BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17682
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 179/320 (55%), Positives = 239/320 (74%), Gaps = 4/320 (1%)
Query: 150 NTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVV 209
TGR++ + LV GH PVLDIAW PH+DNVIASGSEDC V VW+IPDGG+ L EPV+
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 210 DLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI--ECHPDIVYSASWN 267
L H +RVG+V WHPTAQNVLL+AG DN + +W+VGTG ++ + + HPD +YS W+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 268 WDGSKLLTTCKDKKMRIINPRTG-AIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSER 326
DG+ + T+C+DK++R+I PR G + E+ HEG++ A+++ G I TTGFS+MSER
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 327 QYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAEPPFVH 386
Q +L HL+EP+ + ELDTS+GV+ P +DPDTN+VYLCGKGDS IRYFEIT+E PF+H
Sbjct: 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH 305
Query: 387 YINTFQTPDPQRGIGMMPKRGCDVNSCEIGRFFRLNNSGLCQVVSMTVPRKSELFQDDLY 446
Y++ F + + QRG+G MPKRG +VN CEI RF++L+ C+ ++MTVPRKS+LFQ+DLY
Sbjct: 306 YLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK-CEPIAMTVPRKSDLFQEDLY 364
Query: 447 PDTVGDTAALTADEWFAGNE 466
P T G ALTA+EW G +
Sbjct: 365 PPTAGPDPALTAEEWLGGRD 384
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 26/32 (81%)
Query: 33 LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 64
L EPV+ L H +RVG+V WHPTAQNVLL+AG
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAG 151
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 43/84 (51%)
Query: 1 DLYPDTVGDTAALTADEWFAVLFRLTYFSPRTLTEPVVDLLYHQRRVGLVLWHPTAQNVL 60
DLYP T G ALTA+EW
Sbjct: 362 DLYPPTAGPDPALTAEEWLG---------------------------------------- 381
Query: 61 LTAGKEAEPILISLKDGYIPPSEK 84
G++A P+LISLKDGY+PP +
Sbjct: 382 ---GRDAGPLLISLKDGYVPPKSR 402
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 178/320 (55%), Positives = 238/320 (74%), Gaps = 4/320 (1%)
Query: 150 NTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVV 209
TGR++ + LV GH PVLDIAW PH+DNVIASGSEDC V VW+IPDGG+ L EPV+
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVI 125
Query: 210 DLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI--ECHPDIVYSASWN 267
L H +RVG+V WHPTAQNVLL+AG DN + +W+VGTG ++ + + HPD +YS W+
Sbjct: 126 TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWS 185
Query: 268 WDGSKLLTTCKDKKMRIINPRTG-AIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSER 326
DG+ + T+C+DK++R+I PR G + E+ HEG++ A+++ G I TTGFS+MSER
Sbjct: 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSER 245
Query: 327 QYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAEPPFVH 386
Q +L HL+EP+ + ELDTS+GV+ P +DPDTN+VYLCGKGDS IRYFEIT+E PF+H
Sbjct: 246 QVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLH 305
Query: 387 YINTFQTPDPQRGIGMMPKRGCDVNSCEIGRFFRLNNSGLCQVVSMTVPRKSELFQDDLY 446
Y++ F + + QRG+G MPKRG +VN EI RF++L+ C+ ++MTVPRKS+LFQ+DLY
Sbjct: 306 YLSMFSSKESQRGMGYMPKRGLEVNKXEIARFYKLHERK-CEPIAMTVPRKSDLFQEDLY 364
Query: 447 PDTVGDTAALTADEWFAGNE 466
P T G ALTA+EW G +
Sbjct: 365 PPTAGPDPALTAEEWLGGRD 384
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 33 LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGKE 66
L EPV+ L H +RVG+V WHPTAQNVLL+AG +
Sbjct: 120 LREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXD 153
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 43/84 (51%)
Query: 1 DLYPDTVGDTAALTADEWFAVLFRLTYFSPRTLTEPVVDLLYHQRRVGLVLWHPTAQNVL 60
DLYP T G ALTA+EW
Sbjct: 362 DLYPPTAGPDPALTAEEWLG---------------------------------------- 381
Query: 61 LTAGKEAEPILISLKDGYIPPSEK 84
G++A P+LISLKDGY+PP +
Sbjct: 382 ---GRDAGPLLISLKDGYVPPKSR 402
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 83 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 134
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 135 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 194 LCRIWDTASG 203
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 216 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 269
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 270 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 308
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 169 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 221
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 222 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 280
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 281 NLVYIWNLQTKEIVQKLQGH 300
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 41 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 100 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 143
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 144 IVSGSFDESVRIWDVKT 160
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 85 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 136
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 137 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 196 LCRIWDTASG 205
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 218 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 271
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 272 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 310
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 171 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 223
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 224 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 282
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 283 NLVYIWNLQTKEIVQKLQGH 302
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 43 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 102 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 145
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 146 IVSGSFDESVRIWDVKT 162
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 115
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 116 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 175 LCRIWDTASG 184
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 197 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 250
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 150 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 202
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 203 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 262 NLVYIWNLQTKEIVQKLQGH 281
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 81 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 124
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 125 IVSGSFDESVRIWDVKT 141
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 115
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 116 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 175 LCRIWDTASG 184
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 197 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 250
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 150 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 202
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 203 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 262 NLVYIWNLQTKEIVQKLQGH 281
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 81 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 124
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 125 IVSGSFDESVRIWDVKT 141
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 78 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 129
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 130 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 189 LCRIWDTASG 198
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 211 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 264
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 265 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 164 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 216
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 217 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 275
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 276 NLVYIWNLQTKEIVQKLQGH 295
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKL 273
H + V V + P + L ++ +D + IW G+ I H + +W+ D + L
Sbjct: 39 HTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 274 LTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAP 333
++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 98 VSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNLIVS 141
Query: 334 DHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 142 GSFDESVRIWDVKT 155
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 118
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 119 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 178 LCRIWDTASG 187
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 200 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 253
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 153 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 205
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 206 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 265 NLVYIWNLQTKEIVQKLQGH 284
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 84 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 127
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 128 IVSGSFDESVRIWDVKT 144
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 118
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 119 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 178 LCRIWDTASG 187
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 200 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 253
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 153 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 205
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 206 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 265 NLVYIWNLQTKEIVQKLQGH 284
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 84 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 127
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 128 IVSGSFDESVRIWDVKT 144
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 112
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 113 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 172 LCRIWDTASG 181
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 194 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 247
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 147 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 199
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 200 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 259 NLVYIWNLQTKEIVQKLQGH 278
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 19 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 78 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 121
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 122 IVSGSFDESVRIWDVKT 138
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 118
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 119 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 178 LCRIWDTASG 187
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 200 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 253
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 254 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 153 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 205
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 206 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 264
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 265 NLVYIWNLQTKEIVQKLQGH 284
