADEFLEALE 104 (104)
T ss_pred CCCCCCCccccc----------ccCHHHHHHHhC
Confidence 8 8999999999 888988887763
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.79 E-value=9.9e-19 Score=114.37 Aligned_cols=102 Identities=18% Similarity=0.192 Sum_probs=85.2
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHH-HhhcCCcEEEecCCCCCCCC---CCCCCCCCccceEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEI-AELAPKFEMVNISDDEEPQD---PKYAPDGDYVPRILY 109 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~-~~~~~~~v~v~v~~~~~~~~---~~~~v~~~~~Pt~~~ 109 (148)
+++++++.|++++|+++|+|+++||++|+.|...+...+.. ...+.+||.+.++.++++.. ..|++.+ +|++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~--~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK--YPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC--CCeEEE
Confidence 68899999999999999999999999999997755555554 45667888866665433222 2889999 999999
Q ss_pred ECC-CCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 110 FGP-QGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 110 ~~~-~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+++ +|+++.++.| +.+++++++.|+++.
T Consensus 83 i~~~~g~~l~~~~G----------~~~~~~f~~~L~~~~ 111 (114)
T cd02958 83 IDPRTGEVLKVWSG----------NITPEDLLSQLIEFL 111 (114)
T ss_pred EeCccCcEeEEEcC----------CCCHHHHHHHHHHHH
Confidence 999 8999999999 999999999999885
No 11
>KOG0907|consensus
Probab=99.78 E-value=3e-19 Score=115.08 Aligned_cols=83 Identities=24% Similarity=0.444 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCC
Q psy17681 35 LDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQG 114 (148)
Q Consensus 35 ~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G 114 (148)
++.....+...+|+++|+|||+|||+|+.+.|.+.+++..+.. ..|+.+|+|+ .......+++.+ +||++|+. +|
T Consensus 10 ~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde-~~~~~~~~~V~~--~PTf~f~k-~g 84 (106)
T KOG0907|consen 10 LDLVLSAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE-LEEVAKEFNVKA--MPTFVFYK-GG 84 (106)
T ss_pred HHHHHHHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc-CHhHHHhcCceE--eeEEEEEE-CC
Confidence 3444445555679999999999999999999999998888876 7888899998 455556999999 99999996 99
Q ss_pred ceeeeecC
Q psy17681 115 EPKSQVFN 122 (148)
Q Consensus 115 ~~~~~~~G 122 (148)
+.+.+++|
T Consensus 85 ~~~~~~vG 92 (106)
T KOG0907|consen 85 EEVDEVVG 92 (106)
T ss_pred EEEEEEec
Confidence 99999999
No 12
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.78 E-value=5.3e-19 Score=113.17 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=66.0
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
..+||+++|.|||+||++|+.+.|.+.+.++.+.. ..++.+|.+........+|++.+ +||+++++ +| .+.++.|
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~~~l~~~~~V~~--~PT~~lf~-~g-~~~~~~G 89 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIKPSLLSRYGVVG--FPTILLFN-ST-PRVRYNG 89 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCCHHHHHhcCCee--cCEEEEEc-CC-ceeEecC
Confidence 36799999999999999999999999988766542 34555655522333345899999 99999998 66 7788999
Q ss_pred CCCccccccccCChhHHHHH
Q psy17681 123 AKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~ 142 (148)
..+.++|.++
T Consensus 90 ----------~~~~~~l~~f 99 (100)
T cd02999 90 ----------TRTLDSLAAF 99 (100)
T ss_pred ----------CCCHHHHHhh
Confidence 7777777665
No 13
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.78 E-value=2.9e-19 Score=114.93 Aligned_cols=83 Identities=16% Similarity=0.232 Sum_probs=63.1
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC--CCCCCCCCCCCccceEEEEC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE--PQDPKYAPDGDYVPRILYFG 111 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~--~~~~~~~v~~~~~Pt~~~~~ 111 (148)
++++.+.. ..|++++|+|||+||++|+.+.|.+.+++..+ ....|+.+|++.+.. ....+|+|.+ +||++++
T Consensus 5 ~~~~~i~~--~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~--~Pt~~~~- 78 (103)
T cd02985 5 ELDEALKK--AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE--VPHFLFY- 78 (103)
T ss_pred HHHHHHHH--cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc--CCEEEEE-
Confidence 45555543 34999999999999999999999998876655 223456677665321 2233899999 9999888
Q ss_pred CCCceeeeecC
Q psy17681 112 PQGEPKSQVFN 122 (148)
Q Consensus 112 ~~G~~~~~~~G 122 (148)
++|+++.++.|
T Consensus 79 ~~G~~v~~~~G 89 (103)
T cd02985 79 KDGEKIHEEEG 89 (103)
T ss_pred eCCeEEEEEeC
Confidence 59999999999
No 14
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.78 E-value=7.8e-19 Score=112.74 Aligned_cols=91 Identities=12% Similarity=0.232 Sum_probs=69.2
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
++...+++++++|+|||+||++|+.+.|.+......+... ..|+.+|+| +.....+|++++ +||++++. +|+++
T Consensus 10 ~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v~~--~Pt~~~~~-~g~~~ 84 (102)
T cd02948 10 WEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRGKC--EPTFLFYK-NGELV 84 (102)
T ss_pred HHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCCCc--CcEEEEEE-CCEEE
Confidence 3344457999999999999999999999997765544422 135556666 344455999999 99999996 99999
Q ss_pred eeecCCCCccccccccCChhHHHHHHHh
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
.++.| . +.+.+.+.+++
T Consensus 85 ~~~~G----------~-~~~~~~~~i~~ 101 (102)
T cd02948 85 AVIRG----------A-NAPLLNKTITE 101 (102)
T ss_pred EEEec----------C-ChHHHHHHHhh
Confidence 99999 4 46777777654
No 15
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.77 E-value=1.1e-18 Score=112.81 Aligned_cols=108 Identities=9% Similarity=0.196 Sum_probs=86.9
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
++++++..+ ++|+|+|.|+|+||++|+.|+|.+.+++..++....|..+|+|+. ++....|++.+ .||++|+. +
T Consensus 4 ~~d~~i~~~--~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-~dva~~y~I~a--mPtfvffk-n 77 (114)
T cd02986 4 EVDQAIKST--AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-PVYTQYFDISY--IPSTIFFF-N 77 (114)
T ss_pred HHHHHHHhc--CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-HHHHHhcCcee--CcEEEEEE-C
Confidence 345555544 699999999999999999999999988776643245666888753 34455999999 99999887 8
Q ss_pred CceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 114 GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
|+-+.-=.|+....-.++.+.+.+++++-++.+-
T Consensus 78 gkh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~y 111 (114)
T cd02986 78 GQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY 111 (114)
T ss_pred CcEEEEecCCCCCcEEEEEcCchhHHHHHHHHHH
Confidence 8888777898888999999999999998887653
No 16
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.76 E-value=1.4e-18 Score=110.09 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=66.3
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
.++++++|+|||+||++|+.+.|.+.+........-.++.+|++.+ .....+|++.+ +||+++++ +|+.+.++.|
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i~~--~Pt~~~~~-~g~~~~~~~g- 84 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGVQA--LPTVYLFA-AGQPVDGFQG- 84 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCCCC--CCEEEEEe-CCEEeeeecC-
Confidence 3488999999999999999999999776655433223344665542 23334899999 99999998 9999999999
Q ss_pred CCccccccccCChhHHHHHH
Q psy17681 124 KSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l 143 (148)
..+.++|.+++
T Consensus 85 ---------~~~~~~l~~~l 95 (96)
T cd02956 85 ---------AQPEEQLRQML 95 (96)
T ss_pred ---------CCCHHHHHHHh
Confidence 77788887765
No 17
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.75 E-value=5.6e-18 Score=137.29 Aligned_cols=103 Identities=23% Similarity=0.478 Sum_probs=81.5
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCC---CCCCCCCCccceEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQD---PKYAPDGDYVPRIL 108 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~---~~~~v~~~~~Pt~~ 108 (148)
+++++++.++.+||+|+|+|||+||++|+.+++.+.+.++..+..+++ +.+|++++++... .+|++.+ +||++
T Consensus 462 ~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g--~Pt~~ 539 (571)
T PRK00293 462 ELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLG--LPTIL 539 (571)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCC--CCEEE
Confidence 456888888889999999999999999999988866555544332344 5577776543322 3899999 99999
Q ss_pred EECCCCcee--eeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 109 YFGPQGEPK--SQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 109 ~~~~~G~~~--~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
+++++|+++ .++.| +.+.+++.+.++++.+
T Consensus 540 ~~~~~G~~i~~~r~~G----------~~~~~~f~~~L~~~~~ 571 (571)
T PRK00293 540 FFDAQGQEIPDARVTG----------FMDAAAFAAHLRQLQP 571 (571)
T ss_pred EECCCCCCcccccccC----------CCCHHHHHHHHHHhcC
Confidence 999999984 78899 8899999999998753
No 18
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=3.6e-18 Score=115.45 Aligned_cols=96 Identities=16% Similarity=0.311 Sum_probs=74.2
Q ss_pred HHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 38 GLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 38 ~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
.++...+++++++|+||++||++|+.+.|.+.+........-.++.+|++.+ .....+|++.+ +||+++++ +|+++
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~~l~~~~~V~~--~Ptlii~~-~G~~v 119 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-RELSARFRIRS--IPTIMIFK-NGQVV 119 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-HHHHHhcCCCc--cCEEEEEE-CCEEE
Confidence 4444556799999999999999999999998776554433223445655542 23334899999 99999986 99999
Q ss_pred eeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.++.| ..+.+.+.+++++++
T Consensus 120 ~~~~G----------~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 120 DMLNG----------AVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEcC----------CCCHHHHHHHHHHhC
Confidence 99999 888999999998874
No 19
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.75 E-value=1.9e-18 Score=112.73 Aligned_cols=86 Identities=10% Similarity=0.011 Sum_probs=67.3
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC-CCCCCCCCccceEEEECCCCceeeeec
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD-PKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
.+++++++|.|||+||++|+.+.|.+.++++..+....|+.+|.+.+. ... .+|+|.+ +||+.++. +|+...++.
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~--~PTl~lf~-~g~~~~~y~ 101 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFY--FPVIHLYY-RSRGPIEYK 101 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcc--cCEEEEEE-CCccceEEe
Confidence 567999999999999999999999999888776543345667666532 233 4799999 99999995 888888888
Q ss_pred CCCCccccccccCChhHHHHH
Q psy17681 122 NAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 122 G~~~~~~~~~~~~~~~~l~~~ 142 (148)
| ..+.+.|..+
T Consensus 102 G----------~~~~~~i~~~ 112 (113)
T cd03006 102 G----------PMRAPYMEKF 112 (113)
T ss_pred C----------CCCHHHHHhh
Confidence 9 6667776654
No 20
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=99.75 E-value=2.9e-18 Score=117.43 Aligned_cols=114 Identities=25% Similarity=0.433 Sum_probs=71.0
Q ss_pred CCcccce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHH-hhcCCcEEEecCCCCCCCCC-CC------
Q psy17681 27 GGHINWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIA-ELAPKFEMVNISDDEEPQDP-KY------ 97 (148)
Q Consensus 27 ~~~i~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~v~v~v~~~~~~~~~-~~------ 97 (148)
...|+|. ..+++++.|++++|||+|.++++||++|+.|+....+++++. -.+++||.|.+|.++.+..+ .|
T Consensus 17 ~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~ 96 (163)
T PF03190_consen 17 HNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQA 96 (163)
T ss_dssp TSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHH
T ss_pred cCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHH
Confidence 4679999 447999999999999999999999999999987666666654 57789999999987766544 33
Q ss_pred --CCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 98 --APDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 98 --~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
+..| +|+++|++++|+++.. |.+-++.-.+...+..+++..+.
T Consensus 97 ~~~~gG--wPl~vfltPdg~p~~~--~tY~P~~~~~g~~~f~~~l~~i~ 141 (163)
T PF03190_consen 97 MSGSGG--WPLTVFLTPDGKPFFG--GTYFPPEDRYGRPGFLQLLERIA 141 (163)
T ss_dssp HHS-----SSEEEEE-TTS-EEEE--ESS--SS-BTTB--HHHHHHHHH
T ss_pred hcCCCC--CCceEEECCCCCeeee--eeecCCCCCCCCccHHHHHHHHH
Confidence 6677 9999999999999985 43333322222333444444443
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.74 E-value=4e-18 Score=111.07 Aligned_cols=88 Identities=17% Similarity=0.276 Sum_probs=70.4
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
..++|++|+|||+||++|+.+.|.+.+........ ..+..+|++.+ .....++++.+ +||+++++ +|+.+.+..|
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V~~--~Pt~~i~~-~g~~~~~~~G 97 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGAHS--VPAIVGII-NGQVTFYHDS 97 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCCcc--CCEEEEEE-CCEEEEEecC
Confidence 46899999999999999999999998877766543 24455666643 23334899999 99999996 9999999999
Q ss_pred CCCccccccccCChhHHHHHHHh
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
..+.+.|.+++++
T Consensus 98 ----------~~~~~~l~~~i~~ 110 (111)
T cd02963 98 ----------SFTKQHVVDFVRK 110 (111)
T ss_pred ----------CCCHHHHHHHHhc
Confidence 7788888888765
No 22
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=1.6e-17 Score=113.50 Aligned_cols=96 Identities=14% Similarity=0.228 Sum_probs=67.5
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCC------CCCccceEEEECCCCce
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAP------DGDYVPRILYFGPQGEP 116 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v------~~~~~Pt~~~~~~~G~~ 116 (148)
.++++++|+|||+||++|+.+.|.+.+.+..+... -.|+.+|+++. +....+|++ ++ +||++++. +|++
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~--~PT~ilf~-~Gk~ 120 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQ--LPTIILFQ-GGKE 120 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCC--CCEEEEEE-CCEE
Confidence 34679999999999999999999998877665432 24566777763 222234554 55 99999997 9999
Q ss_pred eeeecCCCC-ccccccccCChhHHHHHH
Q psy17681 117 KSQVFNAKS-PQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 117 ~~~~~G~~~-~~~~~~~~~~~~~l~~~l 143 (148)
+.+..|... +....-...+.+++...+
T Consensus 121 v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 121 VARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred EEEEeccccCccccccccccHHHHHHhc
Confidence 999999333 344444444556665543
No 23
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.74 E-value=8.8e-19 Score=108.23 Aligned_cols=80 Identities=29% Similarity=0.714 Sum_probs=63.4
Q ss_pred cce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEEEecCCCCCCCCCCCCCCCCccceEE
Q psy17681 31 NWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNISDDEEPQDPKYAPDGDYVPRIL 108 (148)
Q Consensus 31 ~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~ 108 (148)
+|. +++++++.|+++|||++|+|+++||++|+.|...+.+.+...+ .+++||.+.+|.++......+...+ +|+++
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~--~P~~~ 78 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQG--YPTFF 78 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCS--SSEEE
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCcc--CCEEE
Confidence 477 7999999999999999999999999999999999988888766 6778988666653322222233356 99999
Q ss_pred EECC
Q psy17681 109 YFGP 112 (148)
Q Consensus 109 ~~~~ 112 (148)
|+||
T Consensus 79 ~ldp 82 (82)
T PF13899_consen 79 FLDP 82 (82)
T ss_dssp EEET
T ss_pred EeCC
Confidence 9985
No 24
>PRK09381 trxA thioredoxin; Provisional
Probab=99.73 E-value=1.3e-17 Score=107.97 Aligned_cols=91 Identities=18% Similarity=0.374 Sum_probs=74.3
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
+.+++++|+||++||++|+.+.|.+.+........-.+..+|++.. .....+|++.+ +||+++++ +|+++.+..|
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~--~Pt~~~~~-~G~~~~~~~G- 93 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-PGTAPKYGIRG--IPTLLLFK-NGEVAATKVG- 93 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-hhHHHhCCCCc--CCEEEEEe-CCeEEEEecC-
Confidence 4588999999999999999999999987766554334566777653 23334899999 99999995 9999999999
Q ss_pred CCccccccccCChhHHHHHHHhhhC
Q psy17681 124 KSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
..+.++|.+.+++.|+
T Consensus 94 ---------~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 94 ---------ALSKGQLKEFLDANLA 109 (109)
T ss_pred ---------CCCHHHHHHHHHHhcC
Confidence 7889999999988774
No 25
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.73 E-value=5.8e-18 Score=113.99 Aligned_cols=108 Identities=9% Similarity=0.139 Sum_probs=78.4
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
++++++.. .++++++|+|||+||++|+.+.|.+.+.++.......|+.+|+|+. ++....|++.+ .|+++++-++
T Consensus 13 e~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-~dla~~y~I~~--~~t~~~ffk~ 87 (142)
T PLN00410 13 AVDQAILA--EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-PDFNTMYELYD--PCTVMFFFRN 87 (142)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-HHHHHHcCccC--CCcEEEEEEC
Confidence 55666552 3688999999999999999999999887766543335577888863 44556999997 8777744348
Q ss_pred Cc-eeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 114 GE-PKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 114 G~-~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
|+ .+.+..|. ..-.++...+.++|.+.++..++
T Consensus 88 g~~~vd~~tG~--~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 88 KHIMIDLGTGN--NNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred CeEEEEEeccc--ccccccccCCHHHHHHHHHHHHH
Confidence 88 88887772 22334456788899888887653
No 26
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.73 E-value=9.1e-18 Score=107.37 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=65.5
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
.+++++++|.|||+||++|+++.|.+.+++......-.|..+|.+.+ .....++++.+ +||++++. +|+...++.|
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G 90 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-RMLCRSQGVNS--YPSLYVFP-SGMNPEKYYG 90 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-HHHHHHcCCCc--cCEEEEEc-CCCCcccCCC
Confidence 34579999999999999999999999988776654334455666653 23334899999 99999995 8988888889
Q ss_pred CCCccccccccCChhHHHH
Q psy17681 123 AKSPQVYRHYYYDVPSIVQ 141 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~ 141 (148)
..+.+.|.+
T Consensus 91 ----------~~~~~~l~~ 99 (101)
T cd03003 91 ----------DRSKESLVK 99 (101)
T ss_pred ----------CCCHHHHHh
Confidence 666666654
No 27
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.72 E-value=3.5e-17 Score=112.08 Aligned_cols=90 Identities=13% Similarity=0.215 Sum_probs=67.6
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC----------CCC--CCC---CCCCCccceEE
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE----------PQD--PKY---APDGDYVPRIL 108 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~----------~~~--~~~---~v~~~~~Pt~~ 108 (148)
..++..+|+|||+||++|+++.|.+.+..+.+. ..++.+++|.... ... ..| ++.+ +||++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~--iPTt~ 123 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVV--TPATF 123 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCC--CCeEE
Confidence 347788999999999999999999987765542 3566677775321 001 134 6778 99999
Q ss_pred EECCCCce-eeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 109 YFGPQGEP-KSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 109 ~~~~~G~~-~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++|++|++ ...+.| ..+.+++.+.+++.|
T Consensus 124 LID~~G~~i~~~~~G----------~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 124 LVNVNTRKAYPVLQG----------AVDEAELANRMDEIL 153 (153)
T ss_pred EEeCCCCEEEEEeec----------ccCHHHHHHHHHHhC
Confidence 99999886 456889 888888888887754
No 28
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.72 E-value=3e-17 Score=118.69 Aligned_cols=98 Identities=13% Similarity=0.242 Sum_probs=70.3
Q ss_pred eHHHHHHHHH-hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECC
Q psy17681 34 SLDAGLQAAK-TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGP 112 (148)
Q Consensus 34 ~~~~~~~~a~-~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~ 112 (148)
++++.+.... ..+++++|+|||+||++|+.+.|.+.+.+...+....+..+|.+.+ .....+|+|.+ +||+++++
T Consensus 39 nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~l~~~~~I~~--~PTl~~f~- 114 (224)
T PTZ00443 39 NFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LNLAKRFAIKG--YPTLLLFD- 114 (224)
T ss_pred HHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HHHHHHcCCCc--CCEEEEEE-
Confidence 5665544322 2468999999999999999999999877665543223344554432 22334899999 99999998
Q ss_pred CCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 113 QGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 113 ~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
+|+++....| ..+.+.|.+++.+
T Consensus 115 ~G~~v~~~~G----------~~s~e~L~~fi~~ 137 (224)
T PTZ00443 115 KGKMYQYEGG----------DRSTEKLAAFALG 137 (224)
T ss_pred CCEEEEeeCC----------CCCHHHHHHHHHH
Confidence 8998887788 6677777776654
No 29
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.71 E-value=3.3e-17 Score=106.31 Aligned_cols=79 Identities=11% Similarity=0.277 Sum_probs=59.1
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCC-CCCCCCCCccceEEEECCCCcee
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQD-PKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
.+.+++++++|.||++||++|+++.|.+.+.+...+. .++ ..+|.+.++.... ..|++.+ +||+++++++|...
T Consensus 16 ~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~--~Pti~~f~~~~~~~ 92 (109)
T cd02993 16 KGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKS--FPTILFFPKNSRQP 92 (109)
T ss_pred hhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCc--CCEEEEEcCCCCCc
Confidence 3356789999999999999999999999887766553 234 4466554222222 2589999 99999998777777
Q ss_pred eeecC
Q psy17681 118 SQVFN 122 (148)
Q Consensus 118 ~~~~G 122 (148)
..+.|
T Consensus 93 ~~y~g 97 (109)
T cd02993 93 IKYPS 97 (109)
T ss_pred eeccC
Confidence 77777
No 30
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.71 E-value=1.4e-17 Score=106.97 Aligned_cols=86 Identities=15% Similarity=0.218 Sum_probs=65.8
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
.++++++|.|||+||++|+.+.|.+.+........-.+..+|.+.+ .....+|++.+ +||+++++.+|+...++.|
T Consensus 17 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i~~--~Pt~~~~~~g~~~~~~~~G- 92 (104)
T cd03004 17 NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANIRA--YPTIRLYPGNASKYHSYNG- 92 (104)
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCCCc--ccEEEEEcCCCCCceEccC-
Confidence 4578999999999999999999999887766543334555666643 22334899999 9999999866588999999
Q ss_pred CCccccccccCC-hhHHHHH
Q psy17681 124 KSPQVYRHYYYD-VPSIVQA 142 (148)
Q Consensus 124 ~~~~~~~~~~~~-~~~l~~~ 142 (148)
..+ .++|.++
T Consensus 93 ---------~~~~~~~l~~~ 103 (104)
T cd03004 93 ---------WHRDADSILEF 103 (104)
T ss_pred ---------CCCCHHHHHhh
Confidence 655 6766654
No 31
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.9e-17 Score=121.90 Aligned_cols=101 Identities=16% Similarity=0.384 Sum_probs=79.3
Q ss_pred ccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC-CCCCCCCCCccceEE
Q psy17681 30 INWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ-DPKYAPDGDYVPRIL 108 (148)
Q Consensus 30 i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~-~~~~~v~~~~~Pt~~ 108 (148)
++-.+|.+.+..+ ...+||+|+||+|||++|+.+.|.++++...+++ .|+.+.++.+..+. ..+|+|++ +||++
T Consensus 28 vT~anfe~~V~~~-S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqs--IPtV~ 102 (304)
T COG3118 28 VTEANFEQEVIQS-SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQS--IPTVY 102 (304)
T ss_pred chHhHHHHHHHHH-ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCc--CCeEE
Confidence 3444777666543 3456999999999999999999999987766654 56555555444444 44999999 99999
Q ss_pred EECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 109 YFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 109 ~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.|. +|+++..+.| ..+.+.+.+++++.
T Consensus 103 af~-dGqpVdgF~G----------~qPesqlr~~ld~~ 129 (304)
T COG3118 103 AFK-DGQPVDGFQG----------AQPESQLRQFLDKV 129 (304)
T ss_pred Eee-CCcCccccCC----------CCcHHHHHHHHHHh
Confidence 997 9999999999 88888999888764
No 32
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.70 E-value=1e-16 Score=102.50 Aligned_cols=89 Identities=18% Similarity=0.345 Sum_probs=65.8
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEE--EecCCCCC-CCCCCCCCCCCccceEEEECCCCcee
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEM--VNISDDEE-PQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~--v~v~~~~~-~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
...+++++++|.||++||++|+++.|.+.+..........+.. +|.+.++. ....++++++ +||++++. +|+++
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~--~Pt~~~~~-~g~~~ 88 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG--FPTFKYFE-NGKFV 88 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc--ccEEEEEe-CCCee
Confidence 3344578999999999999999999999887765543334434 55554212 2224899999 99998886 88988
Q ss_pred eeecCCCCccccccccCChhHHHHH
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
.++.| ..+.+.+.++
T Consensus 89 ~~~~g----------~~~~~~l~~~ 103 (104)
T cd02997 89 EKYEG----------ERTAEDIIEF 103 (104)
T ss_pred EEeCC----------CCCHHHHHhh
Confidence 89999 7777777654
No 33
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.70 E-value=1.6e-16 Score=112.20 Aligned_cols=89 Identities=15% Similarity=0.246 Sum_probs=66.9
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC-------------C---------CCCCCCCCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE-------------P---------QDPKYAPDG 101 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~-------------~---------~~~~~~v~~ 101 (148)
.+||+++|+|||+||++|+++.|.+.+... ....++.++++++.. . ....|++.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 369999999999999999999999865432 123456676654211 0 001678888
Q ss_pred CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 102 DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 102 ~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+|+++++|++|+++.++.| ..+.+++.+.++..+
T Consensus 143 --~P~t~vid~~G~i~~~~~G----------~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 143 --APETFLIDGNGIIRYRHAG----------DLNPRVWESEIKPLW 176 (185)
T ss_pred --CCeEEEECCCceEEEEEec----------CCCHHHHHHHHHHHH
Confidence 9999999999999999999 777777777776654
No 34
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.69 E-value=9.4e-17 Score=103.25 Aligned_cols=96 Identities=13% Similarity=0.218 Sum_probs=69.8
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEE--EecCCCCCCCCCCCCCCCCccceEEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEM--VNISDDEEPQDPKYAPDGDYVPRILYF 110 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~--v~v~~~~~~~~~~~~v~~~~~Pt~~~~ 110 (148)
++++.++.++ ++++++|.|||+||++|+++.|.+.+.....+.. ..+.. +|.+.. .....+|++.+ +||++++
T Consensus 4 ~~~~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I~~--~Pt~~l~ 79 (104)
T cd03000 4 DLDDSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGVRG--YPTIKLL 79 (104)
T ss_pred echhhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCCcc--ccEEEEE
Confidence 4566666654 4779999999999999999999998877665432 23433 444432 23334899999 9999999
Q ss_pred CCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 111 GPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 111 ~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
+ +| ...++.| ..+.+.|.+.+++
T Consensus 80 ~-~~-~~~~~~G----------~~~~~~l~~~~~~ 102 (104)
T cd03000 80 K-GD-LAYNYRG----------PRTKDDIVEFANR 102 (104)
T ss_pred c-CC-CceeecC----------CCCHHHHHHHHHh
Confidence 5 45 4566888 7788888888765
No 35
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.69 E-value=6e-17 Score=104.65 Aligned_cols=95 Identities=18% Similarity=0.336 Sum_probs=69.3
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC-CCCCCCCCCCccceEEEECC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP-QDPKYAPDGDYVPRILYFGP 112 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~-~~~~~~v~~~~~Pt~~~~~~ 112 (148)
++++.+ .+.+++++|.|||+||++|+.+.|.+.+.+........++.+|.+.++.. ...+|++.+ +||++++++
T Consensus 9 ~~~~~i---~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~Pt~~~~~~ 83 (109)
T cd03002 9 NFDKVV---HNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--FPTLKVFRP 83 (109)
T ss_pred hHHHHH---hcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--CCEEEEEeC
Confidence 455444 34688999999999999999999999887765543334566777653222 223899999 999999986
Q ss_pred CC----ceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 113 QG----EPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 113 ~G----~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
++ .....+.| ..+.+.|.+++
T Consensus 84 ~~~~~~~~~~~~~G----------~~~~~~l~~fi 108 (109)
T cd03002 84 PKKASKHAVEDYNG----------ERSAKAIVDFV 108 (109)
T ss_pred CCcccccccccccC----------ccCHHHHHHHh
Confidence 65 24566778 67777777765
No 36
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.69 E-value=5.1e-17 Score=106.92 Aligned_cols=97 Identities=10% Similarity=0.076 Sum_probs=77.2
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChh--hh--hhhHhhcCchHHH--hhcCCcEEEecCCCCCCCCCCCCCCCCccceE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAA--CH--ELSPKFAASPEIA--ELAPKFEMVNISDDEEPQDPKYAPDGDYVPRI 107 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~--C~--~~~~~~~~~~~~~--~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~ 107 (148)
+|++.+. +++.+++++||++||++ |+ .+.|.+.+.+..+ .....|+.+|++.+ +....+|+|.+ +||+
T Consensus 18 nF~~~v~---~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-~~La~~~~I~~--iPTl 91 (120)
T cd03065 18 NYKQVLK---KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-AKVAKKLGLDE--EDSI 91 (120)
T ss_pred hHHHHHH---hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-HHHHHHcCCcc--ccEE
Confidence 5665543 45779999999999987 99 7799888877766 44446677888764 44556999999 9999
Q ss_pred EEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 108 LYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 108 ~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
+++. +|+++. +.| ..+.+.|.+++++.++
T Consensus 92 ~lfk-~G~~v~-~~G----------~~~~~~l~~~l~~~~~ 120 (120)
T cd03065 92 YVFK-DDEVIE-YDG----------EFAADTLVEFLLDLIE 120 (120)
T ss_pred EEEE-CCEEEE-eeC----------CCCHHHHHHHHHHHhC
Confidence 9997 999887 999 8899999999987653
No 37
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.68 E-value=1.6e-16 Score=101.39 Aligned_cols=83 Identities=17% Similarity=0.352 Sum_probs=62.4
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcCchHHHhh-cCCcEEEecCCCCCC-CCCCCCCCCCccceEEEECCCCceeeeecCCC
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKFEMVNISDDEEP-QDPKYAPDGDYVPRILYFGPQGEPKSQVFNAK 124 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~v~v~v~~~~~~-~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~ 124 (148)
++++|.|||+||++|+.+.|.+.+.+..... ...+..+.+|.++.. ...+|++.+ +||++++. +|+.+.++.|
T Consensus 17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~Pt~~~~~-~g~~~~~~~G-- 91 (102)
T cd03005 17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG--YPTLLLFK-DGEKVDKYKG-- 91 (102)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc--CCEEEEEe-CCCeeeEeeC--
Confidence 3699999999999999999999988776654 224434444443332 334899999 99999995 8888889999
Q ss_pred CccccccccCChhHHHHH
Q psy17681 125 SPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~ 142 (148)
..+.+.|.++
T Consensus 92 --------~~~~~~l~~~ 101 (102)
T cd03005 92 --------TRDLDSLKEF 101 (102)
T ss_pred --------CCCHHHHHhh
Confidence 7777766554
No 38
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.68 E-value=4.7e-17 Score=103.72 Aligned_cols=95 Identities=19% Similarity=0.404 Sum_probs=73.9
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
++++.+.. ++++++|.||++||++|+.+.|.+.+..........|+.+|.+.. .....+|++.+ +||++++. +
T Consensus 8 ~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~v~~--~Pt~~~~~-~ 80 (103)
T PF00085_consen 8 NFEKFINE---SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-KELCKKYGVKS--VPTIIFFK-N 80 (103)
T ss_dssp THHHHHTT---TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-HHHHHHTTCSS--SSEEEEEE-T
T ss_pred HHHHHHHc---cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-chhhhccCCCC--CCEEEEEE-C
Confidence 44444432 489999999999999999999999988776655334455555532 23334999999 99999997 8
Q ss_pred CceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 114 GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
|+...++.| ..+.+.|.++|++
T Consensus 81 g~~~~~~~g----------~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 81 GKEVKRYNG----------PRNAESLIEFIEK 102 (103)
T ss_dssp TEEEEEEES----------SSSHHHHHHHHHH
T ss_pred CcEEEEEEC----------CCCHHHHHHHHHc
Confidence 999989999 8889999998875
No 39
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.67 E-value=1.5e-16 Score=102.95 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=63.3
Q ss_pred HHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc----CCc--EEEecCCCCCCCCCCCCCCCCccceEEEECCCCc
Q psy17681 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA----PKF--EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGE 115 (148)
Q Consensus 42 a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~----~~~--v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~ 115 (148)
..+++++++|.|||+||++|+++.|.+.+.+...+.. ..+ ..+|.+.+ .....+|++++ +||++++. +|+
T Consensus 14 ~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v~~--~Ptl~~~~-~g~ 89 (108)
T cd02996 14 ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRINK--YPTLKLFR-NGM 89 (108)
T ss_pred HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCCCc--CCEEEEEe-CCc
Confidence 3456889999999999999999999998877654321 124 34555542 23334899999 99999996 787
Q ss_pred -eeeeecCCCCccccccccCChhHHHHH
Q psy17681 116 -PKSQVFNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 116 -~~~~~~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
....+.| ..+.+.|.++
T Consensus 90 ~~~~~~~g----------~~~~~~l~~f 107 (108)
T cd02996 90 MMKREYRG----------QRSVEALAEF 107 (108)
T ss_pred CcceecCC----------CCCHHHHHhh
Confidence 4466778 7777777665
No 40
>smart00594 UAS UAS domain.
