RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17681
(148 letters)
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 138 bits (348), Expect = 8e-43
Identities = 60/126 (47%), Positives = 84/126 (66%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L +GFG HI+W++L+ G + A SG PLMV+IHKS+C AC L PKFA S EI+EL+ F
Sbjct: 22 LGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF 81
Query: 82 EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQ 141
MVN+ D+EEP+D ++PDG Y+PRIL+ P G+ ++ N Y+++Y +VQ
Sbjct: 82 VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 141
Query: 142 AMKSAL 147
MK A
Sbjct: 142 GMKEAQ 147
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 122 bits (307), Expect = 1e-36
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 2/127 (1%)
Query: 22 LSRGFGGHINW-KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK 80
LSRG+G I W ++ + GL A+ S KPLMV+ H C L FA + EI E+A +
Sbjct: 19 LSRGWGDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-Q 77
Query: 81 FEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIV 140
+ + ++ E D +PDG YVPRI++ P ++ + S ++Y + D+P ++
Sbjct: 78 NKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLI 137
Query: 141 QAMKSAL 147
+ MK AL
Sbjct: 138 ENMKKAL 144
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 68.4 bits (167), Expect = 6e-16
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 30 INWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89
W + L A K + KP +++ ++C C L A +A FE+V I
Sbjct: 13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVG 72
Query: 90 EEPQDPKYA-----PDGDYVPRILYFGPQGEP 116
++ + + P D +P ++ G+
Sbjct: 73 NFDRNLELSQAYGDPIQDGIPAVVVVNSDGKV 104
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 57.4 bits (139), Expect = 1e-11
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 30 INWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNISD 88
+ W L A+ G+ +MV H +C C +++ + P ++ L +F + ++
Sbjct: 3 LRWYPYPEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASV-S 61
Query: 89 DEEPQDP----KYAPDGDYVPRILYFGPQGEPKSQVF 121
+ P+ +Y G P ++ P+ +V
Sbjct: 62 VDTPEGQELARRYRVPG--TPTFVFLVPKAGAWEEVG 96
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 51.5 bits (123), Expect = 4e-09
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 13/113 (11%)
Query: 30 INWKSLDAGLQAAKTSGKPLMVLIHKS-YCAACHELSPKFAASPEIAE-LAPKFEMVNIS 87
+ W+S L+ +K KP+ + S +C C ++ + S E MV +
Sbjct: 31 LQWESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVD 90
Query: 88 DDEEPQDPKYAPDGDY----------VPRILYFGPQGEPKSQV-FNAKSPQVY 129
++ P+ + P +++ +G+ +++ F Y
Sbjct: 91 FPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFEPGGGAAY 143
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 50.4 bits (120), Expect = 9e-09
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 4/105 (3%)
Query: 29 HINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNI- 86
H + D G++ A+ KP+M+ C C ++ P+++ + + ++ +
Sbjct: 30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLY 89
Query: 87 --SDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVY 129
+ + K +G + F A + Y
Sbjct: 90 VDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRVKFGANAQPFY 134
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 45.9 bits (109), Expect = 2e-07
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 29 HINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAE-LAPKFEMVNIS 87
S L+ A+ K L V ++C C LS +A+ F + +
Sbjct: 10 AFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKM- 68
Query: 88 DDEEPQDPKYAPDGDY----VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAM 143
D E+ + + Y P +L+ GE ++ A+ +++ +
Sbjct: 69 DMEKGEGVELR--KKYGVHAYPTLLFINSSGEVVYRLVGAEDAP----------ELLKKV 116
Query: 144 KSALN 148
K +
Sbjct: 117 KLGVE 121
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 44.8 bits (106), Expect = 6e-07
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 29 HINWKS-LDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI- 86
I L+ L AK GKP+M+ ++ +C AC E + P++ + ++
Sbjct: 15 QIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQAN 72
Query: 87 SDDEEPQDP----KYAPDGDYVPRILYFGPQGE 115