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 25 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 84 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 127
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 128 IVSGSFDESVRIWDVKT 144
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 115
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 116 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 175 LCRIWDTASG 184
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 197 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 250
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 251 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 150 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 202
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 203 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 262 NLVYIWNLQTKEIVQKLQGH 281
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 54/137 (39%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L + +D + IW G+ I H + +W+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 81 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 124
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 125 IVSGSFDESVRIWDVKT 141
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 61 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 112
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 113 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 172 LCRIWDTASG 181
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 194 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 247
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 147 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 199
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 200 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 259 NLVYIWNLQTKEIVQKLQGH 278
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 19 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 78 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 121
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 122 IVSGSFDESVRIWDVKT 138
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 62 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 113
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 114 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 173 LCRIWDTASG 182
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 195 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 248
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 249 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 148 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 200
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 201 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 259
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 260 NLVYIWNLQTKEIVQKLQGH 279
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 20 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 79 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 122
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 123 IVSGSFDESVRIWDVKT 139
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 57 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 108
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 109 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 168 LCRIWDTASG 177
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 190 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 243
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 244 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 143 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 195
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 196 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 254
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 255 NLVYIWNLQTKEIVQKLQGH 274
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 15 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 74 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 117
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 118 IVSGSFDESVRIWDVKT 134
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 66 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 117
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 118 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 177 LCRIWDTASG 186
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 199 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 252
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 253 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 152 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 204
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 205 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 263
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 264 NLVYIWNLQTKEIVQKLQGH 283
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 24 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 83 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 126
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 127 IVSGSFDESVRIWDVKT 143
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 60 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 111
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG+ + + H D V + +N DGS ++++ D
Sbjct: 112 CNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 171 LCRIWDTASG 180
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 193 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 246
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 247 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 146 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 198
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 199 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 257
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 258 NLVYIWNLQTKEIVQKLQGH 277
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 18 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 77 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 120
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 121 IVSGSFDESVRIWDVKT 137
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 115
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG + + H D V + +N DGS ++++ D
Sbjct: 116 CNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 175 LCRIWDTASG 184
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 197 PVSFVKFSPNGKYILAA-TLDNDLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 250
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 150 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 202
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN++ +W+ G+ + H + Y N+ G +++ +D
Sbjct: 203 FSPNGK-YILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 262 NMVYIWNLQTKEIVQKLQGH 281
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 81 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 124
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 125 IVSGSFDESVRIWDVKT 141
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 9/130 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GHK + D+AWS D N++ S S+D +K+W + G +TL H V
Sbjct: 64 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKG-------HSNYVFC 115
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
++P + N++++ D +V IW+V TG + + H D V + +N DGS ++++ D
Sbjct: 116 CNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 281 KMRIINPRTG 290
RI + +G
Sbjct: 175 LCRIWDTASG 184
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 167 PVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPT 226
PV + +SP+ ++A+ + D +K+W G +T T +++ + T
Sbjct: 197 PVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGH-----KNEKYCIFANFSVT 250
Query: 227 AQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
+++ DN V IWN+ T EI+ +++ H D+V S +
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H PV + ++ D ++I S S D + ++W G +TL + V V
Sbjct: 150 AHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD------DNPPVSFVK 202
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWD---GSKLLTTCKD 279
+ P + +L A DN + +W+ G+ + H + Y N+ G +++ +D
Sbjct: 203 FSPNGK-YILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 280 KKMRIINPRTGAIEEEAVCH 299
+ I N +T I ++ H
Sbjct: 262 NMVYIWNLQTKEIVQKLQGH 281
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 17/137 (12%)
Query: 211 LLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDG 270
L H + V V + P + L ++ +D + IW G+ I H + +W+ D
Sbjct: 22 LAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 271 SKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
+ L++ DK ++I + +G K + + S +F F+ Q +L
Sbjct: 81 NLLVSASDDKTLKIWDVSSG------------KCLKTLKGHSNYVFCCNFNP----QSNL 124
Query: 331 RAPDHLDEPIVMVELDT 347
DE + + ++ T
Sbjct: 125 IVSGSFDESVRIWDVKT 141
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 153 RINADH-ALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDL 211
R+ H A + GH V + W+P D +ASG D +V VW G P+
Sbjct: 228 RVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV---PLQTF 283
Query: 212 LYHQRRVGLVLWHPTAQNVLLTAG--SDNNVAIWNVGTGEIMIQIECHPDI 260
HQ V V W P NVL T G SD ++ IWNV +G + ++ H +
Sbjct: 284 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 334
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIAS--GSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
H+G V +AW P NV+A+ G+ D +++W + G + + +V +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAVDAHSQVCSI 337
Query: 222 LWHPTAQNVLLTAG-SDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
LW P + ++ G + N + IW T + +++ H V S + + DG+ + + D+
Sbjct: 338 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 281 KMRI 284
+R+
Sbjct: 398 TLRL 401
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 153 RINADH-ALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDL 211
R+ H A + GH V + W+P D +ASG D +V VW G P+
Sbjct: 217 RVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV---PLQTF 272
Query: 212 LYHQRRVGLVLWHPTAQNVLLTAG--SDNNVAIWNVGTGEIMIQIECHPDI 260
HQ V V W P NVL T G SD ++ IWNV +G + ++ H +
Sbjct: 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 323
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 11/124 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIAS--GSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
H+G V +AW P NV+A+ G+ D +++W + G + + +V +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA--------CLSAVDAHSQVCSI 326
Query: 222 LWHPTAQNVLLTAG-SDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
LW P + ++ G + N + IW T + +++ H V S + + DG+ + + D+
Sbjct: 327 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 281 KMRI 284
+R+
Sbjct: 387 TLRL 390
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 153 RINADH-ALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDL 211
R+ H A + GH V + W+P D +ASG D +V VW G P+
Sbjct: 137 RVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPSAPGEGGWV---PLQTF 192
Query: 212 LYHQRRVGLVLWHPTAQNVLLTAG--SDNNVAIWNVGTGEIMIQIECHPDI 260
HQ V V W P NVL T G SD ++ IWNV +G + ++ H +
Sbjct: 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV 243
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIAS--GSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
H+G V +AW P NV+A+ G+ D +++W + G + +V +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--------HSQVCSI 246
Query: 222 LWHPTAQNVLLTAG-SDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDK 280
LW P + ++ G + N + IW T + +++ H V S + + DG+ + + D+
Sbjct: 247 LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 281 KMRI 284
+R+
Sbjct: 307 TLRL 310