Probab=99.67 E-value=5.4e-16 Score=102.63 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=78.5
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHH-HhhcCCcEEEecCCCCCCC---CCCCCCCCCccceEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEI-AELAPKFEMVNISDDEEPQ---DPKYAPDGDYVPRILY 109 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~-~~~~~~~v~v~v~~~~~~~---~~~~~v~~~~~Pt~~~ 109 (148)
+++++++.|++++|+++|+|+++||++|+.+...+...+.. ...+.+||...+|..+.+. ...|++.+ +|++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~--~P~~~~ 92 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS--FPYVAI 92 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC--CCEEEE
Confidence 89999999999999999999999999999997765555554 4566688875544433322 23899999 999999
Q ss_pred ECCCC-----ceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 110 FGPQG-----EPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 110 ~~~~G-----~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
++++| +++.++.| +.+.+++++.|
T Consensus 93 l~~~~g~~~~~~~~~~~G----------~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEG----------EISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccC----------CCCHHHHHHhh
Confidence 99997 46778889 88889888765
No 41
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.67 E-value=1.2e-16 Score=127.33 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=68.9
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC---C-----------------------C-CCCCCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD---D-----------------------E-EPQDPK 96 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~---~-----------------------~-~~~~~~ 96 (148)
+||+++|+|||+||++|+.+.|.+.++...+...+ .++.|.++. + . ......
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 79999999999999999999999988766554222 344454321 0 0 001127
Q ss_pred CCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 97 YAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 97 ~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
|++.+ +||++++|++|+++.++.| +.+.++|.+.++.+
T Consensus 135 fgV~g--iPTt~IIDkdGkIV~~~~G----------~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISV--YPSWAIIGKDGDVQRIVKG----------SISEAQALALIRNP 172 (521)
T ss_pred cCCCC--cCeEEEEcCCCeEEEEEeC----------CCCHHHHHHHHHHh
Confidence 89999 9999999999999999999 88888898888743
No 42
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.67 E-value=1.1e-16 Score=101.80 Aligned_cols=87 Identities=17% Similarity=0.285 Sum_probs=66.7
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
.+.++++++.||++||++|+.+.|.+.+........-.++.+|++.+ +....++++.+ +|++++++ +|+++.++.|
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-~~l~~~~~v~~--vPt~~i~~-~g~~v~~~~g 85 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-QEIAEAAGIMG--TPTVQFFK-DKELVKEISG 85 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-HHHHHHCCCee--ccEEEEEE-CCeEEEEEeC
Confidence 35799999999999999999999998765444332223455665542 23334899999 99999996 8999999999
Q ss_pred CCCccccccccCChhHHHHHH
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l 143 (148)
..+.+++.++|
T Consensus 86 ----------~~~~~~~~~~l 96 (97)
T cd02949 86 ----------VKMKSEYREFI 96 (97)
T ss_pred ----------CccHHHHHHhh
Confidence 88888887766
No 43
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=4.2e-16 Score=98.86 Aligned_cols=90 Identities=21% Similarity=0.418 Sum_probs=70.4
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
.++++++|.||++||++|+.+.+.+.+........-.|+.+|.+.+ .....+|++.+ +|+++++. +|+++....|
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~g- 86 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-PDIAAKYGIRS--IPTLLLFK-NGKEVDRSVG- 86 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-HHHHHHcCCCc--CCEEEEEe-CCcEeeeecC-
Confidence 3467999999999999999999999776544433335566666643 22334899999 99999995 8999988899
Q ss_pred CCccccccccCChhHHHHHHHhhh
Q psy17681 124 KSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+.+.+.+.+++++++
T Consensus 87 ---------~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 87 ---------ALPKAALKQLINKNL 101 (101)
T ss_pred ---------CCCHHHHHHHHHhhC
Confidence 888899999988764
No 44
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.66 E-value=3.4e-16 Score=99.63 Aligned_cols=90 Identities=18% Similarity=0.369 Sum_probs=67.7
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC-CCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE-PQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~-~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+++++++|.||++||++|+.+.+.+.+.+.......++..+.+|.+.. ....+|++.+ +|+++++++++. ..++.|
T Consensus 11 ~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~P~~~~~~~~~~-~~~~~g 87 (102)
T TIGR01126 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--FPTIKFFPKGKK-PVDYEG 87 (102)
T ss_pred ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--CCEEEEecCCCc-ceeecC
Confidence 479999999999999999999999987666554432344444443332 2234899999 999999996666 778889
Q ss_pred CCCccccccccCChhHHHHHHHhh
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..+.+.+.+++++.
T Consensus 88 ----------~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 88 ----------GRDLEAIVEFVNEK 101 (102)
T ss_pred ----------CCCHHHHHHHHHhc
Confidence 77788888888764
No 45
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.66 E-value=2.6e-16 Score=100.53 Aligned_cols=84 Identities=14% Similarity=0.321 Sum_probs=62.5
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAK 124 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~ 124 (148)
++ ++|.|||+||++|+.+.|.+.+++...+.. -.+..+|.+.+ .....+|++.+ +||++++ ++|+. .++.|
T Consensus 17 ~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~--~Pt~~~~-~~g~~-~~~~G-- 88 (101)
T cd02994 17 GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLSGRFFVTA--LPTIYHA-KDGVF-RRYQG-- 88 (101)
T ss_pred CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHHHHcCCcc--cCEEEEe-CCCCE-EEecC--
Confidence 54 789999999999999999998877644321 23344665542 23334899999 9999988 58885 67889
Q ss_pred CccccccccCChhHHHHHHHh
Q psy17681 125 SPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~l~~ 145 (148)
..+.++|.+++++
T Consensus 89 --------~~~~~~l~~~i~~ 101 (101)
T cd02994 89 --------PRDKEDLISFIEE 101 (101)
T ss_pred --------CCCHHHHHHHHhC
Confidence 7788888887753
No 46
>PTZ00102 disulphide isomerase; Provisional
Probab=99.65 E-value=2.2e-15 Score=119.87 Aligned_cols=95 Identities=18% Similarity=0.393 Sum_probs=70.4
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCC-CCCCCCCCCccceEEEECCCCce
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQ-DPKYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~-~~~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
++...+++++++|.|||+||++|+++.|.+.+.+...... .++....+|.++... ..+|++.+ +||+++++ +|+.
T Consensus 42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~-~g~~ 118 (477)
T PTZ00102 42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG--YPTIKFFN-KGNP 118 (477)
T ss_pred HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--ccEEEEEE-CCce
Confidence 3334456899999999999999999999998776554432 345455555433333 34899999 99999998 5665
Q ss_pred eeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 117 KSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+ ++.| ..+.+.|.+++++.+
T Consensus 119 ~-~y~g----------~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 119 V-NYSG----------GRTADGIVSWIKKLT 138 (477)
T ss_pred E-EecC----------CCCHHHHHHHHHHhh
Confidence 5 7889 778889988888764
No 47
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.65 E-value=2.3e-15 Score=99.54 Aligned_cols=88 Identities=10% Similarity=0.169 Sum_probs=64.5
Q ss_pred HHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC-C---------CC----CCCCCCccceE
Q psy17681 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ-D---------PK----YAPDGDYVPRI 107 (148)
Q Consensus 42 a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~-~---------~~----~~v~~~~~Pt~ 107 (148)
...+++.++|+|+++|||+|+.+.|.+.+.... ....+..+|++.+.... . .. .++.+ +||+
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~PT~ 94 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG--TPTF 94 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC--CCEE
Confidence 345688999999999999999999999876554 33457888888643111 1 12 45677 9999
Q ss_pred EEECCCCceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 108 LYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 108 ~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
+++. +|+++.+..|. ..+.++|.+.+
T Consensus 95 v~~k-~Gk~v~~~~G~---------~~~~~~l~~~~ 120 (122)
T TIGR01295 95 VHIT-DGKQVSVRCGS---------STTAQELQDIA 120 (122)
T ss_pred EEEe-CCeEEEEEeCC---------CCCHHHHHHHh
Confidence 9997 99999999993 33466665544
No 48
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.64 E-value=8.6e-16 Score=97.24 Aligned_cols=72 Identities=21% Similarity=0.420 Sum_probs=55.8
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC-CCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP-QDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~-~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+++++|.||++||++|+.+.+.+.+..... ..++..+.+|.++.. ...+|++.+ +||+++++ +|+++.++.|
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~--~~~i~~~~vd~~~~~~~~~~~~i~~--~Pt~~~~~-~g~~~~~~~g 86 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA--FPSVLFLSIEAEELPEISEKFEITA--VPTFVFFR-NGTIVDRVSG 86 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh--CCceEEEEEccccCHHHHHhcCCcc--ccEEEEEE-CCEEEEEEeC
Confidence 699999999999999999999997766544 334444444433222 334899999 99999997 8999999999
No 49
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.64 E-value=2.8e-17 Score=106.76 Aligned_cols=89 Identities=24% Similarity=0.579 Sum_probs=62.6
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCc--EEEecCCCCC----------C---------CCCCCCCC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKF--EMVNISDDEE----------P---------QDPKYAPD 100 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~--v~v~v~~~~~----------~---------~~~~~~v~ 100 (148)
+.+||++++.|+++|||+|+.+.+.+........ ...++ +.+++++... . ....|++.
T Consensus 2 ~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 81 (112)
T PF13098_consen 2 KGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN 81 (112)
T ss_dssp ETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence 4579999999999999999999999887655433 23334 5566654210 0 11288999
Q ss_pred CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 101 GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 101 ~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
+ +||++++|++|+++.++.| +.+.+++.+.|
T Consensus 82 g--tPt~~~~d~~G~~v~~~~G----------~~~~~~l~~~L 112 (112)
T PF13098_consen 82 G--TPTIVFLDKDGKIVYRIPG----------YLSPEELLKML 112 (112)
T ss_dssp S--SSEEEECTTTSCEEEEEES----------S--HHHHHHHH
T ss_pred c--cCEEEEEcCCCCEEEEecC----------CCCHHHHHhhC
Confidence 9 9999999999999999999 99999888764
No 50
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.63 E-value=9.5e-16 Score=97.94 Aligned_cols=87 Identities=16% Similarity=0.335 Sum_probs=62.7
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCC-ceeeeecC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQG-EPKSQVFN 122 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G-~~~~~~~G 122 (148)
.++++++|+||++||++|+.+.|.+.+.+...+...++....+|.+.......+++.+ +||++++.+++ ....++.|
T Consensus 16 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~--~Pt~~~~~~~~~~~~~~~~g 93 (104)
T cd02995 16 DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDG--FPTILFFPAGDKSNPIKYEG 93 (104)
T ss_pred CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCC--CCEEEEEcCCCcCCceEccC
Confidence 4578999999999999999999999888776554344544444443333444778888 99999997444 25666788
Q ss_pred CCCccccccccCChhHHHHH
Q psy17681 123 AKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~ 142 (148)
..+.+.+.++
T Consensus 94 ----------~~~~~~l~~f 103 (104)
T cd02995 94 ----------DRTLEDLIKF 103 (104)
T ss_pred ----------CcCHHHHHhh
Confidence 5666666554
No 51
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.63 E-value=7.2e-16 Score=98.60 Aligned_cols=88 Identities=17% Similarity=0.355 Sum_probs=66.0
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC-C-CCCCCCCCCCCccceEEEECCCCceeeee
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE-E-PQDPKYAPDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~-~-~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
+..+++++|.||++||++|+.+.|.+.+.........++..+.+|.+. . ....+|++.+ +|++++++++|+....+
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~--~P~~~~~~~~~~~~~~~ 92 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG--FPTLKFFPKGSTEPVKY 92 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC--cCEEEEEeCCCCCcccc
Confidence 345779999999999999999999998877766533456555555443 2 2334899999 99999999777777777
Q ss_pred cCCCCccccccccCChhHHHHH
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
.| ..+.+.|.++
T Consensus 93 ~g----------~~~~~~l~~~ 104 (105)
T cd02998 93 EG----------GRDLEDLVKF 104 (105)
T ss_pred CC----------ccCHHHHHhh
Confidence 88 5666666654
No 52
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.63 E-value=4.1e-16 Score=100.79 Aligned_cols=85 Identities=14% Similarity=0.215 Sum_probs=68.4
Q ss_pred ccceeHHHHHHHHHhcCCCEEEEEeCCC--ChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceE
Q psy17681 30 INWKSLDAGLQAAKTSGKPLMVLIHKSY--CAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRI 107 (148)
Q Consensus 30 i~~~~~~~~~~~a~~~~k~vli~f~a~w--C~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~ 107 (148)
++-.+|++.. ..|.+++|.||++| ||+|+.+.|.+.+.++.+.....|+.+|++.+ +....+|+|.+ +||+
T Consensus 15 ~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V~s--IPTl 87 (111)
T cd02965 15 VDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGVLR--TPAL 87 (111)
T ss_pred cccccHHHHH----hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCCCc--CCEE
Confidence 4444666554 46899999999997 99999999999887766654335667888764 34455999999 9999
Q ss_pred EEECCCCceeeeecC
Q psy17681 108 LYFGPQGEPKSQVFN 122 (148)
Q Consensus 108 ~~~~~~G~~~~~~~G 122 (148)
+++. +|+++.++.|
T Consensus 88 i~fk-dGk~v~~~~G 101 (111)
T cd02965 88 LFFR-DGRYVGVLAG 101 (111)
T ss_pred EEEE-CCEEEEEEeC
Confidence 9997 9999999999
No 53
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.63 E-value=4.3e-16 Score=101.80 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=63.9
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceee
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKS 118 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~ 118 (148)
+.....++++++|+||++||++|+.+.|.+.++...+. ...|+.+|++.. .....+|++.+ +||++++. +|+++.
T Consensus 15 ~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~-~~l~~~~~v~~--vPt~l~fk-~G~~v~ 89 (113)
T cd02989 15 FFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKA-PFLVEKLNIKV--LPTVILFK-NGKTVD 89 (113)
T ss_pred HHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccC-HHHHHHCCCcc--CCEEEEEE-CCEEEE
Confidence 33444567899999999999999999999988776543 246777877763 33445899999 99999998 999999
Q ss_pred eecCC
Q psy17681 119 QVFNA 123 (148)
Q Consensus 119 ~~~G~ 123 (148)
++.|.
T Consensus 90 ~~~g~ 94 (113)
T cd02989 90 RIVGF 94 (113)
T ss_pred EEECc
Confidence 99994
No 54
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.62 E-value=5.5e-16 Score=101.27 Aligned_cols=99 Identities=14% Similarity=0.261 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCc
Q psy17681 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGE 115 (148)
Q Consensus 36 ~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~ 115 (148)
.+.+.....+++.++|+||++||++|+.+.|.+.+..... ....+..+|++.+ +....+|++.+ +||+++++.+|+
T Consensus 12 ~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~-~~l~~~~~v~~--vPt~~i~~~g~~ 87 (113)
T cd02975 12 KEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDED-KEKAEKYGVER--VPTTIFLQDGGK 87 (113)
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcC-HHHHHHcCCCc--CCEEEEEeCCee
Confidence 3434444566788999999999999999999998876543 2235677887753 34445999999 999999974322
Q ss_pred ee-eeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 116 PK-SQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 116 ~~-~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
.- .++.| ..+..++.+.++..++
T Consensus 88 ~~~~~~~G----------~~~~~el~~~i~~i~~ 111 (113)
T cd02975 88 DGGIRYYG----------LPAGYEFASLIEDIVR 111 (113)
T ss_pred cceEEEEe----------cCchHHHHHHHHHHHh
Confidence 11 15678 7778888888887653
No 55
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=1.4e-15 Score=99.28 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
+++++|.||++||++|+.+.|.+.+++..+. ...|+.+|++.. ....+|++.+ +||++++. +|+++.+..|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~--~l~~~~~i~~--~Pt~~~f~-~G~~v~~~~G~ 95 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA--FLVNYLDIKV--LPTLLVYK-NGELIDNIVGF 95 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh--HHHHhcCCCc--CCEEEEEE-CCEEEEEEecH
Confidence 4899999999999999999999988776553 236777887764 4455899999 99999997 89999999993
No 56
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.61 E-value=4.1e-15 Score=118.19 Aligned_cols=98 Identities=19% Similarity=0.428 Sum_probs=80.0
Q ss_pred HHHHHHhcCC--CEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCCC---CCCCCCCccceEEEE
Q psy17681 38 GLQAAKTSGK--PLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQDP---KYAPDGDYVPRILYF 110 (148)
Q Consensus 38 ~~~~a~~~~k--~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~ 110 (148)
.++.++.++| ||+++|||+||-.|+.+++...++........++ ..+|++.+++...+ +|++-+ .|+.+++
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G--~P~~~ff 541 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFG--VPTYLFF 541 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCC--CCEEEEE
Confidence 4555555555 9999999999999999999888766655444455 44888887665544 999999 9999999
Q ss_pred CCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 111 GPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 111 ~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+++|++.....| +.+.+.++++++++.
T Consensus 542 ~~~g~e~~~l~g----------f~~a~~~~~~l~~~~ 568 (569)
T COG4232 542 GPQGSEPEILTG----------FLTADAFLEHLERAA 568 (569)
T ss_pred CCCCCcCcCCcc----------eecHHHHHHHHHHhc
Confidence 999999888999 999999999999875
No 57
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.61 E-value=3.5e-15 Score=104.28 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=67.5
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC----------------------CCCCCCCCCCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE----------------------EPQDPKYAPDG 101 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~----------------------~~~~~~~~v~~ 101 (148)
.+||+++|+||++||++|+++.|.+.+... ..-.++.+++++.. ......|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~---~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAK---DGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHH---cCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 468999999999999999999988755432 12234555543211 01112678888
Q ss_pred CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 102 DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 102 ~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+|+++++|++|+++.++.| ..+.+++.+.+++++
T Consensus 138 --~P~~~~id~~G~i~~~~~G----------~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 138 --APETFLVDGNGVILYRHAG----------PLNNEVWTEGFLPAM 171 (173)
T ss_pred --CCeEEEEcCCceEEEEEec----------cCCHHHHHHHHHHHh
Confidence 9999999999999999999 888999999988876
No 58
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.60 E-value=2.3e-15 Score=96.09 Aligned_cols=87 Identities=20% Similarity=0.325 Sum_probs=64.1
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
+.+++++|.||++||++|+++.|.+.+........-.+..+|.+.+ .....+|++++ +|++++++++......+.|
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~i~~--~P~~~~~~~~~~~~~~~~g- 91 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-QSLAQQYGVRG--FPTIKVFGAGKNSPQDYQG- 91 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-HHHHHHCCCCc--cCEEEEECCCCcceeecCC-
Confidence 3467799999999999999999999877655543334455666542 22334899999 9999999854366667778
Q ss_pred CCccccccccCChhHHHHHH
Q psy17681 124 KSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l 143 (148)
..+.+.|.+++
T Consensus 92 ---------~~~~~~l~~~~ 102 (103)
T cd03001 92 ---------GRTAKAIVSAA 102 (103)
T ss_pred ---------CCCHHHHHHHh
Confidence 67777777665
No 59
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.60 E-value=3.1e-15 Score=104.96 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=61.8
Q ss_pred HHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc---EEEecCCCC-----------------CC---------
Q psy17681 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF---EMVNISDDE-----------------EP--------- 92 (148)
Q Consensus 42 a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---v~v~v~~~~-----------------~~--------- 92 (148)
+.-.||+.+|+|||+||++|+...|.+..+....-..++| +.||++++. .+
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 3445999999999999999999999998763221111112 556766510 00
Q ss_pred --CCCCCCCCCCccceE-EEECCCCceeeeecCCCCccccccccCChhHHHH
Q psy17681 93 --QDPKYAPDGDYVPRI-LYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQ 141 (148)
Q Consensus 93 --~~~~~~v~~~~~Pt~-~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~ 141 (148)
....|++.+ +|++ +++|++|+++.++.| ..+.+++.+
T Consensus 135 g~v~~~~gv~~--~P~T~fVIDk~GkVv~~~~G----------~l~~ee~e~ 174 (184)
T TIGR01626 135 GAVKNAWQLNS--EDSAIIVLDKTGKVKFVKEG----------ALSDSDIQT 174 (184)
T ss_pred chHHHhcCCCC--CCceEEEECCCCcEEEEEeC----------CCCHHHHHH
Confidence 011788888 9888 899999999999999 666665533
No 60
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.60 E-value=1.3e-15 Score=103.37 Aligned_cols=75 Identities=13% Similarity=0.361 Sum_probs=55.7
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhh------cCCc--EEEecCCCCC---------C-------CC----
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL------APKF--EMVNISDDEE---------P-------QD---- 94 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~------~~~~--v~v~v~~~~~---------~-------~~---- 94 (148)
.-+||+++|+|||+|||+|+++.|.+.+....... ..++ +.|+.+.+.. + ..
T Consensus 22 ~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~ 101 (146)
T cd03008 22 RLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFR 101 (146)
T ss_pred HhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHH
Confidence 44699999999999999999999999876654332 1234 5566665211 0 00
Q ss_pred ----CCCCCCCCccceEEEECCCCceeee
Q psy17681 95 ----PKYAPDGDYVPRILYFGPQGEPKSQ 119 (148)
Q Consensus 95 ----~~~~v~~~~~Pt~~~~~~~G~~~~~ 119 (148)
.+|++.+ +|+++++|++|+++.+
T Consensus 102 ~~l~~~y~v~~--iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 102 RELEAQFSVEE--LPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHHHcCCCC--CCEEEEECCCCcEEee
Confidence 1778888 9999999999999975
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.59 E-value=3.9e-15 Score=93.93 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=66.0
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC-CCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE-EPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~-~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
+.....++++++|.||++||++|+.+.+.+.+..........+..+.++.++ .....+|++.+ +||+++++++|...
T Consensus 8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~Pt~~~~~~~~~~~ 85 (101)
T cd02961 8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--YPTIKLFPNGSKEP 85 (101)
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--CCEEEEEcCCCccc
Confidence 3444556779999999999999999999998766554312334344444332 33445899999 99999999777888
Q ss_pred eeecCCCCccccccccCChhHHHHH
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
.++.| ..+.+.+.++
T Consensus 86 ~~~~g----------~~~~~~i~~~ 100 (101)
T cd02961 86 VKYEG----------PRTLESLVEF 100 (101)
T ss_pred ccCCC----------CcCHHHHHhh
Confidence 88888 5666666554
No 62
>KOG0908|consensus
Probab=99.59 E-value=1.7e-15 Score=108.85 Aligned_cols=95 Identities=18% Similarity=0.362 Sum_probs=76.6
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
+++..+.. ..+|.++|+|+|+||+||++..|.|++++..|.. .-|..||||.. ....+.++|.+ .||++++. |
T Consensus 11 df~~~ls~--ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c-~~taa~~gV~a--mPTFiff~-n 83 (288)
T KOG0908|consen 11 DFQRELSA--AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDEC-RGTAATNGVNA--MPTFIFFR-N 83 (288)
T ss_pred HHHHhhhc--cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHh-hchhhhcCccc--CceEEEEe-c
Confidence 45555543 4589999999999999999999999999888843 34666888874 45666899999 99999997 9
Q ss_pred CceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 114 GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
|..+.++.| .+...|.+.+++-
T Consensus 84 g~kid~~qG-----------Ad~~gLe~kv~~~ 105 (288)
T KOG0908|consen 84 GVKIDQIQG-----------ADASGLEEKVAKY 105 (288)
T ss_pred CeEeeeecC-----------CCHHHHHHHHHHH
Confidence 999999999 5577777777653
No 63
>PTZ00051 thioredoxin; Provisional
Probab=99.59 E-value=2.9e-15 Score=95.02 Aligned_cols=80 Identities=13% Similarity=0.287 Sum_probs=60.3
Q ss_pred HHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 38 GLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 38 ~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
.+.....++++++|.||++||++|+.+.+.+........ ...|+.+|.+.. .....+|++.+ +||++++. +|+++
T Consensus 10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~-~~~~~~~~v~~--~Pt~~~~~-~g~~~ 84 (98)
T PTZ00051 10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDEL-SEVAEKENITS--MPTFKVFK-NGSVV 84 (98)
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcch-HHHHHHCCCce--eeEEEEEe-CCeEE
Confidence 344445678999999999999999999999876655322 224555665532 23344899999 99998885 99999
Q ss_pred eeecC
Q psy17681 118 SQVFN 122 (148)
Q Consensus 118 ~~~~G 122 (148)
.+..|
T Consensus 85 ~~~~G 89 (98)
T PTZ00051 85 DTLLG 89 (98)
T ss_pred EEEeC
Confidence 99999
No 64
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.58 E-value=1.2e-14 Score=101.16 Aligned_cols=95 Identities=12% Similarity=0.192 Sum_probs=73.4
Q ss_pred HHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC---------------------CCCCCC
Q psy17681 40 QAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE---------------------PQDPKY 97 (148)
Q Consensus 40 ~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~---------------------~~~~~~ 97 (148)
..+..+||+++|+||++||++|+...+.+.+........ ..++.++.+.... .....|
T Consensus 55 ~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 134 (173)
T PRK03147 55 ELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAY 134 (173)
T ss_pred eHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHc
Confidence 333446899999999999999999999998777655433 2556677664311 111288
Q ss_pred CCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 98 APDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 98 ~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
++.+ +|+++++|++|+++....| ..+.+++.+.++++
T Consensus 135 ~v~~--~P~~~lid~~g~i~~~~~g----------~~~~~~l~~~l~~~ 171 (173)
T PRK03147 135 GVGP--LPTTFLIDKDGKVVKVITG----------EMTEEQLEEYLEKI 171 (173)
T ss_pred CCCC--cCeEEEECCCCcEEEEEeC----------CCCHHHHHHHHHHh
Confidence 9988 9999999999999999999 78888888888765
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=4.4e-15 Score=103.96 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=60.2
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
+++|+|+||++||++|+.|.|.+..++..+. ...|+.||++.. ....+|++.+ +||++++. +|+++.+++|.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~~f~v~~--vPTlllyk-~G~~v~~~vG~ 154 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASDEFDTDA--LPALLVYK-GGELIGNFVRV 154 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHHhCCCCC--CCEEEEEE-CCEEEEEEech
Confidence 3599999999999999999999988876653 346777888753 4455899999 99999997 89999999994
No 66
>PTZ00102 disulphide isomerase; Provisional
Probab=99.57 E-value=1.2e-14 Score=115.56 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=73.7
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC-CCCCCCCCCCccceEEEECC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP-QDPKYAPDGDYVPRILYFGP 112 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~-~~~~~~v~~~~~Pt~~~~~~ 112 (148)
++++.+ .+++|+++|.|||+||++|+.+.|.+.+.+...+....++...+|.+... ....|++.+ +||++++++
T Consensus 366 ~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~--~Pt~~~~~~ 440 (477)
T PTZ00102 366 TFEEIV---FKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA--FPTILFVKA 440 (477)
T ss_pred chHHHH---hcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc--cCeEEEEEC
Confidence 455433 45699999999999999999999999988766654444444434433222 234789999 999999997
Q ss_pred CCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 113 QGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 113 ~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
+|+...++.| ..+.+.+.+++++.
T Consensus 441 ~~~~~~~~~G----------~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 441 GERTPIPYEG----------ERTVEGFKEFVNKH 464 (477)
T ss_pred CCcceeEecC----------cCCHHHHHHHHHHc
Confidence 7766567889 88899999988875
No 67
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=1.7e-14 Score=89.37 Aligned_cols=87 Identities=20% Similarity=0.403 Sum_probs=65.5
Q ss_pred HHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeec
Q psy17681 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 42 a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
+.+++++++|.||++||++|+.+.+.+.+.... ...-.++.+|.+.+ ......|++.+ +|++++++ +|+.+..+.
T Consensus 6 ~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~-~~~~~~~~v~~--~P~~~~~~-~g~~~~~~~ 80 (93)
T cd02947 6 LIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDEN-PELAEEYGVRS--IPTFLFFK-NGKEVDRVV 80 (93)
T ss_pred HHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCC-hhHHHhcCccc--ccEEEEEE-CCEEEEEEe
Confidence 344569999999999999999999998776544 22234555666652 33445899999 99999997 788899899
Q ss_pred CCCCccccccccCChhHHHHHH
Q psy17681 122 NAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 122 G~~~~~~~~~~~~~~~~l~~~l 143 (148)
| ..+.+.|.+.+
T Consensus 81 g----------~~~~~~l~~~i 92 (93)
T cd02947 81 G----------ADPKEELEEFL 92 (93)
T ss_pred c----------CCCHHHHHHHh
Confidence 9 66667776654
No 68
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.55 E-value=6.5e-15 Score=96.68 Aligned_cols=78 Identities=22% Similarity=0.390 Sum_probs=57.9
Q ss_pred eHHHHHHHHHhcCCCEEEEEeC-------CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC------CCCCCCCCCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHK-------SYCAACHELSPKFAASPEIAELAPKFEMVNISDDE------EPQDPKYAPD 100 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~------~~~~~~~~v~ 100 (148)
++.+.+.. .+|++++|+||| +||++|+.+.|.+.+....+..+..|+.+|+++.. ......+++.
T Consensus 11 ~f~~~i~~--~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~ 88 (119)
T cd02952 11 EFLKLLKS--HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT 88 (119)
T ss_pred HHHHHHHh--cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc
Confidence 44444442 347999999999 99999999999998876665544567888887632 2333488998
Q ss_pred -CCccceEEEECCCCc
Q psy17681 101 -GDYVPRILYFGPQGE 115 (148)
Q Consensus 101 -~~~~Pt~~~~~~~G~ 115 (148)
+ +||+++++..++
T Consensus 89 ~~--iPT~~~~~~~~~ 102 (119)
T cd02952 89 TG--VPTLLRWKTPQR 102 (119)
T ss_pred cC--CCEEEEEcCCce
Confidence 8 999999974433
No 69
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=3.9e-14 Score=114.29 Aligned_cols=116 Identities=24% Similarity=0.421 Sum_probs=93.1
Q ss_pred CCcccce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEEEecCCCCCCCCC-CCC-----
Q psy17681 27 GGHINWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNISDDEEPQDP-KYA----- 98 (148)
Q Consensus 27 ~~~i~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~~~~~~-~~~----- 98 (148)
...++|. +-.++++.|+.++|||+|.+..+||++|+.|..+-.+++++.+ .|.+||.|.||+++.+..+ .|.
T Consensus 23 ~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~ 102 (667)
T COG1331 23 HNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQA 102 (667)
T ss_pred CCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHH
Confidence 3568999 7789999999999999999999999999999777666666654 7889999999998877655 222
Q ss_pred ---CCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 99 ---PDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 99 ---v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
-.| +|.++|++|||++.+ .|++-++.-++...+..++++.+...
T Consensus 103 ~tG~GG--WPLtVfLTPd~kPFf--agTY~P~e~r~g~pGf~~lL~~i~~~ 149 (667)
T COG1331 103 ITGQGG--WPLTVFLTPDGKPFF--AGTYFPKEDRYGRPGFKQLLEAIRET 149 (667)
T ss_pred hccCCC--CceeEEECCCCceee--eeeecCCcccCCCcCHHHHHHHHHHH
Confidence 335 999999999999987 56666666666677777777776653
No 70
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.54 E-value=3.6e-14 Score=92.84 Aligned_cols=69 Identities=17% Similarity=0.347 Sum_probs=49.3
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCC-cEEEecCC--CCC-CCCCCCCCCCCccceEEEECCCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK-FEMVNISD--DEE-PQDPKYAPDGDYVPRILYFGPQG 114 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~v~v~v~~--~~~-~~~~~~~v~~~~~Pt~~~~~~~G 114 (148)
..+++++|.|||+||++|+.+.|.+.+.+...+.... +....++. +.. ....+|++++ +||++++.+++
T Consensus 17 ~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~--~Pt~~lf~~~~ 89 (114)
T cd02992 17 GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG--YPTLRYFPPFS 89 (114)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC--CCEEEEECCCC
Confidence 3468999999999999999999999887765543332 33344443 222 2234899999 99999997444
No 71
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.54 E-value=1.4e-14 Score=96.11 Aligned_cols=79 Identities=22% Similarity=0.356 Sum_probs=57.7
Q ss_pred HHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC----------------------CCCCCCCC
Q psy17681 40 QAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD----------------------EEPQDPKY 97 (148)
Q Consensus 40 ~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~----------------------~~~~~~~~ 97 (148)
..+..+||+++|+||++||++|+.+.|.+.+..+.. .-.++.++.+.. +......|
T Consensus 19 ~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 96 (127)
T cd03010 19 TSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDL 96 (127)
T ss_pred cHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhc
Confidence 334446999999999999999999999987654332 234455554321 01111268
Q ss_pred CCCCCccceEEEECCCCceeeeecC
Q psy17681 98 APDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 98 ~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
++.+ +|+++++|++|+++.+..|
T Consensus 97 ~v~~--~P~~~~ld~~G~v~~~~~G 119 (127)
T cd03010 97 GVYG--VPETFLIDGDGIIRYKHVG 119 (127)
T ss_pred CCCC--CCeEEEECCCceEEEEEec
Confidence 8888 9999999999999999999
No 72
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.53 E-value=2.1e-14 Score=113.20 Aligned_cols=99 Identities=14% Similarity=0.260 Sum_probs=70.9
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCC-CCCCCCCCccceEEEEC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQD-PKYAPDGDYVPRILYFG 111 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~ 111 (148)
++++.++. .+.++++||+|||+||++|+.|.|.+.+++..+... ..|+.+|+|.+..... .+|+|.+ +||+++|.
T Consensus 360 nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~--~PTii~Fk 436 (463)
T TIGR00424 360 GIENLLKL-EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS--FPTILFFP 436 (463)
T ss_pred HHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCc--cceEEEEE
Confidence 55555432 457999999999999999999999998887665433 2456688776533232 4799999 99999997
Q ss_pred CCCceeeeec-CCCCccccccccCChhHHHHHHHh
Q psy17681 112 PQGEPKSQVF-NAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 112 ~~G~~~~~~~-G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
.++.....+. | .++.+.|..+++.
T Consensus 437 ~g~~~~~~Y~~g----------~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 437 KHSSRPIKYPSE----------KRDVDSLMSFVNL 461 (463)
T ss_pred CCCCCceeCCCC----------CCCHHHHHHHHHh
Confidence 4432222233 4 6788899888864
No 73
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.1e-13 Score=91.77 Aligned_cols=117 Identities=16% Similarity=0.317 Sum_probs=85.5
Q ss_pred HHHHHHhhhcccCCCCCCcccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEE--EecC
Q psy17681 11 CVLCVVSCQGDLSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEM--VNIS 87 (148)
Q Consensus 11 ~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~--v~v~ 87 (148)
+.+++.+|.... +..+.-++-+..+.+..++|..++.|..+.|++|.++...+...++..+ ...+|.. +++.