+ QD G +P IL+F QG+
Sbjct: 73 VTANDAQDVALLKHLNVLG--LPTILFFDGQGQ 103
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 43.7 bits (103), Expect = 2e-06
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK---FEMVNISDDE 90
S + + + K LM+ I AC L+ ++ + + + F V +E
Sbjct: 30 SFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEE 89
Query: 91 EPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQ 127
+ ++ GD+ P + P+ K ++
Sbjct: 90 GQRYIQFYKLGDF-PYVSILDPRTGQKLVEWHQLDVS 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 34/149 (22%), Positives = 53/149 (35%), Gaps = 46/149 (30%)
Query: 7 LAAVCVLCVVSCQ--GDL---SRGFGGHI-------------NWKSLDAGLQAAKTSGKP 48
LA V + G+L +G GH +W+S ++ A
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA------ 299
Query: 49 LMVLIHKSYCAACHELSPKFAASPEIAELAPKFE------MVNISD--DEEPQD-----P 95
+ VL C+E P + P I E + + M++IS+ E+ QD
Sbjct: 300 ITVLFFIGV--RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 96 KYAPDGDYVPRI-LYFGPQ-----GEPKS 118
+ P G V I L G + G P+S
Sbjct: 358 SHLPAGKQV-EISLVNGAKNLVVSGPPQS 385
Score = 30.8 bits (69), Expect = 0.17
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 39/127 (30%)
Query: 29 HINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISD 88
H +L A L + + K+Y A F A
Sbjct: 102 H----ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF----------- 146
Query: 89 DEEPQDPKYAPDGDYVPRILY--FGPQGEPKSQVFNAKSP-----QVYRHYYYDVPSIVQ 141
+ +G+ L FG QG N +Y+ Y+ V +++
Sbjct: 147 -------RAVGEGNA---QLVAIFGGQG-------NTDDYFEELRDLYQTYHVLVGDLIK 189
Query: 142 AMKSALN 148
L+
Sbjct: 190 FSAETLS 196
Score = 26.9 bits (59), Expect = 2.8
Identities = 14/95 (14%), Positives = 28/95 (29%), Gaps = 38/95 (40%)
Query: 39 LQAAKTSGKPLMVL----------------IHKSYCAACHELSPKFAASPEIAELAPKF- 81
+A L+ + ++++Y +L I A
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL---------IKFSAETLS 196
Query: 82 EMVNISDDEEP------------QDPKYAPDGDYV 104
E++ + D E ++P PD DY+
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 33.2 bits (76), Expect = 0.007
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDY 103
+V+ + C C E+ + + E++NI +E Y D
Sbjct: 26 QVEPRKLVVYGREGCHLCEEMIASLR--VLQKKSWFELEVINIDGNEHLTR-LY---NDR 79
Query: 104 VPRILYFGPQGE 115
VP + E
Sbjct: 80 VPVLFAVNEDKE 91
>4euy_A Uncharacterized protein; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, unknown
function; 2.90A {Bacillus cereus}
Length = 105
Score = 33.0 bits (76), Expect = 0.009
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ 93
L + +++ I C C + K + E E + I + +
Sbjct: 11 LATYIEEQQLVLLFIKTENCGVCDVMLRKV---NYVLENYNYVEKIEILLQDMQE 62
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 32.4 bits (74), Expect = 0.022
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 42 AKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFE------MVNISDDEEPQDP 95
G P +++ C C E+ E++ ++ + E + +++
Sbjct: 22 EAKEGIPTIIMFKTDTCPYCVEM------QKELSYVSKEREGKFNIYYARLEEEKNIDLA 75
Query: 96 -KYAPDGDYVPRILYFGPQGEPKSQ 119
KY + VP ++ +G
Sbjct: 76 YKYDANI--VPTTVFLDKEGNKFYV 98
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 29.9 bits (67), Expect = 0.12
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYA 98
Q A + I + C C + + + +AE +N + + D +
Sbjct: 22 AQEALDKKETATFFIGRKTCPYCRKFAGTLS--GVVAETKAHIYFINSEEPSQLNDLQAF 79
Query: 99 PDG---DYVPRILYFGPQGEPKSQVFNAKSPQ 127
VP ++ G+ + ++ S Q
Sbjct: 80 RSRYGIPTVPGFVHIT-DGQINVRCDSSMSAQ 110
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 29.6 bits (67), Expect = 0.20
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 16/97 (16%)
Query: 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAEL--APKFEMVNISDDEEPQDPKYAPDGDY 103
+ ++ I+ C AC E+ ASP I A K ++++I DEE + K +
Sbjct: 31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWK-----KH 85
Query: 104 VPRILYFGPQG-EPKSQVFNAKSPQVYRHYYYDVPSI 139
G + + + N YD+ +I
Sbjct: 86 RNDFAKEWTNGYDKELVIKNKNL--------YDLRAI 114
>1ttz_A Conserved hypothetical protein; structural genomics, unknown
function, PSI, protein structure initiative; 2.11A
{Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Length = 87
Score = 28.9 bits (65), Expect = 0.21