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V+ +A++P D + ASG D VKVW + + TLT +R V V
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD 191
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
++P ++TA D + IW+ T + +E H V A ++ +++ +D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 282 MRIINPRTGAIE-------EEAVCHEGSKATRAIYLKSGLIFTTGFSKMS 324
++I N T +E E + C R Y+ SG F GF+ +S
Sbjct: 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG--FDNGFTVLS 299
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
+I SGSED +K+W + +TL + R + HPT + + +G DN
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGL-------ERSWCIATHPTGRKNYIASGFDNG 294
Query: 240 VAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
+ ++G E + ++ +V+S N S + T
Sbjct: 295 FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN- 286
+N ++ D + ++N TGE ++ E HPD + S + + +L+ D +++ N
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 287 PRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
A+E+ HE A K F +G + + +SL
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 12/140 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+SP DD IAS S+D VK+W +G + +TLT H V V
Sbjct: 424 GHSSSVWGVAFSP-DDQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVRGVA 474
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P Q + +A D V +WN G+++ + H V +++ DG + + DK +
Sbjct: 475 FSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 283 RIINPRTGAIEEEAVCHEGS 302
++ N R G + + H S
Sbjct: 533 KLWN-RNGQLLQTLTGHSSS 551
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+SP D IAS S+D VK+W +G + +TLT H V V
Sbjct: 137 GHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVWGVA 187
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P Q + +A D V +WN G+++ + H V +++ DG + + DK +
Sbjct: 188 FSPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 283 RIINPRTGAIEEEAVCHEGS 302
++ N R G + + H S
Sbjct: 246 KLWN-RNGQLLQTLTGHSSS 264
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+SP D IAS S+D VK+W +G + +TLT H V V
Sbjct: 383 GHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVWGVA 433
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P Q + +A D V +WN G+++ + H V +++ DG + + DK +
Sbjct: 434 FSPDDQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 283 RIINPRTGAIEEEAVCHEGS 302
++ N R G + + H S
Sbjct: 492 KLWN-RNGQLLQTLTGHSSS 510
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+SP D IAS S+D VK+W +G + +TLT H V V
Sbjct: 465 GHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVRGVA 515
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P Q + +A D V +WN G+++ + H V+ +++ DG + + DK +
Sbjct: 516 FSPDGQTIA-SASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTV 573
Query: 283 RIIN 286
++ N
Sbjct: 574 KLWN 577
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 12/139 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H V +A+SP D IAS S+D VK+W +G + +TLT H V V +
Sbjct: 15 HSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVWGVAF 65
Query: 224 HPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMR 283
P Q + +A D V +WN G+++ + H V +++ DG + + DK ++
Sbjct: 66 SPDGQTI-ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 284 IINPRTGAIEEEAVCHEGS 302
+ N R G + + H S
Sbjct: 124 LWN-RNGQLLQTLTGHSSS 141
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+ P D IAS S+D VK+W +G + +TLT H V V
Sbjct: 260 GHSSSVNGVAFRP-DGQTIASASDDKTVKLWN-RNGQLLQTLTG-------HSSSVWGVA 310
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P Q + +A D V +WN G+ + + H V+ +++ DG + + DK +
Sbjct: 311 FSPDGQTI-ASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 283 RIINPRTGAIEEEAVCHEGS 302
++ N R G + + H S
Sbjct: 369 KLWN-RNGQLLQTLTGHSSS 387
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V+ +A++P D + ASG D VKVW + + TLT +R V V
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD 191
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
++P ++TA D + IW+ T + +E H V A ++ +++ +D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 282 MRIINPRTGAIE-------EEAVCHEGSKATRAIYLKSGLIFTTGFSKMS 324
++I N T +E E + C R Y+ SG F GF+ +S
Sbjct: 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG--FDNGFTVLS 299
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
+I SGSED +K+W + +TL + R + HPT + + +G DN
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGL-------ERSWCIATHPTGRKNYIASGFDNG 294
Query: 240 VAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
+ ++G E + ++ +V+S N S + T
Sbjct: 295 FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAV 332
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN- 286
+N ++ D + ++N TGE ++ E HPD + S + + +L+ D +++ N
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 287 PRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
A+E+ HE A K F +G + + +SL
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V+ +A++P D + ASG D VKVW + + TLT +R V V
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD 191
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
++P ++TA D + IW+ T + +E H V A ++ +++ +D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 282 MRIINPRTGAIE-------EEAVCHEGSKATRAIYLKSGLIFTTGFSKMS 324
++I N T +E E + C R Y+ SG F GF+ +S
Sbjct: 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG--FDNGFTVLS 299
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
+I SGSED +K+W + +TL + R + HPT + + +G DN
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGL-------ERSWCIATHPTGRKNYIASGFDNG 294
Query: 240 VAIWNVGTGE 249
+ ++G E
Sbjct: 295 FTVLSLGNDE 304
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN- 286
+N ++ D + ++N TGE ++ E HPD + S + + +L+ D +++ N
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 287 PRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
A+E+ HE A K F +G + + +SL
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 16/170 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V+ +A++P D + ASG D VKVW + + TLT +R V V
Sbjct: 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVD 191
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
++P ++TA D + IW+ T + +E H V A ++ +++ +D
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT 251
Query: 282 MRIINPRTGAIE-------EEAVCHEGSKATRAIYLKSGLIFTTGFSKMS 324
++I N T +E E + C R Y+ SG F GF+ +S
Sbjct: 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG--FDNGFTVLS 299
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
+I SGSED +K+W + +TL + R + HPT + + +G DN
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGL-------ERSWCIATHPTGRKNYIASGFDNG 294
Query: 240 VAIWNVGTGE 249
+ ++G E
Sbjct: 295 FTVLSLGNDE 304
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN- 286
+N ++ D + ++N TGE ++ E HPD + S + + +L+ D +++ N
Sbjct: 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW 126
Query: 287 PRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSL 330
A+E+ HE A K F +G + + +SL
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH VL +A+SP D+ I SG D ++VW + G TL+ H V V
Sbjct: 107 GHTKDVLSVAFSP-DNRQIVSGGRDNALRVWNVK-GECMHTLSRGA-----HTDWVSCVR 159
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
+ P+ V+++ G DN V +W++ TG ++ ++ H + V S + + DGS ++ KD
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGV 219
Query: 282 MRIINPRTG-AIEEEA 296
R+ + G A+ E A
Sbjct: 220 ARLWDLTKGEALSEMA 235
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V I ++ D + S SED V++VW G V L HQ V
Sbjct: 1008 GHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTG--------DYVFLQAHQETVKD-- 1056
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ + LL+ D V +WNV TG I CH V S + + D +K +T DK
Sbjct: 1057 FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 283 RIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTG 319
+I + + E H G A L G++ TG
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATG 1152
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 200 ISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPD 259
+SR + P D +YH + Q + + G+D + ++ TGE ++ I+ H D
Sbjct: 613 LSRLVVRPHTDAVYH------ACFSQDGQRIA-SCGADKTLQVFKAETGEKLLDIKAHED 665
Query: 260 IVYSASWNWDGSKLLTTCKDKKMRIINPRTGAI--------EEEAVCHEGSKATRAIYLK 311
V +++ D S + T DKK++I + TG + E+ CH +K+
Sbjct: 666 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH----- 720
Query: 312 SGLIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDS 371
L+ TG + L+ D + +N V + PD L+ C D
Sbjct: 721 --LLLATG-----SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADG 772
Query: 372 VIRYFEITA 380
+R +++ +
Sbjct: 773 TLRLWDVRS 781
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ H+ VL A+S DD+ IA+ S D VK+W G + T E H +V
Sbjct: 660 IKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE-------HSEQVNC 711
Query: 221 VLWHPTAQNVLLTAGS-DNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKD 279
+ + ++LL GS D + +W++ E + H + V ++ D L + D
Sbjct: 712 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 280 KKMRIINPRTG 290
+R+ + R+
Sbjct: 772 GTLRLWDVRSA 782
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
++A+GS D +K+W + T+ H V + P + +L + +D
Sbjct: 722 LLATGSNDFFLKLWDLNQKECRNTM-------FGHTNSVNHCRFSPDDE-LLASCSADGT 773
Query: 240 VAIWNVGTG---------EIMIQIECHPD----IVYSASWNWDGSKLLTTCKDKKMRIIN 286
+ +W+V + + E P+ IV SW+ DG K++ K+K +
Sbjct: 774 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI 833
Query: 287 PRTGAIEEEAVCHEGSKAT 305
+G + E H G +T
Sbjct: 834 HTSGLLAE---IHTGHHST 849
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V I ++ D + S SED V++VW G V L HQ V
Sbjct: 1001 GHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTG--------DYVFLQAHQETVKD-- 1049
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ + LL+ D V +WNV TG I CH V S + + D +K +T DK
Sbjct: 1050 FRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 283 RIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTG 319
+I + + E H G A L G++ TG
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATG 1145
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 200 ISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPD 259
+SR + P D +YH + Q + + G+D + ++ TGE ++ I+ H D
Sbjct: 606 LSRLVVRPHTDAVYH------ACFSQDGQRIA-SCGADKTLQVFKAETGEKLLDIKAHED 658
Query: 260 IVYSASWNWDGSKLLTTCKDKKMRIINPRTGAI--------EEEAVCHEGSKATRAIYLK 311
V +++ D S + T DKK++I + TG + E+ CH +K+
Sbjct: 659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNH----- 713
Query: 312 SGLIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDS 371
L+ TG + L+ D + +N V + PD L+ C D
Sbjct: 714 --LLLATG-----SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS-ADG 765
Query: 372 VIRYFEITA 380
+R +++ +
Sbjct: 766 TLRLWDVRS 774
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ H+ VL A+S DD+ IA+ S D VK+W G + T E H +V
Sbjct: 653 IKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDE-------HSEQVNC 704
Query: 221 VLWHPTAQNVLLTAGS-DNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKD 279
+ + ++LL GS D + +W++ E + H + V ++ D L + D
Sbjct: 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764
Query: 280 KKMRIINPRTG 290
+R+ + R+
Sbjct: 765 GTLRLWDVRSA 775
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
++A+GS D +K+W + T+ H V + P + +L + +D
Sbjct: 715 LLATGSNDFFLKLWDLNQKECRNTM-------FGHTNSVNHCRFSPDDE-LLASCSADGT 766
Query: 240 VAIWNVGTG---------EIMIQIECHPD----IVYSASWNWDGSKLLTTCKDKKMRIIN 286
+ +W+V + + E P+ IV SW+ DG K++ K+K +
Sbjct: 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI 826
Query: 287 PRTGAIEEEAVCHEGSKAT 305
+G + E H G +T
Sbjct: 827 HTSGLLAE---IHTGHHST 842
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 64/141 (45%), Gaps = 6/141 (4%)
Query: 146 STAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLT 205
S P G++ + GH V D++W +++ S ++D + +W S+