T Consensus 12 is~fl~a~~s~~-----ek~s~~~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~ 86 (182)
T COG2143 12 ISLFLSACKSNN-----EKRSNIDVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNIS 86 (182)
T ss_pred HHHHHHHHhCCc-----hhhhhhhhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEec
Confidence 345556665431 2233334556677778899999999999999999999988888777654 4456744 5554
Q ss_pred CCCCC---------------CCCCCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 88 DDEEP---------------QDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 88 ~~~~~---------------~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
..++. ....|++++ +||++|+|++|+.+..++| |.++++++.-++
T Consensus 87 ~skpv~f~~g~kee~~s~~ELa~kf~vrs--tPtfvFfdk~Gk~Il~lPG----------Y~ppe~Fl~vlk 146 (182)
T COG2143 87 YSKPVLFKVGDKEEKMSTEELAQKFAVRS--TPTFVFFDKTGKTILELPG----------YMPPEQFLAVLK 146 (182)
T ss_pred cCcceEeecCceeeeecHHHHHHHhcccc--CceEEEEcCCCCEEEecCC----------CCCHHHHHHHHH
Confidence 43221 112899999 9999999999999999999 999998865543
No 74
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.52 E-value=3.7e-14 Score=105.58 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=69.4
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC----------CCCCCCCCCCCccceEEEE
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE----------PQDPKYAPDGDYVPRILYF 110 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~----------~~~~~~~v~~~~~Pt~~~~ 110 (148)
.....|+++||+||++||++|+.+.|.+......+. ..++.|++|.... ....+|++.+ +|+++++
T Consensus 161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--vPtl~Lv 236 (271)
T TIGR02740 161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--VPAVFLA 236 (271)
T ss_pred HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--CCeEEEE
Confidence 334569999999999999999999999987765543 3456677776321 1223899999 9999999
Q ss_pred CCCCc-eeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 111 GPQGE-PKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 111 ~~~G~-~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
+++|+ +.....| ..+.++|.+.+..+
T Consensus 237 ~~~~~~v~~v~~G----------~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQFTPIGFG----------VMSADELVDRILLA 263 (271)
T ss_pred ECCCCEEEEEEeC----------CCCHHHHHHHHHHH
Confidence 98554 4445668 88899988887665
No 75
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.51 E-value=1.7e-14 Score=96.27 Aligned_cols=75 Identities=20% Similarity=0.444 Sum_probs=56.4
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CC--cEEEecCCCCC-----------------------CCCCCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PK--FEMVNISDDEE-----------------------PQDPKY 97 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~--~v~v~v~~~~~-----------------------~~~~~~ 97 (148)
-+||+++|+||++||++|+.+.|.+.+........ .+ ++.+++|.+.. .....|
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 35899999999999999999999988766554432 23 45577765421 001278
Q ss_pred CCCCCccceEEEECCCCceeeee
Q psy17681 98 APDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 98 ~v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
++.+ +|+++++|++|+++.+.
T Consensus 96 ~v~~--~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 96 KIEG--IPTLIILDADGEVVTTD 116 (131)
T ss_pred CCCC--CCEEEEECCCCCEEccc
Confidence 9999 99999999999988753
No 76
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.51 E-value=4.5e-15 Score=93.66 Aligned_cols=69 Identities=30% Similarity=0.678 Sum_probs=51.2
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC--CcEEEecCCCCC-----------CC-----C--------CCCCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAP--KFEMVNISDDEE-----------PQ-----D--------PKYAP 99 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~v~v~v~~~~~-----------~~-----~--------~~~~v 99 (148)
||+++|+|||+||++|++..|.+.+....+.... .+|.|+.|.+.. +. . ..|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 7999999999999999999999998877776323 456777776310 00 0 07788
Q ss_pred CCCccceEEEECCCCce
Q psy17681 100 DGDYVPRILYFGPQGEP 116 (148)
Q Consensus 100 ~~~~~Pt~~~~~~~G~~ 116 (148)
.+ +|+++++|++|++
T Consensus 81 ~~--iP~~~lld~~G~I 95 (95)
T PF13905_consen 81 NG--IPTLVLLDPDGKI 95 (95)
T ss_dssp TS--SSEEEEEETTSBE
T ss_pred Cc--CCEEEEECCCCCC
Confidence 88 9999999999985
No 77
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.50 E-value=1.3e-14 Score=97.04 Aligned_cols=79 Identities=19% Similarity=0.426 Sum_probs=57.9
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-C--CcEEEecCCCCC------------------C-----C-
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-P--KFEMVNISDDEE------------------P-----Q- 93 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~--~~v~v~v~~~~~------------------~-----~- 93 (148)
.+.-+||+++|+||++||++|+.+.|.+.+........ . .++.++++.+.. . .
T Consensus 12 l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 91 (132)
T cd02964 12 VSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELL 91 (132)
T ss_pred HHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHH
Confidence 33446999999999999999999999998776655432 2 345577665320 0 0
Q ss_pred CCCCCCCCCccceEEEECCCCceeeeec
Q psy17681 94 DPKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 94 ~~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
...|++.+ +|+++++|++|+++.+..
T Consensus 92 ~~~~~v~~--iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 92 EKQFKVEG--IPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred HHHcCCCC--CCEEEEECCCCCEEchhH
Confidence 11589999 999999999999887543
No 78
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.50 E-value=6.2e-14 Score=92.32 Aligned_cols=85 Identities=16% Similarity=0.234 Sum_probs=63.0
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC----------------------CCCCCCCCC
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD----------------------EEPQDPKYA 98 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~----------------------~~~~~~~~~ 98 (148)
.+..++|+++|+||++||++|+.+.|.+...... ..++.+.++.+ +......|+
T Consensus 15 ~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 90 (123)
T cd03011 15 LESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWG 90 (123)
T ss_pred HHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCC
Confidence 3344689999999999999999999988755432 23444444432 111122789
Q ss_pred CCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHH
Q psy17681 99 PDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 99 v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
+.+ +|++++++++| ++....| ..+.++|.+.
T Consensus 91 i~~--~P~~~vid~~g-i~~~~~g----------~~~~~~~~~~ 121 (123)
T cd03011 91 VSV--TPAIVIVDPGG-IVFVTTG----------VTSEWGLRLR 121 (123)
T ss_pred CCc--ccEEEEEcCCC-eEEEEec----------cCCHHHHHhh
Confidence 999 99999999888 9999999 8888888764
No 79
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.48 E-value=2.1e-13 Score=95.37 Aligned_cols=84 Identities=13% Similarity=0.238 Sum_probs=63.7
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC----------C--CCCCCCC--CCCccceEEEECCCCc
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE----------P--QDPKYAP--DGDYVPRILYFGPQGE 115 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~----------~--~~~~~~v--~~~~~Pt~~~~~~~G~ 115 (148)
+|+||++|||+|+++.|.+.+..+.+. -.++.+++|.... + ....|++ .+ +|+++++|++|+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~--iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVA--TPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCC--CCeEEEEeCCCc
Confidence 788999999999999999987765542 2445577764310 0 0116674 47 999999999999
Q ss_pred ee-eeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 116 PK-SQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 116 ~~-~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+. ..+.| ..+.+++.+.+++.+
T Consensus 149 i~~~~~~G----------~~~~~~L~~~I~~ll 171 (181)
T PRK13728 149 EALPLLQG----------ATDAAGFMARMDTVL 171 (181)
T ss_pred EEEEEEEC----------CCCHHHHHHHHHHHH
Confidence 96 57999 888999988887765
No 80
>PTZ00062 glutaredoxin; Provisional
Probab=99.48 E-value=2e-13 Score=97.45 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
..++++|||+||++|+.|.+.+.+++..+. ...|+.||.+ |+|.+ +||++++. +|+++.++.|
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d---------~~V~~--vPtfv~~~-~g~~i~r~~G 80 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA---------DANNE--YGVFEFYQ-NSQLINSLEG 80 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc---------cCccc--ceEEEEEE-CCEEEeeeeC
Confidence 678999999999999999999988776552 2344555433 99999 99999997 9999999999
No 81
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=6.9e-14 Score=85.77 Aligned_cols=81 Identities=19% Similarity=0.293 Sum_probs=61.3
Q ss_pred EEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCCCccc
Q psy17681 49 LMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQV 128 (148)
Q Consensus 49 vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~ 128 (148)
.+..||++||++|+.+.+.+.+........-.++.+|++.+ .....+|++.+ +||+++ +|+. ++.|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-~~~~~~~~v~~--vPt~~~---~g~~--~~~G------ 67 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-PQKAMEYGIMA--VPAIVI---NGDV--EFIG------ 67 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-HHHHHHcCCcc--CCEEEE---CCEE--EEec------
Confidence 46789999999999999999887655543334566776643 33344899999 999875 5653 6778
Q ss_pred cccccCChhHHHHHHHhhh
Q psy17681 129 YRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 129 ~~~~~~~~~~l~~~l~~al 147 (148)
..+.+++.+.++++|
T Consensus 68 ----~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 68 ----APTKEELVEAIKKRL 82 (82)
T ss_pred ----CCCHHHHHHHHHhhC
Confidence 788999999988875
No 82
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.47 E-value=8e-14 Score=119.84 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=69.7
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEec-----CCCCC-----------------------CCCCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI-----SDDEE-----------------------PQDPK 96 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v-----~~~~~-----------------------~~~~~ 96 (148)
+||+++|+|||+||++|+.+.|.+.++.+.++. +.+..+.+ |.++. ....+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~-~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD-QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC-CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 599999999999999999999999888776653 34533333 22110 00127
Q ss_pred CCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 97 YAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 97 ~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
|++.+ +|+++++|++|+++.+..| ....+++.+.++.++
T Consensus 498 ~~V~~--iPt~ilid~~G~iv~~~~G----------~~~~~~l~~~l~~~l 536 (1057)
T PLN02919 498 LGVSS--WPTFAVVSPNGKLIAQLSG----------EGHRKDLDDLVEAAL 536 (1057)
T ss_pred cCCCc--cceEEEECCCCeEEEEEec----------ccCHHHHHHHHHHHH
Confidence 88999 9999999999999999999 777888888888775
No 83
>PLN02309 5'-adenylylsulfate reductase
Probab=99.47 E-value=1.3e-13 Score=108.80 Aligned_cols=92 Identities=16% Similarity=0.288 Sum_probs=65.6
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCC-CCCCCCCCccceEEEECCCCceeeee
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQD-PKYAPDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
.+.+++++|+|||+||++|+.|.|.+.+++..+... ..|..+|++.++.... ..|+|.+ +||+++|.++......+
T Consensus 362 ~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~--~PTil~f~~g~~~~v~Y 439 (457)
T PLN02309 362 ENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGS--FPTILLFPKNSSRPIKY 439 (457)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCce--eeEEEEEeCCCCCeeec
Confidence 457999999999999999999999999877665433 2345566663333332 2699999 99999997443322333
Q ss_pred cCCCCccccccccCChhHHHHHHHh
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
.|. .++.+.|.+++++
T Consensus 440 ~~~---------~R~~~~L~~fv~~ 455 (457)
T PLN02309 440 PSE---------KRDVDSLLSFVNS 455 (457)
T ss_pred CCC---------CcCHHHHHHHHHH
Confidence 321 5788899888875
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=2.4e-13 Score=107.46 Aligned_cols=93 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCC-CCCCCCCCCccceEEEECCCCce-e
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQ-DPKYAPDGDYVPRILYFGPQGEP-K 117 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~-~~~~~v~~~~~Pt~~~~~~~G~~-~ 117 (148)
...+++++++|.|||+||++|+++.|.+.+.+...... .++..+.+|+++... ..+|++.+ +||++++. +|+. +
T Consensus 13 ~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~-~g~~~~ 89 (462)
T TIGR01130 13 DFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG--YPTLKIFR-NGEDSV 89 (462)
T ss_pred HHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc--ccEEEEEe-CCccce
Confidence 33456899999999999999999999998776655432 234444445433332 34899999 99999997 6776 7
Q ss_pred eeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.++.| ..+.+.+.+++++.
T Consensus 90 ~~~~g----------~~~~~~l~~~i~~~ 108 (462)
T TIGR01130 90 SDYNG----------PRDADGIVKYMKKQ 108 (462)
T ss_pred eEecC----------CCCHHHHHHHHHHh
Confidence 77889 67777787777664
No 85
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.47 E-value=5e-14 Score=93.47 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=59.0
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC----CCCC---------------------
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD----DEEP--------------------- 92 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~----~~~~--------------------- 92 (148)
+..+..+||+++|+||++||++|+...|.+.++.+.+.... .++.++.+. ++..
T Consensus 16 v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~ 95 (126)
T cd03012 16 LSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDY 95 (126)
T ss_pred cCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCch
Confidence 33444469999999999999999999999988776665322 334454321 0000
Q ss_pred -CCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 93 -QDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 93 -~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
....|++.+ +|+++++|++|+++..+.|
T Consensus 96 ~~~~~~~v~~--~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 96 ATWRAYGNQY--WPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HHHHHhCCCc--CCeEEEECCCCcEEEEEec
Confidence 001578888 9999999999999999988
No 86
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.45 E-value=5.2e-14 Score=91.52 Aligned_cols=72 Identities=14% Similarity=0.340 Sum_probs=50.7
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC---------C-----C------CCCCCCCCCCcc
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE---------E-----P------QDPKYAPDGDYV 104 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~---------~-----~------~~~~~~v~~~~~ 104 (148)
+||+++|+||++||++|+.+.|.+.+....+.....++.+. +.+. . + ....|++.+ +
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK--L 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC--c
Confidence 48999999999999999999999987655443222334332 2110 0 0 001678888 9
Q ss_pred ceEEEECCCCceeee
Q psy17681 105 PRILYFGPQGEPKSQ 119 (148)
Q Consensus 105 Pt~~~~~~~G~~~~~ 119 (148)
|+++++|++|+++++
T Consensus 97 P~~~vid~~G~v~~~ 111 (114)
T cd02967 97 PYAVLLDEAGVIAAK 111 (114)
T ss_pred CeEEEECCCCeEEec
Confidence 999999999998874
No 87
>KOG0190|consensus
Probab=99.45 E-value=1.3e-13 Score=108.66 Aligned_cols=95 Identities=17% Similarity=0.362 Sum_probs=73.6
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC-CCCCCCCCCCCccceEEEEC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE-PQDPKYAPDGDYVPRILYFG 111 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~-~~~~~~~v~~~~~Pt~~~~~ 111 (148)
++++.+. .+..++|.||||||+||+++.|.+.+.+..-... ...-...||...+ ....+|+|+| +||+.++.
T Consensus 34 nf~~~i~----~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~g--yPTlkiFr 107 (493)
T KOG0190|consen 34 NFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRG--YPTLKIFR 107 (493)
T ss_pred cHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCC--CCeEEEEe
Confidence 6666655 4788899999999999999999999877755433 2443444454333 3334999999 99999997
Q ss_pred CCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 112 PQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 112 ~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
||+....+.| .++.+.|..+|++
T Consensus 108 -nG~~~~~Y~G----------~r~adgIv~wl~k 130 (493)
T KOG0190|consen 108 -NGRSAQDYNG----------PREADGIVKWLKK 130 (493)
T ss_pred -cCCcceeccC----------cccHHHHHHHHHh
Confidence 8887777899 8999999999975
No 88
>KOG0190|consensus
Probab=99.45 E-value=1.9e-13 Score=107.80 Aligned_cols=95 Identities=18% Similarity=0.335 Sum_probs=70.3
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
++++ .+..++|.|||.||||||+||+++.|.++++++.++...+.+...+|... ......++.+ +||++++..+
T Consensus 375 nfd~---iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTa-Nd~~~~~~~~--fPTI~~~pag 448 (493)
T KOG0190|consen 375 NFDD---IVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATA-NDVPSLKVDG--FPTILFFPAG 448 (493)
T ss_pred CHHH---HhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccc-ccCccccccc--cceEEEecCC
Confidence 5554 34677999999999999999999999999999999887788776666532 2334667888 9999999866
Q ss_pred Cce-eeeecCCCCccccccccCChhHHHHHHH
Q psy17681 114 GEP-KSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 114 G~~-~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
++. ...+.| .+..+++...++
T Consensus 449 ~k~~pv~y~g----------~R~le~~~~fi~ 470 (493)
T KOG0190|consen 449 HKSNPVIYNG----------DRTLEDLKKFIK 470 (493)
T ss_pred CCCCCcccCC----------CcchHHHHhhhc
Confidence 532 334567 555555555443
No 89
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.45 E-value=1.9e-13 Score=96.99 Aligned_cols=71 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAK 124 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~ 124 (148)
+++|+|+||++||++|+.|.|.+..++..+. ...|+.++++.. ...|++.+ +||++++. +|+.+.+++|..
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~----~~~~~i~~--lPTlliyk-~G~~v~~ivG~~ 172 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC----IPNYPDKN--LPTILVYR-NGDIVKQFIGLL 172 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh----HhhCCCCC--CCEEEEEE-CCEEEEEEeCch
Confidence 4599999999999999999999999887764 357888888742 35899999 99999997 999999999943
No 90
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.41 E-value=2.8e-13 Score=91.87 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=59.8
Q ss_pred hcCCCEEEEEeCC-CChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC--------C------------CCCCCCCC-
Q psy17681 44 TSGKPLMVLIHKS-YCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE--------P------------QDPKYAPD- 100 (148)
Q Consensus 44 ~~~k~vli~f~a~-wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~--------~------------~~~~~~v~- 100 (148)
.+||+++|+||++ |||+|+...|.+.++.+.+... ..++.+..+.+.. . ....|++.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3599999999999 9999999999988886665443 3566776665311 0 01167766
Q ss_pred --------CCccceEEEECCCCceeeeecC
Q psy17681 101 --------GDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 101 --------~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+ +|+++++|++|++++...|
T Consensus 106 ~~~~~~~~~--~P~~~lId~~G~V~~~~~g 133 (146)
T PF08534_consen 106 MEDPGNGFG--IPTTFLIDKDGKVVYRHVG 133 (146)
T ss_dssp ECCTTTTSS--SSEEEEEETTSBEEEEEES
T ss_pred ccccccCCe--ecEEEEEECCCEEEEEEeC
Confidence 7 9999999999999999999
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.41 E-value=1.2e-12 Score=93.45 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC------CCCCCCC----C--------------
Q psy17681 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD------DEEPQDP----K-------------- 96 (148)
Q Consensus 42 a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~------~~~~~~~----~-------------- 96 (148)
+..+||+++|+|||+||++|+...|.+.++...+.... .++.++.+. ++..... +
T Consensus 35 ~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~ 114 (199)
T PTZ00056 35 SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVN 114 (199)
T ss_pred HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeecc
Confidence 34469999999999999999999999988776665332 345565431 1000000 1
Q ss_pred ------------------CCCC----C-CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 97 ------------------YAPD----G-DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 97 ------------------~~v~----~-~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
|++. + .+-|+++++|++|+++.++.| ..+.+++.+.+++.+
T Consensus 115 g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g----------~~~~~~l~~~I~~ll 178 (199)
T PTZ00056 115 GENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSP----------RTEPLELEKKIAELL 178 (199)
T ss_pred CCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCC----------CCCHHHHHHHHHHHH
Confidence 1111 1 012379999999999999999 777778877777665
No 92
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.41 E-value=2.2e-12 Score=94.09 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=68.8
Q ss_pred HHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC------CCCCC---------CCCC------
Q psy17681 40 QAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD------DEEPQ---------DPKY------ 97 (148)
Q Consensus 40 ~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~------~~~~~---------~~~~------ 97 (148)
..+..+||+++|+|||+||++|+...|.+.++.+.++... .++.++.+. ++... ...|
T Consensus 93 sLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 93 ALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred eHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCcccccc
Confidence 3344569999999999999999999999988877665432 345565431 00000 0011
Q ss_pred CCCC----------------------CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 98 APDG----------------------DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 98 ~v~~----------------------~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
...+ .+.|+++++|++|+++.++.| ..+.+++.+.+++.|.
T Consensus 173 D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G----------~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 173 DVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP----------TTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC----------CCCHHHHHHHHHHHhc
Confidence 0000 125999999999999999999 8888899888888763
No 93
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.39 E-value=5.2e-13 Score=85.72 Aligned_cols=78 Identities=21% Similarity=0.383 Sum_probs=58.9
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEEEecCCC----------------------CCCCCCCCCC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNISDD----------------------EEPQDPKYAP 99 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~----------------------~~~~~~~~~v 99 (148)
...+|+++|.||++||++|+...+.+.+...... ..-.++.++++.+ .......|++
T Consensus 16 ~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 16 DLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred HcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 3348999999999999999999988887665543 1224566777753 0112237888
Q ss_pred CCCccceEEEECCCCceeeeecC
Q psy17681 100 DGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 100 ~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
.+ +|+++++|++|+++.+..|
T Consensus 96 ~~--~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RG--LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred Cc--cceEEEECCCCcEEEEecC
Confidence 88 9999999999999988765
No 94
>PLN02412 probable glutathione peroxidase
Probab=99.39 E-value=1.7e-12 Score=90.25 Aligned_cols=93 Identities=12% Similarity=0.068 Sum_probs=65.2
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC------CCC-------------------------
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD------DEE------------------------- 91 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~------~~~------------------------- 91 (148)
.+||+++|+||++||++|+...|.+.++...+.... .++.++.+. ++.
T Consensus 27 ~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 27 YKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred hCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 358999999999999999988888877666655432 234454321 000
Q ss_pred -CCCCCCC-------------CCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 92 -PQDPKYA-------------PDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 92 -~~~~~~~-------------v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
.....|+ +.+ .|+++++|++|+++.++.| ..+.+++.+.+++.|+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~--~p~tflId~~G~vv~~~~g----------~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKW--NFTKFLVSKEGKVVQRYAP----------TTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCC--CCeeEEECCCCcEEEEECC----------CCCHHHHHHHHHHHHh
Confidence 0000111 333 6999999999999999999 8888888888887764
No 95
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.38 E-value=2.1e-12 Score=102.06 Aligned_cols=95 Identities=13% Similarity=0.258 Sum_probs=70.2
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhh-cCCc--EEEecCCCCCCCCCCCCCCCCccceEEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKF--EMVNISDDEEPQDPKYAPDGDYVPRILYF 110 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~--v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~ 110 (148)
++++.+ ...+++++|.|||+||++|+.+.|.+.+.+..... ...+ +.+|++.+ .... +++.+ +||++++
T Consensus 355 ~f~~~v---~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~~-~~i~~--~Pt~~~~ 426 (462)
T TIGR01130 355 NFDEIV---LDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVPP-FEVEG--FPTIKFV 426 (462)
T ss_pred CHHHHh---ccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccCC-CCccc--cCEEEEE
Confidence 555543 34689999999999999999999999988877665 2234 44665543 3333 89999 9999999
Q ss_pred CCCCc-eeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 111 GPQGE-PKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 111 ~~~G~-~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.++++ ....+.| ..+.+.+.+++++-
T Consensus 427 ~~~~~~~~~~~~g----------~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 427 PAGKKSEPVPYDG----------DRTLEDFSKFIAKH 453 (462)
T ss_pred eCCCCcCceEecC----------cCCHHHHHHHHHhc
Confidence 85544 2356778 78889998888753
No 96
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.35 E-value=2.6e-12 Score=91.08 Aligned_cols=72 Identities=14% Similarity=0.347 Sum_probs=52.1
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC-------------C------CCCCCCCCCCCcc
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDE-------------E------PQDPKYAPDGDYV 104 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~-------------~------~~~~~~~v~~~~~ 104 (148)
.+||+++|+||++|||+|+.+.|.+.+.... ...+++.++.+..+ . .....|++.+ +
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~--~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~--~ 147 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPIIKSIARA--EETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK--I 147 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHHHHHHHHh--cCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc--c
Confidence 4689999999999999999999988765432 22355666533200 0 0012788888 9
Q ss_pred ceEEEECCCCceeee
Q psy17681 105 PRILYFGPQGEPKSQ 119 (148)
Q Consensus 105 Pt~~~~~~~G~~~~~ 119 (148)
|+.+++|++|+++.+
T Consensus 148 P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 148 PYGVLLDQDGKIRAK 162 (189)
T ss_pred ceEEEECCCCeEEEc
Confidence 999999999999875
No 97
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.34 E-value=6.8e-12 Score=82.21 Aligned_cols=99 Identities=11% Similarity=0.121 Sum_probs=76.0
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCC----CChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC---CCCCCCCCCccce
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKS----YCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ---DPKYAPDGDYVPR 106 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~----wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~---~~~~~v~~~~~Pt 106 (148)
.+.++++.+++++|.++|++|++ ||.+| +..+.+.....-.+.+|+....|.+.++. ...+++.+ +|+
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc---~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~--~P~ 79 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFC---RNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERT--YPF 79 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHH---HHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCC--CCE
Confidence 57899999999999999999999 77777 34444444444456688775444433222 22788989 999
Q ss_pred EEEE---CCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 107 ILYF---GPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 107 ~~~~---~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++++ +.+++++.++.| +.++++++..|+.+.
T Consensus 80 ~~~l~~~~~~~~vv~~i~G----------~~~~~~ll~~L~~~~ 113 (116)
T cd02991 80 LAMIMLKDNRMTIVGRLEG----------LIQPEDLINRLTFIM 113 (116)
T ss_pred EEEEEecCCceEEEEEEeC----------CCCHHHHHHHHHHHH
Confidence 9999 666778999999 999999999998875
No 98
>PHA02125 thioredoxin-like protein
Probab=99.34 E-value=1.8e-12 Score=78.58 Aligned_cols=60 Identities=15% Similarity=0.308 Sum_probs=43.5
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
++.|||+||++|+.+.|.+.+. ...++.+|.+.. .....+|++.+ +||++ +|+.+.+..|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~------~~~~~~vd~~~~-~~l~~~~~v~~--~PT~~----~g~~~~~~~G 61 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV------EYTYVDVDTDEG-VELTAKHHIRS--LPTLV----NTSTLDRFTG 61 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH------hheEEeeeCCCC-HHHHHHcCCce--eCeEE----CCEEEEEEeC
Confidence 7899999999999999998532 112344444331 22334899999 99986 6888888888
No 99
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.33 E-value=4e-12 Score=91.76 Aligned_cols=87 Identities=15% Similarity=0.265 Sum_probs=62.8
Q ss_pred CCCEEEEEeC---CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC-CCCCCCCCCCCccceEEEECCCCcee-eee
Q psy17681 46 GKPLMVLIHK---SYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE-PQDPKYAPDGDYVPRILYFGPQGEPK-SQV 120 (148)
Q Consensus 46 ~k~vli~f~a---~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~-~~~~~~~v~~~~~Pt~~~~~~~G~~~-~~~ 120 (148)
+...++.|++ +||++|+.+.|.+.+.+..+. ...+..+++|.++. ....+|++.+ +||+++++ +|+.+ .++
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~--~Pt~~~f~-~g~~~~~~~ 94 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVER--VPTTIILE-EGKDGGIRY 94 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-CceEEEEecCCcccHHHHHHcCCCc--cCEEEEEe-CCeeeEEEE
Confidence 3344555776 999999999999988766552 22355677775433 3334999999 99999998 78887 488
Q ss_pred cCCCCccccccccCChhHHHHHHHhh
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.| ..+.+++.+.++..
T Consensus 95 ~G----------~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 95 TG----------IPAGYEFAALIEDI 110 (215)
T ss_pred ee----------cCCHHHHHHHHHHH
Confidence 99 77777777766654
No 100
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.30 E-value=1.4e-11 Score=80.38 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred eHHHHHHHHHhcCCCEEEEEeC--CCCh---hhhhhhHhhcCchHHHhhcCCcEEEecCCCC------CCCCCCCCCC--
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHK--SYCA---ACHELSPKFAASPEIAELAPKFEMVNISDDE------EPQDPKYAPD-- 100 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a--~wC~---~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~------~~~~~~~~v~-- 100 (148)
+|++.+ .+++.+||.||| |||+ +|+++.|.+..... ..+...||.++ .....+|+|+
T Consensus 10 nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 10 TFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred hHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 555544 458999999999 9999 99999988865321 24443444422 2223499999
Q ss_pred CCccceEEEECCCCc--eeeeecCCCCcccccccc-CChhHHHHHHHh
Q psy17681 101 GDYVPRILYFGPQGE--PKSQVFNAKSPQVYRHYY-YDVPSIVQAMKS 145 (148)
Q Consensus 101 ~~~~Pt~~~~~~~G~--~~~~~~G~~~~~~~~~~~-~~~~~l~~~l~~ 145 (148)
+ +||+.+|. +|. ....+.| . ++.+.|.++|++
T Consensus 80 g--yPTl~lF~-~g~~~~~~~Y~G----------~~r~~~~lv~~v~~ 114 (116)
T cd03007 80 S--YPVIYLFH-GGDFENPVPYSG----------ADVTVDALQRFLKG 114 (116)
T ss_pred C--CCEEEEEe-CCCcCCCccCCC----------CcccHHHHHHHHHh
Confidence 8 99999998 553 3345667 6 788999888864
No 101
>KOG4277|consensus
Probab=99.30 E-value=4.9e-12 Score=93.74 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=63.8
Q ss_pred eeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEE---EecCCCCCCCCCCCCCCCCccceEEE
Q psy17681 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEM---VNISDDEEPQDPKYAPDGDYVPRILY 109 (148)
Q Consensus 33 ~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~---v~v~~~~~~~~~~~~v~~~~~Pt~~~ 109 (148)
.++++.+...+ ....++|+||||||+||+++.|.+.+.....+....=|. .|.++- +....+|+++| +||+.+
T Consensus 31 eDLddkFkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiAnefgiqG--YPTIk~ 106 (468)
T KOG4277|consen 31 EDLDDKFKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIANEFGIQG--YPTIKF 106 (468)
T ss_pred hhhhHHhhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhHhhhccCC--CceEEE
Confidence 36676666543 455889999999999999999999876544332221122 333321 22334999999 999999
Q ss_pred ECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 110 FGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 110 ~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
+. |.....+-| .+..+.|++...
T Consensus 107 ~k--gd~a~dYRG----------~R~Kd~iieFAh 129 (468)
T KOG4277|consen 107 FK--GDHAIDYRG----------GREKDAIIEFAH 129 (468)
T ss_pred ec--CCeeeecCC----------CccHHHHHHHHH
Confidence 96 444445667 666777766543
No 102
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.29 E-value=1.4e-12 Score=79.27 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=45.8
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
-|.||++|||+|+.+.|.+.+....... .+-.+++++ .....+|++.+ +||+++ ||+++ ..|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~~--~~~a~~~~v~~--vPti~i---~G~~~--~~G 63 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVTD--MNEILEAGVTA--TPGVAV---DGELV--IMG 63 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeCC--HHHHHHcCCCc--CCEEEE---CCEEE--EEe
Confidence 3789999999999999999876655432 344455552 22344799999 999888 78877 567
No 103
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.29 E-value=1.4e-11 Score=84.35 Aligned_cols=92 Identities=15% Similarity=0.138 Sum_probs=63.3
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC------CCC------------------------
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD------DEE------------------------ 91 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~------~~~------------------------ 91 (148)
.-+||+++|+|||+|||+|+...|.+.+....+.... .++.++.+. ++.
T Consensus 19 ~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 19 KYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred HhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 4469999999999999999999888877666554322 334444210 000
Q ss_pred --CCCC--CCCC---CCCccce----EEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 92 --PQDP--KYAP---DGDYVPR----ILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 92 --~~~~--~~~v---~~~~~Pt----~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.... .|.+ .+ .|+ ++++|++|+++.++.| ..+.+++.+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~--~p~~~~~tflID~~G~v~~~~~g----------~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKK--EPRWNFWKYLVNPEGQVVKFWRP----------EEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCC--CCCCccEEEEEcCCCcEEEEECC----------CCCHHHHHHHHHHh
Confidence 0000 1111 13 787 9999999999999999 78888888888764
No 104
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.29 E-value=6e-12 Score=90.85 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=59.5
Q ss_pred cCCCEEEE-EeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 45 SGKPLMVL-IHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 45 ~~k~vli~-f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
.++|+.|. ||++||++|+.+.+.+....... ....+..+|.+.+ +....+|++.+ +||+++.+ +|.. +.|
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~-~~~~~~~~V~~--vPtl~i~~-~~~~---~~G- 201 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANEN-PDLAEKYGVMS--VPKIVINK-GVEE---FVG- 201 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCC-HHHHHHhCCcc--CCEEEEec-CCEE---EEC-
Confidence 45666555 99999999999998876654332 2223445666543 33344899999 99999875 6653 778
Q ss_pred CCccccccccCChhHHHHHHHhh
Q psy17681 124 KSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..+.+++.+.+..|
T Consensus 202 ---------~~~~~~l~~~l~~~ 215 (215)
T TIGR02187 202 ---------AYPEEQFLEYILSA 215 (215)
T ss_pred ---------CCCHHHHHHHHHhC
Confidence 88889999888765
No 105
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.29 E-value=2.8e-12 Score=81.82 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=67.6
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCC--CCccceEEEECCC-CceeeeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPD--GDYVPRILYFGPQ-GEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~--~~~~Pt~~~~~~~-G~~~~~~~G 122 (148)
++|+++.|+++||++|+.+.+.+.+.+..++..-.|+.+|.+.. +.....|++. + +|++++++.+ |+......|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-~~~~~~~~i~~~~--~P~~~~~~~~~~~k~~~~~~ 88 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-GRHLEYFGLKEED--LPVIAIINLSDGKKYLMPEE 88 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-HHHHHHcCCChhh--CCEEEEEecccccccCCCcc
Confidence 79999999999999999999999988877775556677777763 3344588998 7 9999999853 554443444
Q ss_pred CCCccccccccCChhHHHHHHHhh
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..+.+.|.+++++.