Identities = 14/55 (25%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 51 VLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVP 105
L + C C + A A F V I DD + Y G VP
Sbjct: 4 TLYQRDDCHLCDQ-----AVEALAQARAGAFFSVFIDDDAALES-AY---GLRVP 49
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Length = 100
Score = 28.9 bits (65), Expect = 0.22
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 41 AAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF--EMVNISDDEEPQ-DPKY 97
+A P++ L K+ C C E A + +F + V+I+ E +Y
Sbjct: 10 SASNRALPVLTLFTKAPCPLCDE------AKEVLQPYKDRFILQEVDITLPENSTWYERY 63
Query: 98 APDGDYVPRILYFGPQ 113
+P G
Sbjct: 64 ---KFDIPVFHLNGQF 76
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 29.8 bits (67), Expect = 0.26
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKF-AASPEIAELAPKFEMVNISDDEEPQD 94
++V + +C C +L+P++ A+ E+++ +P + + E
Sbjct: 137 KENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDL 196
Query: 95 P-KYAPDGDYVPRILYFGPQGEP 116
++ G P + F +G P
Sbjct: 197 AKRFDVSG--YPTLKIF-RKGRP 216
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 29.3 bits (66), Expect = 0.27
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
+ ++ A T+ K +++ S+C C ++P F A+LA KF
Sbjct: 21 EQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVF------ADLAKKFPNAVF 68
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 29.6 bits (66), Expect = 0.27
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 6/84 (7%)
Query: 36 DAGLQAAKTSGKPLMVL-IHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD 94
A + + + +L + +C C L P E+ IS D
Sbjct: 43 SALTERLQRIERRYRLLVAGEMWCPDCQINLAAL---DFAQRLQPNIELAIISKGRAEDD 99
Query: 95 PK-YAPDGDY-VPRILYFGPQGEP 116
+ +P +L +
Sbjct: 100 LRQRLALERIAIPLVLVLDEEFNL 123
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula}
SCOP: c.47.1.1
Length = 113
Score = 28.8 bits (65), Expect = 0.33
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
+ + K S K ++V S+C C ++P F AELA KF V
Sbjct: 13 DTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIF------AELAKKFPNVTF 60
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 28.9 bits (64), Expect = 0.39
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 12/95 (12%)
Query: 29 HINWKSLDAGLQAAKT-SGKPLMVLI-------HKSYCAACHELSPKFAASPEIAELAPK 80
++ + +A + +GK + KS+C C + P +
Sbjct: 6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 65
Query: 81 FEMVNISDDEEPQDPKYAPDGDY----VPRILYFG 111
F + + +DP + VP +L +G
Sbjct: 66 FIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYG 100
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 29.3 bits (65), Expect = 0.44
Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 43 KTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGD 102
+ +P +V + L P+ + L + ++ +
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKAST--LLYGQLKVGTLDCTIHEGLCN------ 503
Query: 103 YVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSALN 148
+ Q P + VFN S Y ++ I++ ++ N
Sbjct: 504 ------MYNIQAYPTTVVFNQSSIHEY-EGHHSAEQILEFIEDLRN 542
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 28.5 bits (64), Expect = 0.49
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
++ + LQ A S ++V S+C C ++P F A+LA K V
Sbjct: 25 ETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFF------ADLAKKLPNVLF 72
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 28.1 bits (63), Expect = 0.53
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
+ D + K +GK +++ S+C C ++P F AE A KF
Sbjct: 15 QEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVF------AEYAKKFPGAIF 62
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 28.2 bits (63), Expect = 0.73
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
D L A GK ++ +C +++P + EL+ + +
Sbjct: 34 RWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYY------IELSENYPSLMF 80
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 27.8 bits (62), Expect = 0.85
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 33 KSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI 86
DA + AK +GK +++ S+C C ++P F AE A KF