Sbjct: 208 SAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSK--- 264
Query: 206 EPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQ-IECHPDIVYSA 264
P + H V + ++P ++ +L T +D VA+W++ ++ + E H D ++
Sbjct: 265 -PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 265 SWNWDGSKLLTTC-KDKKMRI 284
W+ +L + D+++ +
Sbjct: 324 QWSPHNETILASSGTDRRLNV 344
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRT---LTEPVVDLLY----HQR 216
HK + + WSPH++ ++AS D + VW + G ++ + +LL+ H
Sbjct: 316 HKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Query: 217 RVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
++ W+P V+ + DN + +W +
Sbjct: 376 KISDFSWNPNEPWVICSVSEDNIMQVWQMA 405
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQI 195
GGH + D +W+P++ VI S SED +++VWQ+
Sbjct: 371 GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
PS +G N D L GH+ ++W+P+ + S S+D + +W I +
Sbjct: 158 PSKPDPSGECNPDLRL-RGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV 216
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV 245
+ H V V WH +++ + D + IW+
Sbjct: 217 VDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDT 257
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEPVVDLLYHQRRVGL 220
H+G V + P + +IA+ + V V+ + P P + L HQ+
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYG 182
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGT----GEIM---IQIECHPDIVYSASWNWDGSKL 273
+ W+P LL+A D+ + +W++ G+++ H +V SW+ L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 274 L-TTCKDKKMRIINPRT 289
+ D+K+ I + R+
Sbjct: 243 FGSVADDQKLMIWDTRS 259
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL---TEPVVDLLYHQRR 217
+ GH+ PV + + P +V+ S SED +KVW G RTL T+ V D+ +
Sbjct: 104 LSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-- 160
Query: 218 VGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
+ +L + +D + +W+ E + + H V S S +G +++
Sbjct: 161 ---------SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 278 KDKKMRIINPRTG 290
+DK +++ +TG
Sbjct: 212 RDKTIKMWEVQTG 224
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 26/144 (18%)
Query: 176 HDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQN------ 229
D +IAS S D V+VW + E +L H+ V + W P +
Sbjct: 244 QDGTLIASCSNDQTVRVWVVA-------TKECKAELREHRHVVECISWAPESSYSSISEA 296
Query: 230 -------------VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTT 276
LL+ D + +W+V TG ++ + H + V ++ G +L+
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 356
Query: 277 CKDKKMRIINPRTGAIEEEAVCHE 300
DK +R+ + + + HE
Sbjct: 357 ADDKTLRVWDYKNKRCMKTLNAHE 380
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQ-RRV 218
++ GH+ +L ++WSP D ++A+ S D VK+W + R + ++ L H ++
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV------RRASGCLITLDQHNGKKS 234
Query: 219 GLVLWHPTAQN-------------VLLTAGSDNNVAIWNVGTGE 249
V TA N LLT G+DN + +WN GE
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 81/225 (36%), Gaps = 61/225 (27%)
Query: 154 INADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQ---------------IPDG 198
I DH V H+ V + W PHD + S S D +KVW +
Sbjct: 90 IGRDHPDV--HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSH 147
Query: 199 GISRTLTE----------PVVDLL------------YHQRRVGLVLWHPTAQNVLLTAGS 236
+S T+ P V L H++ + V W P +L TA +
Sbjct: 148 HMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA 207
Query: 237 DNNVAIWNVGTGE-IMIQIECH----PDIVYSAS-----------WNWDGSKLLTTCKDK 280
D+ V +W+V +I ++ H V SA+ + DG LLT D
Sbjct: 208 DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN 267
Query: 281 KMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSE 325
+MR+ N G E + + G + K GL FT SE
Sbjct: 268 RMRLWNSSNG---ENTLVNYGKVCNNS---KKGLKFTVSCGCSSE 306
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 31/218 (14%)
Query: 199 GISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
+SR + P D +YH + Q + + G+D + ++ TGE +++I+ H
Sbjct: 611 NLSRLVVRPHTDAVYH------ACFSEDGQRIA-SCGADKTLQVFKAETGEKLLEIKAHE 663
Query: 259 DIVYSASWNWDGSKLLTTCKDKKMRIINPRTGAI--------EEEAVCHEGSKATRAIYL 310
D V +++ D + T DKK++I N TG + E+ CH + +
Sbjct: 664 DEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHH---- 719
Query: 311 KSGLIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGD 370
L+ TG S + + L + + +N V + PD L+ C D
Sbjct: 720 ---LLLATGSSDCFLKLWDLNQKECRN-----TMFGHTNSVNHCRFSPDDKLLASCS-AD 770
Query: 371 SVIRYFEITA--EPPFVHYINTF-QTPDPQRGIGMMPK 405
++ ++ T+ E ++ F DPQ + ++ K
Sbjct: 771 GTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVK 808
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 19/158 (12%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVW--QIPDGGISRTLTEPVVD--LLYHQRRVG 219
HK V I ++ D+ + S S+D ++VW Q+ R E V D LL + R
Sbjct: 1008 HKKTVWHIQFTA-DEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSR--- 1063
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKD 279
LL+ D V +WN+ TG CH V S + D +K +T D
Sbjct: 1064 -----------LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSAD 1112
Query: 280 KKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFT 317
K +I + E H G A + S L+ T
Sbjct: 1113 KTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLAT 1150
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ H+ VL A+S DD IA+ S D VK+W G + T E H +V
Sbjct: 659 IKAHEDEVLCCAFST-DDRFIATCSVDKKVKIWNSMTGELVHTYDE-------HSEQVNC 710
Query: 221 VLWHPTAQNVLLTAG-SDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
+ ++ ++LL G SD + +W++ E + H + V ++ D KLL +C
Sbjct: 711 CHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DKLLASC 767
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H+G VL S HD +S S D K+W S L P+ +L H V +
Sbjct: 1090 HQGTVLSCDIS-HDATKFSSTSADKTAKIW-------SFDLLLPLHELRGHNGCVRCSAF 1141
Query: 224 HPTAQNVLLTAGSDN-NVAIWNVGTGEIM 251
+ + LL G DN + IWNV GE++
Sbjct: 1142 --SVDSTLLATGDDNGEIRIWNVSNGELL 1168
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 174 SPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWH---PTAQNV 230
SPH IA G E+ +++ ++ + I ++ + H++ V WH +
Sbjct: 976 SPHL-QYIAFGDENGAIEILELVNNRIFQSRFQ-------HKKTV----WHIQFTADEKT 1023
Query: 231 LLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTG 290
L+++ D + +WN + + + H + V S+LL+ D +++ N TG
Sbjct: 1024 LISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRL-LKNSRLLSWSFDGTVKVWNIITG 1081
Query: 291 AIEEEAVCHEGS 302
E++ VCH+G+
Sbjct: 1082 NKEKDFVCHQGT 1093
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 49/114 (42%), Gaps = 21/114 (18%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNN 239
++A+GS DC +K+W + T + H V + P + +L + +D
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNT-------MFGHTNSVNHCRFSPDDK-LLASCSADGT 772
Query: 240 VAIWN---------VGTGEIMIQIECHPD----IVYSASWNWDGSKLLTTCKDK 280
+ +W+ + + + +E + IV SW+ DG++++ K+K
Sbjct: 773 LKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK 826
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 80/192 (41%), Gaps = 34/192 (17%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V + + DD I S S D +KVW RTL H+R + +
Sbjct: 254 GHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-------HKRGIACLQ 303
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ ++++ SDN + +W++ G + +E H ++V +D ++++ D K+
Sbjct: 304 YR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKI 358
Query: 283 RI------INPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKM----SERQYSLRA 332
++ ++PR A G+ R + SG +F F + S ++
Sbjct: 359 KVWDLVAALDPRAPA---------GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 409
Query: 333 PDHLDEPIVMVE 344
D L++P E
Sbjct: 410 WDFLNDPAAQAE 421
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 176 HDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
+DD I SG D +K+W R LT G VL + V++T
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECKRILTG----------HTGSVLCLQYDERVIITGS 190
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
SD+ V +W+V TGE++ + H + V +N ++T KD+ + +
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAV 237
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 139 LSILPPPSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG 198
+SI +A T ++ A++ GH+ V +AWS +D +A+ S D V +W+ +
Sbjct: 82 VSIWAKEESADRTFEMDL-LAIIEGHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDES 139
Query: 199 GISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWN 244
G E + L H + V V+WHP+ + +L ++ D+ V IW
Sbjct: 140 GEEY---ECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWK 181
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 79/197 (40%), Gaps = 24/197 (12%)
Query: 123 VKEFKEEIRKLKSQQALSILPPPSTAPNTGRINA---DHALVG-----GHKGPVLDIAWS 174
+K +KE+I Q IL ST ++ D L+ HK + +AW
Sbjct: 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWR 67
Query: 175 PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLY-HQRRVGLVLWHPTAQNVLLT 233
PH +++A+GS D V +W + RT ++ ++ H+ V V W L T
Sbjct: 68 PH-TSLLAAGSFDSTVSIWAKEESA-DRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLAT 124
Query: 234 AGSDNNVAIWNVGTGEIMIQIEC------HPDIVYSASWNWDGSKLLTTCKDKKMRIINP 287
D +V IW T E + EC H V W+ + L ++ D +RI
Sbjct: 125 CSRDKSVWIWE--TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD 182
Query: 288 RTGAIEEEAVC--HEGS 302
E AV HEG+
Sbjct: 183 YDDDWECVAVLNGHEGT 199
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 180 VIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGS-DN 238
++A+GS D +K+ + TL + V+D H++ + V W P LL AGS D+
Sbjct: 26 ILATGSTDRKIKLVSVKYDDF--TLID-VLDETAHKKAIRSVAWRP--HTSLLAAGSFDS 80
Query: 239 NVAIW-------NVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTGA 291
V+IW +++ IE H + V +W+ DG L T +DK + I
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 292 IEEE--AVCHEGSKATR-AIYLKSGLIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTS 348
E E +V E S+ + I+ S + + + R + D+ D+ + L+
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW----KDYDDDWECVAVLNGH 196
Query: 349 NGVMFPL-YDPDTNLVYLC-GKGDSVIRYFE 377
G ++ +D + LC G DS +R ++
Sbjct: 197 EGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 142 LPPPSTAPNTGRINADH-------ALVGGHKGPVLDIAWSPHDDNV-----IASGSEDCV 189
L S+ +T RI D+ A++ GH+G V WS D + SGS+D
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDST 222
Query: 190 VKVWQIPDGGISRTLTEPVVDLLY---HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
V+VW+ G E V + + H+R+V V W ++ + G+D +A++
Sbjct: 223 VRVWKYM-GDDEDDQQEWVCEAILPDVHKRQVYNVAW--GFNGLIASVGADGVLAVYEEV 279
Query: 247 TGEIMI---QIECH 257
GE + + CH
Sbjct: 280 DGEWKVFAKRALCH 293
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 156 ADHAL--VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLY 213
A+H + + GH V +AW D +ASG D VV++W +R+ + P
Sbjct: 206 ANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWD------ARS-SIPKFTKTN 257
Query: 214 HQRRVGLVLWHPTAQNVLLTAGS--DNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGS 271
H V V W P N+L T G D + WN TG + ++ + S W+
Sbjct: 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT-SLIWSPHSK 316
Query: 272 KLLTT--CKDKKMRIINPRTGAIEEEA--VCHEGSKATRAIYLK---SGLIFTTGFSKMS 324
++++T D + I + + + ++ H+ TR +Y G I +T S +
Sbjct: 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD----TRVLYSALSPDGRILSTAASDEN 372
Query: 325 ERQYSLRAPDHLDEPIVMVELDTSN 349
+ + + DH+ PI + + +S+
Sbjct: 373 LKFWRVYDGDHVKRPIPITKTPSSS 397
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 168 VLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA 227
+ + +SP D +A+G+ED ++++W I + I V+ L H++ + + + P+
Sbjct: 126 IRSVCFSP-DGKFLATGAEDRLIRIWDIENRKI-------VMILQGHEQDIYSLDYFPSG 177
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINP 287
L++ D V IW++ TG+ + + + A DG + D+ +R+ +
Sbjct: 178 DK-LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 288 RTGAIEEE 295