T Consensus 89 ----------~~~~~~l~~fi~~~ 102 (103)
T cd02982 89 ----------ELTAESLEEFVEDF 102 (103)
T ss_pred ----------ccCHHHHHHHHHhh
Confidence 45788888888764
No 106
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.27 E-value=9e-12 Score=85.26 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=31.5
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEec
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNI 86 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v 86 (148)
..+||+++|+|||+||+ |+...|.+.++...++... .++.++.
T Consensus 19 ~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 19 KYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred HhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 33599999999999999 9999998887766554322 3344544
No 107
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.25 E-value=4.9e-11 Score=84.11 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=64.7
Q ss_pred HHHhcCCCE-EEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCC---CCC--------------C----CC---
Q psy17681 41 AAKTSGKPL-MVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISD---DEE--------------P----QD--- 94 (148)
Q Consensus 41 ~a~~~~k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~---~~~--------------~----~~--- 94 (148)
.+.-+||++ ++.+||+|||+|+...|.+.+..+.++... .++.++++. .+. . ..
T Consensus 35 Ls~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~ 114 (183)
T PTZ00256 35 LSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKI 114 (183)
T ss_pred HHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEE
Confidence 334468975 456699999999999999988776665432 334555431 000 0 00
Q ss_pred -----C---C---------------CCCCCCccce---EEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 95 -----P---K---------------YAPDGDYVPR---ILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 95 -----~---~---------------~~v~~~~~Pt---~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
. . +++.+ +|+ ++++|++|+++.++.| ..+.+.+.+.++++|+
T Consensus 115 d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~--iP~~~~tflID~~G~Iv~~~~g----------~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 115 EVNGENTHEIYKYLRRNSELFQNNTNEARQ--IPWNFAKFLIDGQGKVVKYFSP----------KVNPNEMIQDIEKLLN 182 (183)
T ss_pred ecCCCCCCHHHHHHHhhCCCCcCccccCcc--cCcceEEEEECCCCCEEEEECC----------CCCHHHHHHHHHHHhc
Confidence 0 0 12334 894 6999999999999999 7788888888887764
No 108
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.22 E-value=2.6e-11 Score=84.47 Aligned_cols=100 Identities=14% Similarity=0.160 Sum_probs=67.3
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhh-cCCcEEEecCCC------CCCC----------------------CC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKFEMVNISDD------EEPQ----------------------DP 95 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~v~v~v~~~------~~~~----------------------~~ 95 (148)
.++++||+||++|||.|....+.+.++...+.. +-.++.++++.. +... ..
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 589999999999999999998888877665542 235566766541 1100 01
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccc-cccCChhHHHHHHHhhhC
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYR-HYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~-~~~~~~~~l~~~l~~al~ 148 (148)
.|++.. +|+++++|++|++++... ....... ....+.+++.+.++++|+
T Consensus 104 ~~~v~~--~P~~~lid~~G~v~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 104 AYGAAC--TPDFFLFDPDGKLVYRGR--IDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HcCCCc--CCcEEEECCCCeEEEeec--ccCCcccccccccHHHHHHHHHHHHc
Confidence 667777 999999999999986521 1111111 123556788888887763
No 109
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.17 E-value=5.5e-11 Score=79.82 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=59.4
Q ss_pred cCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC------------------C--CCCCCCCCCCC
Q psy17681 45 SGKPLMVLIH-KSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDE------------------E--PQDPKYAPDGD 102 (148)
Q Consensus 45 ~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~------------------~--~~~~~~~v~~~ 102 (148)
+||+++|+|| +.||+.|..+.+.+.+........ -.++.+.++..+ . .....|++..
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~- 100 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWG- 100 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcc-
Confidence 4899999999 599999999988887665544322 244556554310 0 0001566655
Q ss_pred cc---------ceEEEECCCCceeeeecCCCCccccccccCChhHHHHH
Q psy17681 103 YV---------PRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQA 142 (148)
Q Consensus 103 ~~---------Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~ 142 (148)
. |+++++|++|+++..+.| ....+.+.+.
T Consensus 101 -~~~~~~~~~~p~~~lid~~G~v~~~~~g----------~~~~~~~~~~ 138 (140)
T cd03017 101 -EKKKKYMGIERSTFLIDPDGKIVKVWRK----------VKPKGHAEEV 138 (140)
T ss_pred -ccccccCCcceeEEEECCCCEEEEEEec----------CCccchHHHH
Confidence 5 999999999999999999 6655555443
No 110
>KOG2501|consensus
Probab=99.12 E-value=2.6e-11 Score=82.28 Aligned_cols=74 Identities=24% Similarity=0.486 Sum_probs=55.4
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhh-cCCc--EEEecCCCCCCC------------------------CCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-APKF--EMVNISDDEEPQ------------------------DPK 96 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~--v~v~v~~~~~~~------------------------~~~ 96 (148)
-+||.|.++|.|.|||+|+.+.|.+.+..+.-.. ...| |.|+-|++.... ..+
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 3499999999999999999999998877664332 2345 556666632211 117
Q ss_pred CCCCCCccceEEEECCCCceeee
Q psy17681 97 YAPDGDYVPRILYFGPQGEPKSQ 119 (148)
Q Consensus 97 ~~v~~~~~Pt~~~~~~~G~~~~~ 119 (148)
|++.+ +|++.+++++|+.+.+
T Consensus 111 y~v~~--iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 111 YEVKG--IPALVILKPDGTVVTE 131 (157)
T ss_pred cccCc--CceeEEecCCCCEehH
Confidence 88999 9999999999987753
No 111
>KOG0912|consensus
Probab=99.11 E-value=1.1e-10 Score=86.52 Aligned_cols=90 Identities=19% Similarity=0.277 Sum_probs=71.5
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHh--h-cCCcEEEecCCCCCCCC-CCCCCCCCccceEEEECCCCceee-e
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAE--L-APKFEMVNISDDEEPQD-PKYAPDGDYVPRILYFGPQGEPKS-Q 119 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~--~-~~~~v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~~~G~~~~-~ 119 (148)
.+..++|.|||+||+.++.+.|.|++.+.... . ....|-.+||++..... .+|.|.. +||+-++. +|.... .
T Consensus 12 s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~K--yPTlKvfr-nG~~~~rE 88 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINK--YPTLKVFR-NGEMMKRE 88 (375)
T ss_pred cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhcccc--Cceeeeee-ccchhhhh
Confidence 47899999999999999999999998877543 2 23556677777654443 4999999 99999997 898876 5
Q ss_pred ecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 120 VFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 120 ~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+-| -++.+.|.+.+++-+
T Consensus 89 YRg----------~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 89 YRG----------QRSVEALIEFIEKQL 106 (375)
T ss_pred hcc----------chhHHHHHHHHHHHh
Confidence 777 778899988887654
No 112
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.04 E-value=1.1e-09 Score=76.51 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=65.2
Q ss_pred HhcCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC---------------CCC--------C---
Q psy17681 43 KTSGKPLMVLIH-KSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDE---------------EPQ--------D--- 94 (148)
Q Consensus 43 ~~~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~---------------~~~--------~--- 94 (148)
..+||+++|+|| ++||++|....+.+.+........ -.++.|++|... ... .
T Consensus 26 ~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 26 DYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred HhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 345899999999 899999999988888776655432 244556655410 000 0
Q ss_pred -CCCCCCC----CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 95 -PKYAPDG----DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 95 -~~~~v~~----~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..|++.. ...|+++++|++|+++..+.+... .-.+.+++++.++++
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~------~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLP------VGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCC------CCCCHHHHHHHHHHh
Confidence 0566641 127899999999999999877321 123456777777654
No 113
>KOG1731|consensus
Probab=99.03 E-value=3.2e-10 Score=90.12 Aligned_cols=76 Identities=21% Similarity=0.413 Sum_probs=58.1
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEE-ecCCCCCCCCC---CCCCCCCccceEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMV-NISDDEEPQDP---KYAPDGDYVPRILY 109 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v-~v~~~~~~~~~---~~~v~~~~~Pt~~~ 109 (148)
+|+.++..+ .+.-+|.||++|||+|++++|++.+.++.-......+.+ -||+.++.... .|+|.+ +|++-+
T Consensus 48 tf~~~v~~~---~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~--~Ptlry 122 (606)
T KOG1731|consen 48 TFNAAVFGS---RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG--YPTLRY 122 (606)
T ss_pred hhHHHhccc---chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC--Cceeee
Confidence 566666543 368899999999999999999999988877666666553 35554433332 999999 999999
Q ss_pred ECCCC
Q psy17681 110 FGPQG 114 (148)
Q Consensus 110 ~~~~G 114 (148)
+.++-
T Consensus 123 f~~~~ 127 (606)
T KOG1731|consen 123 FPPDS 127 (606)
T ss_pred cCCcc
Confidence 98883
No 114
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.03 E-value=2e-10 Score=75.43 Aligned_cols=73 Identities=16% Similarity=0.415 Sum_probs=54.4
Q ss_pred cCCCEEEEEeCC-CChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC---------C-C----------CCCCCCCC--
Q psy17681 45 SGKPLMVLIHKS-YCAACHELSPKFAASPEIAELA-PKFEMVNISDDE---------E-P----------QDPKYAPD-- 100 (148)
Q Consensus 45 ~~k~vli~f~a~-wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~---------~-~----------~~~~~~v~-- 100 (148)
+||+++|.||++ ||++|+...+.+.+.....+.. -+++.++.+..+ . . ....|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 103 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE 103 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence 489999999999 9999999999988877655532 256777776521 0 0 01166776
Q ss_pred ----CCccceEEEECCCCceeee
Q psy17681 101 ----GDYVPRILYFGPQGEPKSQ 119 (148)
Q Consensus 101 ----~~~~Pt~~~~~~~G~~~~~ 119 (148)
. +|+++++|++|+++++
T Consensus 104 ~~~~~--~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 104 KDTLA--LPAVFLIDPDGKIRYA 124 (124)
T ss_dssp TTSEE--SEEEEEEETTSBEEEE
T ss_pred cCCce--EeEEEEECCCCEEEeC
Confidence 6 9999999999998863
No 115
>KOG0191|consensus
Probab=99.02 E-value=6.2e-10 Score=86.78 Aligned_cols=90 Identities=19% Similarity=0.349 Sum_probs=66.7
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC-CCCCCCCCccceEEEECCCCceeeeec
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD-PKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~-~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
...+++++|.||+|||++|+.+.|++.+.....+. ......+|.+..... ..|++++ +||+.++.++ .......
T Consensus 44 ~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~g--fPtl~~f~~~-~~~~~~~ 118 (383)
T KOG0191|consen 44 LKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHKDLCEKYGIQG--FPTLKVFRPG-KKPIDYS 118 (383)
T ss_pred hccCCceEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhHHHHHhcCCcc--CcEEEEEcCC-Cceeecc
Confidence 55689999999999999999999999866555544 223345555443333 3999999 9999999866 5556667
Q ss_pred CCCCccccccccCChhHHHHHHHhhh
Q psy17681 122 NAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 122 G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
| ..+.+.+.+.+...+
T Consensus 119 ~----------~~~~~~~~~~~~~~~ 134 (383)
T KOG0191|consen 119 G----------PRNAESLAEFLIKEL 134 (383)
T ss_pred C----------cccHHHHHHHHHHhh
Confidence 7 677788877776543
No 116
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.01 E-value=1.4e-09 Score=75.58 Aligned_cols=77 Identities=12% Similarity=0.109 Sum_probs=53.7
Q ss_pred HhcCCCEEEEEeCCC-ChhhhhhhHhhcCchHHHhhcCCcEEEecCCC--------CC-----------CC---CCCCCC
Q psy17681 43 KTSGKPLMVLIHKSY-CAACHELSPKFAASPEIAELAPKFEMVNISDD--------EE-----------PQ---DPKYAP 99 (148)
Q Consensus 43 ~~~~k~vli~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~--------~~-----------~~---~~~~~v 99 (148)
.-+||+++|+||++| |++|....+.+.+...... ...++.++.|.. +. .. ...|++
T Consensus 41 ~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 41 DFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred HhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 345999999999999 9999999888876544331 224455666541 00 00 116666
Q ss_pred CCCccc---------eEEEECCCCceeeeecC
Q psy17681 100 DGDYVP---------RILYFGPQGEPKSQVFN 122 (148)
Q Consensus 100 ~~~~~P---------t~~~~~~~G~~~~~~~G 122 (148)
.+ .| +++++|++|+++....+
T Consensus 120 ~~--~~~~~~g~~~r~tfvId~~G~I~~~~~~ 149 (167)
T PRK00522 120 AI--AEGPLKGLLARAVFVLDENNKVVYSELV 149 (167)
T ss_pred ee--cccccCCceeeEEEEECCCCeEEEEEEC
Confidence 55 56 99999999999998876
No 117
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.01 E-value=1.8e-09 Score=73.85 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=52.1
Q ss_pred hcCCCEEEEEeCC-CChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC------------------CC--CCCCCCCCC
Q psy17681 44 TSGKPLMVLIHKS-YCAACHELSPKFAASPEIAELA-PKFEMVNISDDE------------------EP--QDPKYAPDG 101 (148)
Q Consensus 44 ~~~k~vli~f~a~-wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~------------------~~--~~~~~~v~~ 101 (148)
.+||+++|+||++ ||+.|....+.+.+........ -.++.|+.|..+ .. ....|++..
T Consensus 28 ~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 28 FQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred hCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 4589999999975 7888998888776655544332 244556554310 00 011555543
Q ss_pred C----------ccceEEEECCCCceeeeecC
Q psy17681 102 D----------YVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 102 ~----------~~Pt~~~~~~~G~~~~~~~G 122 (148)
. ..|+++++|++|+++..+.|
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 0 02788999999999999999
No 118
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.01 E-value=1.3e-09 Score=77.16 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=64.5
Q ss_pred HhcCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhh-cCCcEEEecCCC--------CC----CC--------C----CC
Q psy17681 43 KTSGKPLMVLIH-KSYCAACHELSPKFAASPEIAEL-APKFEMVNISDD--------EE----PQ--------D----PK 96 (148)
Q Consensus 43 ~~~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~v~v~v~~~--------~~----~~--------~----~~ 96 (148)
.-.||+++|+|| ++||++|....+.+.+....... ...++.|++|.. .. .. . ..
T Consensus 28 d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 28 DVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred HHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 345999999999 99999999998888776554432 224566766641 00 00 0 15
Q ss_pred CCCC----CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 97 YAPD----GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 97 ~~v~----~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
|++. +...|+++++|++|+++....+... .-.+.+++++.++++
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~------~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNG------IGRDASELLRKIKAA 155 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCC------CCCCHHHHHHHHHHh
Confidence 6664 1016999999999999988755211 123677777777654
No 119
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.98 E-value=4.2e-10 Score=66.39 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=43.5
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
+..|+++|||+|+.+.+.+.++.... ....+..+|++.+ .....++++.+ +||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~-~~l~~~~~i~~--vPti~i---~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEF-PDLADEYGVMS--VPAIVI---NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccC-HhHHHHcCCcc--cCEEEE---CCEEE
Confidence 67899999999999999997764432 2235666777753 33445899999 999754 35544
No 120
>KOG0914|consensus
Probab=98.97 E-value=3.2e-09 Score=75.46 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=74.2
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcC-CcEEEecCCCCCCCCCCCCCCC----CccceEEEECCCCc
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP-KFEMVNISDDEEPQDPKYAPDG----DYVPRILYFGPQGE 115 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~~~~~~~~~~~v~~----~~~Pt~~~~~~~G~ 115 (148)
..+++.+.++|.|+|.|.|.|+...|.+.++...+..+. +|-.+|+.+- ++..++|+|.. .+.||.+++. +|+
T Consensus 139 l~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a~kfris~s~~srQLPT~ilFq-~gk 216 (265)
T KOG0914|consen 139 LDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVAAKFRISLSPGSRQLPTYILFQ-KGK 216 (265)
T ss_pred hccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChHHheeeccCcccccCCeEEEEc-cch
Confidence 347778899999999999999999999999988887554 7888999874 55666888752 3599999996 899
Q ss_pred eeeeecCCCCc-cccccccCCh
Q psy17681 116 PKSQVFNAKSP-QVYRHYYYDV 136 (148)
Q Consensus 116 ~~~~~~G~~~~-~~~~~~~~~~ 136 (148)
++.+..-.+.+ +...|.+.+.
T Consensus 217 E~~RrP~vd~~gra~s~~fSee 238 (265)
T KOG0914|consen 217 EVSRRPDVDVKGRAVSFPFSEE 238 (265)
T ss_pred hhhcCccccccCCcccccccHH
Confidence 99888876666 5555555543
No 121
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.95 E-value=2.7e-09 Score=72.36 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=52.5
Q ss_pred cC-CCEEEEEe-CCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCC------------------CCC----CCCCCCC
Q psy17681 45 SG-KPLMVLIH-KSYCAACHELSPKFAASPEIAELA-PKFEMVNISDD------------------EEP----QDPKYAP 99 (148)
Q Consensus 45 ~~-k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~------------------~~~----~~~~~~v 99 (148)
.| |+++|.|| ++||+.|....+.+.+........ -.++.|+.+.. +.. ....|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 46 88888888 999999999888887766554422 24455655540 000 0114555
Q ss_pred C----CCccceEEEECCCCceeeeecCC
Q psy17681 100 D----GDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 100 ~----~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
. +...|+++++|++|+++....|.
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecC
Confidence 4 20134899999999999999994
No 122
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.94 E-value=2e-09 Score=72.72 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=50.2
Q ss_pred CCCEEEE-EeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC------------------C--CCCCCCCC---
Q psy17681 46 GKPLMVL-IHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE------------------P--QDPKYAPD--- 100 (148)
Q Consensus 46 ~k~vli~-f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~------------------~--~~~~~~v~--- 100 (148)
+++++|. |+++||++|+...+.+.+........ ..++.|+.+..+. . ....|++.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~~ 102 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRSL 102 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceecC
Confidence 4555555 56999999999999988766655422 2445566554110 0 00155552
Q ss_pred ------------------------CCccceEEEECCCCceeeeecC
Q psy17681 101 ------------------------GDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 101 ------------------------~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
....|+++++|++|++++.+.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 103 PWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred cHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 0129999999999999988876
No 123
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.93 E-value=1e-09 Score=68.66 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=49.9
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+..-+..|+++||++|....+.+.+...... +..+..+|++.. +....+|++.+ +|++++ ||+.+. .|
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~-~e~a~~~~V~~--vPt~vi---dG~~~~--~G 79 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALF-QDEVEERGIMS--VPAIFL---NGELFG--FG 79 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhC-HHHHHHcCCcc--CCEEEE---CCEEEE--eC
Confidence 4445888889999999999999876654332 346677887753 34455999999 999965 688776 47
No 124
>KOG2244|consensus
Probab=98.91 E-value=4.8e-09 Score=83.20 Aligned_cols=115 Identities=17% Similarity=0.302 Sum_probs=93.3
Q ss_pred Ccccce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHH-hhcCCcEEEecCCCCCCCCC---------C
Q psy17681 28 GHINWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIA-ELAPKFEMVNISDDEEPQDP---------K 96 (148)
Q Consensus 28 ~~i~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~v~v~v~~~~~~~~~---------~ 96 (148)
..++|. +-+++++.++.++||+++...-+.|++|+.|..+-...++.. -.+.+||.++||+++.+..+ .
T Consensus 93 npvdwypwgqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~as 172 (786)
T KOG2244|consen 93 NPVDWYPWGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVAS 172 (786)
T ss_pred CCcccCcchHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhc
Confidence 346888 678999999999999999999999999999977766666654 46779999999998877655 2
Q ss_pred CCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 97 YAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 97 ~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.+-.| +|..++++|+-.++. -|++.++.=++...+...++..++.+
T Consensus 173 sg~GG--WPmsV~LTPdL~Plv--gGTYFPP~d~~g~~gF~TvL~~I~~~ 218 (786)
T KOG2244|consen 173 SGGGG--WPMSVFLTPDLKPLV--GGTYFPPNDNYGRPGFKTVLKKIKDA 218 (786)
T ss_pred cCCCC--CceeEEeCCCccccc--CCcccCCCCCCCCccHHHHHHHHHHH
Confidence 34456 999999999998875 57777777777777777777777654
No 125
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.88 E-value=3.5e-09 Score=71.43 Aligned_cols=77 Identities=9% Similarity=0.057 Sum_probs=53.9
Q ss_pred cCCCEEEEEeCCC-ChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC-------------CC----CC-----CCCCCCC
Q psy17681 45 SGKPLMVLIHKSY-CAACHELSPKFAASPEIAELAPKFEMVNISDDE-------------EP----QD-----PKYAPDG 101 (148)
Q Consensus 45 ~~k~vli~f~a~w-C~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~-------------~~----~~-----~~~~v~~ 101 (148)
.||+++|+||++| |++|+...+.+.+...... .-.++.|++|... .. .. ..|++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence 5899999999998 6999999999887665542 2355667766310 00 00 1444421
Q ss_pred ----CccceEEEECCCCceeeeecC
Q psy17681 102 ----DYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 102 ----~~~Pt~~~~~~~G~~~~~~~G 122 (148)
...|+++++|++|+++....|
T Consensus 104 ~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 104 KDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred ccCCccceEEEEEcCCCeEEEEEEC
Confidence 116899999999999999988
No 126
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.85 E-value=1.3e-08 Score=72.10 Aligned_cols=95 Identities=15% Similarity=0.140 Sum_probs=64.0
Q ss_pred hcCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC------------CC------------CCCC
Q psy17681 44 TSGKPLMVLIH-KSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE------------PQ------------DPKY 97 (148)
Q Consensus 44 ~~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~------------~~------------~~~~ 97 (148)
-.||+++|+|| ++||+.|....+.+.+........ -.++.++.|.... .. ...|
T Consensus 29 ~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 29 TEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred hCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 35899999999 999999999988887665554322 2445566654100 00 0166
Q ss_pred CCC----CCcc--ceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 98 APD----GDYV--PRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 98 ~v~----~~~~--Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
++. + + |+++++|++|++++...+.... -.+.+++++.++++
T Consensus 109 gv~~~~~g--~~~r~tfIID~~G~I~~~~~~~~~~------~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEG--LADRATFVVDPQGIIQAIEVTAEGI------GRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCC--ceeeEEEEECCCCEEEEEEEeCCCC------CCCHHHHHHHHHhh
Confidence 662 4 5 9999999999999876552111 24688888877654
No 127
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.80 E-value=1.9e-08 Score=72.03 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=61.5
Q ss_pred hcCCCEEE-EEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC------------CCC--------------CC
Q psy17681 44 TSGKPLMV-LIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDE------------EPQ--------------DP 95 (148)
Q Consensus 44 ~~~k~vli-~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~------------~~~--------------~~ 95 (148)
.+||+++| +||++||+.|....+.+.+.....+.. -.++.+++|... ... ..
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 35887765 689999999999888887665544422 244556666310 000 00
Q ss_pred CCCCC----CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 96 KYAPD----GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 96 ~~~v~----~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.|++. +..+|+++++|++|++.....+... .-++.+++++.++..
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~------~gr~~~ellr~l~~l 153 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAE------TGRNIDEIIRITKAL 153 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCCEEEEEEEeCCC------CCCCHHHHHHHHHHh
Confidence 56653 1128999999999999877643110 135678887777654
No 128
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.79 E-value=1e-08 Score=68.67 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=54.9
Q ss_pred cCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhh-cCCcEEEecCCCC--------C-CCC------------CCCCCCC
Q psy17681 45 SGKPLMVLIH-KSYCAACHELSPKFAASPEIAEL-APKFEMVNISDDE--------E-PQD------------PKYAPDG 101 (148)
Q Consensus 45 ~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~-~~~~v~v~v~~~~--------~-~~~------------~~~~v~~ 101 (148)
.||+++|+|| +.||++|....+.+.+....... ...++.+..+..+ . ... ..|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 5999999999 78999999999988877665532 2355667665411 0 000 0444443
Q ss_pred -------CccceEEEECCCCceeeeecCC
Q psy17681 102 -------DYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 102 -------~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
...|+++++|++|+++.+..|.
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEecC
Confidence 0145899999999999999984
No 129
>PRK15000 peroxidase; Provisional
Probab=98.77 E-value=2.6e-08 Score=71.23 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=64.9
Q ss_pred cCCCEEEEEeC-CCChhhhhhhHhhcCchHHHhhcC-CcEEEecCCCC------------CCC--C-------C------
Q psy17681 45 SGKPLMVLIHK-SYCAACHELSPKFAASPEIAELAP-KFEMVNISDDE------------EPQ--D-------P------ 95 (148)
Q Consensus 45 ~~k~vli~f~a-~wC~~C~~~~~~~~~~~~~~~~~~-~~v~v~v~~~~------------~~~--~-------~------ 95 (148)
+||+++|+||+ +||+.|....+.+.+.....+..+ .++.+++|... ... . .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 58999999999 599999999988887666554322 44556666411 000 0 0
Q ss_pred CCCCC------CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 96 KYAPD------GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 96 ~~~v~------~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.|++. + .|+++++|++|+++....|.... -++.+++++.++..
T Consensus 113 ~ygv~~~~~g~~--~r~tfiID~~G~I~~~~~~~~~~------gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVA--LRGSFLIDANGIVRHQVVNDLPL------GRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcE--EeEEEEECCCCEEEEEEecCCCC------CCCHHHHHHHHHHh
Confidence 56665 4 99999999999999988773221 23577777777553
No 130
>KOG0191|consensus
Probab=98.76 E-value=1.3e-08 Score=79.49 Aligned_cols=92 Identities=20% Similarity=0.330 Sum_probs=64.9
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC-CCCCCCCCCCCCCccceEEEECCCCceeeeec
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD-EEPQDPKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~-~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
...+++++|.||+|||++|+.+.|.+.+++...+....+-...++.. .......+++.+ +||+.++.++.+......
T Consensus 159 ~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~ 236 (383)
T KOG0191|consen 159 KDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRG--YPTLKLFPPGEEDIYYYS 236 (383)
T ss_pred hccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccC--CceEEEecCCCccccccc
Confidence 34578999999999999999999999988775543233333333432 122334889999 999988875555255566
Q ss_pred CCCCccccccccCChhHHHHHHHhh
Q psy17681 122 NAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 122 G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
| .++.+.+.+++++.
T Consensus 237 ~----------~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 237 G----------LRDSDSIVSFVEKK 251 (383)
T ss_pred c----------cccHHHHHHHHHhh
Confidence 6 78888888887754
No 131
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.72 E-value=7.4e-09 Score=65.82 Aligned_cols=74 Identities=20% Similarity=0.449 Sum_probs=51.7
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCC--CCCCccceEEEECCCCceeeeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYA--PDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~--v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
++++++.||++||++|+.+.|.+............++.+++.+........|+ +.. +|+++++. +|+......|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~p~~~~~~-~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRS--IPTLLLFK-DGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhcc--CCeEEEEe-Ccchhhhhhh
Confidence 88999999999999999999999877665544345566766522233334777 777 99987665 5554444443
No 132
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.71 E-value=1.4e-08 Score=68.23 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=33.4
Q ss_pred cCCCEEEEEeCCCChh-hhhhhHhhcCchHHHhhc----CCcEEEecCC
Q psy17681 45 SGKPLMVLIHKSYCAA-CHELSPKFAASPEIAELA----PKFEMVNISD 88 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~-C~~~~~~~~~~~~~~~~~----~~~v~v~v~~ 88 (148)
+||+++|.||++||++ |....+.+.+........ ..++.++.|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 5899999999999998 999988888766655432 2445566653
No 133
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.71 E-value=4.1e-08 Score=59.06 Aligned_cols=58 Identities=21% Similarity=0.446 Sum_probs=39.6
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCC-----CCCCCCccceEEEECCCCceee
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPK-----YAPDGDYVPRILYFGPQGEPKS 118 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~-----~~v~~~~~Pt~~~~~~~G~~~~ 118 (148)
++.||++||++|+++.+.+.+. ...|-.+|++.+.. .... ++..+ +|++ +++ +|+.+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~-~~~~~~~~~~~~~~--vP~i-~~~-~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEG-AADRVVSVNNGNMT--VPTV-KFA-DGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHh-HHHHHHHHhCCCce--eCEE-EEC-CCeEec
Confidence 5789999999999999988543 23455678775432 2222 46777 9996 565 676654
No 134
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.64 E-value=9.6e-09 Score=68.50 Aligned_cols=75 Identities=11% Similarity=0.255 Sum_probs=40.7
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEEECCCCceeeee
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
..++.-++.|..+|||.|+..-|.+.+..+... +..+-.+..|++ ..... ..+... +|+++++|.+|+++.+.
T Consensus 39 ~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~-~el~~~~lt~g~~~--IP~~I~~d~~~~~lg~w 114 (129)
T PF14595_consen 39 IQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDEN-KELMDQYLTNGGRS--IPTFIFLDKDGKELGRW 114 (129)
T ss_dssp --S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHH-HHHTTTTTT-SS----SSEEEEE-TT--EEEEE
T ss_pred cCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC-hhHHHHHHhCCCee--cCEEEEEcCCCCEeEEE
Confidence 345567899999999999999999987665432 112222333332 11112 345666 99999999999999876
Q ss_pred cC
Q psy17681 121 FN 122 (148)
Q Consensus 121 ~G 122 (148)
..
T Consensus 115 ge 116 (129)
T PF14595_consen 115 GE 116 (129)
T ss_dssp ES
T ss_pred cC
Confidence 54
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.63 E-value=4.1e-08 Score=55.66 Aligned_cols=61 Identities=31% Similarity=0.685 Sum_probs=42.7
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC--CCCCCCCCccceEEEECCC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD--PKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~--~~~~v~~~~~Pt~~~~~~~ 113 (148)
++.||++||++|+++.+.+.+. ......-.++.++++....... ..+++.. +|++++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGG--VPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCcc--ccEEEEEeCC
Confidence 5789999999999999988765 2222223456677766443333 2677888 9999999854
No 136
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.61 E-value=1.6e-07 Score=67.84 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=60.6
Q ss_pred cCCCE-EEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC--------------CC------------CCCC
Q psy17681 45 SGKPL-MVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDE--------------EP------------QDPK 96 (148)
Q Consensus 45 ~~k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~--------------~~------------~~~~ 96 (148)
.||++ |+.|+++|||.|....+.+.+........ ..++.+++|... .. ....
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 47775 67899999999999988888766555432 244556666410 00 0015
Q ss_pred CCCC-------CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 97 YAPD-------GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 97 ~~v~-------~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
|++. . .|+++++|++|+++......... -...+++++.+++
T Consensus 107 yg~~~~~~~~~~--~R~tfIID~dG~Ir~~~~~p~~~------gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNT--VRAVFIVDDKGTIRLIMYYPQEV------GRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCce--eeEEEEECCCCEEEEEEEcCCCC------CCCHHHHHHHHHH
Confidence 6652 4 79999999999998876542111 2356777777654
No 137
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.60 E-value=3.8e-08 Score=58.38 Aligned_cols=59 Identities=15% Similarity=0.356 Sum_probs=40.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC---CCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ---DPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~---~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+..|+++||++|++..+.+.+. ...|..+|++.+.... ...+++.+ +|++++. |+. +.|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~~~~--vP~~~~~---~~~---~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLGQRG--VPVIVIG---HKI---IVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhCCCc--ccEEEEC---CEE---Eee
Confidence 5679999999999998887542 2356778887643211 12578888 9998763 554 567
No 138
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.55 E-value=2.5e-07 Score=66.85 Aligned_cols=86 Identities=10% Similarity=0.200 Sum_probs=63.5
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC----------CCCCCCCCCCCCCccceEEEECCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD----------EEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~----------~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
..++.=|++|+.+.|++|+.+.|.+......+.. ..+.|++|.. +.+...++++.. +|++++++++
T Consensus 118 la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~--~Pal~Lv~~~ 193 (215)
T PF13728_consen 118 LAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV--TPALFLVNPN 193 (215)
T ss_pred HhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc--CCEEEEEECC
Confidence 4477889999999999999999999887766643 3355666642 112223789988 9999999998
Q ss_pred C-ceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 114 G-EPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 114 G-~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
+ +..--..| ..+.++|.+.+
T Consensus 194 ~~~~~pv~~G----------~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TKKWYPVSQG----------FMSLDELEDRI 214 (215)
T ss_pred CCeEEEEeee----------cCCHHHHHHhh
Confidence 7 44444567 88888887653
No 139
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.55 E-value=1.9e-07 Score=65.84 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh
Q psy17681 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE 76 (148)
Q Consensus 41 ~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~ 76 (148)
.+.-+||+++|.|||+||++|++ .+.+.++.+.+.