Sbjct: 23 DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVF------AEYAKKFPGAVF 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.99
Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 26/93 (27%)
Query: 72 PEIAELAPKFEMVNISDDEEP-QDPKYAP---------DGDYVPRILYFG-PQGEPKSQV 120
E+ L K+ ++ + P + P D + + + + +
Sbjct: 301 DEVKSLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 121 ----FNAKSPQVYRHYYYD---------VPSIV 140
N P YR + +P+I+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 26.9 bits (60), Expect = 1.5
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAP---KFEMVNISDDE 90
+ DA L K KP++V ++C C ++P F ++ F V++ D
Sbjct: 12 AWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFE---TLSNDYAGKVIFLKVDV--DA 66
Query: 91 EPQ 93
Sbjct: 67 VAA 69
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 27.1 bits (60), Expect = 1.8
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 38 GLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ 93
AA SG+ V + C+ CH+L+P + + E+ + ++ ++
Sbjct: 106 EFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAK--EVDGLLRIGAVNCGDDRM 159
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 26.9 bits (59), Expect = 2.2
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 104 VPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPS 138
VP ++ + P K F K+ Y Y +
Sbjct: 104 VPHLVVYPPAESNKQSQFEWKTSP---FYQYSLVP 135
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron
transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D*
3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Length = 248
Score = 26.6 bits (58), Expect = 2.8
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 24/93 (25%)
Query: 24 RGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAA----------SPE 73
G + S+ G Q +++ CAACH L A + E
Sbjct: 18 NGPFETFDHASIRRGYQ------------VYREVCAACHSL--DRVAWRTLVGVSHTNEE 63
Query: 74 IAELAPKFEMVNISDDEEPQDPKYAPDGDYVPR 106
+ +A +FE + D++ + DY+P
Sbjct: 64 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPG 96
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB:
1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 26.2 bits (58), Expect = 3.4
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQD 94
GK + S+C +P+ + + FE+V + DEE
Sbjct: 28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDG 76
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 26.5 bits (59), Expect = 3.5
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 76 ELAPKFEMVNISD---DEEPQDPKYAPDGDYVPRILYFGPQGE 115
++A KFE +E + K +P + YFG +G
Sbjct: 37 QVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGL 79
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 26.7 bits (58), Expect = 3.7
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFA-ASPEIAELAPKFEMVNISDDEEPQDP-------- 95
S ++ +C C ++P++ A+ + E ++ +++++
Sbjct: 30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPS 89
Query: 96 -KYAPDGDYVPRILYFGP 112
K + D I Y GP
Sbjct: 90 LKIFKNSDVNNSIDYEGP 107
>3ira_A Conserved protein; methanosarcina mazei,structural genomics,
MCSG, protein structure initiative, midwest center for
STRU genomics; 2.10A {Methanosarcina mazei}
Length = 173
Score = 26.2 bits (58), Expect = 3.7
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 30 INWKSL-DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL 77
++W + + A+ KP+ + I S C CH ++ + E+A L
Sbjct: 22 VDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGL 70
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 26.1 bits (57), Expect = 4.8
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 44 TSGKPLMVLIHKSYCAACHELSPKFA-ASPEIAELAPKFEMVNI 86
+ +V + +C L P F AS I E P V
Sbjct: 20 NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 25.8 bits (57), Expect = 4.9
Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNI----SDDEEPQDPKYAPD 100
K +++ + +C C +L P + + + + + I + + + +Y +
Sbjct: 24 PKKDVLIEFYAPWCGHCKQLEPIYT---SLGKKYKGQKDLVIAKMDATANDITNDQYKVE 80
Query: 101 GDYVPRILYFGPQGEPKSQV 120
G P I + P G+ K+ +
Sbjct: 81 G--FPTIYFA-PSGDKKNPI 97
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 25.5 bits (56), Expect = 5.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 56 SYCAACHELSPKFAAS-PEIAELAPKFEMVNISDDEEPQD 94