TG + E
Sbjct: 237 ETGFLVER 244
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 74/186 (39%), Gaps = 20/186 (10%)
Query: 168 VLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA 227
V +A SP D IA+GS D V+VW G + L H+ V V++
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 228 QNVLLTAGSDNNVAIWNV------------GTGEIMIQIECHPDIVYSASWNWDGSKLLT 275
Q+V ++ D +V +WN+ +G + H D V S + + +L+
Sbjct: 269 QSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 327
Query: 276 TCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGL-----IFTTGFSKMSER--QY 328
KD+ + + ++G H S + A+ S L +F TG R +Y
Sbjct: 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387
Query: 329 SLRAPD 334
AP+
Sbjct: 388 KKIAPN 393
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV + W+ P ++AS S D V +W+ +G S+ V H V V
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-----HSASVNSV 105
Query: 222 LWHPTAQN-VLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSASW 266
W P +LL A SD V++ GT +I I+ H V SASW
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW 153
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 181 IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA--QNVLLTAGSDN 238
+G D +VK+W+ + L L H V V W PT ++ L + D
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 239 NVAIWNVGTGE-----IMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
IW + +++ E PD+++ ASW+ G+ L + D K+ +
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVD----LLY----H 214
HK + + WSPH++ ++AS D + VW + G ++ TE D LL+ H
Sbjct: 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-TEDAEDGPPELLFIHGGH 377
Query: 215 QRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
++ W+P ++ + DN + +W +
Sbjct: 378 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
V H V ++++P+ + ++A+GS D V +W + R L + H+ +
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHSFESHKDEIFQ 326
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVG 246
V W P + +L ++G+D + +W++
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLS 352
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG 198
GGH + D +W+P++ +I S SED +++VWQ+ +
Sbjct: 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
PS +G D L GH+ ++W+P+ + + S S+D + +W I +
Sbjct: 162 PSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIW---NVGTGEIMIQIECHPDIV 261
+ H V V WH +++ + D + IW N T + ++ H V
Sbjct: 221 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280
Query: 262 YSASWN 267
S+N
Sbjct: 281 NCLSFN 286
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEPVVDLLYHQRRVG 219
H+G V + P + VIA+ + V V+ + P +P + L HQ+
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 185
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNVG 246
+ W+P LL+A D+ + +W++
Sbjct: 186 GLSWNPNLNGYLLSASDDHTICLWDIN 212
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVD----LLY----H 214
HK + + WSPH++ ++AS D + VW + G ++ TE D LL+ H
Sbjct: 321 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-TEDAEDGPPELLFIHGGH 379
Query: 215 QRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
++ W+P ++ + DN + +W +
Sbjct: 380 TAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 411
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
V H V ++++P+ + ++A+GS D V +W + R L + H+ +
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHSFESHKDEIFQ 328
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVG 246
V W P + +L ++G+D + +W++
Sbjct: 329 VQWSPHNETILASSGTDRRLHVWDLS 354
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG 198
GGH + D +W+P++ +I S SED +++VWQ+ +
Sbjct: 377 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
PS +G D L GH+ ++W+P+ + + S S+D + +W I +
Sbjct: 164 PSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 222
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIW---NVGTGEIMIQIECHPDIV 261
+ H V V WH +++ + D + IW N T + ++ H V
Sbjct: 223 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 282
Query: 262 YSASWN 267
S+N
Sbjct: 283 NCLSFN 288
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEPVVDLLYHQRRVG 219
H+G V + P + VIA+ + V V+ + P +P + L HQ+
Sbjct: 128 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY 187
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNVG 246
+ W+P LL+A D+ + +W++
Sbjct: 188 GLSWNPNLNGYLLSASDDHTICLWDIN 214
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 163 GHKGPVLDIAWSPH-DDNVIASGSEDCVVKVWQIPDGGISRTL---TEPVVDLLYHQRRV 218
GH G V WS DN+I SGS D +KVW G TL T V + H++RV
Sbjct: 157 GHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 219 GLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCK 278
++ D + +W++ TG+ + + H V +DG ++++
Sbjct: 213 -------------VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV--QYDGRRVVSGAY 257
Query: 279 DKKMRIINPRTGAIEEEAVCHEGSKATRAIY 309
D +++ +P E E H T +Y
Sbjct: 258 DFMVKVWDP-----ETETCLHTLQGHTNRVY 283
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 178 DNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSD 237
DN++ SG+ D VK+W I G +TL P HQ V + ++ +N ++T+ D
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPN----KHQSAVTCLQFN---KNFVITSSDD 381
Query: 238 NNVAIWNVGTGEIM 251
V +W++ TGE +
Sbjct: 382 GTVKLWDLKTGEFI 395
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 179 NVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDN 238
N I SGS+D +KVW G RTL + Q R N++++ +D
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----------DNIIISGSTDR 179
Query: 239 NVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTG 290
+ +WN TGE + + H V + ++++ +D +R+ + TG
Sbjct: 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 181 IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNV 240
+ SGS D ++VW + G TLT HQ L N+L++ +D+ V
Sbjct: 292 VVSGSLDTSIRVWDVETGNCIHTLTG-------HQ---SLTSGMELKDNILVSGNADSTV 341
Query: 241 AIWNVGTGEIMIQIEC---HPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTG 290
IW++ TG+ + ++ H V +N + ++T+ D +++ + +TG
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVD----LLY----HQ 215
HK + + WSPH++ ++AS D + VW + G ++ TE D LL+ H
Sbjct: 324 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS-TEDAEDGPPELLFIHGGHT 382
Query: 216 RRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
++ W+P ++ + DN + +W +
Sbjct: 383 AKISDFSWNPNEPWIICSVSEDNIMQVWQMA 413
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
V H V ++++P+ + ++A+GS D V +W + R L + H+ +
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHSFESHKDEIFQ 330
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNV 245
V W P + +L ++G+D + +W++
Sbjct: 331 VQWSPHNETILASSGTDRRLHVWDL 355
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPD 197
GGH + D +W+P++ +I S SED +++VWQ+ +
Sbjct: 379 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
PS +G D L GH+ ++W+P+ + + S S+D + +W I +
Sbjct: 166 PSKPEPSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 224
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV 245
+ H V V WH +++ + D + IW+
Sbjct: 225 IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 265
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEPVVDLLYHQRRVGL 220
H+G V + P + VIA+ + V V+ + P +P + L HQ+
Sbjct: 131 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 190
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNV 245
+ W+P LL+A D+ + +W++
Sbjct: 191 LSWNPNLNGYLLSASDDHTICLWDI 215
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVG 219
LV H V ++++P+ + ++A+GS D V +W + R L + H+ +
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHTFESHKDEIF 323
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNV 245
V W P + +L ++G+D + +W++
Sbjct: 324 QVHWSPHNETILASSGTDRRLNVWDL 349
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPV---VDLLY----HQR 216
HK + + WSPH++ ++AS D + VW + G ++ + +LL+ H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 217 RVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
++ W+P V+ + DN + IW +
Sbjct: 378 KISDFSWNPNEPWVICSVSEDNIMQIWQMA 407
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG 198
GGH + D +W+P++ VI S SED ++++WQ+ +
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
P+ +G N D L GH+ ++W+ + + S S+D V +W I G +
Sbjct: 160 PAKPDPSGECNPDLRL-RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI 218
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV 245
+ H V V WH +++ + D + IW+
Sbjct: 219 VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDT 259
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 151 TGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEP 207
TG+I + + H+G V + P + ++IA+ + V V+ + P P
Sbjct: 114 TGKIECEIKI--NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNP 171
Query: 208 VVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI-------ECHPDI 260
+ L HQ+ + W+ LL+A D+ V +W++ G +I H +
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV 231
Query: 261 VYSASWNWDGSKLL-TTCKDKKMRIINPRTG 290
V +W+ L + D+K+ I + R+
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSN 262
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVG 219
LV H V ++++P+ + ++A+GS D V +W + R L + H+ +
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL------RNLKLKLHTFESHKDEIF 323
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNV 245
V W P + +L ++G+D + +W++
Sbjct: 324 QVHWSPHNETILASSGTDRRLNVWDL 349
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPV---VDLLY----HQR 216
HK + + WSPH++ ++AS D + VW + G ++ + +LL+ H
Sbjct: 318 HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Query: 217 RVGLVLWHPTAQNVLLTAGSDNNVAIW 243
++ W+P V+ + DN IW
Sbjct: 378 KISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 162 GGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQ 194
GGH + D +W+P++ VI S SED + ++WQ
Sbjct: 373 GGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 145 PSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
P+ +G N D L GH+ ++W+ + + S S+D V +W I G +
Sbjct: 160 PAKPDPSGECNPDLRL-RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKI 218
Query: 205 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV 245
+ H V V WH +++ + D + IW+
Sbjct: 219 VDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDT 259
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 151 TGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVW---QIPDGGISRTLTEP 207
TG+I + + H+G V + P + ++IA+ + V V+ + P P
Sbjct: 114 TGKIECEIKI--NHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNP 171
Query: 208 VVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI-------ECHPDI 260
+ L HQ+ + W+ LL+A D+ V +W++ G +I H +
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAV 231
Query: 261 VYSASWNWDGSKLL-TTCKDKKMRIINPRTG 290
V +W+ L + D+K+ I + R+
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSN 262
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV + W+ P ++AS S D V +W+ +G S+ V H V V
Sbjct: 53 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-----HSASVNSV 107
Query: 222 LWHPTAQN-VLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSASW 266
W P +LL A SD V++ GT +I I+ H V SASW
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW 155
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 181 IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA--QNVLLTAGSDN 238
+G D +VK+W+ + L L H V V W PT ++ L + D
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 239 NVAIWNVGTGE-----IMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
IW + +++ E PD+++ ASW+ G+ L + D K+ +
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 282
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVG 219
L GH+ V +AWSP N +AS S D +W+ E V L H+ V
Sbjct: 56 LSEGHQRTVRKVAWSPC-GNYLASASFDATTCIWKKNQDDF-----ECVTTLEGHENEVK 109
Query: 220 LVLWHPTAQNVLLTAGSDNNVAIWNV 245
