RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17681
(148 letters)
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 108 bits (271), Expect = 5e-32
Identities = 60/126 (47%), Positives = 84/126 (66%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L +GFG HI+W++L+ G + A SG PLMV+IHKS+C AC L PKFA S EI+EL+ F
Sbjct: 1 LGKGFGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF 60
Query: 82 EMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQ 141
MVN+ D+EEP+D ++PDG Y+PRIL+ P G+ ++ N Y+++Y +VQ
Sbjct: 61 VMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQ 120
Query: 142 AMKSAL 147
MK A
Sbjct: 121 GMKEAQ 126
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 49.0 bits (116), Expect = 9e-09
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 2/110 (1%)
Query: 20 GDLSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAEL-A 78
DL R ++ S + + + K LM+ I AC L+ ++ + +
Sbjct: 16 ADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR 75
Query: 79 PKFEMVNISDDE-EPQDPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQ 127
F + D E Q P + P+ K ++
Sbjct: 76 EHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVS 125
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 29.1 bits (64), Expect = 0.098
Identities = 10/89 (11%), Positives = 21/89 (23%)
Query: 39 LQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYA 98
Q A + I + C C + + + + F +
Sbjct: 19 AQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRS 78
Query: 99 PDGDYVPRILYFGPQGEPKSQVFNAKSPQ 127
G G+ + ++ S Q
Sbjct: 79 RYGIPTVPGFVHITDGQINVRCDSSMSAQ 107
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain
{Escherichia coli [TaxId: 562]}
Length = 136
Score = 28.6 bits (63), Expect = 0.20
Identities = 12/102 (11%), Positives = 24/102 (23%), Gaps = 12/102 (11%)
Query: 49 LMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP---KYAPDGDYVP 105
L K+ + E + E KY +
Sbjct: 44 LTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVGLNGAIV 103
Query: 106 RILYFGPQGEPKSQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147
+ FG + ++ + + V ++V K L
Sbjct: 104 GMTTFGESAPAE---------LLFEEFGFTVDNVVAKAKELL 136
>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 144
Score = 26.1 bits (56), Expect = 1.3
Identities = 26/123 (21%), Positives = 39/123 (31%), Gaps = 12/123 (9%)
Query: 22 LSRGFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKF 81
L++ G N S + GK + + S+C C +P A E +A F
Sbjct: 4 LAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNF 63
Query: 82 EMVNISDDEEPQDPK------------YAPDGDYVPRILYFGPQGEPKSQVFNAKSPQVY 129
E+V IS DE D + FG + P NA + +
Sbjct: 64 EVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAII 123
Query: 130 RHY 132
Sbjct: 124 GTQ 126
>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId:
9913]}
Length = 149
Score = 25.6 bits (55), Expect = 1.9
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 28 GHINWKSLDAGLQAAKTSGKPL 49
GH L+ G + G P+
Sbjct: 119 GHRTVSVLNGGFRNWLKEGHPV 140
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId:
1063]}
Length = 124
Score = 25.6 bits (55), Expect = 1.9
Identities = 10/90 (11%), Positives = 21/90 (23%)
Query: 58 CAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVPRILYFGPQGEPK 117
C CH + + + + + G+ + G + +
Sbjct: 15 CQTCHVIVDDSGTTIAGRNAKTGPNLYGVVGRTAGTQADFKGYGEGMKEAGAKGLAWDEE 74
Query: 118 SQVFNAKSPQVYRHYYYDVPSIVQAMKSAL 147
V + P + Y M L
Sbjct: 75 HFVQYVQDPTKFLKEYTGDAKAKGKMTFKL 104
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 199
Score = 25.4 bits (55), Expect = 3.0
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 25 GFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELS 65
G + S+ G Q +++ CAACH L
Sbjct: 19 GPFETFDHASIRRGYQ------------VYREVCAACHSLD 47
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize
(Zea mays) [TaxId: 4577]}
Length = 136
Score = 24.8 bits (53), Expect = 3.9
Identities = 20/121 (16%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 39 LQAAKTSGKPLMVLI---------HKSYCAACHELSPKFAASPEIAELAPKFEMVNISDD 89
+ T KP ++++ K+ E S EL +
Sbjct: 15 ISDNSTGNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEYKESV 74
Query: 90 EEPQDPKYAPDGDYVPRILYF--GPQGEPKSQV---FNAKSPQVYRHYYYDVPSIVQAMK 144
G QG+ +A + +Y+ Y V SI+ A K
Sbjct: 75 LPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYKEYGITVESIIAAAK 134
Query: 145 S 145
S
Sbjct: 135 S 135
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 24.8 bits (53), Expect = 4.0
Identities = 14/69 (20%), Positives = 25/69 (36%)
Query: 46 GKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYVP 105
GK + S+C +P+ + FE++ IS DE +D K
Sbjct: 28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWL 87
Query: 106 RILYFGPQG 114
+ + +G
Sbjct: 88 ALPFEDRKG 96
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 195
Score = 24.6 bits (53), Expect = 4.3
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 15/75 (20%)
Query: 25 GFGGHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSP---KFAASPEIAELAPKF 81
G ++ S+ G Q ++K C++CH + + E K
Sbjct: 16 GLLSSLDHTSIRRGFQ------------VYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKA 63
Query: 82 EMVNISDDEEPQDPK 96
+ + P +
Sbjct: 64 LAEEVEVQDGPNEDG 78
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 24.0 bits (51), Expect = 5.7
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 36 DAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDP 95
DA Q A KP++V ++C C ++P E +N+ D+
Sbjct: 7 DANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNV-DENPETTS 65
Query: 96 KYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQ 127
++ G L GEP Q+ + +
Sbjct: 66 QF---GIMSIPTLILFKGGEPVKQLIGYQPKE 94
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans
[TaxId: 266]}
Length = 99
Score = 23.4 bits (50), Expect = 7.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 58 CAACHELSPKFAASPEI 74
C ACH+L P +
Sbjct: 13 CKACHKLDGNDGVGPHL 29
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 24.3 bits (51), Expect = 8.4
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 28 GHINWKSLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPK 80
GH+ L+ + VLIH + + SPE AE+ +
Sbjct: 243 GHLAQNGPGGMLEVLDGFPRQRKVLIHIN-----NTNPILDENSPERAEVLRR 290
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 23.7 bits (50), Expect = 9.5
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 13/100 (13%)
Query: 45 SGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQDPKYAPDGDYV 104
KP ++ C C E P+ + + V++ E+ DP +
Sbjct: 28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAE 87
Query: 105 PRILY-------------FGPQGEPKSQVFNAKSPQVYRH 131
I F + P VF+ +
Sbjct: 88 HDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ 127
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 23.2 bits (49), Expect = 9.6
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 34 SLDAGLQAAKTSGKPLMVLIHKSYCAACHELSPKFAASPEIAELAPKFEMVNISDDEEPQ 93
+ + K S K ++V S+C C ++P F D +E +
Sbjct: 14 TWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIF----AELAKKFPNVTFLKVDVDELK 69
Query: 94 DPKYAPDGDYVPRILYFGPQGEPKSQVFNAKSPQV 128
+ + +P ++ G+ + A +
Sbjct: 70 AVAEEWNVEAMPTFIFL-KDGKLVDKTVGADKDGL 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,476
Number of extensions: 24923
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 25
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.1 bits)