+C C +P A E+ + + FE++ +S D D
Sbjct: 36 HWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDD 75
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo
sapiens} PDB: 1xbs_A
Length = 149
Score = 25.7 bits (56), Expect = 5.4
Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 44 TSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ 93
T+ K L++ + C +L + + +V++ D+
Sbjct: 21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDV--DQTAV 68
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC;
2.70A {Paracoccus denitrificans}
Length = 263
Score = 26.1 bits (57), Expect = 5.4
Identities = 21/131 (16%), Positives = 38/131 (29%), Gaps = 23/131 (17%)
Query: 24 RGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACH--------ELSPKFAASPEIA 75
G G + L GLQ ++ C+ACH L+ +
Sbjct: 36 EGPFGKFDQHQLQRGLQ------------VYTEVCSACHGLRYVPLRTLADEGGPQLPED 83
Query: 76 ELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYD 135
++ +I+D E +D P D+ P G P + + Y
Sbjct: 84 QVRAYAANFDITDPETEEDRPRVPT-DHFPT--VSGEGMGPDLSLMAKARAGFHGPYGTG 140
Query: 136 VPSIVQAMKSA 146
+ + +
Sbjct: 141 LSQLFNGIGGP 151
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET:
HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A*
351c_A* 451c_A* 1dvv_A*
Length = 82
Score = 24.7 bits (54), Expect = 6.6
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 52 LIHKSYCAACHELSPKFAASPEIAELAPKFE 82
L C ACH + K P ++A KF
Sbjct: 6 LAKNKGCVACHAIDTKMVG-PAYKDVAAKFA 35
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas
stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Length = 82
Score = 24.7 bits (54), Expect = 6.9
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 52 LIHKSYCAACHELSPKFAASPEIAELAPKFE 82
L CAACH + K P + E+A K
Sbjct: 6 LFKSKPCAACHSVDTKMVG-PALKEVAAKNA 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 7.6
Identities = 7/23 (30%), Positives = 7/23 (30%), Gaps = 10/23 (43%)
Query: 91 EPQDPK--------YAPDGDYVP 105
E Q K YA D P
Sbjct: 18 EKQALKKLQASLKLYADDS--AP 38
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron;
HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP:
a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Length = 80
Score = 24.3 bits (53), Expect = 8.2
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 52 LIHKSYCAACHELSPKFAASPEIAELAPKFE 82
L + C ACH+L K P A++A K+
Sbjct: 4 LAKQKGCMACHDLKAKKVG-PAYADVAKKYA 33
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 25.4 bits (56), Expect = 8.3
Identities = 8/78 (10%), Positives = 11/78 (14%), Gaps = 20/78 (25%)
Query: 57 YCAAC---------HELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAP-------- 99
+ P + K E
Sbjct: 347 ANIGAALLDGEVSLASFEIEHLDRPAMRAAMKKVTRF-DMPSETTFSGTTGYTDIVVHTA 405
Query: 100 DGDYVPRILYFGPQGEPK 117
DG RI G +
Sbjct: 406 DGKIERRIEA--TPGSLE 421
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 25.4 bits (56), Expect = 8.5
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 9/46 (19%)
Query: 76 ELAPKFEMVNISDDEEPQDP------KYAPDGDYVPRILYFGPQGE 115
+A K E + PQ K GD +P++ YFGP G+
Sbjct: 36 YVAIKLEPMK---SRAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGK 78
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron
transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP:
a.3.1.1 PDB: 1a8c_A*
Length = 81
Score = 24.3 bits (53), Expect = 8.5
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 52 LIHKSYCAACHELSPKFAASPEIAELAPKFE 82
L K+ C ACH++ K P + ++A K+
Sbjct: 4 LAKKNNCIACHQVETKVVG-PALKDIAAKYA 33
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural
genomics consortium, TBSGC, rossman fold; HET: CDM;
2.00A {Mycobacterium tuberculosis} PDB: 3q7u_A* 3okr_A
2xwn_A*
Length = 231
Score = 25.2 bits (56), Expect = 9.0
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 37 AGLQAAKTSGKPLMVLIH 54
L + +P VL+H
Sbjct: 89 LALTVLSGTAEPEFVLVH 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,330,317
Number of extensions: 128125
Number of successful extensions: 492
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 62
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)