V W P+ N+L T D +V +W V
Sbjct: 110 SVAWAPSG-NLLATCSRDKSVWVWEV 134
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 171 IAWSPHDDNVIASGSEDCVVKVWQIP-DGGISRT-LTEPVVDLLYHQRRVGLVLWHPTAQ 228
+AW+P ++AS D +++W D I ++ L+E HQR V V W P
Sbjct: 22 LAWNPAG-TLLASCGGDRRIRIWGTEGDSWICKSVLSEG------HQRTVRKVAWSPCG- 73
Query: 229 NVLLTAGSDNNVAIW--NVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
N L +A D IW N E + +E H + V S +W G+ L T +DK + +
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWV 131
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLY--HQRR 217
L G H + DIAW +A+ D ++V+Q + T + L+ H +
Sbjct: 247 LSGFHSRTIYDIAWC-QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305
Query: 218 VGLVLWHPTAQNVLLTAGSDNNVAIWN 244
V V W+P +L + D VA W
Sbjct: 306 VNCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV + W+ P ++AS S D V +W+ +G S+ V H V V
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-----HSASVNSV 105
Query: 222 LWHPTAQN-VLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSASW 266
W P +LL A SD V++ GT +I I+ H V SASW
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW 153
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 163 GHKGPVLDIAWSPHD--DNVIASGSEDCVVKVW-QIPDGGISRTLTEPVVDLLYHQRRVG 219
GH V D+AWSP + +AS S+D +W Q + G P L + +
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFP 254
Query: 220 LVLWHPT---AQNVLLTAGSDNNVAIW 243
VLW + + NVL +G DN V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 183 SGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA--QNVLLTAGSDNNV 240
+G D +VK+W+ + L L H V V W PT ++ + + D
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 241 AIWNVGTGE-----IMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
IW + +++ E PD+++ ASW+ G+ L + D K+ +
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV + W+ P ++AS S D V +W+ +G S+ V H V V
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-----HSASVNSV 105
Query: 222 LWHPTAQN-VLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSASW 266
W P +LL A SD V++ GT +I I+ H V SASW
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW 153
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 183 SGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA--QNVLLTAGSDNNV 240
+G D +VK+W+ + L L H V V W PT ++ L + D
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 241 AIWNVGTGE-----IMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
IW + +++ E PD+++ ASW+ G+ L + D K+ +
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 163 GHKGPVLDIAWSPHD--DNVIASGSEDCVVKVW-QIPDGGISRTLTEPVVDLLYHQRRVG 219
GH V D+AWSP + +AS S+D +W Q + G P L + +
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFP 254
Query: 220 LVLWHPT---AQNVLLTAGSDNNVAIW 243
VLW + + NVL +G DN V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV + W+ P ++AS S D V +W+ +G S+ V H V V
Sbjct: 51 GHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAV-----HSASVNSV 105
Query: 222 LWHPTAQN-VLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSASW 266
W P LL A SD V++ GT +I I+ H V SASW
Sbjct: 106 QWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW 153
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 163 GHKGPVLDIAWSPHD--DNVIASGSEDCVVKVW-QIPDGGISRTLTEPVVDLLYHQRRVG 219
GH V D+AWSP + AS S+D +W Q + G P L + +
Sbjct: 202 GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQG-------PWKKTLLKEEKFP 254
Query: 220 LVLWHPT---AQNVLLTAGSDNNVAIW 243
VLW + + NVL +G DN V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 183 SGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTA--QNVLLTAGSDNNV 240
+G D +VK+W+ + L L H V V W PT ++ + D
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLEST---LEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 241 AIWNVGTGE-----IMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRI 284
IW + +++ E PD+++ ASW+ G+ L + D K+ +
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL 280
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 163 GHKGPV--LDIAWSPHDDNVIASGSEDCVVKVWQIP-DGGISRTLTEPVVDLLYHQ---- 215
GH V LDI + I +GS D + VW++P + + E L++H
Sbjct: 201 GHNSTVRCLDIV-EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 216 -RRVGLVLWHPTA-------QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWN 267
VG++ H + N++++ DN + +W+V + + + H D +YS ++
Sbjct: 260 PYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYD 319
Query: 268 WDGSKLLTTCKDKKMRIINPRTGAI 292
+ + ++ D +RI + G +
Sbjct: 320 HERKRCISASXDTTIRIWDLENGEL 344
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 28/135 (20%)
Query: 142 LPPPSTAPNTGRINADHALV-----------GGHKGPVLDIAWSPHDDNVIASGSEDCVV 190
LP S+ P+ G D+ LV G +G + N++ SGS D +
Sbjct: 234 LPKESSVPDHGE-EHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTL 292
Query: 191 KVWQIPDGGISRTL---TEPVVDLLY-HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
VW + L T+ + +Y H+R+ ++A D + IW++
Sbjct: 293 IVWDVAQXKCLYILSGHTDRIYSTIYDHERKR------------CISASXDTTIRIWDLE 340
Query: 247 TGEIMIQIECHPDIV 261
GE+ ++ H +V
Sbjct: 341 NGELXYTLQGHTALV 355
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 163 GHKGPV--LDIAWSPHDDNVIASGSEDCVVKVWQIP-DGGISRTLTEPVVDLLYHQ---- 215
GH V LDI + I +GS D + VW++P + + E L++H
Sbjct: 201 GHNSTVRCLDIV-EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 216 -RRVGLVLWHPTA-------QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWN 267
VG++ H + N++++ DN + +W+V + + + H D +YS ++
Sbjct: 260 PYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 319
Query: 268 WDGSKLLTTCKDKKMRIINPRTGAI 292
+ + ++ D +RI + G +
Sbjct: 320 HERKRCISASMDTTIRIWDLENGEL 344
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 28/135 (20%)
Query: 142 LPPPSTAPNTGRINADHALV-----------GGHKGPVLDIAWSPHDDNVIASGSEDCVV 190
LP S+ P+ G D+ LV G +G + + N++ SGS D +
Sbjct: 234 LPKESSVPDHGE-EHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 191 KVWQIPDGGISRTL---TEPVVDLLY-HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
VW + L T+ + +Y H+R+ ++A D + IW++
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKR------------CISASMDTTIRIWDLE 340
Query: 247 TGEIMIQIECHPDIV 261
GE+M ++ H +V
Sbjct: 341 NGELMYTLQGHTALV 355
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH VL +A+S D+ I S S D +K+W G T++E H+ V V
Sbjct: 470 GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEG---HRDWVSCVR 524
Query: 223 WHP-TAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
+ P T Q +++A D V +WN+ ++ + H V + + + DGS + KD
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV 584
Query: 282 MRIINPRTG----AIEEEAVCH 299
+ + + G ++E +V H
Sbjct: 585 VLLWDLAEGKKLYSLEANSVIH 606
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 30/143 (20%)
Query: 161 VGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGL 220
+ GH G V +A SP D ++ ASG +D VV +W + +G +L V +
Sbjct: 557 LAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV--------IHA 607
Query: 221 VLWHPTAQNVLLTAGSDNNVAIWNVGTGEIM--IQIECHPD---------------IVYS 263
+ + P L A +++ + IW++ + I+ ++++ + ++Y
Sbjct: 608 LCFSP--NRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 264 ASWNW--DGSKLLTTCKDKKMRI 284
S NW DGS L + D +R+
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRV 688
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
G + P+ + P+ +V+A+G +D ++ +W + G T PV L H+ + V
Sbjct: 234 GDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG------TMPVSLLKAHEAEMWEVH 287
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGT 247
+HP+ L T D ++ W+ T
Sbjct: 288 FHPSNPEHLFTCSEDGSLWHWDAST 312
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 9/120 (7%)
Query: 190 VKVWQIPDGGISRTLTEPVVDLLYHQRRVGL--VLWHPTAQNVLLTAGSDNNVAIWNVGT 247
+K+W G EP L RV L V HP Q+V+ T G D ++IW+V
Sbjct: 214 LKIWDFRQQG-----NEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
Query: 248 GEIMIQ-IECHPDIVYSASWNWDGSKLLTTC-KDKKMRIINPRTGAIEEEAVCHEGSKAT 305
G + + ++ H ++ ++ + L TC +D + + T E+ ++ H+G +++
Sbjct: 269 GTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSS 328
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 163 GHKGPVLDIAWS-PHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+GPV +AW+ P N++AS S D V +W+ +G ++ H V V
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-----GHDSSVNSV 109
Query: 222 LWHPTAQNVLLTAGSDN 238
W P ++L GS +
Sbjct: 110 CWAPHDYGLILACGSSD 126
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 164 HKGPVLDIAWSPH---DDNVIASGSEDCVVKVWQIPDGG---ISRTLTEPVVDLLYHQRR 217
H V D+AW+P + IAS S+D V +W D S L D+++H
Sbjct: 211 HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH--- 267
Query: 218 VGLVLWHPTAQNVLLTAGSDNNVAIW 243
V W TA N+L +G DN V +W
Sbjct: 268 ---VSWSITA-NILAVSGGDNKVTLW 289
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 64/182 (35%), Gaps = 32/182 (17%)
Query: 163 GHKGPVLDIAWSPHDDNVI-ASGSEDCVVKV--------WQIPDGGISRTLTEPVVDLLY 213
GH V + W+PHD +I A GS D + + W++ + T+ V
Sbjct: 101 GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAP 160
Query: 214 HQRRVGLVLWHPTAQ-----NVLLTAGSDNNVAIWNV---GTGEIMIQIECHPDIVYSAS 265
L+ HP+ Q + G DN + +W G + ++E H D V +
Sbjct: 161 AVVPGSLID-HPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219
Query: 266 W--------------NWDGSKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLK 311
W + DG + TC D +P+ + V H T I
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV 279
Query: 312 SG 313
SG
Sbjct: 280 SG 281
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 164 HKGPVLDIAWSPHDDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYH-QRRVGLV 221
H V ++WSP DNV +A+GS D V VW + ++ P++ H V V
Sbjct: 535 HTAKVACVSWSP--DNVRLATGSLDNSVIVWNM-----NKPSDHPIIIKGAHAMSSVNSV 587
Query: 222 LWHPTAQNVLLTAGSDNNVAIWNV 245
+W + +++AG D+N+ WNV
Sbjct: 588 IW--LNETTIVSAGQDSNIKFWNV 609
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 181 IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNV 240
I SGS+D V +++ P T E H + V V ++P ++ + G D +
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGE-------HTKFVHSVRYNPDG-SLFASTGGDGTI 214
Query: 241 AIWNVGTGEIMIQIE-------CHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTGAIE 293
++N G E H V+ +W+ DG+K+ + DK ++I N T +E
Sbjct: 215 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274
Query: 294 E 294
+
Sbjct: 275 K 275
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 13/144 (9%)
Query: 166 GPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHP 225
GPV DI+W + A G + D G S +L R + V + P
Sbjct: 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG------NLTGQARAMNSVDFKP 157
Query: 226 TAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRII 285
+ +++ DN VAI+ + H V+S +N DGS +T D + +
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 286 N----PRTGAIEEEA---VCHEGS 302
N +TG E+++ V H GS
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGS 241
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTL 204
H G V + WSP D IAS S D +K+W + + +T+
Sbjct: 238 HSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTI 277
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V IA +P ++I S S D + +W++ + + P L H V V+
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--PQRALRGHSHFVSDVV 93
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
Q L+ D + +W++ TG + H V S +++ D ++++ +DK +
Sbjct: 94 ISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 283 RIIN 286
++ N
Sbjct: 153 KLWN 156
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH VL +A+S D+ I SGS D +K+W + + + V H V V
Sbjct: 126 GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVR 178
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
+ P + N ++++ G D V +WN+ ++ H + + + + DGS + KD +
Sbjct: 179 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 238
Query: 282 MRIINPRTG 290