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~ 54 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWA 54 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHh
Confidence 33456999999999999999975 556665555544
No 140
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.55 E-value=2.9e-07 Score=66.52 Aligned_cols=96 Identities=9% Similarity=0.124 Sum_probs=63.3
Q ss_pred cCCCEEE-EEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC------------C-CC-------------CC
Q psy17681 45 SGKPLMV-LIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE------------P-QD-------------PK 96 (148)
Q Consensus 45 ~~k~vli-~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~------------~-~~-------------~~ 96 (148)
+||+++| +|+++||+.|....+.+.+.....+.. ..++.+++|.... . .. ..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 5887765 788999999999988888766554432 2456677664211 0 00 05
Q ss_pred CCCC-----CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 97 YAPD-----GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 97 ~~v~-----~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
|++. +...|+++++|++|.+.....+..+. -++.+++++.++..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~------gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEI------GRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCC------CCCHHHHHHHHHHh
Confidence 5542 11279999999999999887663221 24678888777653
No 141
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.54 E-value=4.6e-08 Score=64.14 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=47.6
Q ss_pred eHHHHHHHHHhcCCCEEEEEeC-------CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC----CCC--C--CCCCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHK-------SYCAACHELSPKFAASPEIAELAPKFEMVNISDD----EEP--Q--DPKYA 98 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a-------~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~----~~~--~--~~~~~ 98 (148)
.+.+.++...+++++++|.|++ +|||.|+.-.|.+.+.-.....+..+|.+.|... ++. - ...++
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~ 86 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLK 86 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC-
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceee
Confidence 4556666656778999999996 6999999999999764433223335666776542 111 1 11688
Q ss_pred CCCCccceEEEECCCCc
Q psy17681 99 PDGDYVPRILYFGPQGE 115 (148)
Q Consensus 99 v~~~~~Pt~~~~~~~G~ 115 (148)
+.+ +||++-++..++
T Consensus 87 l~~--IPTLi~~~~~~r 101 (119)
T PF06110_consen 87 LKG--IPTLIRWETGER 101 (119)
T ss_dssp --S--SSEEEECTSS-E
T ss_pred eee--cceEEEECCCCc
Confidence 999 999999985433
No 142
>PRK13189 peroxiredoxin; Provisional
Probab=98.52 E-value=3.5e-07 Score=66.45 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=59.2
Q ss_pred cCCCE-EEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC------------C-C-------------CCC
Q psy17681 45 SGKPL-MVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE------------P-Q-------------DPK 96 (148)
Q Consensus 45 ~~k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~------------~-~-------------~~~ 96 (148)
.||++ |++|+++||+.|....+.+.+.....+.. ..++.+++|.... . . ...
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 58855 45778999999999888887765544422 2445566664110 0 0 005
Q ss_pred CCCCC-----CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 97 YAPDG-----DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 97 ~~v~~-----~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
|++.. ...|+++++|++|.+.....+... .-.+.+++++.++.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~------~gr~~~eilr~l~a 161 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQE------VGRNMDEILRLVKA 161 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCC------CCCCHHHHHHHHHH
Confidence 56531 127999999999999887765211 12346677766654
No 143
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.50 E-value=3.8e-07 Score=67.62 Aligned_cols=96 Identities=11% Similarity=0.054 Sum_probs=62.3
Q ss_pred cCCCEEEEEe-CCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCC-------C--------CCC------------CC
Q psy17681 45 SGKPLMVLIH-KSYCAACHELSPKFAASPEIAELA-PKFEMVNISDD-------E--------EPQ------------DP 95 (148)
Q Consensus 45 ~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~-------~--------~~~------------~~ 95 (148)
.||+++++|| ++||+.|....+.+.+.....+.. -.++.+++|.. + ... ..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 5788888888 899999999988887665554432 24455666641 0 000 01
Q ss_pred CCCCC---CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 96 KYAPD---GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 96 ~~~v~---~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
.|++. +...|+++++|++|++++....... .-.+.+++++.++..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~------~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLG------LGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCC------CCCCHHHHHHHHHHh
Confidence 66653 1128999999999999987643111 134688888777643
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.49 E-value=3e-07 Score=56.20 Aligned_cols=58 Identities=24% Similarity=0.503 Sum_probs=38.4
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC------CCCCCCCCCccceEEEECCCCce
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ------DPKYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~------~~~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
++.|+++|||+|++..+.+.+.. ....|..++++.++... ...+++.. +|++ ++ +|+.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~----i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~--vP~v-~i--~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN----VKPAYEVVELDQLSNGSEIQDYLEEITGQRT--VPNI-FI--NGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC----CCCCCEEEEeeCCCChHHHHHHHHHHhCCCC--CCeE-EE--CCEE
Confidence 47899999999999999997754 22236566666543221 11457777 9996 45 4553
No 145
>KOG3425|consensus
Probab=98.47 E-value=6.3e-07 Score=58.04 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=53.9
Q ss_pred eHHHHHHHHHhcCCCEEEEEeC--------CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCC------CCCCCCCCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHK--------SYCAACHELSPKFAASPEIAELAPKFEMVNISDDE------EPQDPKYAP 99 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a--------~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~------~~~~~~~~v 99 (148)
.+++.++... +|+.++|.|++ ||||.|.+-.|.+.+.-+.....-+||.+++.... .+.+...++
T Consensus 14 ~~~~~~~~~~-n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~ 92 (128)
T KOG3425|consen 14 SFEETLKNVE-NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI 92 (128)
T ss_pred HHHHHHHHHh-CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence 5666666543 45569999986 79999999999998765544555578888887531 112223444
Q ss_pred -CCCccceEEEECCCCc
Q psy17681 100 -DGDYVPRILYFGPQGE 115 (148)
Q Consensus 100 -~~~~~Pt~~~~~~~G~ 115 (148)
.+ +||++=.+..++
T Consensus 93 lt~--vPTLlrw~~~~~ 107 (128)
T KOG3425|consen 93 LTA--VPTLLRWKRQPQ 107 (128)
T ss_pred eee--cceeeEEcCccc
Confidence 77 999988874333
No 146
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.44 E-value=5.6e-07 Score=64.46 Aligned_cols=94 Identities=11% Similarity=0.082 Sum_probs=59.6
Q ss_pred C-CCE-EEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCC--------------CCC------------CCC
Q psy17681 46 G-KPL-MVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDE--------------EPQ------------DPK 96 (148)
Q Consensus 46 ~-k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~--------------~~~------------~~~ 96 (148)
| |++ |++||++|||.|....+.+.+.....+.. ..++.+++|... ... ...
T Consensus 24 g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 24 GDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 5 554 56899999999999999888776655432 255667766411 000 005
Q ss_pred CCCC----C--CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 97 YAPD----G--DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 97 ~~v~----~--~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
|++. + ...|+++++|++|++.....|.... -.+.+++++.+++
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~------gr~~~ell~~l~~ 152 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATT------GRNFDEILRVVDA 152 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEEEEEecCCCC------CCCHHHHHHHHHH
Confidence 5553 1 0146799999999999887763221 2346677766654
No 147
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.42 E-value=2.7e-06 Score=62.86 Aligned_cols=90 Identities=8% Similarity=0.128 Sum_probs=66.5
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC----------CCCCCCCCCCCccceEEEECCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE----------PQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~----------~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
..++.=|++||.+.|++|+++.|.+......+.. ..+.|++|..-. +...++++.. +|++++++++
T Consensus 148 la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~Pal~Lv~~~ 223 (256)
T TIGR02739 148 LSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY--FPALYLVNPK 223 (256)
T ss_pred HHhceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCcc--CceEEEEECC
Confidence 3466889999999999999999999877655543 345577775311 1122788888 9999999998
Q ss_pred -CceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 114 -GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 114 -G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++..--..| ..+.++|.+.+..+.
T Consensus 224 t~~~~pv~~G----------~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 224 SQKMSPLAYG----------FISQDELKERILNVL 248 (256)
T ss_pred CCcEEEEeec----------cCCHHHHHHHHHHHH
Confidence 444444566 999999998887654
No 148
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.41 E-value=8.6e-07 Score=59.10 Aligned_cols=89 Identities=9% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCEEEEEeC--CCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 46 GKPLMVLIHK--SYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a--~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+...++.|-. .-+|-+....-.+.++...+... -.++.+|+|.+ +....+|+|.+ +||+++|. +|+.+.++.|
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA~~fgV~s--iPTLl~Fk-dGk~v~~i~G 109 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIGDRFGVFR--FPATLVFT-GGNYRGVLNG 109 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHHHHcCCcc--CCEEEEEE-CCEEEEEEeC
Confidence 4455555554 44566666666676666555422 24677777763 44555999999 99999998 9999999999
Q ss_pred CCCccccccccCChhHHHHHHHhhhC
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
..+.+++.+.+++.+.
T Consensus 110 ----------~~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 110 ----------IHPWAELINLMRGLVE 125 (132)
T ss_pred ----------cCCHHHHHHHHHHHhc
Confidence 8999999999998763
No 149
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.40 E-value=8.2e-07 Score=63.40 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHhcCCCEEEEEeC-CCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCC---------------CC---------C-
Q psy17681 42 AKTSGKPLMVLIHK-SYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEE---------------PQ---------D- 94 (148)
Q Consensus 42 a~~~~k~vli~f~a-~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~---------------~~---------~- 94 (148)
+...||+++|+||+ +||+.|....+.+.+........ -.++.|++|.... .. .
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 33468999999995 88999988877776665554432 2556677664210 00 0
Q ss_pred --CCCCCC----CCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 95 --PKYAPD----GDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 95 --~~~~v~----~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..|++. +-.+|+++++|++|+++....+... .-.+.+++++.|+..
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~------~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMP------VGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCC------CCCCHHHHHHHHHhh
Confidence 055653 1126899999999999988776322 123556677666543
No 150
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.35 E-value=2.8e-06 Score=62.50 Aligned_cols=89 Identities=7% Similarity=0.096 Sum_probs=65.8
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC----------CCCCCCCCCCCccceEEEECCCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE----------PQDPKYAPDGDYVPRILYFGPQG 114 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~----------~~~~~~~v~~~~~Pt~~~~~~~G 114 (148)
.++.=|++||.+.|++|+++.|.+......+.. ..+.|++|..-. +...++++.. +|++++++++.
T Consensus 142 a~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~PAl~Lv~~~t 217 (248)
T PRK13703 142 AEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY--FPALMLVDPKS 217 (248)
T ss_pred HhcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcc--cceEEEEECCC
Confidence 366889999999999999999999887666543 345577765211 1112688887 99999999885
Q ss_pred -ceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 115 -EPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 115 -~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+..--..| ..+.++|.+.+..+.
T Consensus 218 ~~~~pv~~G----------~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 218 GSVRPLSYG----------FITQDDLAKRFLNVS 241 (248)
T ss_pred CcEEEEeec----------cCCHHHHHHHHHHHH
Confidence 55544567 899999988877553
No 151
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.03 E-value=1.4e-05 Score=49.23 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=40.9
Q ss_pred EEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCC---CCCC--CCCCCCCccceEEEECCCCcee
Q psy17681 49 LMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEE---PQDP--KYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 49 vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~---~~~~--~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
-+..|+.+|||+|++..+.+.++.... ....|..+|++.+.. .... .+++.. +|+++ + +|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~~~~--vP~if-i--~g~~i 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKPVET--VPQIF-V--DQKHI 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCCCCc--CCEEE-E--CCEEE
Confidence 367899999999999999998865432 234667788886421 1111 223456 99964 4 46643
No 152
>KOG3414|consensus
Probab=97.96 E-value=3.9e-05 Score=50.23 Aligned_cols=99 Identities=9% Similarity=0.173 Sum_probs=71.6
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
.+.|.++|-|.-+|-|-|.+|+..+.+..+.-..-..+..+|+++ -+....-|++.. .|++++|- +++-+.-=.|+
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide-V~~~~~~~~l~~--p~tvmfFf-n~kHmkiD~gt 96 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE-VPDFVKMYELYD--PPTVMFFF-NNKHMKIDLGT 96 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch-hhhhhhhhcccC--CceEEEEE-cCceEEEeeCC
Confidence 458899999999999999999999876543332212223466663 233344788888 99998886 45544434677
Q ss_pred CCccccccccCChhHHHHHHHhh
Q psy17681 124 KSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
......+|.+.+.+++++-++.+
T Consensus 97 gdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 97 GDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred CCCceEEEEeccHHHHHHHHHHH
Confidence 77888999999999999888765
No 153
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.96 E-value=0.00012 Score=49.20 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=75.0
Q ss_pred eHHHHHHHH----HhcCCCEEEEEeCCCChhhhhh-hHhhcCchHHHhhcCCcEE--EecCCCCCCC-------------
Q psy17681 34 SLDAGLQAA----KTSGKPLMVLIHKSYCAACHEL-SPKFAASPEIAELAPKFEM--VNISDDEEPQ------------- 93 (148)
Q Consensus 34 ~~~~~~~~a----~~~~k~vli~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~v~--v~v~~~~~~~------------- 93 (148)
.+.++++.| +++.|+++|+.+.+.-+.+..+ +..+-+.....-.+.+||. -|+..++...
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~ 84 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSV 84 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhhhhHH
Confidence 467788888 9999999999999999877777 4444444444445568877 5666543210
Q ss_pred ----CCCCCCCCCccceEEEECCCC---ceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 94 ----DPKYAPDGDYVPRILYFGPQG---EPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 94 ----~~~~~v~~~~~Pt~~~~~~~G---~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
...++... +|.+.++-+.. .++.++.| ..+++++++.|.+|.+
T Consensus 85 a~~~~~~~~~~~--fP~~avI~~~~~~~~vl~~i~G----------~~~~~ell~~L~~~ve 134 (136)
T cd02990 85 AAQTIRNIKTDQ--LPAILIIMGKRSSNEVLNVIQG----------NTGVDELLMRLIEAME 134 (136)
T ss_pred HHHHHHhcCcCC--CCeEEEEEecCCceEEEEEEEC----------CCCHHHHHHHHHHHHh
Confidence 11455777 99998886554 57788999 9999999999998864
No 154
>KOG2507|consensus
Probab=97.85 E-value=0.00012 Score=57.03 Aligned_cols=104 Identities=16% Similarity=0.275 Sum_probs=77.9
Q ss_pred cce--eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchH-HHhhcCCcEEEecCCCCCCC---CCCCCCCCCcc
Q psy17681 31 NWK--SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPE-IAELAPKFEMVNISDDEEPQ---DPKYAPDGDYV 104 (148)
Q Consensus 31 ~~~--~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~-~~~~~~~~v~v~v~~~~~~~---~~~~~v~~~~~ 104 (148)
.|. ++.+++..++.+ |.+||.|-+..-....+|+........ .......||.|.+...+... ..-|.+.. +
T Consensus 2 lwfkGnipeAIa~aK~k-kalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~--v 78 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGK-KALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVS--V 78 (506)
T ss_pred cccccchHHHHHHhhcC-CeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhccccc--c
Confidence 466 788999887754 466777777777888888754444333 34455678888888654332 22677778 9
Q ss_pred ceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 105 PRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 105 Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
|..+|++.+|.++..+.| +...++|...+.+++
T Consensus 79 Ps~ffIg~sGtpLevitg----------~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 79 PSIFFIGFSGTPLEVITG----------FVTADELASSIEKVW 111 (506)
T ss_pred cceeeecCCCceeEEeec----------cccHHHHHHHHHHHH
Confidence 999999999999999999 999999998888763
No 155
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.81 E-value=0.00014 Score=48.14 Aligned_cols=107 Identities=8% Similarity=0.172 Sum_probs=67.5
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
..++++. ..++|.++|-|.-+|-|.|.+|+..+.+.+..-+.-.-+..+|+++ -+.....|.+.. .=|++||- +
T Consensus 10 ~VDqAI~--~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~-Vpdfn~~yel~d--P~tvmFF~-r 83 (133)
T PF02966_consen 10 HVDQAIL--SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE-VPDFNQMYELYD--PCTVMFFF-R 83 (133)
T ss_dssp HHHHHHH--H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT-THCCHHHTTS-S--SEEEEEEE-T
T ss_pred hHHHHHh--ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc-chhhhcccccCC--CeEEEEEe-c
Confidence 3455554 4679999999999999999999999976544322111223466663 122333666664 33455553 4
Q ss_pred CceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 114 GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 114 G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
++-+.-=.|+....-..|...+.+++++-++.+
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~i 116 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIETI 116 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHHH
Confidence 555554578777888999999999998887754
No 156
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.73 E-value=2e-05 Score=47.59 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=42.1
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCCCccccc
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYR 130 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~ 130 (148)
|.+++++|++|..+...+........ .++-.+++. +.+...+|++.+ +|++ ++ ||+.+. .|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~--~~~~~~~ygv~~--vPal-vI--ng~~~~--~G~------- 64 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE--DFEEIEKYGVMS--VPAL-VI--NGKVVF--VGR------- 64 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT--THHHHHHTT-SS--SSEE-EE--TTEEEE--ESS-------
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc--CHHHHHHcCCCC--CCEE-EE--CCEEEE--Eec-------
Confidence 33468889999988888765433331 222334442 222335999999 9998 55 477664 562
Q ss_pred cccCChhHHHHHH
Q psy17681 131 HYYYDVPSIVQAM 143 (148)
Q Consensus 131 ~~~~~~~~l~~~l 143 (148)
..+.++|.+.+
T Consensus 65 --~p~~~el~~~l 75 (76)
T PF13192_consen 65 --VPSKEELKELL 75 (76)
T ss_dssp ----HHHHHHHHH
T ss_pred --CCCHHHHHHHh
Confidence 34456665554
No 157
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.72 E-value=4.4e-05 Score=44.83 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=34.0
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC----CCCCCCCccceEEE
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP----KYAPDGDYVPRILY 109 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~----~~~v~~~~~Pt~~~ 109 (148)
++.|+++||++|+++...+.+. ...|..++++.+. .... ..+..+ +|++++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~-~~~~~~~~~~~~~~--vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDP-EALEELKKLNGYRS--VPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCH-HHHHHHHHHcCCcc--cCEEEE
Confidence 5778999999999988877542 2356667776532 1111 225667 999764
No 158
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.71 E-value=0.00011 Score=44.52 Aligned_cols=60 Identities=17% Similarity=0.346 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC--CCCCCCCCccceEEEECCCCce
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD--PKYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~--~~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
.+.-++.|+.+|||+|++....+.+ ....|..++++.+..... ...+... +|.++ + +|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~------~gi~y~~idi~~~~~~~~~~~~~g~~~--vP~i~-i--~g~~ 67 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE------KGYDFEEIPLGNDARGRSLRAVTGATT--VPQVF-I--GGKL 67 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH------cCCCcEEEECCCChHHHHHHHHHCCCC--cCeEE-E--CCEE
Confidence 4455778999999999999988853 234677788876422211 1346667 99974 4 4654
No 159
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.70 E-value=7.7e-05 Score=55.58 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=55.4
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+..|+|.||-+.++.|..|...+..++..+.. ..|+.+..... +....|...+ .||++++. +|.++..++|
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~~--~~~~~f~~~~--LPtllvYk-~G~l~~~~V~ 216 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASKC--PASENFPDKN--LPTLLVYK-NGDLIGNFVG 216 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECGC--CTTTTS-TTC---SEEEEEE-TTEEEEEECT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhcc--CcccCCcccC--CCEEEEEE-CCEEEEeEEe
Confidence 34799999999999999999999888776653 57888877642 2556899999 99999998 9999999988
No 160
>KOG0913|consensus
Probab=97.69 E-value=1.6e-05 Score=57.42 Aligned_cols=83 Identities=14% Similarity=0.275 Sum_probs=60.5
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCCC
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKS 125 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~ 125 (148)
--.+|.|+|+|||.|+...+.+...+.....- .+.-.+|+.. ++...-+|-+.. .||++=.. ||.-. ++.|
T Consensus 40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~-npgLsGRF~vta--LptIYHvk-DGeFr-rysg--- 111 (248)
T KOG0913|consen 40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT-NPGLSGRFLVTA--LPTIYHVK-DGEFR-RYSG--- 111 (248)
T ss_pred hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe-ccccceeeEEEe--cceEEEee-ccccc-cccC---
Confidence 36789999999999999999998876654432 2445577776 355556999999 99998886 88744 4678
Q ss_pred ccccccccCChhHHHHHHH
Q psy17681 126 PQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 126 ~~~~~~~~~~~~~l~~~l~ 144 (148)
.+|.+.++++++
T Consensus 112 -------aRdk~dfisf~~ 123 (248)
T KOG0913|consen 112 -------ARDKNDFISFEE 123 (248)
T ss_pred -------cccchhHHHHHH
Confidence 555666655543
No 161
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.67 E-value=4.8e-05 Score=46.10 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=36.0
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC------CCCCCCCCCCccceEEEECCCCce
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP------QDPKYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~------~~~~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
++.|+++|||+|+...+.+.+... .|..++++.++.. .....+... +|++ ++ +|+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~--~P~v-~~--~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRT--VPNV-FI--GGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCC--CCeE-EE--CCEE
Confidence 478899999999999999876432 4544555543221 111446677 9996 55 4554
No 162
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.66 E-value=2.2e-05 Score=45.03 Aligned_cols=52 Identities=21% Similarity=0.418 Sum_probs=35.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEE
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILY 109 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~ 109 (148)
++.|+.+|||+|++....+.+ ....|-.+|++.+...... ..+..+ +|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~------~~i~y~~~dv~~~~~~~~~l~~~~g~~~--~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE------KGIPYEEVDVDEDEEAREELKELSGVRT--VPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH------TTBEEEEEEGGGSHHHHHHHHHHHSSSS--SSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH------cCCeeeEcccccchhHHHHHHHHcCCCc--cCEEEE
Confidence 467899999999999988833 2245777888875311111 337778 999765
No 163
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.64 E-value=3.9e-05 Score=56.74 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=29.0
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
.+|++| +|++++.|.+|++. .+.| +.+.++|.+.+.
T Consensus 214 ~lGv~G--TPaiv~~d~~G~~~-~v~G----------~~~~~~L~~~l~ 249 (251)
T PRK11657 214 DLGANA--TPAIYYMDKDGTLQ-QVVG----------LPDPAQLAEIMG 249 (251)
T ss_pred HcCCCC--CCEEEEECCCCCEE-EecC----------CCCHHHHHHHhC
Confidence 688999 99999999888643 3579 888888887764
No 164
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.62 E-value=4.4e-05 Score=55.84 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++++++ +|++++- ||+.+ .| +.+.++|.+.++++.
T Consensus 197 ~lgi~g--TPtiv~~--~G~~~---~G----------~~~~~~L~~~l~~~~ 231 (232)
T PRK10877 197 QFGVQG--TPAIVLS--NGTLV---PG----------YQGPKEMKAFLDEHQ 231 (232)
T ss_pred HcCCcc--ccEEEEc--CCeEe---eC----------CCCHHHHHHHHHHcc
Confidence 788999 9998843 68765 69 889999999988764
No 165
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.57 E-value=7.9e-05 Score=43.46 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=37.2
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEEECCCCcee
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
++.|+++|||+|+.....+.+.. ..|..+|++.+...... ..+... +|+++ + +|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~--~P~~~-~--~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPT--VPQIF-I--NGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCC--cCEEE-E--CCEEE
Confidence 56788999999999999887543 46677888764321111 234456 88763 3 46544
No 166
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.52 E-value=0.00021 Score=50.75 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=23.3
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~ 70 (148)
..++..++.|+-+.||+|+++.+.+..
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh
Confidence 347899999999999999999888764
No 167
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.44 E-value=0.00028 Score=44.83 Aligned_cols=53 Identities=19% Similarity=0.402 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC--C----CCCCCCCccceEEEEC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD--P----KYAPDGDYVPRILYFG 111 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~--~----~~~v~~~~~Pt~~~~~ 111 (148)
++.|..+|||+|++....+.+. ...|-.+|++.+..... . ..+... +|.+ |++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~t--vP~V-fi~ 68 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPA--VPAV-FVG 68 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCC--cCeE-EEC
Confidence 6778899999999998877542 34566788876422111 1 224556 9996 664
No 168
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.44 E-value=0.00022 Score=44.00 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=35.3
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC---CCCCCC--CCCCccceEEEEC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP---QDPKYA--PDGDYVPRILYFG 111 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~---~~~~~~--v~~~~~Pt~~~~~ 111 (148)
++.|+.+|||+|++....+.+..... ....|..+|++.+... .....+ ... +|++ +++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-~~i~~~~idi~~~~~~~~~l~~~~g~~~~t--VP~i-fi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-ADFEFRYIDIHAEGISKADLEKTVGKPVET--VPQI-FVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-CCCcEEEEECCCCHHHHHHHHHHhCCCCCC--cCeE-EEC
Confidence 57788999999999998886643211 1234666777753211 111333 356 9997 554
No 169
>PHA03050 glutaredoxin; Provisional
Probab=97.42 E-value=0.00034 Score=45.16 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=37.6
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC--CC----CCCCCCCccceEEEECCCCcee
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ--DP----KYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~--~~----~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
++.|..+|||+|++....+.+... ....|-.++++...... .. .-+... +|++ |++ |+.+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i---~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~t--VP~I-fI~--g~~i 80 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF---KRGAYEIVDIKEFKPENELRDYFEQITGGRT--VPRI-FFG--KTSI 80 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC---CcCCcEEEECCCCCCCHHHHHHHHHHcCCCC--cCEE-EEC--CEEE
Confidence 778999999999999888865321 11256678888532211 11 334456 9996 554 5543
No 170
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.001 Score=45.69 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=54.8
Q ss_pred HHHHHhcCCCEEEEEe-CCCChhhhhhhHhhcCchHHHh-hcCCcEEEecCCC-------------------CCC-CCCC
Q psy17681 39 LQAAKTSGKPLMVLIH-KSYCAACHELSPKFAASPEIAE-LAPKFEMVNISDD-------------------EEP-QDPK 96 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~-------------------~~~-~~~~ 96 (148)
+.++...||+|+++|| ..++|.|-...-.|.+...... .+...+.|+.|.. ... ....
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ 102 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEA 102 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHH
Confidence 3444556999999999 6999999888877776654443 2334455666651 110 1115
Q ss_pred CCCCC---C-------ccceEEEECCCCceeeeecC
Q psy17681 97 YAPDG---D-------YVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 97 ~~v~~---~-------~~Pt~~~~~~~G~~~~~~~G 122 (148)
|++-+ . -.++++++|++|.+......
T Consensus 103 ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~ 138 (157)
T COG1225 103 YGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRK 138 (157)
T ss_pred hCcccccccCccccccccceEEEECCCCeEEEEecC
Confidence 55522 0 17899999999999987744
No 171
>KOG0911|consensus
Probab=97.30 E-value=2e-05 Score=56.56 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=55.9
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~ 123 (148)
+++.+++.||++||..|.+|...+....... .+.+|+.++.+.- ++....+.+.+ .|++.++- .|+.+.+..|.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~-~eis~~~~v~~--vp~~~~~~-~~~~v~~l~~~ 89 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEF-PEISNLIAVEA--VPYFVFFF-LGEKVDRLSGA 89 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhh-hHHHHHHHHhc--Cceeeeee-cchhhhhhhcc
Confidence 7899999999999999999999988766555 3345555555542 23344888888 99998884 78888777773
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.29 E-value=0.00063 Score=55.75 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=53.5
Q ss_pred HHHHhcCCCEEE-EEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceee
Q psy17681 40 QAAKTSGKPLMV-LIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKS 118 (148)
Q Consensus 40 ~~a~~~~k~vli-~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~ 118 (148)
+..+.-++++-| .|.+++||+|......+........ +...-.+|+... ++..++|+|.+ +|++++ ||+.+.
T Consensus 469 ~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~-~~~~~~~~v~~--vP~~~i---~~~~~~ 541 (555)
T TIGR03143 469 EKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHF-PDLKDEYGIMS--VPAIVV---DDQQVY 541 (555)
T ss_pred HHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECccc-HHHHHhCCcee--cCEEEE---CCEEEE
Confidence 333444678755 5579999999987777654332221 223344665543 33444999999 999755 466554
Q ss_pred eecCCCCccccccccCChhHHHHHH
Q psy17681 119 QVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 119 ~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
.| -.+.+++++.+
T Consensus 542 --~G----------~~~~~~~~~~~ 554 (555)
T TIGR03143 542 --FG----------KKTIEEMLELI 554 (555)
T ss_pred --ee----------CCCHHHHHHhh
Confidence 58 56778877664
No 173
>KOG1672|consensus
Probab=97.24 E-value=0.00072 Score=47.70 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=60.5
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
..+..-|++.||-+.=..|+.|+..++.++...- ...|+.+++... +=...+.+|.. +|+++++. +|..+.+++|
T Consensus 81 ~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~-PFlv~kL~IkV--LP~v~l~k-~g~~~D~iVG 155 (211)
T KOG1672|consen 81 VKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKA-PFLVTKLNIKV--LPTVALFK-NGKTVDYVVG 155 (211)
T ss_pred hhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccC-ceeeeeeeeeE--eeeEEEEE-cCEEEEEEee
Confidence 3457789999999999999999999987765443 247888877752 33445889999 99999997 9999999999
No 174
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.20 E-value=0.0011 Score=53.78 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=51.5
Q ss_pred HhcCCCE-EEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeee
Q psy17681 43 KTSGKPL-MVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQ 119 (148)
Q Consensus 43 ~~~~k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~ 119 (148)
++-++|+ +-.|.+++||+|......+.+.+.. +.++ -.+|... .++...+|++.+ +|++++ ||+.+
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~---~~~i~~~~id~~~-~~~~~~~~~v~~--VP~~~i---~~~~~-- 180 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVL---NPNITHTMIDGAL-FQDEVEARNIMA--VPTVFL---NGEEF-- 180 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh---CCCceEEEEEchh-CHhHHHhcCCcc--cCEEEE---CCcEE--
Confidence 3445666 8889999999999887777554432 2333 2344333 233445999998 999865 45544
Q ss_pred ecCCCCccccccccCChhHHHHHHH
Q psy17681 120 VFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 120 ~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
+.| ..+.+++++.+.
T Consensus 181 ~~g----------~~~~~~~~~~~~ 195 (517)
T PRK15317 181 GQG----------RMTLEEILAKLD 195 (517)
T ss_pred Eec----------CCCHHHHHHHHh
Confidence 357 555666666655
No 175
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.20 E-value=0.00047 Score=42.14 Aligned_cols=52 Identities=17% Similarity=0.391 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC--CCCCCCCCccceEEE
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD--PKYAPDGDYVPRILY 109 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~--~~~~v~~~~~Pt~~~ 109 (148)
+..|..+|||+|++....+.+ ....|-.+|++.+..... ...+... +|++++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~--vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQ--LPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCC--cCEEEE
Confidence 567889999999999888843 234677788886432111 1335566 999854
No 176
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.19 E-value=0.00031 Score=42.40 Aligned_cols=52 Identities=19% Similarity=0.503 Sum_probs=34.7
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC----CCCCCCCccceEEEEC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP----KYAPDGDYVPRILYFG 111 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~----~~~v~~~~~Pt~~~~~ 111 (148)
+..|+.+|||+|++....+.+. ...|-.+|++.+. .... ..+... +|++ +++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~-~~~~~~~~~~g~~~--vP~i-~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDP-ALRDEMMQRSGRRT--VPQI-FIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCH-HHHHHHHHHhCCCC--cCEE-EEC
Confidence 3568899999999999988642 3466667777642 2211 235556 9996 554
No 177
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.13 E-value=0.00047 Score=40.97 Aligned_cols=55 Identities=16% Similarity=0.385 Sum_probs=35.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC----CCCCC-CCccceEEEECCCCce
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP----KYAPD-GDYVPRILYFGPQGEP 116 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~----~~~v~-~~~~Pt~~~~~~~G~~ 116 (148)
++.|+.+|||+|++....+.+. ...|-.++++.+ ..... ..+.. . +|++ +++ |+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~--vP~v-~i~--g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGD-PALREEMINRSGGRRT--VPQI-FIG--DVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCC-HHHHHHHHHHhCCCCc--cCEE-EEC--CEE
Confidence 5678899999999998888652 346667888764 22211 23444 5 9975 554 543
No 178
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.11 E-value=0.001 Score=39.41 Aligned_cols=56 Identities=18% Similarity=0.353 Sum_probs=36.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC--CCCCCCCCccceEEEECCCCce
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD--PKYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~--~~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
++.|..+|||+|.+....+.+ ....|..+|++.+..... ...+... +|.+ +++ |+.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~------~~i~~~~~~v~~~~~~~~~~~~~g~~~--vP~i-fi~--g~~ 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE------NGISYEEIPLGKDITGRSLRAVTGAMT--VPQV-FID--GEL 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH------cCCCcEEEECCCChhHHHHHHHhCCCC--cCeE-EEC--CEE
Confidence 567889999999999888863 234677788876431111 1235566 9996 664 553
No 179
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0049 Score=42.03 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=58.3
Q ss_pred HHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHh--hcCCcEEEecCCCCC-----CCCC--------CCCCC----
Q psy17681 40 QAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE--LAPKFEMVNISDDEE-----PQDP--------KYAPD---- 100 (148)
Q Consensus 40 ~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~v~v~v~~~~~-----~~~~--------~~~v~---- 100 (148)
..+.-+||++||.-.|+-|+.- |.++.++..++ ..+.|+.+.+-+++- ...+ .|+++
T Consensus 19 ~l~~~~GkVlLIVNtASkCGfT----pQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVtFp~f 94 (162)
T COG0386 19 SLSDYKGKVLLIVNTASKCGFT----PQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMF 94 (162)
T ss_pred cHHHhCCcEEEEEEcccccCCc----HhHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCceeeee
Confidence 3445669999999999999964 44444444432 123555554444211 1110 33332
Q ss_pred ------C-----------------------CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhhC
Q psy17681 101 ------G-----------------------DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148 (148)
Q Consensus 101 ------~-----------------------~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al~ 148 (148)
| .|==|=+++|.+|+++.|+.- -.+++++...++++|.