+ + G
Sbjct: 239 AMLWDLNEG 247
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V IA +P ++I S S D + +W++ + + P L H V V+
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--PQRALRGHSHFVSDVV 70
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
Q L+ D + +W++ TG + H V S +++ D ++++ +DK +
Sbjct: 71 ISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 283 RIIN 286
++ N
Sbjct: 130 KLWN 133
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH VL +A+S D+ I SGS D +K+W + + + V H V V
Sbjct: 103 GHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWN------TLGVCKYTVQDESHSEWVSCVR 155
Query: 223 WHPTAQN-VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
+ P + N ++++ G D V +WN+ ++ H + + + + DGS + KD +
Sbjct: 156 FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ 215
Query: 282 MRIINPRTG 290
+ + G
Sbjct: 216 AMLWDLNEG 224
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTG---EIMIQIECHPDIVYSASWNWDG 270
H + + +HP N+LL+ D+ + +WN+ T I +E H D V SA ++ G
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 209
Query: 271 SKLLTTCKDKKMRI--INPR--TGAIEE 294
K+++ D +++ IN + AI+E
Sbjct: 210 EKIMSCGMDHSLKLWRINSKRMMNAIKE 237
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH + ++ + P D N++ S S+D +++W I + TL + H+ V
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSAD 204
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIE 255
+ + + ++ G D+++ +W + + +M I+
Sbjct: 205 YDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIK 236
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMI---QIECHPDIVYSASWNWDG 270
H + + +HP N+LL+ D+ + +WN+ T ++ +E H D V SA ++ G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 271 SKLLTTCKDKKMRI--INPR--TGAIEE 294
K+++ D +++ IN + AI+E
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH + ++ + P D N++ S S+D +++W I + TL + H+ V
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSAD 167
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIE 255
+ + + ++ G D+++ +W + + +M I+
Sbjct: 168 YDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH P+ + +SP D ++ + S+D +K++ + ++ TL+ H V V
Sbjct: 204 GHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSG-------HASWVLNVA 255
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P + +++ SD +V +W+VGT + H D V+ +N +GSK+++ D+++
Sbjct: 256 FCPDDTH-FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314
Query: 283 RIIN 286
I +
Sbjct: 315 HIYD 318
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTG---EIMIQIECHPDIVYSASWNWDG 270
H + + +HP N+LL+ D+ + +WN+ T I +E H D V SA ++ G
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173
Query: 271 SKLLTTCKDKKMRI--INPR--TGAIEE 294
K+++ D +++ IN + AI+E
Sbjct: 174 EKIMSCGMDHSLKLWRINSKRMMNAIKE 201
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH + ++ + P D N++ S S+D +++W I + TL + H+ V
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSAD 168
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIE 255
+ + + ++ G D+++ +W + + +M I+
Sbjct: 169 YDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIK 200
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTG---EIMIQIECHPDIVYSASWNWDG 270
H + + +HP N+LL+ D+ + +WN+ T I +E H D V SA ++ G
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 172
Query: 271 SKLLTTCKDKKMRI--INPR--TGAIEE 294
K+++ D +++ IN + AI+E
Sbjct: 173 EKIMSCGMDHSLKLWRINSKRMMNAIKE 200
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH + ++ + P D N++ S S+D +++W I + TL + H+ V
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSAD 167
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIE 255
+ + + ++ G D+++ +W + + +M I+
Sbjct: 168 YDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIK 199
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMI---QIECHPDIVYSASWNWDG 270
H + + +HP N+LL+ D+ + +WN+ T ++ +E H D V SA ++ G
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 168
Query: 271 SKLLTTCKDKKMRI--INPR--TGAIEE 294
K+++ D +++ IN + AI+E
Sbjct: 169 EKIMSCGMDHSLKLWRINSKRMMNAIKE 196
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH + ++ + P D N++ S S+D +++W I + TL + H+ V
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ----TDTLVAIFGGVEGHRDEVLSAD 163
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIE 255
+ + + ++ G D+++ +W + + +M I+
Sbjct: 164 YDLLGEKI-MSCGMDHSLKLWRINSKRMMNAIK 195
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 210 DLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV----GTGEIMIQIECHPDIVYSAS 265
+L H+++V V +P L TA D V IW++ G + + H V +A
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAAC 303
Query: 266 WNWDGSKLLTTCKDKKMRI 284
++ DG++LLTT + ++R+
Sbjct: 304 FSPDGARLLTTDQKSEIRV 322
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H + + + P + +I+S S+D +K+W + DG RT L+ H+ V +
Sbjct: 134 AHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNPRT-------LIGHRATVTDIA 185
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTG 248
+NV L+A D + +W GTG
Sbjct: 186 IIDRGRNV-LSASLDGTIRLWECGTG 210
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 210 DLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV----GTGEIMIQIECHPDIVYSAS 265
+L H+++V V +P L TA D V IW++ G + + H V +A
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAAC 303
Query: 266 WNWDGSKLLTTCKDKKMRI 284
++ DG++LLTT + ++R+
Sbjct: 304 FSPDGARLLTTDQKSEIRV 322
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
H + + + P + +I+S S+D +K+W + DG RT L+ H+ V +
Sbjct: 137 AHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNPRT-------LIGHRATVTDIA 188
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTG 248
+NV L+A D + +W GTG
Sbjct: 189 IIDRGRNV-LSASLDGTIRLWECGTG 213
>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O17|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform
pdb|3O2M|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
pdb|3O2M|B Chain B, Crystal Structure Of Jnk1-Alpha1 Isoform Complex With A
Biaryl Tetrazol (A-82118)
Length = 370
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + EP V Y++ A V+L G NV
Sbjct: 162 DCTLKIL---DFGLARTAGTSFMMEPEVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVGTGEIMIQIECH----PDIVYSASWNWDGSKLLTTC 277
IW+VG IM ++ CH P Y WN +L T C
Sbjct: 208 IWSVGC--IMGEMVCHKILFPGRDYIDQWNKVIEQLGTPC 245
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 210 DLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNV----GTGEIMIQIECHPDIVYSAS 265
+L H+++V V +P L TA D V IW++ G + + H V +A
Sbjct: 246 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAAC 304
Query: 266 WNWDGSKLLTTCKDKKMRI 284
++ DG++LLTT + ++R+
Sbjct: 305 FSPDGARLLTTDQKSEIRV 323
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 73 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 282 MRI 284
+++
Sbjct: 131 IKV 133
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V + +I SGS D +KVW I + + LL H V V
Sbjct: 105 GHKSDVXSVDIDKKASXII-SGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 216 KDGEIXLWN 224
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 67 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 282 MRI 284
+++
Sbjct: 125 IKV 127
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V+ + ++I SGS D +KVW I + + LL H V V
Sbjct: 99 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 149
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 209
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 210 KDGEIMLWN 218
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 177 DDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
DD+V I S D +VK W + I D + H + + P ++ +AG
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDG-TLIASAG 209
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDI 260
D + +WN+ + M + ++
Sbjct: 210 KDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 73 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 282 MRI 284
+++
Sbjct: 131 IKV 133
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V+ + ++I SGS D +KVW I + + LL H V V
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 216 KDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 177 DDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
DD+V I S D +VK W + I D + H + + P ++ +AG
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDG-TLIASAG 215
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDI 260
D + +WN+ + M + ++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 73 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 282 MRI 284
+++
Sbjct: 131 IKV 133
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V+ + ++I SGS D +KVW I + + LL H V V
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 216 KDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 177 DDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
DD+V I S D +VK W + I D + H + + P ++ +AG
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDG-TLIASAG 215
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDI 260
D + +WN+ + M + ++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 73 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 282 MRI 284
+++
Sbjct: 131 IKV 133
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V+ + ++I SGS D +KVW I + + LL H V V
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 216 KDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 177 DDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
DD+V I S D +VK W + I D + H + + P ++ +AG
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDG-TLIASAG 215
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDI 260
D + +WN+ + M + ++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A S N++ S S D + W++ G + PV H V
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLT--GDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 223 WHPTAQNVL-LTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
TA L+A D + +W+V TGE + H V S + S +++ +DK
Sbjct: 73 --LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 282 MRI 284
+++
Sbjct: 131 IKV 133
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GHK V+ + ++I SGS D +KVW I + + LL H V V
Sbjct: 105 GHKSDVMSVD-IDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155
Query: 223 WHPTAQN-----VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
P + +++AG+D V WN+ +I H + + + + DG+ + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215
Query: 278 KDKKMRIIN 286
KD ++ + N
Sbjct: 216 KDGEIMLWN 224
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 177 DDNV-IASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 235
DD+V I S D +VK W + I D + H + + P ++ +AG
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIE-------ADFIGHNSNINTLTASPDG-TLIASAG 215
Query: 236 SDNNVAIWNVGTGEIMIQIECHPDI 260
D + +WN+ + M + ++
Sbjct: 216 KDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2G01|B Chain B, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors
pdb|2GMX|A Chain A, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2GMX|B Chain B, Selective Aminopyridine-Based C-Jun N-Terminal Kinase
Inhibitors With Cellular Activity
pdb|2H96|A Chain A, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2H96|B Chain B, Discovery Of Potent, Highly Selective, And Orally
Bioavailable Pyridine Carboxamide C-Jun Nh2-Terminal
Kinase Inhibitors
pdb|2NO3|A Chain A, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
pdb|2NO3|B Chain B, Novel 4-Anilinopyrimidines As Potent Jnk1 Inhibitors
Length = 370
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 25/100 (25%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + EP V Y++ A V+L G NV
Sbjct: 162 DCTLKIL---DFGLARTAGTSFMMEPEVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVGTGEIMIQIECH----PDIVYSASWNWDGSKLLTTC 277
+W+VG IM ++ CH P Y WN +L T C