T Consensus 95 ~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p----------~t~P~d~~~~Ie~lL~ 161 (162)
T COG0386 95 SKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSP----------KTKPEDIELAIEKLLA 161 (162)
T ss_pred eEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCC----------CCChhhHHHHHHHHhc
Confidence 0 011245788999999999877 6778888888887763
No 180
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.06 E-value=0.00056 Score=40.61 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=34.5
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC--CCCCCCCccceEEEEC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP--KYAPDGDYVPRILYFG 111 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~--~~~v~~~~~Pt~~~~~ 111 (148)
..|+.++||+|++....+.+ ....|-.+|++.+...... ..+... +|++ +++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~--vP~v-~~~ 55 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQ--VPVI-VAD 55 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcc--cCEE-EEC
Confidence 56788999999999988854 2346777888764321111 335566 9996 443
No 181
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.05 E-value=0.00067 Score=40.33 Aligned_cols=53 Identities=17% Similarity=0.319 Sum_probs=34.9
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEEEC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILYFG 111 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~~ 111 (148)
++.|+.+|||+|++....+.+ ....|..+|++.+...... ..+... +|++ +++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~--vP~v-~i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSV--VPQI-FFN 58 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCC--cCEE-EEC
Confidence 567889999999999988865 2346777888764321111 234445 8886 554
No 182
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.03 E-value=0.0011 Score=41.97 Aligned_cols=60 Identities=20% Similarity=0.330 Sum_probs=37.1
Q ss_pred CCCEEEEEe----CCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEEECCCCce
Q psy17681 46 GKPLMVLIH----KSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 46 ~k~vli~f~----a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
+++|+|+-. ++|||+|++....+.+. ...|..+|++.+...... ..+... +|.+ |++ |+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~t--vP~v-fi~--g~~ 77 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPT--IPQL-YVK--GEF 77 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCC--CCEE-EEC--CEE
Confidence 556666654 39999999999888653 246777888754211111 234445 8885 564 553
No 183
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0013 Score=40.10 Aligned_cols=53 Identities=21% Similarity=0.464 Sum_probs=35.6
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC-C----CCCCCCCccceEEEEC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD-P----KYAPDGDYVPRILYFG 111 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~-~----~~~v~~~~~Pt~~~~~ 111 (148)
++.|..+|||+|++....+. +....|..++++.++.... + ..+... +|++ +++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~t--vP~I-~i~ 60 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRT--VPQI-FIG 60 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCC--cCEE-EEC
Confidence 56788899999999888876 2334677778777543222 1 225667 9985 454
No 184
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.91 E-value=0.0011 Score=41.18 Aligned_cols=59 Identities=17% Similarity=0.338 Sum_probs=37.5
Q ss_pred CCCEEEEEeC----CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC----CCCCCCCccceEEEECCCCce
Q psy17681 46 GKPLMVLIHK----SYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP----KYAPDGDYVPRILYFGPQGEP 116 (148)
Q Consensus 46 ~k~vli~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~----~~~v~~~~~Pt~~~~~~~G~~ 116 (148)
+++|+|+-.. +|||+|++....+.+. ...|..+|++.+. .... .-+... +|++ |++ |+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~-~~~~~l~~~~g~~t--vP~v-fi~--g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDE-EVRQGLKEYSNWPT--FPQL-YVN--GEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCH-HHHHHHHHHhCCCC--CCEE-EEC--CEE
Confidence 5677666543 7999999998888653 2467778877542 2111 234456 9996 664 553
No 185
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.76 E-value=0.0013 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.688 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCChhhhhhhHhh
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKF 68 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~ 68 (148)
+++-+|.|+...||||..+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccc
Confidence 78999999999999999998865
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.74 E-value=0.0051 Score=50.00 Aligned_cols=84 Identities=14% Similarity=0.283 Sum_probs=51.5
Q ss_pred HHHhcCCCE-EEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee
Q psy17681 41 AAKTSGKPL-MVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 41 ~a~~~~k~v-li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
..++-++|+ +-.|.++.||+|......+.+.... +.++ -.+|... .++...+|++.+ +|++++ ||+..
T Consensus 111 ~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~---~p~i~~~~id~~~-~~~~~~~~~v~~--VP~~~i---~~~~~ 181 (515)
T TIGR03140 111 RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL---NPNISHTMIDGAL-FQDEVEALGIQG--VPAVFL---NGEEF 181 (515)
T ss_pred HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh---CCCceEEEEEchh-CHHHHHhcCCcc--cCEEEE---CCcEE
Confidence 334445666 8889999999998776666543332 2333 2233332 233445999998 999865 45544
Q ss_pred eeecCCCCccccccccCChhHHHHHHHh
Q psy17681 118 SQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 118 ~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
..| -.+.+++++.+.+
T Consensus 182 --~~g----------~~~~~~~~~~l~~ 197 (515)
T TIGR03140 182 --HNG----------RMDLAELLEKLEE 197 (515)
T ss_pred --Eec----------CCCHHHHHHHHhh
Confidence 357 5566777666654
No 187
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=96.71 E-value=0.014 Score=42.05 Aligned_cols=101 Identities=13% Similarity=0.139 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCEEEEEeCCCChh-hhhhhHhhcCchHHH--hhcC--CcEEEecCCC--CCCCCC--------------
Q psy17681 37 AGLQAAKTSGKPLMVLIHKSYCAA-CHELSPKFAASPEIA--ELAP--KFEMVNISDD--EEPQDP-------------- 95 (148)
Q Consensus 37 ~~~~~a~~~~k~vli~f~a~wC~~-C~~~~~~~~~~~~~~--~~~~--~~v~v~v~~~--~~~~~~-------------- 95 (148)
+.+.....+||+++|+|.-+.||. |-.+...+......- .... +++.+.+|-+ .+....
T Consensus 58 ~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~l 137 (207)
T COG1999 58 KPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGL 137 (207)
T ss_pred CEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeee
Confidence 444444557999999999888875 766555444333221 2222 2355555531 110000
Q ss_pred ------------CCCCCC---------Cc----cceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 ------------KYAPDG---------DY----VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ------------~~~v~~---------~~----~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.|++.. .| ...++++|++|+....+.+ ....+.+++.++..+
T Consensus 138 tg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~----------~~~~~~i~~~l~~l~ 204 (207)
T COG1999 138 TGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY----------GEPPEEIAADLKKLL 204 (207)
T ss_pred eCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC----------CCChHHHHHHHHHHh
Confidence 222210 11 5577899999999988877 556889998888765
No 188
>PRK10638 glutaredoxin 3; Provisional
Probab=96.68 E-value=0.0023 Score=39.06 Aligned_cols=57 Identities=18% Similarity=0.429 Sum_probs=36.3
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCC---CCCCCCCCccceEEEECCCCcee
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD---PKYAPDGDYVPRILYFGPQGEPK 117 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~---~~~~v~~~~~Pt~~~~~~~G~~~ 117 (148)
+..|..+|||+|++....+.+. ...|..+|++.+..... ...+... +|++ ++ +|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~--vP~i-~~--~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTT--VPQI-FI--DAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCC--cCEE-EE--CCEEE
Confidence 5577789999999998888642 34677788875421111 1334455 9976 44 46544
No 189
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.63 E-value=0.0011 Score=42.42 Aligned_cols=83 Identities=12% Similarity=0.196 Sum_probs=51.3
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCC---CCCCCCCCCCccceEEEE
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEP---QDPKYAPDGDYVPRILYF 110 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~---~~~~~~v~~~~~Pt~~~~ 110 (148)
++++.++.+ .++|++|+=+++.||-.......|++..........+..+++-...+- ..++|+|. +.-|.++++
T Consensus 9 ql~~i~~~S--~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~-HeSPQ~ili 85 (105)
T PF11009_consen 9 QLEEILEES--KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK-HESPQVILI 85 (105)
T ss_dssp HHHHHHHH-----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEE
T ss_pred HHHHHHHhc--ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-cCCCcEEEE
Confidence 455555543 388999999999999999988888765544443346677887763211 12388996 339999999
Q ss_pred CCCCceeeee
Q psy17681 111 GPQGEPKSQV 120 (148)
Q Consensus 111 ~~~G~~~~~~ 120 (148)
. ||+.++..
T Consensus 86 ~-~g~~v~~a 94 (105)
T PF11009_consen 86 K-NGKVVWHA 94 (105)
T ss_dssp E-TTEEEEEE
T ss_pred E-CCEEEEEC
Confidence 8 99988753
No 190
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.46 E-value=0.0029 Score=42.43 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.2
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCc
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAAS 71 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~ 71 (148)
++++.++.|+.++||+|+.+.+.+.+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~ 30 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKL 30 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHH
Confidence 467889999999999999998887653
No 191
>PRK10824 glutaredoxin-4; Provisional
Probab=96.22 E-value=0.0072 Score=39.45 Aligned_cols=38 Identities=16% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCEEEEEeC----CCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 46 GKPLMVLIHK----SYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 46 ~k~vli~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
.++|+|+--. ||||+|++....+.+. ...|-.+|++.+
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d 55 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQN 55 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCC
Confidence 5666666554 6999999998888653 245656777754
No 192
>KOG1752|consensus
Probab=96.19 E-value=0.011 Score=37.93 Aligned_cols=34 Identities=26% Similarity=0.552 Sum_probs=24.0
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
+|.|.-+||++|+.....+.+ .......+.+|.+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~------~~v~~~vvELD~~ 49 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD------LGVNPKVVELDED 49 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh------CCCCCEEEEccCC
Confidence 456888999999997777755 3345555666654
No 193
>PTZ00062 glutaredoxin; Provisional
Probab=96.18 E-value=0.011 Score=42.56 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCEEEEEe----CCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 35 LDAGLQAAKTSGKPLMVLIH----KSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 35 ~~~~~~~a~~~~k~vli~f~----a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
..+.++...+ .++|+|+-- +||||+|++....+.+. ...|..+|++.+
T Consensus 102 ~~~~v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~------~i~y~~~DI~~d 153 (204)
T PTZ00062 102 TVEKIERLIR-NHKILLFMKGSKTFPFCRFSNAVVNMLNSS------GVKYETYNIFED 153 (204)
T ss_pred HHHHHHHHHh-cCCEEEEEccCCCCCCChhHHHHHHHHHHc------CCCEEEEEcCCC
Confidence 3344444333 456666554 37999999998888642 346777888864
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.02 E-value=0.0038 Score=38.18 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEeCCCChhhhhhhHhhcCch
Q psy17681 50 MVLIHKSYCAACHELSPKFAASP 72 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~ 72 (148)
+..|+.+.||+|..+.+.+.+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~ 23 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL 23 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH
Confidence 46799999999999999887654
No 195
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.93 E-value=0.0046 Score=37.64 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=46.2
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCce-eeeecCCCCccc
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEP-KSQVFNAKSPQV 128 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~-~~~~~G~~~~~~ 128 (148)
++.|+.+.|+-|......+........ -.+..+|++.+ +....+|+.. +|.+.+-+..+.. .....+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~d-~~l~~~Y~~~---IPVl~~~~~~~~~~~~~~~~------ 69 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDED-PELFEKYGYR---IPVLHIDGIRQFKEQEELKW------ 69 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTTT-HHHHHHSCTS---TSEEEETT-GGGCTSEEEES------
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCCC-HHHHHHhcCC---CCEEEEcCcccccccceeCC------
Confidence 678899999999999888764221111 12355888853 3334588864 9996554422111 112223
Q ss_pred cccccCChhHHHHHHH
Q psy17681 129 YRHYYYDVPSIVQAMK 144 (148)
Q Consensus 129 ~~~~~~~~~~l~~~l~ 144 (148)
..+.+.|.++++
T Consensus 70 ----~~d~~~L~~~L~ 81 (81)
T PF05768_consen 70 ----RFDEEQLRAWLE 81 (81)
T ss_dssp ----SB-HHHHHHHHH
T ss_pred ----CCCHHHHHHHhC
Confidence 777888888765
No 196
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=95.86 E-value=0.016 Score=46.02 Aligned_cols=34 Identities=24% Similarity=0.481 Sum_probs=27.0
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
++.|..+|||+|++....+.+. ...|..+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~ 37 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDD 37 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCC
Confidence 6789999999999998888652 356777888854
No 197
>KOG2603|consensus
Probab=95.55 E-value=0.037 Score=41.93 Aligned_cols=92 Identities=18% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCCEEEEEeC----CCChhhhhhhHhhcCchHHHhhcC---C-----cEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 46 GKPLMVLIHK----SYCAACHELSPKFAASPEIAELAP---K-----FEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 46 ~k~vli~f~a----~wC~~C~~~~~~~~~~~~~~~~~~---~-----~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
+=.+++.|.| .-|.-|+...+++...++....+. + |-.||.++. +..-..++... .|+++++.|.
T Consensus 60 Nys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~~Fq~l~ln~--~P~l~~f~P~ 136 (331)
T KOG2603|consen 60 NYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQVFQQLNLNN--VPHLVLFSPA 136 (331)
T ss_pred CeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HHHHHHhcccC--CCeEEEeCCC
Confidence 4456788887 689999999988887766544332 2 233655541 22223788988 9999999666
Q ss_pred -CceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 114 -GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 114 -G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
|++.. ...-+.+++.+. .|+++++++.
T Consensus 137 ~~n~~~----s~~~d~~~~g~~-Ae~iaqfv~~ 164 (331)
T KOG2603|consen 137 KGNKKR----SDQMDQQDLGFE-AEQIAQFVAD 164 (331)
T ss_pred cccccc----Cccchhhhcchh-HHHHHHHHHH
Confidence 55551 112233444444 7777776654
No 198
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.41 E-value=0.029 Score=41.02 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=37.2
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
+.++|++++|.+-.||+=+.-.+.+.+..+.+....+|+.|.+.+.
T Consensus 100 ~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EA 145 (237)
T PF00837_consen 100 KGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEA 145 (237)
T ss_pred cCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhh
Confidence 5689999999999999998878888777777766667877776663
No 199
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.37 E-value=0.027 Score=38.94 Aligned_cols=94 Identities=14% Similarity=0.113 Sum_probs=58.3
Q ss_pred HHHhcCCC-EEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee-e
Q psy17681 41 AAKTSGKP-LMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK-S 118 (148)
Q Consensus 41 ~a~~~~k~-vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~-~ 118 (148)
.....+++ +++.|..........+...+.+.+...+..-.|+.+|.+.. ......+++.....|++++++.+.... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~-~~~~~~~~i~~~~~P~~vi~~~~~~~~~~ 167 (184)
T PF13848_consen 89 KLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF-PRLLKYFGIDEDDLPALVIFDSNKGKYYY 167 (184)
T ss_dssp HHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT-HHHHHHTTTTTSSSSEEEEEETTTSEEEE
T ss_pred HHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh-HHHHHHcCCCCccCCEEEEEECCCCcEEc
Confidence 33445656 77778777777777777777665544444335566666632 223337888733499999999665443 2
Q ss_pred eecCCCCccccccccCChhHHHHHHHh
Q psy17681 119 QVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 119 ~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
...| ..+.+.|.++++.
T Consensus 168 ~~~~----------~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 168 LPEG----------EITPESIEKFLND 184 (184)
T ss_dssp --SS----------CGCHHHHHHHHHH
T ss_pred CCCC----------CCCHHHHHHHhcC
Confidence 2345 6677888877753
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.14 E-value=0.18 Score=41.52 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc--EEEecCCCCCCCCCCCCCCCCccceEEEECCCCcee-eeecC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK-SQVFN 122 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~-~~~~G 122 (148)
+...++.|+.+.|..|.++...+++... .++.+ ...|... +.....+|++.. .|++.+++.+|+.. -++.|
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~---~s~~i~~~~~~~~~-~~~~~~~~~v~~--~P~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS---LSEKLNSEAVNRGE-EPESETLPKITK--LPTVALLDDDGNYTGLKFHG 439 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh---cCCcEEEEEecccc-chhhHhhcCCCc--CCEEEEEeCCCcccceEEEe
Confidence 4445777888899999999888865443 33332 2233332 223345899988 99999997676532 55677
Q ss_pred CCCccccccccCChhHHHHHHHhhh
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
-....++...+...+
T Consensus 440 ----------~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 440 ----------VPSGHELNSFILALY 454 (555)
T ss_pred ----------cCccHhHHHHHHHHH
Confidence 666777766666543
No 201
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.12 E-value=0.017 Score=39.86 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=24.6
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchH
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPE 73 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~ 73 (148)
.+++.++.|+...||+|+.+.+.+.....
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~ 42 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVK 42 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHH
Confidence 58899999999999999999888765433
No 202
>KOG2640|consensus
Probab=95.09 E-value=0.014 Score=44.17 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=58.6
Q ss_pred hcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC--CCCCCCCCCCCCCCccceEEEECCCCceeeeec
Q psy17681 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD--DEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~--~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~ 121 (148)
++..++=+.||++|||..+..+|.+.-.+.....-.++. +++ ..+.....|++++ .|+..+.++.-...+ .
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~~~~--~ps~~~~n~t~~~~~--~ 146 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYGIHS--EPSNLMLNQTCPASY--R 146 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhcccccc--CCcceeeccccchhh--c
Confidence 557799999999999999999999876655544222332 232 2234455899999 999999987666554 5
Q ss_pred CCCCccccccccCChhHHHHHHHhh
Q psy17681 122 NAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 122 G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
| ..+...|.+...++
T Consensus 147 ~----------~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 147 G----------ERDLASLVNFYTEI 161 (319)
T ss_pred c----------cccHHHHHHHHHhh
Confidence 6 45555665555443
No 203
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.49 E-value=0.037 Score=37.47 Aligned_cols=31 Identities=6% Similarity=0.128 Sum_probs=23.7
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHH
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIA 75 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~ 75 (148)
..+++++.|+..-||+|..+.+.+...-..+
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhc
Confidence 3678899999999999999988887443333
No 204
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=94.34 E-value=0.1 Score=36.44 Aligned_cols=46 Identities=13% Similarity=0.301 Sum_probs=29.2
Q ss_pred HhcCCCEEEEEeCCCCh-hhhhhhHhhcCchHHHhh-cC--CcEEEecCC
Q psy17681 43 KTSGKPLMVLIHKSYCA-ACHELSPKFAASPEIAEL-AP--KFEMVNISD 88 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~-~C~~~~~~~~~~~~~~~~-~~--~~v~v~v~~ 88 (148)
.-+||+++|.|.-+.|| .|-.+...+.+....... .. +++.|.+|-
T Consensus 49 ~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 49 DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 34699999999999995 686665555554443222 22 557777774
No 205
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=94.32 E-value=0.059 Score=35.85 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=55.0
Q ss_pred CCEEEEEeCCC---Chh-hh-hhhHhhcCchHHHhhc-CCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeee-
Q psy17681 47 KPLMVLIHKSY---CAA-CH-ELSPKFAASPEIAELA-PKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQ- 119 (148)
Q Consensus 47 k~vli~f~a~w---C~~-C~-~~~~~~~~~~~~~~~~-~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~- 119 (148)
+.+-|...-|. |.. +. .....+.+.++.++.. -.|+.+|.++.. .....|++.+..+|++++++.++. .+.
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~-~~~~~fgl~~~~~P~v~i~~~~~~-KY~~ 97 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL-DLEEALNIGGFGYPAMVAINFRKM-KFAT 97 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH-HHHHHcCCCccCCCEEEEEecccC-cccc
Confidence 45544444543 222 32 2355566656566655 366778777643 244578885334999999998765 554
Q ss_pred ecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 120 VFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 120 ~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
..| ..+.+.+.+++++.+
T Consensus 98 ~~~----------~~t~e~i~~Fv~~~l 115 (130)
T cd02983 98 LKG----------SFSEDGINEFLRELS 115 (130)
T ss_pred ccC----------ccCHHHHHHHHHHHH
Confidence 556 566788888887754
No 206
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.27 E-value=0.075 Score=36.33 Aligned_cols=44 Identities=14% Similarity=0.341 Sum_probs=29.0
Q ss_pred cCCCEEEEEe-CCCChhhhhh-hHhhcCchHHHhhcC--CcEEEecCC
Q psy17681 45 SGKPLMVLIH-KSYCAACHEL-SPKFAASPEIAELAP--KFEMVNISD 88 (148)
Q Consensus 45 ~~k~vli~f~-a~wC~~C~~~-~~~~~~~~~~~~~~~--~~v~v~v~~ 88 (148)
.||+++|.|| +.|||.|... .+.+.+......... .++.+..|.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 4666666666 8999999987 887776655443222 255566654
No 207
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=93.71 E-value=0.11 Score=33.66 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred CCCEEEEEe-CCCC---hhhhhhhHhhcCchHHHh-hcCCcEEEecCCCCCCCCCCCCCCCCc--cceEEEECCCCceee
Q psy17681 46 GKPLMVLIH-KSYC---AACHELSPKFAASPEIAE-LAPKFEMVNISDDEEPQDPKYAPDGDY--VPRILYFGPQGEPKS 118 (148)
Q Consensus 46 ~k~vli~f~-a~wC---~~C~~~~~~~~~~~~~~~-~~~~~v~v~v~~~~~~~~~~~~v~~~~--~Pt~~~~~~~G~~~~ 118 (148)
.+++++.|+ .++- ..-......+.+.+...+ ..-.|+.+|.+.... ....|++.... .|++.+.+.++ ..+
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~-~l~~fgl~~~~~~~P~~~i~~~~~-~KY 91 (111)
T cd03073 14 KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSH-ELEEFGLDFSGGEKPVVAIRTAKG-KKY 91 (111)
T ss_pred cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHH-HHHHcCCCcccCCCCEEEEEeCCC-Ccc
Confidence 455655554 2222 223445666666666666 455677787775432 34478887545 99999998665 444
Q ss_pred eecCCCCccccccccC-ChhHHHHHHHh
Q psy17681 119 QVFNAKSPQVYRHYYY-DVPSIVQAMKS 145 (148)
Q Consensus 119 ~~~G~~~~~~~~~~~~-~~~~l~~~l~~ 145 (148)
...+ -. +.+.|.+++++
T Consensus 92 ~~~~----------~~~t~e~i~~F~~~ 109 (111)
T cd03073 92 VMEE----------EFSDVDALEEFLED 109 (111)
T ss_pred CCCc----------ccCCHHHHHHHHHH
Confidence 4444 33 67888888765
No 208
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.24 Score=29.70 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=36.0
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC------------CCCC---CCCCCCCCCCccceEEEE
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD------------DEEP---QDPKYAPDGDYVPRILYF 110 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~------------~~~~---~~~~~~v~~~~~Pt~~~~ 110 (148)
.|| +.|++.-||.|.....++.++ +.+|=.|++.. ++.+ +...++.-| +|.+..
T Consensus 2 skp--~lfgsn~Cpdca~a~eyl~rl------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiG--IPall~- 70 (85)
T COG4545 2 SKP--KLFGSNLCPDCAPAVEYLERL------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIG--IPALLT- 70 (85)
T ss_pred CCc--eeeccccCcchHHHHHHHHHc------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCccc--ceEEEe-
Confidence 356 679999999998877766543 23333344333 1111 122566667 998533
Q ss_pred CCCCceee
Q psy17681 111 GPQGEPKS 118 (148)
Q Consensus 111 ~~~G~~~~ 118 (148)
+||+++.
T Consensus 71 -~d~~vVl 77 (85)
T COG4545 71 -DDGKVVL 77 (85)
T ss_pred -CCCcEEE
Confidence 3787764
No 209
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=93.38 E-value=0.11 Score=40.13 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhh-----hhHhhcCchHHHhhcC--CcEEEecCCCCCCCCCCCCCCCCccce
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHE-----LSPKFAASPEIAELAP--KFEMVNISDDEEPQDPKYAPDGDYVPR 106 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~-----~~~~~~~~~~~~~~~~--~~v~v~v~~~~~~~~~~~~v~~~~~Pt 106 (148)
|++++++ +-+.++|+|+.|--..-.. |...+.++...--..+ .|..||..++ .....+.++.. .++
T Consensus 43 Nfk~~lK----kyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klAKKLgv~E--~~S 115 (383)
T PF01216_consen 43 NFKRALK----KYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLAKKLGVEE--EGS 115 (383)
T ss_dssp THHHHHH----H-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHHHHHT--S--TTE
T ss_pred HHHHHHH----hhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHHHhcCccc--cCc
Confidence 6666554 4678899999865332222 2233333333322233 5566877764 34445899999 999
Q ss_pred EEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 107 ILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 107 ~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
++++. +|+++. +.| ..+++.|.+++-..+
T Consensus 116 iyVfk-d~~~IE-ydG----------~~saDtLVeFl~dl~ 144 (383)
T PF01216_consen 116 IYVFK-DGEVIE-YDG----------ERSADTLVEFLLDLL 144 (383)
T ss_dssp EEEEE-TTEEEE-E-S------------SHHHHHHHHHHHH
T ss_pred EEEEE-CCcEEE-ecC----------ccCHHHHHHHHHHhc
Confidence 99997 888776 459 889999999887654
No 210
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=92.69 E-value=0.18 Score=32.53 Aligned_cols=90 Identities=13% Similarity=-0.015 Sum_probs=55.9
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHH---HhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeee-e
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEI---AELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQ-V 120 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~---~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~-~ 120 (148)
.+.|..+.|+ .-..-......+...+.. .++.-.|+.+|.+.... ....||+...-+|.+.+.+.++...+. .
T Consensus 15 ~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~-~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~ 91 (111)
T cd03072 15 EGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRH-PLLHLGKTPADLPVIAIDSFRHMYLFPDF 91 (111)
T ss_pred CCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhh-HHHHcCCCHhHCCEEEEEcchhcCcCCCC
Confidence 4666666666 111224456666666666 55555778888876543 444788875449999999865533443 4
Q ss_pred cCCCCccccccccCChhHHHHHHHhhh
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.+ ..+.+.|.+++++-+
T Consensus 92 ~~----------~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 92 ED----------VYVPGKLKQFVLDLH 108 (111)
T ss_pred cc----------ccCHHHHHHHHHHHh
Confidence 45 455778888877643
No 211
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=92.58 E-value=0.15 Score=29.75 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=15.4
Q ss_pred EEEeCCCChhhhhhhHhhcC
Q psy17681 51 VLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~ 70 (148)
+.|+.+||++|++..-.+..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~ 21 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL 21 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH
Confidence 35678999999988776643
No 212
>KOG3170|consensus
Probab=91.96 E-value=0.81 Score=32.85 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=59.9
Q ss_pred ccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEE
Q psy17681 30 INWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILY 109 (148)
Q Consensus 30 i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~ 109 (148)
|+-.++...+..|. +|-.|+|..|...-|-|.-+...+.+++..+.. ..||.+-.+. .+..|--.- .||+++
T Consensus 96 ISg~dyv~EVT~As-~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~----cIpNYPe~n--lPTl~V 167 (240)
T KOG3170|consen 96 ISGPDYVKEVTKAS-EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATT----CIPNYPESN--LPTLLV 167 (240)
T ss_pred ccchHHHHHHHhcc-CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccc----ccCCCcccC--CCeEEE
Confidence 34446666666543 577999999999999999999999887766543 3666643222 222344444 999988
Q ss_pred ECCCCceeeeecC
Q psy17681 110 FGPQGEPKSQVFN 122 (148)
Q Consensus 110 ~~~~G~~~~~~~G 122 (148)
+. .|.++.+++|
T Consensus 168 Y~-~G~lk~q~ig 179 (240)
T KOG3170|consen 168 YH-HGALKKQMIG 179 (240)
T ss_pred ee-cchHHhheeh
Confidence 86 8999988888
No 213
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.24 E-value=0.43 Score=30.20 Aligned_cols=33 Identities=6% Similarity=0.264 Sum_probs=24.8
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
..|+.++|+.|++....+.+. ...|..+|+..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccC
Confidence 468899999999998877542 346777887753
No 214
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.80 E-value=0.21 Score=37.00 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.6
Q ss_pred hcCCCEEEEEeCCCChhhhhhh
Q psy17681 44 TSGKPLMVLIHKSYCAACHELS 65 (148)
Q Consensus 44 ~~~k~vli~f~a~wC~~C~~~~ 65 (148)
..||+.+++..+.|||+|...+
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CCCeeEEEEEecccCccchhhH
Confidence 5699999999999999997764
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.26 E-value=0.55 Score=31.99 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=23.7
Q ss_pred EEEeCC------CChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 51 VLIHKS------YCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 51 i~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
+.|+++ +|++|++....+.+. ...|-.+|++.+
T Consensus 3 vlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~ 41 (147)
T cd03031 3 VLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMD 41 (147)
T ss_pred EEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCC
Confidence 455566 999999999888653 345666787753
No 216
>KOG3171|consensus
Probab=88.00 E-value=0.51 Score=34.21 Aligned_cols=81 Identities=14% Similarity=0.237 Sum_probs=54.8
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
.|-++++... +.-.++|.+|-+.-+-|..+...+.-++..+.. ..|+.+... ......+|...+ +|+++|+. +
T Consensus 148 qfld~idke~-ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss--~~gas~~F~~n~--lP~LliYk-g 220 (273)
T KOG3171|consen 148 QFLDTIDKEL-KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSS--NTGASDRFSLNV--LPTLLIYK-G 220 (273)
T ss_pred hHHHHHhccc-ceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeec--cccchhhhcccC--CceEEEee-C
Confidence 4555555321 234678889999999999998887666544432 356555433 334455899999 99999997 8
Q ss_pred Cceeeeec
Q psy17681 114 GEPKSQVF 121 (148)
Q Consensus 114 G~~~~~~~ 121 (148)
|+++..++
T Consensus 221 GeLIgNFv 228 (273)
T KOG3171|consen 221 GELIGNFV 228 (273)
T ss_pred CchhHHHH
Confidence 88875433
No 217
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=87.91 E-value=1.9 Score=26.34 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=45.8
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
...+++++|-|+.++|+. ....+.+.+...+. .+....+.. .....++.+. .|+++++.+..+....+.|
T Consensus 14 ~~~~~~~vvg~f~~~~~~---~~~~f~~~A~~~r~--~~~F~~~~~--~~~~~~~~~~---~~~i~l~~~~~~~~~~y~g 83 (97)
T cd02981 14 LDKDDVVVVGFFKDEESE---EYKTFEKVAESLRD--DYGFGHTSD--KEVAKKLKVK---PGSVVLFKPFEEEPVEYDG 83 (97)
T ss_pred hccCCeEEEEEECCCCcH---HHHHHHHHHHhccc--CCeEEEECh--HHHHHHcCCC---CCceEEeCCcccCCccCCC
Confidence 456889999999999984 34444443433322 233332232 1122234543 6777788654333344566
Q ss_pred CCCccccccccCChhHHHHHHHh
Q psy17681 123 AKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
..+.+.|.+++..
T Consensus 84 ----------~~~~~~l~~fi~~ 96 (97)
T cd02981 84 ----------EFTEESLVEFIKD 96 (97)
T ss_pred ----------CCCHHHHHHHHHh
Confidence 4446788777753
No 218
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.71 E-value=1 Score=28.98 Aligned_cols=57 Identities=12% Similarity=0.387 Sum_probs=34.3
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCC---CCCCCCCccceEEEECCCCc
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVPRILYFGPQGE 115 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~---~~~v~~~~~Pt~~~~~~~G~ 115 (148)
..|+.++|+.|++....+.+. ...|..+|+..+.....+ -.+..+ .|..-+++..|.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~el~~~~~~~~--~~~~~l~~~~~~ 61 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEEPPSKEELKKWLEKSG--LPLKKFFNTSGK 61 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCCcccHHHHHHHHHHcC--CCHHHHHhcCCc
Confidence 467889999999988887542 346777777764322211 222234 555556665555
No 219
>KOG2792|consensus
Probab=87.32 E-value=2.4 Score=31.61 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=22.8
Q ss_pred cceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
.=.++++||+|+.+.- .|. ..+.+++.+.+.+
T Consensus 242 Si~mYLidPeg~Fvd~-~Gr---------N~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 242 SIFMYLIDPEGEFVDY-YGR---------NYDADELADSILK 273 (280)
T ss_pred eEEEEEECCCcceehh-hcc---------cCCHHHHHHHHHH
Confidence 4567889999998864 453 5667777776653
No 220
>KOG1651|consensus
Probab=86.89 E-value=5.8 Score=27.63 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=19.8
Q ss_pred HHHHHhcCCCEEEEEeCCCChhhhh
Q psy17681 39 LQAAKTSGKPLMVLIHKSYCAACHE 63 (148)
Q Consensus 39 ~~~a~~~~k~vli~f~a~wC~~C~~ 63 (148)
+...+-.||++||.=-|+-|+.-..
T Consensus 27 v~l~~yrGkV~LiVNVAS~Cg~T~~ 51 (171)
T KOG1651|consen 27 VSLSQYRGKVVLIVNVASQCGLTES 51 (171)
T ss_pred ccHHHhCCeEEEEEEcccccccchh
Confidence 3344567999999999999998763
No 221
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=86.82 E-value=1.5 Score=25.74 Aligned_cols=20 Identities=15% Similarity=0.328 Sum_probs=15.7
Q ss_pred EEEeCCCChhhhhhhHhhcC
Q psy17681 51 VLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~ 70 (148)
..|+.+.||+|++.+-.+..
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 45778999999999876643
No 222
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=86.72 E-value=1.5 Score=29.17 Aligned_cols=21 Identities=14% Similarity=0.463 Sum_probs=16.6
Q ss_pred EEEEeCCCChhhhhhhHhhcC
Q psy17681 50 MVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~ 70 (148)
+..|+.++|+.|++....+.+
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~ 22 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456778999999998777654
No 223
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=86.35 E-value=7 Score=25.42 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=30.6
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
.|++... --+++++++||.+..+..+ +.+.++|.+.+.+
T Consensus 72 ~l~~~~~-~f~~vLiGKDG~vK~r~~~----------p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 72 RLRIPPG-GFTVVLIGKDGGVKLRWPE----------PIDPEELFDTIDA 110 (118)
T ss_pred HhCCCCC-ceEEEEEeCCCcEEEecCC----------CCCHHHHHHHHhC
Confidence 6665422 5778999999999999888 8889988877653
No 224
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=85.34 E-value=1.8 Score=27.58 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=23.6
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
..|+.++|+.|++....+.+. ...|-.+|+..+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccC
Confidence 468899999999988877542 235666666653
No 225
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=83.84 E-value=1.9 Score=27.84 Aligned_cols=32 Identities=13% Similarity=0.444 Sum_probs=22.5
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD 88 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~ 88 (148)
..|+.++|+.|++....+.+. ...|..+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------GIEYQFIDIGE 33 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCceEEEecCC
Confidence 367899999999988877542 23556666654
No 226
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.77 E-value=5.8 Score=23.30 Aligned_cols=20 Identities=10% Similarity=0.070 Sum_probs=15.3
Q ss_pred EEEeCCCChhhhhhhHhhcC
Q psy17681 51 VLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~ 70 (148)
..++.++||+|++..-.+..
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 45667899999988777654
No 227
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.40 E-value=3.7 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=16.6
Q ss_pred EEEEeCCCChhhhhhhHhhcC
Q psy17681 50 MVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~ 70 (148)
+..|+.++|+.|++-...+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 457888999999997776653
No 228
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=81.12 E-value=1.6 Score=20.43 Aligned_cols=17 Identities=12% Similarity=0.469 Sum_probs=9.0
Q ss_pred hHHHHHHHHH-HHHHhhh
Q psy17681 3 YRNVLAAVCV-LCVVSCQ 19 (148)
Q Consensus 3 ~~~~~~~~~~-l~~~~~~ 19 (148)
+++++..+++ +.+.+|+
T Consensus 7 mKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 3445555444 4467775
No 229
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=80.58 E-value=6.5 Score=25.98 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=50.1
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCch-HHHhhcCCcEE--EecCCCC-CCC---CCCCCCCCCccce
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASP-EIAELAPKFEM--VNISDDE-EPQ---DPKYAPDGDYVPR 106 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~-~~~~~~~~~v~--v~v~~~~-~~~---~~~~~v~~~~~Pt 106 (148)
+|+..+. +.+.++|.|-... |+-.+ ...|.+.+ +......+.+. |-+.+.. ..+ .++|++....+|.
T Consensus 13 tFdKvi~----kf~~~LVKFD~ay-PyGeK-hd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 13 TFDKVIP----KFKYVLVKFDVAY-PYGEK-HDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp HHHHHGG----GSSEEEEEEEESS---CHH-HHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred ehhheec----cCceEEEEEeccC-CCcch-HHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 4554443 4789999997432 22222 23344444 22333345544 4333311 111 2289996544999
Q ss_pred EEEECCCCceeeee--cCCCCccccccccCChhHHHHHHHh
Q psy17681 107 ILYFGPQGEPKSQV--FNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 107 ~~~~~~~G~~~~~~--~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
++++..+++.-.++ .| ..+.+.|..++++
T Consensus 87 ~~LF~~~~~~pv~~p~~~----------~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 87 IYLFVGDKEEPVRYPFDG----------DVTADNLQRFVKS 117 (126)
T ss_dssp EEEEESSTTSEEEE-TCS-----------S-HHHHHHHHHH
T ss_pred EEEecCCCCCCccCCccC----------CccHHHHHHHHHh
Confidence 99998666655555 66 6778888888764
No 230
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=80.43 E-value=4 Score=26.27 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=23.1
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD 88 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~ 88 (148)
+..|+.++|+.|++....+.+. ...|..+|+..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCC
Confidence 3467789999999988777542 23566666654
No 231
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.02 E-value=2.8 Score=28.98 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=23.8
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
++++.| +|++++ +|+ ..+.| ..+.+.+.+.++
T Consensus 162 ~~gv~G--vP~~vv---~g~--~~~~G----------~~~~~~l~~~l~ 193 (193)
T PF01323_consen 162 QLGVFG--VPTFVV---NGK--YRFFG----------ADRLDELEDALQ 193 (193)
T ss_dssp HTTCSS--SSEEEE---TTT--EEEES----------CSSHHHHHHHH-
T ss_pred HcCCcc--cCEEEE---CCE--EEEEC----------CCCHHHHHHHhC
Confidence 789999 999988 566 55678 677777776653
No 232
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.31 E-value=19 Score=29.40 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=47.8
Q ss_pred cCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCce-eeeecCC
Q psy17681 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEP-KSQVFNA 123 (148)
Q Consensus 45 ~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~-~~~~~G~ 123 (148)
=.+||-|.++.+.|+.|.++...+++..... + -+.+...... .. .|++.+.+ +|+. --++.|
T Consensus 17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~-~i~~~~~~~~---------~~--~p~~~~~~-~~~~~~i~f~g- 79 (517)
T PRK15317 17 LERPIELVASLDDSEKSAELKELLEEIASLS---D-KITVEEDSLD---------VR--KPSFSITR-PGEDTGVRFAG- 79 (517)
T ss_pred CCCCEEEEEEeCCCchHHHHHHHHHHHHHhC---C-ceEEEEccCC---------CC--CCEEEEEc-CCccceEEEEe-
Confidence 3567777777778999999988886654443 2 2333322111 23 89988886 5532 245677
Q ss_pred CCccccccccCChhHHHHHHHhhh
Q psy17681 124 KSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
-....++...+...+
T Consensus 80 ---------~P~g~Ef~s~i~~i~ 94 (517)
T PRK15317 80 ---------IPMGHEFTSLVLALL 94 (517)
T ss_pred ---------cCccHHHHHHHHHHH
Confidence 666777776666543
No 233
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=78.97 E-value=8.4 Score=21.06 Aligned_cols=19 Identities=5% Similarity=-0.111 Sum_probs=15.0
Q ss_pred EEeCCCChhhhhhhHhhcC
Q psy17681 52 LIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 52 ~f~a~wC~~C~~~~~~~~~ 70 (148)
.|+.++||.|++..-.+..
T Consensus 3 ly~~~~~~~~~~~~~~l~~ 21 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEE 21 (71)
T ss_pred EEeCCCCccHHHHHHHHHH
Confidence 5677999999988777654
No 234
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=76.62 E-value=1.8 Score=27.84 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=39.9
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcCchHHHh-hcCCcEE--EecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecC
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEM--VNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~v~--v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
....+.|++..|.-+.+....---+++..+ ....+-. +. ...+.....+|++.. +|+++|+. +|+.+..+.|
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-~~~e~~L~~r~gv~~--~PaLvf~R-~g~~lG~i~g 100 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-RAAERALAARFGVRR--WPALVFFR-DGRYLGAIEG 100 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-HHHHHHHHHHHT-TS--SSEEEEEE-TTEEEEEEES
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-chhHHHHHHHhCCcc--CCeEEEEE-CCEEEEEecC
Confidence 455666666666555443222111233222 3333322 33 122233445999999 99999998 8999988888
No 235
>PHA03075 glutaredoxin-like protein; Provisional
Probab=76.59 E-value=1.9 Score=28.16 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=21.9
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcCch
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAASP 72 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~~~ 72 (148)
|.++|.|.-|-|+-|+.....+..++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~le 27 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELE 27 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhh
Confidence 67899999999999999888875443
No 236
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=75.66 E-value=7.7 Score=25.78 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.1
Q ss_pred EEEEeCCCChhhhhhhHhhcC
Q psy17681 50 MVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~ 70 (148)
+..|+.++|+.|++-...+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 346778999999997776653
No 237
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=75.58 E-value=2.6 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=15.5
Q ss_pred EEEeCCCChhhhhhhHhhcC
Q psy17681 51 VLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~ 70 (148)
..++.++|++|++..-.+..
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~ 21 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAE 21 (73)
T ss_pred EEEECCCChhHHHHHHHHHH
Confidence 35678999999998777643
No 238
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=74.47 E-value=4.3 Score=27.14 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
+.++.+ +||+++ ||+.+ .| ..+.+++.+.+++
T Consensus 131 ~~~i~~--tPt~~i---nG~~~---~~----------~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 131 QLGITG--TPTFFI---NGKYV---VG----------PYTIEELKELIDK 162 (162)
T ss_dssp HHT-SS--SSEEEE---TTCEE---ET----------TTSHHHHHHHHHH
T ss_pred HcCCcc--ccEEEE---CCEEe---CC----------CCCHHHHHHHHcC
Confidence 678889 999877 78875 56 6778888877764
No 239
>KOG0855|consensus
Probab=74.40 E-value=4.3 Score=28.42 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred cCCCEEEEEe-CCCChhhhhhhHhhcCchHH
Q psy17681 45 SGKPLMVLIH-KSYCAACHELSPKFAASPEI 74 (148)
Q Consensus 45 ~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~ 74 (148)
.+|+|+++|| +..-|-|-+..=-|.+....
T Consensus 89 ~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k 119 (211)
T KOG0855|consen 89 GNKPVVLFFYPAASTPGCTKQACGFRDNYEK 119 (211)
T ss_pred CCCcEEEEEeccCCCCCcccccccccccHHH
Confidence 3669999999 45666776665555554443
No 240
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.08 E-value=9.1 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCEEEEE-e---CCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCC
Q psy17681 37 AGLQAAKTSGKPLMVLI-H---KSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89 (148)
Q Consensus 37 ~~~~~a~~~~k~vli~f-~---a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~ 89 (148)
+.++..-+++ +|+++. . .|-|+++.+....+..... .+|..+|+-.+
T Consensus 6 ~~I~~~i~~n-~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-----v~~~~vnVL~d 56 (105)
T COG0278 6 DRIQKQIKEN-PVVLFMKGTPEFPQCGFSAQAVQILSACGV-----VDFAYVDVLQD 56 (105)
T ss_pred HHHHHHhhcC-ceEEEecCCCCCCCCCccHHHHHHHHHcCC-----cceeEEeeccC
Confidence 4444444444 555544 3 3778888777666644221 57888998875
No 241
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.60 E-value=36 Score=24.34 Aligned_cols=98 Identities=13% Similarity=0.096 Sum_probs=56.2
Q ss_pred HhcCCCEEEEEe-CCCChhhhhhhHhhcCchHHH-hhcCCcEEEecCCC--------C----CCC---------------
Q psy17681 43 KTSGKPLMVLIH-KSYCAACHELSPKFAASPEIA-ELAPKFEMVNISDD--------E----EPQ--------------- 93 (148)
Q Consensus 43 ~~~~k~vli~f~-a~wC~~C~~~~~~~~~~~~~~-~~~~~~v~v~v~~~--------~----~~~--------------- 93 (148)
...||.++++|| ++-=+-|=-.-..+.+..... +.+...+.+++|.. . ...
T Consensus 30 d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~v 109 (194)
T COG0450 30 DYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEI 109 (194)
T ss_pred hhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhH
Confidence 334699999999 677777755555555544433 33335566777761 1 110
Q ss_pred CCCCCCCC----CccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 94 DPKYAPDG----DYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 94 ~~~~~v~~----~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
...|++-. .-.=.++++|++|.+....+...+ .-++.++++..++.+
T Consensus 110 s~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~------iGRn~dEilR~idAl 160 (194)
T COG0450 110 ARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLT------IGRNVDEILRVIDAL 160 (194)
T ss_pred HHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCC------CCcCHHHHHHHHHHH
Confidence 00444431 014467999999998876554111 024577777777654
No 242
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.72 E-value=7.6 Score=28.40 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+.+|++ +||++| +|+. .+.| -.+.+.+.+.+++++
T Consensus 179 e~gI~g--VP~fv~---d~~~--~V~G----------aq~~~v~~~al~~~~ 213 (225)
T COG2761 179 EMGIRG--VPTFVF---DGKY--AVSG----------AQPYDVLEDALRQLL 213 (225)
T ss_pred HCCCcc--CceEEE---cCcE--eecC----------CCCHHHHHHHHHHHH
Confidence 889999 999988 3332 3468 778888888888764
No 243
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.29 E-value=6 Score=28.71 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=19.4
Q ss_pred CCEEEEEeCCCChhhhhhhHhhcC
Q psy17681 47 KPLMVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~~~~~~~ 70 (148)
+..++.|.-.-||+|++..+.+.+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 677888889999999777776665
No 244
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=67.44 E-value=6.5 Score=25.81 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.4
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
++++.+ +||+++ +|+. +.| ..+.+.+.+.+
T Consensus 124 ~~gi~g--tPt~~v---~g~~---~~G----------~~~~~~l~~~i 153 (154)
T cd03023 124 ALGITG--TPAFII---GDTV---IPG----------AVPADTLKEAI 153 (154)
T ss_pred HcCCCc--CCeEEE---CCEE---ecC----------CCCHHHHHHHh
Confidence 778999 999665 3553 468 77777777655
No 245
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.09 E-value=11 Score=27.17 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+.++.| +||+++-+ ||+...--.| .++.+.+.+.+.+.+.+
T Consensus 169 rlg~~G--fPTl~le~-ng~~~~l~~g--------~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 169 RLGAAG--FPTLALER-NGTMYVLGTG--------AYFGSPDAWLARLAQRL 209 (212)
T ss_pred HhccCC--CCeeeeee-CCceEeccCC--------cccCCcHHHHHHHHHHH
Confidence 678888 99999988 8886654445 44778899998888765
No 246
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=65.01 E-value=41 Score=22.84 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=41.1
Q ss_pred EEEEEeCCCChhhhhhhHhhcCchHHHhhcCCc-EEEecCCCCCCCCCCCCCCCCc-cceEEEECCCCceeeeecCCCCc
Q psy17681 49 LMVLIHKSYCAACHELSPKFAASPEIAELAPKF-EMVNISDDEEPQDPKYAPDGDY-VPRILYFGPQGEPKSQVFNAKSP 126 (148)
Q Consensus 49 vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-v~v~v~~~~~~~~~~~~v~~~~-~Pt~~~~~~~G~~~~~~~G~~~~ 126 (148)
=++.++.|.|+=|+.-...++. ..| |.+....+-.....+++|+... -=.+.++ +|..+. |
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~--------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~vE---G---- 89 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKA--------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYVE---G---- 89 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHh--------CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEEe---c----
Confidence 3678889999999887776653 244 3332222111112246654200 1123455 466654 6
Q ss_pred cccccccCChhHHHHHHHh
Q psy17681 127 QVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 127 ~~~~~~~~~~~~l~~~l~~ 145 (148)
....+.+...+++
T Consensus 90 ------HVPa~aI~~ll~~ 102 (149)
T COG3019 90 ------HVPAEAIARLLAE 102 (149)
T ss_pred ------cCCHHHHHHHHhC
Confidence 6777887777765
No 247
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=64.56 E-value=4.4 Score=23.06 Aligned_cols=19 Identities=11% Similarity=0.016 Sum_probs=15.2
Q ss_pred EEeCCCChhhhhhhHhhcC
Q psy17681 52 LIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 52 ~f~a~wC~~C~~~~~~~~~ 70 (148)
.|+.++|++|++..-.+..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEeCCCCcchHHHHHHHHH
Confidence 5677899999998877654
No 248
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=64.02 E-value=15 Score=22.14 Aligned_cols=39 Identities=21% Similarity=0.439 Sum_probs=20.8
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
+|-... -|+++++|.+|+++.++.=+. + +.+.+.+.|.+
T Consensus 36 k~i~G~--~P~L~l~d~~g~~~E~i~i~~--------w-~~d~i~efL~~ 74 (78)
T PF08806_consen 36 KYIPGA--PPELVLLDEDGEEVERINIEK--------W-KTDEIEEFLNE 74 (78)
T ss_dssp EEESS-----EEEEE-SSS--SEEEE-SS--------S-SHCHHHHHHHH
T ss_pred EEeCCC--CCEEEEEcCCCCEEEEEEccc--------C-CHHHHHHHHHH
Confidence 444455 899999999999776533211 3 57777777654
No 249
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=62.35 E-value=17 Score=27.05 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=29.5
Q ss_pred CCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 97 YAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 97 ~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
.++.-.++..++++|++|++.+.-.| ..+.+++....+
T Consensus 210 Lgi~N~~~GYvyLVD~~grIRWagsG----------~At~~E~~~L~k 247 (252)
T PF05176_consen 210 LGINNSYVGYVYLVDPNGRIRWAGSG----------PATPEELESLWK 247 (252)
T ss_pred hCCCCCCcCeEEEECCCCeEEeCccC----------CCCHHHHHHHHH
Confidence 34433458899999999999999999 888888766544
No 250
>PRK11627 hypothetical protein; Provisional
Probab=61.95 E-value=7.8 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=15.4
Q ss_pred ChhHHHHHHHHHHHHHhhhc
Q psy17681 1 MFYRNVLAAVCVLCVVSCQG 20 (148)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~~ 20 (148)
|+.+.++.+++++++.+|++
T Consensus 1 mlkklll~l~a~~~L~gCA~ 20 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCAT 20 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcC
Confidence 77777777776777888876
No 251
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=61.88 E-value=80 Score=25.85 Aligned_cols=77 Identities=9% Similarity=0.087 Sum_probs=45.6
Q ss_pred CCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCc-eeeeecCCC
Q psy17681 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGE-PKSQVFNAK 124 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~-~~~~~~G~~ 124 (148)
.+||-|.++.+.|+.|.++...+++..... +. +.+..... .... .|++.+.. +|+ .--++.|
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s---~k-i~~~~~~~--------~~~~--~p~~~~~~-~~~~~~i~f~g-- 80 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS---DK-ISLTQNTA--------DTLR--KPSFTILR-DGADTGIRFAG-- 80 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC---CC-eEEEEecC--------CcCC--CCeEEEec-CCcccceEEEe--
Confidence 567767666668999999988886554433 22 33322211 1123 79988874 554 2345677
Q ss_pred CccccccccCChhHHHHHHHhhh
Q psy17681 125 SPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~l~~al 147 (148)
-....++...+...+
T Consensus 81 --------~P~g~Ef~s~i~~i~ 95 (515)
T TIGR03140 81 --------IPGGHEFTSLVLAIL 95 (515)
T ss_pred --------cCCcHHHHHHHHHHH
Confidence 566777766665543
No 252
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=61.12 E-value=5.4 Score=22.84 Aligned_cols=19 Identities=16% Similarity=0.147 Sum_probs=14.8
Q ss_pred EEeCCCChhhhhhhHhhcC
Q psy17681 52 LIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 52 ~f~a~wC~~C~~~~~~~~~ 70 (148)
.++.++||+|++.+-.+..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~ 21 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGL 21 (71)
T ss_pred eEecCCCcHhHHHHHHHHH
Confidence 4667999999988777643
No 253
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.56 E-value=12 Score=27.17 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=26.6
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.+++.+ +||+++-+. .+.| +.+.++|.+.+++++
T Consensus 210 ~~gv~g--TPt~~v~~~------~~~g----------~~~~~~l~~~i~~~~ 243 (244)
T COG1651 210 QLGVNG--TPTFIVNGK------LVPG----------LPDLDELKAIIDEAL 243 (244)
T ss_pred hcCCCc--CCeEEECCe------eecC----------CCCHHHHHHHHHHhh
Confidence 778889 999877653 4568 788899988888764
No 254
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=60.00 E-value=12 Score=23.73 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=34.0
Q ss_pred EeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCC-CCCCCCCCCccceEEEECCCCc
Q psy17681 53 IHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ-DPKYAPDGDYVPRILYFGPQGE 115 (148)
Q Consensus 53 f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~-~~~~~v~~~~~Pt~~~~~~~G~ 115 (148)
||=.+||.|......+... .....+-.+++..+.... ...++++....-+.+.+.++|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~----d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR----DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc----CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 6778999999988877653 112345557764322211 2345554222555566566887
No 255
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=59.72 E-value=16 Score=23.66 Aligned_cols=81 Identities=16% Similarity=0.331 Sum_probs=44.4
Q ss_pred CChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCC--CCCccceEEEECCCCceeeeecCCCCccccccccC
Q psy17681 57 YCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAP--DGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYY 134 (148)
Q Consensus 57 wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v--~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~ 134 (148)
-|++|..++-.+...+..... -++..|+.-+......+..+- ++ .|++++=+ |.....-.++.+ =..|..
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~-ldV~rV~f~RPR~~vi~llGE~~Qs--lPvLVL~~--~~~~~~~~~~~~---~~rfi~ 94 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRER-LDVRRVDFPRPRQAVIALLGEANQS--LPVLVLAD--GAPSPDDAGSHG---GRRFID 94 (112)
T ss_pred ECCchHHHHhHHhhChhhhhc-ccEEEeCCCCchHHHHHHhChhccC--CCEEEeCC--CCCCcccccccC---CeEEeC
Confidence 499999999988877765542 234456555533333333332 45 89876654 332211112111 123466
Q ss_pred ChhHHHHHHHh
Q psy17681 135 DVPSIVQAMKS 145 (148)
Q Consensus 135 ~~~~l~~~l~~ 145 (148)
+.+.|...+.+
T Consensus 95 d~~~I~~~La~ 105 (112)
T PF11287_consen 95 DPRRILRYLAE 105 (112)
T ss_pred CHHHHHHHHHH
Confidence 77777777654
No 256
>COG5510 Predicted small secreted protein [Function unknown]
Probab=57.11 E-value=13 Score=19.83 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHH----HHHHhhhcccCCCCCCcc
Q psy17681 1 MFYRNVLAAVCV----LCVVSCQGDLSRGFGGHI 30 (148)
Q Consensus 1 m~~~~~~~~~~~----l~~~~~~~~~~~~~~~~i 30 (148)
|+.+.+++++++ .++.+|. ..++.|+.|
T Consensus 1 mmk~t~l~i~~vll~s~llaaCN--T~rG~G~DI 32 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACN--TMRGAGKDI 32 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhh--hhhccchhH
Confidence 556644444332 2335663 334444443
No 257
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=56.69 E-value=17 Score=21.96 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=15.3
Q ss_pred EEEEeCCCChhhhhhhHhhcC
Q psy17681 50 MVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~ 70 (148)
+..++.+.|++|++..-.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~ 39 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAA 39 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHH
Confidence 444668889999988766643
No 258
>PRK11372 lysozyme inhibitor; Provisional
Probab=56.29 E-value=37 Score=21.85 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHHHhhhcccC---CCCCCcccceeHHHHHHHHHhcCCCEEEEEeC
Q psy17681 1 MFYRNVLAAVCVLCVVSCQGDLS---RGFGGHINWKSLDAGLQAAKTSGKPLMVLIHK 55 (148)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~a~~~~k~vli~f~a 55 (148)
|-++.+++++++++|.+|..... ......+.|.- .++++.+.|+.
T Consensus 1 ~~mk~ll~~~~~~lL~gCs~~~~~~~~~~~~~~~Y~C----------~~~~~~v~~~~ 48 (109)
T PRK11372 1 MSMKKLLIICLPVLLTGCSAYNQFVERMQTDTLEYQC----------DEKPLTVKLNN 48 (109)
T ss_pred CchHHHHHHHHHHHHHHhcCCccccCCCCCCcEEEEe----------CCcEEEEEEEC
Confidence 45566666666666788875221 12223445552 14667666664
No 259
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=55.58 E-value=24 Score=23.52 Aligned_cols=70 Identities=16% Similarity=0.099 Sum_probs=35.3
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQ 113 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~ 113 (148)
.+.+.+.++.+.|-++++-=.-+. .+.+.............. ..+.+| +..-.+|+|+. +|++++...+
T Consensus 13 ~Lk~l~~~a~~~g~~~VlRG~~~~-----~~~~T~~~i~~L~~~~~~-~~v~Id---P~lF~~f~I~~--VPa~V~~~~~ 81 (130)
T TIGR02742 13 LLKQLLDQAEALGAPLVIRGLLDN-----GFKATATRIQSLIKDGGK-SGVQID---PQWFKQFDITA--VPAFVVVKDG 81 (130)
T ss_pred HHHHHHHHHHHhCCeEEEeCCCCC-----CHHHHHHHHHHHHhcCCC-CcEEEC---hHHHhhcCceE--cCEEEEECCC
Confidence 566666677666755554422222 122222222222111111 222222 33334999999 9999999755
Q ss_pred C
Q psy17681 114 G 114 (148)
Q Consensus 114 G 114 (148)
+
T Consensus 82 ~ 82 (130)
T TIGR02742 82 L 82 (130)
T ss_pred C
Confidence 3
No 260
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=54.89 E-value=50 Score=20.55 Aligned_cols=75 Identities=8% Similarity=0.038 Sum_probs=41.9
Q ss_pred CCCEEE-EEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECCCCceeeeecCCC
Q psy17681 46 GKPLMV-LIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAK 124 (148)
Q Consensus 46 ~k~vli-~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~ 124 (148)
.+||-+ .|..+. ..|..+...+.+.+... ++ +.+.... ... . .|++.+.+.+...--++.|
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS---dk-I~~~~~~--~~~-------~--~P~~~i~~~~~~~gIrF~G-- 79 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLS---DK-ITLEEDN--DDE-------R--KPSFSINRPGEDTGIRFAG-- 79 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhC---Cc-eEEEEec--CCC-------C--CCEEEEecCCCcccEEEEe--
Confidence 455645 554444 99998888776544333 22 3332211 111 3 8999988643222245567
Q ss_pred CccccccccCChhHHHHHHHhh
Q psy17681 125 SPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 125 ~~~~~~~~~~~~~~l~~~l~~a 146 (148)
-....++...+...
T Consensus 80 --------iP~GhEf~Slilai 93 (94)
T cd02974 80 --------IPMGHEFTSLVLAL 93 (94)
T ss_pred --------cCCchhHHHHHHHh
Confidence 66677777766553
No 261
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=54.62 E-value=16 Score=24.73 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=14.6
Q ss_pred CCCCCCCccceEEEECCCCceeee
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQ 119 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~ 119 (148)
++++.+ +||+++ +|+.+..
T Consensus 138 ~~gi~g--TPt~iI---nG~~~~~ 156 (178)
T cd03019 138 KYKITG--VPAFVV---NGKYVVN 156 (178)
T ss_pred HcCCCC--CCeEEE---CCEEEEC
Confidence 779999 999877 6775543
No 262
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=53.49 E-value=22 Score=25.28 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHhhh
Q psy17681 2 FYRNVLAAVCVLCVVSCQ 19 (148)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~ 19 (148)
..+.++++++++++.+|+
T Consensus 2 ~~~~~~~~~~~llL~gCa 19 (202)
T PRK00022 2 RRLLRLLLLAALLLAGCA 19 (202)
T ss_pred chhHHHHHHHHHHHHhCC
Confidence 345566666677778896
No 263
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=52.70 E-value=18 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=21.8
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHH
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l 143 (148)
+.++.| +||+++ +|+. .+.| ..+.+.+.+.+
T Consensus 170 ~~gv~G--~Pt~vv---~g~~--~~~G----------~~~~~~~~~~i 200 (201)
T cd03024 170 QLGISG--VPFFVF---NGKY--AVSG----------AQPPEVFLQAL 200 (201)
T ss_pred HCCCCc--CCEEEE---CCeE--eecC----------CCCHHHHHHHh
Confidence 678999 999877 4442 3568 77777776654
No 264
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=52.12 E-value=8 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEeCCCChhhhhhhHhhcCchHHHhhc
Q psy17681 52 LIHKSYCAACHELSPKFAASPEIAELA 78 (148)
Q Consensus 52 ~f~a~wC~~C~~~~~~~~~~~~~~~~~ 78 (148)
.|.-|.|++|-...|.+.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 588899999999999998877665543
No 265
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=51.73 E-value=20 Score=25.79 Aligned_cols=30 Identities=13% Similarity=0.459 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCcccce
Q psy17681 4 RNVLAAVCVLCVVSCQGDLSRGFGGHINWK 33 (148)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ 33 (148)
++++++++++++.+|+........+...|.
T Consensus 2 k~i~~l~l~lll~~C~~~~~~~~~~~~~W~ 31 (216)
T PF11153_consen 2 KKILLLLLLLLLTGCSTNPNEPLQPYFEWR 31 (216)
T ss_pred hHHHHHHHHHHHHhhcCCCccCCCCCCccE
Confidence 344555556677888765443222344555
No 266
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=50.60 E-value=36 Score=23.54 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=24.2
Q ss_pred cceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHH
Q psy17681 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMK 144 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~ 144 (148)
--.++++|++|++++...| -.+.+++.+.++
T Consensus 125 ~SaiiVlDK~G~V~F~k~G----------~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 125 SSAIIVLDKQGKVQFVKEG----------ALSPAEVQQVIA 155 (160)
T ss_pred CceEEEEcCCccEEEEECC----------CCCHHHHHHHHH
Confidence 4578899999999999999 666666665554
No 267
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=50.19 E-value=28 Score=18.95 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.7
Q ss_pred ChhHHHHHHHH
Q psy17681 1 MFYRNVLAAVC 11 (148)
Q Consensus 1 m~~~~~~~~~~ 11 (148)
|+.|.+.++++
T Consensus 1 MmKk~i~~i~~ 11 (48)
T PRK10081 1 MVKKTIAAIFS 11 (48)
T ss_pred ChHHHHHHHHH
Confidence 66676666544
No 268
>PRK11443 lipoprotein; Provisional
Probab=45.95 E-value=17 Score=24.06 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy17681 4 RNVLAAVCVLCVVSCQG 20 (148)
Q Consensus 4 ~~~~~~~~~l~~~~~~~ 20 (148)
|.+++++++++|.+|++
T Consensus 2 k~~~~~~~~~lLsgCa~ 18 (124)
T PRK11443 2 KKFIAPLLALLLSGCQI 18 (124)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 46666666778888876
No 269
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=45.44 E-value=25 Score=24.90 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=12.9
Q ss_pred CCcccceeHHHHHHHHHhcCCCEEEEEeCCCChh
Q psy17681 27 GGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAA 60 (148)
Q Consensus 27 ~~~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~ 60 (148)
...+++..+.+.+ .++++|++|.|.+-|=-+
T Consensus 116 ~~~is~~~lr~~l---~~~~~P~LllFGTGwGL~ 146 (185)
T PF09936_consen 116 PNTISYAELRRML---EEEDRPVLLLFGTGWGLA 146 (185)
T ss_dssp SS-B-HHHHHHHH---HH--S-EEEEE--TT---
T ss_pred CCCcCHHHHHHHH---hccCCeEEEEecCCCCCC
Confidence 3445555555444 345788888888888543
No 270
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=44.78 E-value=20 Score=23.13 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.1
Q ss_pred EEEEeCCCChhhhhhhHhhcC
Q psy17681 50 MVLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~ 70 (148)
+..|+.+.|+.|++-...+.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346788999999987766643
No 271
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=43.82 E-value=86 Score=20.11 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=37.0
Q ss_pred eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCCCCCCCCCCCCCCCCccceEEEECC
Q psy17681 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGP 112 (148)
Q Consensus 34 ~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~~~~~v~~~~~Pt~~~~~~ 112 (148)
.+.+.+..+.+.|-++++-=..+. .+.+.+....+.......-..+.+| +..-.+|+|+. +|++++...
T Consensus 12 ~L~~l~~~a~~~~~~~V~RG~~~g-----~~~~t~~~~~~l~~~~~~~~~v~Id---P~~F~~y~I~~--VPa~V~~~~ 80 (113)
T PF09673_consen 12 SLRNLLKQAERAGVVVVFRGFPDG-----SFKPTAKAIQELLRKDDPCPGVQID---PRLFRQYNITA--VPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCC-----CHHHHHHHHHHHhhccCCCcceeEC---hhHHhhCCceE--cCEEEEEcC
Confidence 456666666655433333222232 4555555444443332222233333 33344899999 999999975
No 272
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=42.32 E-value=64 Score=18.16 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=14.8
Q ss_pred EEEeCCCChhhhhhhHhhcC
Q psy17681 51 VLIHKSYCAACHELSPKFAA 70 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~ 70 (148)
..|+.++|++|++..-.+..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~ 21 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKA 21 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHH
Confidence 35778999999877666543
No 273
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=41.42 E-value=16 Score=21.19 Aligned_cols=17 Identities=0% Similarity=-0.142 Sum_probs=13.6
Q ss_pred EeCCCChhhhhhhHhhc
Q psy17681 53 IHKSYCAACHELSPKFA 69 (148)
Q Consensus 53 f~a~wC~~C~~~~~~~~ 69 (148)
++.++|++|++..-.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~ 18 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALE 18 (75)
T ss_dssp EEETTSHHHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHH
Confidence 57899999998876653
No 274
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=40.50 E-value=25 Score=22.55 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=29.1
Q ss_pred HhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEe
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVN 85 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~ 85 (148)
+-+||++||.=.|+-|+.-. .-..+.++...+.. +.+..+-
T Consensus 18 ~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~-~gl~ILa 58 (108)
T PF00255_consen 18 KYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD-KGLEILA 58 (108)
T ss_dssp GGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG-GTEEEEE
T ss_pred HcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc-CCeEEEe
Confidence 44599999999999999888 55566666666654 3554433
No 275
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=40.16 E-value=55 Score=21.93 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=44.5
Q ss_pred CCEEEEEeCCCChhhhhh-hHhhcCchHHHhhcCCcEEEecCCCCCCCC---CCCC--CCCCccceEEEECCCCceeeee
Q psy17681 47 KPLMVLIHKSYCAACHEL-SPKFAASPEIAELAPKFEMVNISDDEEPQD---PKYA--PDGDYVPRILYFGPQGEPKSQV 120 (148)
Q Consensus 47 k~vli~f~a~wC~~C~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~~~~~---~~~~--v~~~~~Pt~~~~~~~G~~~~~~ 120 (148)
+-+.+.+--+=|+=--.. +|-....-.....-++.+.|-...|.+... ..|. .++ -|.+.+++ ||++++.+
T Consensus 35 ~GTtlVvVNSVCGCAag~ARPa~~~al~~~kkPD~lvTVFAGqDkEAt~~aR~yf~~~pPS--SPS~ALfK-dGelvh~i 111 (136)
T PF06491_consen 35 EGTTLVVVNSVCGCAAGNARPAAAMALQNDKKPDHLVTVFAGQDKEATAKAREYFEPYPPS--SPSIALFK-DGELVHFI 111 (136)
T ss_dssp -SEEEEEEE-SSHHHHHTHHHHHHHHHHHSS--SEEEEEETTTSHHHHHHHHHTSTTS-----SSEEEEEE-TTEEEEEE
T ss_pred CCcEEEEEeccccccccccCHHHHHHHhCCCCCCceEEeccCCCHHHHHHHHHhcCCCCCC--Cchheeee-CCEEEEEe
Confidence 334444445566532222 554432222222233566665554322111 1332 234 89999997 99988643
Q ss_pred cCCCCccccccccCChhHHHHHHHhhh
Q psy17681 121 FNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 121 ~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.- ..-.-.+.++|.+.|..|.
T Consensus 112 eR------h~IEGr~a~~Ia~~L~~af 132 (136)
T PF06491_consen 112 ER------HHIEGRPAEEIAENLQDAF 132 (136)
T ss_dssp -G------GGTTTS-HHHHHHHHHHHH
T ss_pred eh------hhcCCCCHHHHHHHHHHHH
Confidence 22 1112467889999888874
No 276
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=39.88 E-value=24 Score=26.06 Aligned_cols=56 Identities=20% Similarity=0.268 Sum_probs=36.5
Q ss_pred ccce-eHHHHHHHHHhcCCCEEEEEeCCCChhhhhhhHhhcCchHHHhh----cCCcEEEecC
Q psy17681 30 INWK-SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL----APKFEMVNIS 87 (148)
Q Consensus 30 i~~~-~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~~~~~~~~~~~~~----~~~~v~v~v~ 87 (148)
-.|. .-...+. ...|++++|-+=-.+|..|......++.+....+. +..|++|+--
T Consensus 11 p~W~i~~~~pm~--~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 11 PPWKIGGQDPML--NSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCceECCchHhh--hcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 3566 2233343 34599999999999999999888777776654332 2245666533
No 277
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=39.69 E-value=73 Score=22.54 Aligned_cols=21 Identities=0% Similarity=0.047 Sum_probs=15.5
Q ss_pred CEEEEEeCCCCh-hhhhhhHhh
Q psy17681 48 PLMVLIHKSYCA-ACHELSPKF 68 (148)
Q Consensus 48 ~vli~f~a~wC~-~C~~~~~~~ 68 (148)
.+.|..+.++|| .|..+....
T Consensus 39 ~i~ieL~~~~aP~t~~NF~~L~ 60 (190)
T PRK10903 39 NIELELNSQKAPVSVKNFVDYV 60 (190)
T ss_pred cEEEEEeCCCCcHHHHHHHHHH
Confidence 788999999998 565555443
No 278
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=39.52 E-value=15 Score=15.63 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHhh
Q psy17681 6 VLAAVCVLCVVSC 18 (148)
Q Consensus 6 ~~~~~~~l~~~~~ 18 (148)
++++++++++.|.
T Consensus 4 ~vIIlvvLLliSf 16 (19)
T PF13956_consen 4 LVIILVVLLLISF 16 (19)
T ss_pred ehHHHHHHHhccc
Confidence 3444445555444
No 279
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.25 E-value=32 Score=23.57 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=14.0
Q ss_pred CCCCCCCccceEEEECCCCceeeeecC
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFN 122 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G 122 (148)
+.++.| +||+++ +|+. +.|
T Consensus 162 ~~gi~g--vPtfvv---~g~~---~~G 180 (192)
T cd03022 162 ARGVFG--VPTFVV---DGEM---FWG 180 (192)
T ss_pred HcCCCc--CCeEEE---CCee---ecc
Confidence 678999 999877 4653 357
No 280
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.38 E-value=12 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.624 Sum_probs=10.7
Q ss_pred CCChhhhhhhHhhc
Q psy17681 56 SYCAACHELSPKFA 69 (148)
Q Consensus 56 ~wC~~C~~~~~~~~ 69 (148)
--||+|+++.|.+-
T Consensus 10 i~CPhCRQ~ipALt 23 (163)
T TIGR02652 10 IRCPHCRQNIPALT 23 (163)
T ss_pred CcCchhhcccchhe
Confidence 36999999877543
No 281
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=38.24 E-value=12 Score=25.28 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=10.3
Q ss_pred CChhhhhhhHhhc
Q psy17681 57 YCAACHELSPKFA 69 (148)
Q Consensus 57 wC~~C~~~~~~~~ 69 (148)
-||+|+++.|.+-
T Consensus 8 ~CPhCRq~ipALt 20 (161)
T PF09654_consen 8 QCPHCRQTIPALT 20 (161)
T ss_pred cCchhhcccchhe
Confidence 5999999877543
No 282
>PRK15346 outer membrane secretin SsaC; Provisional
Probab=36.53 E-value=99 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHHHHhhhcccCCCC-CCccc--ce--eHHHHHHH-HHhcCCCEEEE
Q psy17681 1 MFYRNVLAAVCVLCVVSCQGDLSRGF-GGHIN--WK--SLDAGLQA-AKTSGKPLMVL 52 (148)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~~~~~~~~-~~~i~--~~--~~~~~~~~-a~~~~k~vli~ 52 (148)
|+.+.+++.+|+|+..-.+.+.+..+ +..++ .. ++.+.++. +...|+++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~di~~vl~~~a~~~g~nivv~ 58 (499)
T PRK15346 1 MKKLLILIFLFLLNTAKFAASKSIPWQGNPFFIYSRGMPLAEVLHDLGANYGIPVVIS 58 (499)
T ss_pred CchhHHHHHHHHHhhhhhhccCCCCCCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEC
Confidence 56666666666666542222222222 22222 22 55555543 35678888765
No 283
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=35.84 E-value=75 Score=22.23 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhcccCC
Q psy17681 6 VLAAVCVLCVVSCQGDLSR 24 (148)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~ 24 (148)
+.+++.++++.+|.+.+++
T Consensus 5 ~~~~~~~~~~~~c~~~~~~ 23 (177)
T TIGR03516 5 IAVILLLLLLLGCKTPEAR 23 (177)
T ss_pred HHHHHHHHHHhhcCCCCCC
Confidence 3444445667888875543
No 284
>TIGR01004 PulS_OutS lipoprotein, PulS/OutS family. This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae, the OutS protein of Erwinia chrysanthemi and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family.
Probab=35.77 E-value=94 Score=20.69 Aligned_cols=20 Identities=15% Similarity=0.527 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhhhcccC
Q psy17681 4 RNVLAAVCVLCVVSCQGDLS 23 (148)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~~ 23 (148)
|.+++.+|.+.+.+|++..+
T Consensus 7 ~~l~~~l~~~~L~GCQq~~~ 26 (128)
T TIGR01004 7 KCIAFGLCCVSLSGCQQNPA 26 (128)
T ss_pred HHHHHHHHHHHHHHccCCCC
Confidence 34455555555889987543
No 285
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.01 E-value=47 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.279 Sum_probs=22.8
Q ss_pred CcccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhh
Q psy17681 28 GHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHEL 64 (148)
Q Consensus 28 ~~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~ 64 (148)
-.+++.++.. ...+.+||++|.|.+-|--+=..|
T Consensus 118 N~isy~~lr~---~I~e~dkp~LilfGTGwGlpde~m 151 (190)
T COG4752 118 NTISYSWLRN---EIQERDKPWLILFGTGWGLPDELM 151 (190)
T ss_pred CcccHHHHHH---HHhhcCCcEEEEecCCCCCCHHHH
Confidence 3444444333 334569999999999998776655
No 286
>PRK09810 entericidin A; Provisional
Probab=35.01 E-value=55 Score=17.20 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=10.7
Q ss_pred ChhHHHHHHHHHH-HHHhhhc
Q psy17681 1 MFYRNVLAAVCVL-CVVSCQG 20 (148)
Q Consensus 1 m~~~~~~~~~~~l-~~~~~~~ 20 (148)
|..+.++++++.+ .+.+|..
T Consensus 1 mMkk~~~l~~~~~~~L~aCNT 21 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCNT 21 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhhh
Confidence 5566655555433 3456654
No 287
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.35 E-value=33 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.1
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHH
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIA 75 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~ 75 (148)
+.+|+..-||+|-...+.+.++....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 67888999999999999888776665
No 288
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=34.32 E-value=81 Score=17.05 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.8
Q ss_pred EEECCCCceeeeecC
Q psy17681 108 LYFGPQGEPKSQVFN 122 (148)
Q Consensus 108 ~~~~~~G~~~~~~~G 122 (148)
+.+++||++.....|
T Consensus 3 ~~I~~dG~V~~~v~G 17 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEG 17 (48)
T ss_pred EEECCCcEEEEEEEe
Confidence 457889999999888
No 289
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=34.07 E-value=49 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.332 Sum_probs=29.8
Q ss_pred CCcccceeHHHHHHHHHhcCCCEEEEEe---------CCCChhh
Q psy17681 27 GGHINWKSLDAGLQAAKTSGKPLMVLIH---------KSYCAAC 61 (148)
Q Consensus 27 ~~~i~~~~~~~~~~~a~~~~k~vli~f~---------a~wC~~C 61 (148)
|.-+.|.+.+.+.+.++..+|++-..|. --||.++
T Consensus 248 GSIL~WlNi~~A~~~~~~~~K~lrfSfG~~r~~~~YK~RWc~~~ 291 (298)
T PRK15312 248 GSILMWLNISRARHYCQERQKKLIFSIGILKPEWEYKRMWSTPY 291 (298)
T ss_pred ccEEEEecHHHHHHHHHhcCCcEEEEecCCCCChhHHhhcCccc
Confidence 4567899999999999999999999999 2578765
No 290
>KOG1364|consensus
Probab=34.01 E-value=69 Score=25.11 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=29.9
Q ss_pred CCCCCCCccceEEEECCC-CceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 96 KYAPDGDYVPRILYFGPQ-GEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~-G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
-|.+.. +|.+.++|+. |+.+.+..| ...+++++..+.+
T Consensus 149 Fy~~~~--~P~i~iiDp~Tge~v~~ws~----------vi~~~~fl~~l~~ 187 (356)
T KOG1364|consen 149 FYHISS--LPHIAIIDPITGERVKRWSG----------VIEPEQFLSDLNE 187 (356)
T ss_pred heeccC--CceEEEECCchhhhhhhhcc----------ccCHHHHHHHHHH
Confidence 677888 9999999987 888888878 5557777766654
No 291
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=33.71 E-value=63 Score=18.60 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=13.6
Q ss_pred EEEeCCCChhhhhhhHhhc
Q psy17681 51 VLIHKSYCAACHELSPKFA 69 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~ 69 (148)
..++.+.|+.|++..-.+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~ 20 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIA 20 (73)
T ss_pred EEecCCCCccHHHHHHHHH
Confidence 4577889999977765443
No 292
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=33.04 E-value=1.2e+02 Score=18.59 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=21.1
Q ss_pred cceEEEECCCCceeeeecCCCCccccccccCC-hhHHHHHHHhhh
Q psy17681 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYD-VPSIVQAMKSAL 147 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~-~~~l~~~l~~al 147 (148)
=|.++.+|.+|+-+-...|. ... .++|.+.+.+++
T Consensus 38 DPaVvvvde~g~~vIplL~G---------H~GGan~lA~~iA~~l 73 (84)
T PF11760_consen 38 DPAVVVVDEDGRFVIPLLGG---------HRGGANELARQIAELL 73 (84)
T ss_dssp --EEEEE-TT--EEEEEE-T---------TTT-HHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCEEEEeccC---------CcchHHHHHHHHHHHh
Confidence 68889999999866554441 444 788988888765
No 293
>PF07148 MalM: Maltose operon periplasmic protein precursor (MalM); InterPro: IPR010794 This family consists of several maltose operon periplasmic protein precursor (MalM) sequences. The function of this family is unknown [].; GO: 0008643 carbohydrate transport, 0042597 periplasmic space
Probab=32.88 E-value=43 Score=22.45 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=16.1
Q ss_pred ccceEEEECCCCceeeeec
Q psy17681 103 YVPRILYFGPQGEPKSQVF 121 (148)
Q Consensus 103 ~~Pt~~~~~~~G~~~~~~~ 121 (148)
+.|.++++|++++++..+.
T Consensus 32 faP~vliLD~~~~~~~~~~ 50 (135)
T PF07148_consen 32 FAPNVLILDENFQPVRTYP 50 (135)
T ss_pred EeeeEEEECCCCCEEEEcC
Confidence 4899999999999987543
No 294
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=31.99 E-value=89 Score=16.80 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=23.8
Q ss_pred cceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhh
Q psy17681 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
-..+.+...||+++....| |.+...-.+.++..
T Consensus 5 ~~~f~L~a~ng~viasse~----------Y~sk~~a~~~I~~V 37 (49)
T PF07411_consen 5 QFRFRLKAGNGEVIASSEG----------YSSKADAEKGIESV 37 (49)
T ss_dssp EEEEEEE-TTS-EEEEBEE----------BSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCEEEecCC----------cCCHHHHHHHHHHH
Confidence 5667888999999998777 88887777666543
No 295
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=30.75 E-value=1.1e+02 Score=19.38 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=21.4
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD 88 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~ 88 (148)
..|+.+.|.-|++....+.+. ...|..+|+.+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA------GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccc
Confidence 467889999999987766542 23455555544
No 296
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=30.57 E-value=53 Score=23.39 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy17681 4 RNVLAAVCVLCVVSCQG 20 (148)
Q Consensus 4 ~~~~~~~~~l~~~~~~~ 20 (148)
|.++++++++++.+|+.
T Consensus 3 ~~~~~l~~~llLsgCa~ 19 (202)
T TIGR00548 3 RLFLALSALALLTACAG 19 (202)
T ss_pred eeHHHHHHHHHHhhccC
Confidence 34455555667788865
No 297
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=28.79 E-value=17 Score=26.13 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=9.7
Q ss_pred CCCChhhhhhhH
Q psy17681 55 KSYCAACHELSP 66 (148)
Q Consensus 55 a~wC~~C~~~~~ 66 (148)
.-|||.|+.+..
T Consensus 11 MGWCPnaka~e~ 22 (205)
T PF07895_consen 11 MGWCPNAKALET 22 (205)
T ss_pred hCcCcCcCcccc
Confidence 469999998854
No 298
>TIGR02747 TraV type IV conjugative transfer system lipoprotein TraV. The TraV protein is a component of conjugative type IV secretion systems. TraV is an outer membrane lipoprotein and is believed to interact with the secretin TraK. The alignment contains three conserved cysteines in the N-terminal half.
Probab=28.41 E-value=43 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHHHhhhcccC
Q psy17681 1 MFYRNVLAAVCVLCVVSCQGDLS 23 (148)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~~~~~ 23 (148)
|..+.++++++.++|.+|++...
T Consensus 1 m~~~~l~~~~~~alLtGCsag~~ 23 (144)
T TIGR02747 1 MRIRFLLLIACVAFLTGCSAGCN 23 (144)
T ss_pred CceeehhHHHHHHHhhcccCCCC
Confidence 55555666666555888866433
No 299
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=15 Score=26.12 Aligned_cols=16 Identities=13% Similarity=0.332 Sum_probs=13.0
Q ss_pred CCCEEEEEeCCCChhh
Q psy17681 46 GKPLMVLIHKSYCAAC 61 (148)
Q Consensus 46 ~k~vli~f~a~wC~~C 61 (148)
.+.++=.||.-||..|
T Consensus 5 ~~~~~gk~~iyWCe~c 20 (202)
T COG5270 5 MPVVLGKFPIYWCEKC 20 (202)
T ss_pred cceeecccceeehhhC
Confidence 4556667999999999
No 300
>COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=27.84 E-value=58 Score=23.23 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=22.6
Q ss_pred CCCCCCCccceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHh
Q psy17681 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKS 145 (148)
Q Consensus 96 ~~~v~~~~~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (148)
+|++.+.-.=++..-.++|+....+.+.. ..-..|-.+-++|...+.+
T Consensus 133 ryni~tkv~i~I~A~~~~Gk~~Kny~at~--~~~GafsAsN~eI~~vln~ 180 (204)
T COG3056 133 RYNIDTKVDITITATAANGKMVKNYRATY--NVEGAFSASNDEIADVLNS 180 (204)
T ss_pred eecccceEEEEEEEEcCCCceeeeeeeee--eeeeeeecCChHHHHHHHH
Confidence 55554311333344467787665554421 1222344555666555544
No 301
>PHA03357 Alkaline exonuclease; Provisional
Probab=27.47 E-value=11 Score=22.41 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=12.8
Q ss_pred CCCChhhhhhhHhhcCch
Q psy17681 55 KSYCAACHELSPKFAASP 72 (148)
Q Consensus 55 a~wC~~C~~~~~~~~~~~ 72 (148)
..||+.|++-+..+-...
T Consensus 10 gg~C~~CkR~N~LvT~sG 27 (81)
T PHA03357 10 GGICGLCKRYNELVTCDG 27 (81)
T ss_pred CceechhcccCeEEecCC
Confidence 479999988766665543
No 302
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.16 E-value=43 Score=23.01 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEeCCCChhhhhhhHhhcCchHHH
Q psy17681 50 MVLIHKSYCAACHELSPKFAASPEIA 75 (148)
Q Consensus 50 li~f~a~wC~~C~~~~~~~~~~~~~~ 75 (148)
+.+|+-+.||+|-...+.+.+....+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 45677899999998888887766554
No 303
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=26.57 E-value=68 Score=20.51 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHHHHHhhh
Q psy17681 1 MFYRNVLAAVCVLCVVSCQ 19 (148)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~ 19 (148)
|++|+++.+++.++|.+|.
T Consensus 3 ~~mk~~~~l~~~l~LS~~s 21 (104)
T PRK14864 3 MVMRRFASLLLTLLLSACS 21 (104)
T ss_pred hHHHHHHHHHHHHHHhhhh
Confidence 5677766666666665553
No 304
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=26.54 E-value=18 Score=27.33 Aligned_cols=8 Identities=38% Similarity=1.236 Sum_probs=5.6
Q ss_pred CCCChhhh
Q psy17681 55 KSYCAACH 62 (148)
Q Consensus 55 a~wC~~C~ 62 (148)
+-|||.|+
T Consensus 265 t~~CP~CQ 272 (273)
T COG0266 265 TFYCPVCQ 272 (273)
T ss_pred CEeCCCCC
Confidence 46788876
No 305
>PF14369 zf-RING_3: zinc-finger
Probab=26.14 E-value=18 Score=18.14 Aligned_cols=9 Identities=22% Similarity=1.028 Sum_probs=7.1
Q ss_pred CCChhhhhh
Q psy17681 56 SYCAACHEL 64 (148)
Q Consensus 56 ~wC~~C~~~ 64 (148)
-||..|.+.
T Consensus 3 ywCh~C~~~ 11 (35)
T PF14369_consen 3 YWCHQCNRF 11 (35)
T ss_pred EeCccCCCE
Confidence 589999765
No 306
>PF00879 Defensin_propep: Defensin propeptide The pattern for this Prosite entry doesn't match the propeptide.; InterPro: IPR002366 Defensins are 2-6 kDa, cationic, microbicidal peptides active against many Gram-negative and Gram-positive bacteria, fungi, and enveloped viruses [], containing three pairs of intramolecular disulphide bonds []. On the basis of their size and pattern of disulphide bonding, mammalian defensins are classified into alpha, beta and theta categories. Alpha-defensins, which have been identified in humans, monkeys and several rodent species, are particularly abundant in neutrophils, certain macrophage populations and Paneth cells of the small intestine. Every mammalian species explored thus far has beta-defensins. In cows, as many as 13 beta-defensins exist in neutrophils. However, in other species, beta-defensins are more often produced by epithelial cells lining various organs (e.g. the epidermis, bronchial tree and genitourinary tract). Theta-defensins are cyclic and have so far only been identified in primate phagocytes. Defensins are produced constitutively and/or in response to microbial products or proinflammatory cytokines. Some defensins are also called corticostatins (CS) because they inhibit corticotropin-stimulated corticosteroid production. The mechanism(s) by which microorganisms are killed and/or inactivated by defensins is not understood completely. However, it is generally believed that killing is a consequence of disruption of the microbial membrane. The polar topology of defensins, with spatially separated charged and hydrophobic regions, allows them to insert themselves into the phospholipid membranes so that their hydrophobic regions are buried within the lipid membrane interior and their charged (mostly cationic) regions interact with anionic phospholipid head groups and water. Subsequently, some defensins can aggregate to form `channel-like' pores; others might bind to and cover the microbial membrane in a `carpet-like' manner. The net outcome is the disruption of membrane integrity and function, which ultimately leads to the lysis of microorganisms. Some defensins are synthesized as propeptides which may be relevant to this process - in neutrophils only the mature peptides have been identified but in Paneth cells, the propeptide is stored in vesicles [] and appears to be cleaved by trypsin on activation. ; GO: 0006952 defense response
Probab=25.69 E-value=1.2e+02 Score=16.81 Aligned_cols=13 Identities=0% Similarity=0.072 Sum_probs=9.1
Q ss_pred hcCCCEEEEEeCC
Q psy17681 44 TSGKPLMVLIHKS 56 (148)
Q Consensus 44 ~~~k~vli~f~a~ 56 (148)
.++..+.|.|+.+
T Consensus 37 ~edQdv~ISf~~~ 49 (52)
T PF00879_consen 37 AEDQDVSISFAGD 49 (52)
T ss_pred ccCCcEEEEecCC
Confidence 4467888888754
No 307
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=25.40 E-value=86 Score=20.64 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=19.7
Q ss_pred cceEEEECCCCceeeeecCCCCccccccccCChhHHH
Q psy17681 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIV 140 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~ 140 (148)
--|++++||.|+.+. ..| +++.+++.
T Consensus 111 q~TlFl~DP~gN~lE-fK~----------fR~~e~vF 136 (138)
T COG3565 111 QRTLFLFDPSGNALE-FKG----------FRDQEQVF 136 (138)
T ss_pred eEEEEEECCCCCeee-eec----------ccchhhhh
Confidence 558899999999886 456 77766654
No 308
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=25.15 E-value=89 Score=19.18 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=14.8
Q ss_pred eEEEECCCCceeeeecCC
Q psy17681 106 RILYFGPQGEPKSQVFNA 123 (148)
Q Consensus 106 t~~~~~~~G~~~~~~~G~ 123 (148)
.+++.||+|+.+.-..|+
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 468889999999877773
No 309
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=24.71 E-value=49 Score=18.74 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=12.4
Q ss_pred CCCChhhhhhhHhhcC
Q psy17681 55 KSYCAACHELSPKFAA 70 (148)
Q Consensus 55 a~wC~~C~~~~~~~~~ 70 (148)
.++|++|.+..-.+..
T Consensus 13 ~s~sp~~~~v~~~L~~ 28 (72)
T cd03054 13 PSLSPECLKVETYLRM 28 (72)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 3799999988777654
No 310
>PF15240 Pro-rich: Proline-rich
Probab=24.40 E-value=78 Score=22.36 Aligned_cols=10 Identities=20% Similarity=0.188 Sum_probs=4.2
Q ss_pred HHHHHHhhhc
Q psy17681 11 CVLCVVSCQG 20 (148)
Q Consensus 11 ~~l~~~~~~~ 20 (148)
++||++|.+.
T Consensus 8 vALLALSSAQ 17 (179)
T PF15240_consen 8 VALLALSSAQ 17 (179)
T ss_pred HHHHHhhhcc
Confidence 3444444443
No 311
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=24.15 E-value=1.3e+02 Score=19.82 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=12.3
Q ss_pred cceEEEECCCCceee
Q psy17681 104 VPRILYFGPQGEPKS 118 (148)
Q Consensus 104 ~Pt~~~~~~~G~~~~ 118 (148)
+=.++++|++|++++
T Consensus 50 ~d~~~~~d~~g~~~~ 64 (161)
T PF05228_consen 50 LDLIFILDPDGRVLY 64 (161)
T ss_pred ccEEEEEcCCCCEEE
Confidence 445789999999997
No 312
>PRK13620 psbV cytochrome c-550; Provisional
Probab=23.82 E-value=9.5 Score=27.52 Aligned_cols=9 Identities=33% Similarity=0.848 Sum_probs=8.0
Q ss_pred CCCChhhhh
Q psy17681 55 KSYCAACHE 63 (148)
Q Consensus 55 a~wC~~C~~ 63 (148)
..||..|+.
T Consensus 112 ~~~Ca~CHV 120 (215)
T PRK13620 112 AYACGQCHV 120 (215)
T ss_pred HhhhhhccC
Confidence 899999994
No 313
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=23.53 E-value=17 Score=27.20 Aligned_cols=12 Identities=33% Similarity=1.115 Sum_probs=8.7
Q ss_pred CCCChhhhhhhH
Q psy17681 55 KSYCAACHELSP 66 (148)
Q Consensus 55 a~wC~~C~~~~~ 66 (148)
+-|||.|+...|
T Consensus 255 ty~Cp~CQ~~~~ 266 (269)
T PRK14811 255 THFCPQCQPLRP 266 (269)
T ss_pred cEECCCCcCCCC
Confidence 478888887654
No 314
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=23.52 E-value=1.4e+02 Score=16.90 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCEEEEEeC-----------CCChhhhhhhH
Q psy17681 36 DAGLQAAKTSGKPLMVLIHK-----------SYCAACHELSP 66 (148)
Q Consensus 36 ~~~~~~a~~~~k~vli~f~a-----------~wC~~C~~~~~ 66 (148)
.+.+..+.-.|.+|+-.-.. |=||.|+++-.
T Consensus 14 K~kI~esav~G~pVvALCGk~wvp~rdp~~~PVCP~Ck~iye 55 (58)
T PF11238_consen 14 KDKIAESAVMGTPVVALCGKVWVPTRDPKPFPVCPECKEIYE 55 (58)
T ss_pred hhHHHHHHhcCceeEeeeCceeCCCCCCCCCCCCcCHHHHHH
Confidence 34455566678888766443 55999987644
No 315
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=23.30 E-value=1.3e+02 Score=17.61 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=16.0
Q ss_pred EEEECCCCcee-eeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 107 ILYFGPQGEPK-SQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 107 ~~~~~~~G~~~-~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
.+-++++|++. .++.. ...-..+-+.+.+|+
T Consensus 31 ~i~i~~dG~v~~~~i~~----------sSG~~~~D~av~~ai 62 (85)
T PF13103_consen 31 RITIDPDGRVISVRIVK----------SSGNPAFDAAVRRAI 62 (85)
T ss_dssp EEEE-TTSBEEEEEEEE------------S-HHHHHHHHHHH
T ss_pred EEEECCCCCEEEEEEec----------CCCCHHHHHHHHHHH
Confidence 36678899974 33444 344555555555554
No 316
>PRK11162 mltA murein transglycosylase A; Provisional
Probab=22.14 E-value=2e+02 Score=22.72 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.2
Q ss_pred CCChhhhhhhHhhcCc
Q psy17681 56 SYCAACHELSPKFAAS 71 (148)
Q Consensus 56 ~wC~~C~~~~~~~~~~ 71 (148)
.|-+.|.+....+...
T Consensus 76 ~~~~~~~~~~~~~~~~ 91 (355)
T PRK11162 76 RYSNTYNAVQEWLLAG 91 (355)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4888898887776664
No 317
>KOG4070|consensus
Probab=21.99 E-value=13 Score=25.47 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=17.4
Q ss_pred HhcCCCEEEEEeCCCChhhhhhh
Q psy17681 43 KTSGKPLMVLIHKSYCAACHELS 65 (148)
Q Consensus 43 ~~~~k~vli~f~a~wC~~C~~~~ 65 (148)
+..|+-+=-.-|+.||..|+.++
T Consensus 28 ~asg~em~gkn~~KlcKdc~V~D 50 (180)
T KOG4070|consen 28 KASGTEMNGKNWDKLCKDCKVID 50 (180)
T ss_pred cccccccccccHHHHHhhcCccc
Confidence 34566677778999999997764
No 318
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=21.39 E-value=65 Score=20.58 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=21.4
Q ss_pred EEEeCCCChhhhhhhHhhcCchHHHhhcCCcEEEecCC
Q psy17681 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD 88 (148)
Q Consensus 51 i~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~v~v~v~~ 88 (148)
..|+.+.|.-|++-...+.+. ...|..+|+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~------~i~~~~~di~~ 33 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK------GIEPEVVKYLK 33 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC------CCCeEEEeccC
Confidence 467889999999987777542 23444555544
No 319
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=21.13 E-value=1.2e+02 Score=18.05 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=26.0
Q ss_pred CCcccceeHHHHHHHHHhcCCCEEEEEeCCCChhhhhhh
Q psy17681 27 GGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELS 65 (148)
Q Consensus 27 ~~~i~~~~~~~~~~~a~~~~k~vli~f~a~wC~~C~~~~ 65 (148)
|..+......++++.|...|--++..--..--|-|+.|+
T Consensus 22 g~~lGv~~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~d 60 (76)
T PF05198_consen 22 GEQLGVMSLREALRLAKEKGLDLVEVSPNADPPVCKIMD 60 (76)
T ss_dssp S-EEEEEEHHHHHHHHHHTT-EEEEEETTSSS-EEEEE-
T ss_pred CcEeceEEHHHHHHHHHHcCCcEEEEcCCCCCCeEEEec
Confidence 344455688999999998876665555566678999885
No 320
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.94 E-value=1.7e+02 Score=16.71 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=7.9
Q ss_pred HHHHHH-HHHHHHHhhhc
Q psy17681 4 RNVLAA-VCVLCVVSCQG 20 (148)
Q Consensus 4 ~~~~~~-~~~l~~~~~~~ 20 (148)
+.|+++ +|+.+++-+++
T Consensus 4 Kl~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQS 21 (65)
T ss_pred hhhHHHHHHHHHHHHHhc
Confidence 444444 45555543333
No 321
>PLN02402 cytidine deaminase
Probab=20.94 E-value=1.7e+02 Score=22.61 Aligned_cols=33 Identities=9% Similarity=0.195 Sum_probs=21.1
Q ss_pred HHHHHHHhcC--CCEEEEEeCCCChhhhhhhHhhc
Q psy17681 37 AGLQAAKTSG--KPLMVLIHKSYCAACHELSPKFA 69 (148)
Q Consensus 37 ~~~~~a~~~~--k~vli~f~a~wC~~C~~~~~~~~ 69 (148)
.++..+...| +..-|-+..+-|++|+++..++.
T Consensus 81 ~Ai~~av~~G~~~i~~iaV~~sPCG~CRQ~l~Ef~ 115 (303)
T PLN02402 81 FLITNLTLNAEPHLKYVAVSAAPCGHCRQFFQEIR 115 (303)
T ss_pred HHHHHHHHcCCCceEEEEEEeCCCcccHHHHHHhc
Confidence 3444443333 34455566799999999977774
No 322
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.92 E-value=37 Score=22.06 Aligned_cols=8 Identities=38% Similarity=0.999 Sum_probs=3.9
Q ss_pred CCChhhhh
Q psy17681 56 SYCAACHE 63 (148)
Q Consensus 56 ~wC~~C~~ 63 (148)
++|.+|++
T Consensus 86 D~CM~C~~ 93 (114)
T PF11023_consen 86 DACMHCKE 93 (114)
T ss_pred hccCcCCC
Confidence 45555543
No 323
>PF11576 DUF3236: Protein of unknown function (DUF3236); InterPro: IPR012019 This family of proteins with unknown function appears to be restricted to Methanobacteria. ; PDB: 3BRC_B.
Probab=20.81 E-value=64 Score=21.95 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=23.4
Q ss_pred CCCCCCCccc-eEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 96 KYAPDGDYVP-RILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 96 ~~~v~~~~~P-t~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
+.|++| -= .++++|..|+++.... ++++..+-..=.+.+..++.+||
T Consensus 101 RLGvPG--SGSmlvimD~kGRiLtasl---SPs~~iHk~~ie~~v~~E~~~AL 148 (154)
T PF11576_consen 101 RLGVPG--SGSMLVIMDSKGRILTASL---SPSHVIHKKSIEDAVKKEMIEAL 148 (154)
T ss_dssp E-SSTT--S-EEEEEEETTS-EEEEEE---E--TTTS---HHHHHHHHHHHHH
T ss_pred cccCCC--CccEEEEEcCCCcEEeecc---CchhhhccccHHHHHHHHHHHHH
Confidence 667765 33 4577899999987433 44444444443444555555554
No 324
>KOG1794|consensus
Probab=20.49 E-value=1.5e+02 Score=22.89 Aligned_cols=43 Identities=9% Similarity=0.065 Sum_probs=26.2
Q ss_pred ceEEEECCCCceeeeecCCCCccccccccCChhHHHHHHHhhh
Q psy17681 105 PRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147 (148)
Q Consensus 105 Pt~~~~~~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~al 147 (148)
-.++++|.+|+++.+.+|.-+..-+.-...-.+.|.+++.+|+
T Consensus 15 s~~Vivd~~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~ 57 (336)
T KOG1794|consen 15 SRLVIVDEDGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAK 57 (336)
T ss_pred eEEEEECCCCCEeeEeeccccccccCCchHHHHHHHHHHHHHH
Confidence 3457889899999988885443333333333445566666554
No 325
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=20.47 E-value=2.6e+02 Score=18.77 Aligned_cols=16 Identities=31% Similarity=0.725 Sum_probs=12.1
Q ss_pred CCCChhhhhhhHhhcC
Q psy17681 55 KSYCAACHELSPKFAA 70 (148)
Q Consensus 55 a~wC~~C~~~~~~~~~ 70 (148)
.+-|+.|+++.-+|..
T Consensus 85 ~sPCG~CRQ~i~Ef~~ 100 (134)
T COG0295 85 VSPCGACRQVLAEFCG 100 (134)
T ss_pred cCCcHHHHHHHHHhcC
Confidence 4779999888777654
No 326
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=20.16 E-value=1.7e+02 Score=22.11 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=27.5
Q ss_pred CCCCccceEEEECCCCceeeeec--CCCCccccccccCChhHHHHHHHhh
Q psy17681 99 PDGDYVPRILYFGPQGEPKSQVF--NAKSPQVYRHYYYDVPSIVQAMKSA 146 (148)
Q Consensus 99 v~~~~~Pt~~~~~~~G~~~~~~~--G~~~~~~~~~~~~~~~~l~~~l~~a 146 (148)
..+ +|.+.+.|.+|+.+-... |......|-+--.|.+.+++.+++.
T Consensus 79 L~~--VPVFtItn~~G~pvl~s~~~~~~~~gvf~s~qedA~afL~~lk~~ 126 (270)
T TIGR00995 79 LAG--TSVFTVSNAQNEFVLASDNDGEKSIGLLCFRQEDAEAFLAQLRKR 126 (270)
T ss_pred hcC--CceEEEEcCCCCeEEEECCCCCceEEEEECCHHHHHHHHHHHHhh
Confidence 446 999999999999876542 2222233222222366777777653
Done!