Sbjct: 208 LWSVGC--IMGEMVCHKILFPGRDYIDQWNKVIEQLGTPC 245
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 230 VLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRT 289
V + SD N+A+W++ ++ Q + H D + DG+KL T D +R + R
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 290 GAIEEEAVCHEGSKATRAI-YLKSGLIFTTGFSKMSERQYSLRAPD----HLDEPIVM 342
G ++ H+ + ++ Y +G G + + PD HL E V+
Sbjct: 215 GRQLQQ---HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL 269
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 177 DDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVG-LVLWHPTAQNVLLTAG 235
D V+ SGS D V +W++ + + P L H V L L + +N +
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLAL---SQENCFAISS 94
Query: 236 S-DNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN 286
S D + +W++ TG + H VYS +++ D ++L+ ++++++ N
Sbjct: 95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 18/132 (13%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQI-PDGGISRTLTEPVVDLLYHQRRVGLV 221
GH+ V +A+SP + ++++G+E +K+W I + S E H V V
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAER-EIKLWNILGECKFSSAEKEN------HSDWVSCV 168
Query: 222 LWHPTAQNV---------LLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSK 272
+ P ++ + G D + +WN +I + H V S + +G
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKY 227
Query: 273 LLTTCKDKKMRI 284
+ T KDKK+ I
Sbjct: 228 IATGGKDKKLLI 239
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H GPVLD+ WS D + + + S D K+W + + + + H V + W
Sbjct: 85 HTGPVLDVCWS-DDGSKVFTASCDKTAKMWDLS--------SNQAIQIAQHDAPVKTIHW 135
Query: 224 HPTAQNVLLTAGS-DNNVAIWNVGTGEIMIQIECHPDIVYSA 264
+ GS D + W+ + M+ ++ P+ Y A
Sbjct: 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCA 176
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 159 ALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVV--DLLYHQR 216
A H V + ++ DNV+ASG + + +W + S + P+ +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 217 RVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI 254
V + W+ + +V +AGS N +IW++ + +I +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGS---EDCVVKVWQIPDGGISRTLTEPVVDLLY-HQRRV 218
G K + + W P + +A+ + D + +W + R P+ L HQ+ +
Sbjct: 212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL------RNANTPLQTLNQGHQKGI 265
Query: 219 GLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQI 254
+ W +++LL++G DN V +WN + E + Q
Sbjct: 266 LSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF 301
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 154 INADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLY 213
INA++ G G +D+ W DD + G + + V+QI T P L+
Sbjct: 197 INAENHSGDGSLG--VDVEW-VDDDKFVIPGPKGAIF-VYQI-------TEKTPTGKLIG 245
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKL 273
H + ++ ++ T + +LL+A D + IW+ G G H + SASW D K+
Sbjct: 246 HHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKV 303
Query: 274 LTTCKDKKMRI 284
++ D +R+
Sbjct: 304 ISCSMDGSVRL 314
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 44/240 (18%), Positives = 96/240 (40%), Gaps = 42/240 (17%)
Query: 168 VLDIAWSPHDDNVIASGSEDCVVKVWQI--PDGGISRTLTEPVVDLLYH----------- 214
++ W+P D++++A G ++ V ++ +I D + ++ L H
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107
Query: 215 QRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLL 274
+V + W N ++T + + +WN TG ++ + H + S WN DG+ ++
Sbjct: 108 TNQVTCLAWSHDG-NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHII 165
Query: 275 TTCKDKKMRIINPRTG--------------AIEEEAVCHEGSKATRAIYLK--------- 311
+ + + N +G +I E +GS ++
Sbjct: 166 SMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP 225
Query: 312 SGLIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDS 371
G IF +++E+ + + H PI ++E + +N ++ D T ++ G G+S
Sbjct: 226 KGAIFVY---QITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 183 SGSEDCVVKVWQIPDGGISRTLTEPVVDLLY--HQRRVGLVLWHPTAQNVLLTAGSDNNV 240
SGS+D +KVW L + VV Y H +V V P +V L+ DN +
Sbjct: 144 SGSKDICIKVWD---------LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRI 194
Query: 241 AIWNVGTGEIMIQIEC 256
+W+ + QI C
Sbjct: 195 LLWDTRCPKPASQIGC 210
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 171 IAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNV 230
+AW P V G E+ V + + T V+ H + V +++ P +
Sbjct: 220 LAWHPQQSEVFVFGDENGTVSL-------VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPF 272
Query: 231 LLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTT 276
L + D ++A+ + E + + + H D V A+W+ LLTT
Sbjct: 273 LASLSEDCSLAVLDSSLSE-LFRSQAHRDFVRDATWSPLNHSLLTT 317
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H V + +SPH +AS SEDC + V + +L+E + H+ V W
Sbjct: 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAV-------LDSSLSE-LFRSQAHRDFVRDATW 307
Query: 224 HPTAQNVLLTAGSDNNV 240
P ++L T G D+ V
Sbjct: 308 SPLNHSLLTTVGWDHQV 324
>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine
Inhibitor
Length = 369
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 167 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 212
Query: 242 IWNVGTGEIMIQIECH----PDIVYSASWNWDGSKLLTTC 277
+W+VG IM ++ CH P Y WN +L T C
Sbjct: 213 LWSVGC--IMGEMVCHKILFPGRDYIDQWNKVIEQLGTPC 250
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTE--PVVDLLYHQRRVGLV 221
HK V ++P D ++A+ S D VK+W + R + + + + H++ V
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL------RNIKDKNSYIAEMPHEKPVNAA 255
Query: 222 LWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
++PT LLT N + +++ QI HP
Sbjct: 256 YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 292
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTE--PVVDLLYHQRRVGLV 221
HK V ++P D ++A+ S D VK+W + R + + + + H++ V
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDL------RNIKDKNSYIAEMPHEKPVNAA 256
Query: 222 LWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
++PT LLT N + +++ QI HP
Sbjct: 257 YFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293
>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor
Length = 358
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 25/100 (25%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 156 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 201
Query: 242 IWNVGTGEIMIQIECH----PDIVYSASWNWDGSKLLTTC 277
+W+VG IM ++ CH P Y WN +L T C
Sbjct: 202 LWSVGC--IMGEMVCHKILFPGRDYIDQWNKVIEQLGTPC 239
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+G V +++ D V+ SGS D KVW+ +G + V +L H V
Sbjct: 102 GHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSL-------VYNLQAHNASVWDAK 149
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
++N LTA +D + +W I H D+V + DG ++ D +
Sbjct: 150 VVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLI 207
Query: 283 RIINPRTGAIEEEAVCHE 300
++++ TG + HE
Sbjct: 208 KLVDXHTGDVLRTYEGHE 225
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 178 DNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSD 237
D I + S D +W + G + ++ D+L L L N ++ G D
Sbjct: 166 DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLC------LDLAPSETGNTFVSGGCD 219
Query: 238 NNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTGAIEEEAV 297
+W++ +G+ + E H V S + G + D R+ + R + E
Sbjct: 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA---DREV- 275
Query: 298 CHEGSKATRAIYLKSGLIF 316
AIY K +IF
Sbjct: 276 ---------AIYSKESIIF 285
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 229 NVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPR 288
N ++T+ D A+W++ TG+ H V S S D ++ D ++ + R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 289 TGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAP--------DHLDEPI 340
G + HE S + +G F TG + R + LRA D++ I
Sbjct: 215 EGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 341 VMVELDTSNGVMFPLYD 357
V S ++ YD
Sbjct: 274 TSVSFSKSGRLLLAGYD 290
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 229 NVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPR 288
N ++T+ D A+W++ TG+ H V S S D ++ D ++ + R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 289 TGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAP--------DHLDEPI 340
G + HE S + +G F TG + R + LRA D++ I
Sbjct: 215 EGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 341 VMVELDTSNGVMFPLYD 357
V S ++ YD
Sbjct: 274 TSVSFSKSGRLLLAGYD 290
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 229 NVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPR 288
N ++T+ D A+W++ TG+ H V S S D ++ D ++ + R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 289 TGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAP--------DHLDEPI 340
G + HE S + +G F TG + R + LRA D++ I
Sbjct: 215 EGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273
Query: 341 VMVELDTSNGVMFPLYD 357
V S ++ YD
Sbjct: 274 TSVSFSKSGRLLLAGYD 290
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 229 NVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPR 288
N ++T+ D A+W++ TG+ H V S S D ++ D ++ + R
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 289 TGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAP--------DHLDEPI 340
G + HE S + +G F TG + R + LRA D++ I
Sbjct: 226 EGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 284
Query: 341 VMVELDTSNGVMFPLYD 357
V S ++ YD
Sbjct: 285 TSVSFSKSGRLLLAGYD 301
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 1/108 (0%)
Query: 229 NVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPR 288
N ++T+ D A+W++ TG+ H V S S D ++ D ++ + R
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 289 TGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAPDHL 336
G + HE S + +G F TG + R + LRA L
Sbjct: 215 EGMCRQTFTGHE-SDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 4/154 (2%)
Query: 138 ALSILPPPSTAPNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPD 197
A SI S A G + L G HKG + P + + +GS D +W +
Sbjct: 131 ACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT 189
Query: 198 GGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG-TGEIMIQIEC 256
G H V + + N+ ++ D V +W++ T +
Sbjct: 190 GQRISIFGSEFPS--GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247
Query: 257 HPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTG 290
H + S + DG + T D R+ + RTG
Sbjct: 248 HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG 281
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH VL ++ + + N+ SGS D V++W + R + V H+ + V
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDL------RITSRAVRTYHGHEGDINSVK 256
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPD 259
+ P Q T D ++++ TG + PD
Sbjct: 257 FFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREPD 292
>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3-
Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide
pdb|2P33|A Chain A, Synthesis And Sar Of Aminopyrimidines As Novel C-Jun N-
Terminal Kinase (Jnk) Inhibitors
pdb|3CGF|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3CGO|A Chain A, Irak-4 Inhibitors (Part Ii)- A Structure Based Assessment
Of Imidazo[1,2 A]pyridine Binding
pdb|3G90|X Chain X, Jnk-3 Bound To
(Z)-5-Fluoro-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)
Methyl)-3-(Hydroxyimino)indolin-2-One
pdb|3G9N|A Chain A, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Phenylindolin-2-One
pdb|3G9L|X Chain X, Jnk3 Bound To
(Z)-1-((6-Fluoro-4h-Benzo[d][1,3]dioxin-8-Yl)methyl)-3-
(Hydroxyimino)-4-Styrylindolin-2-One
Length = 365
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 163 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 208
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 209 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 246
>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMQ|A Chain A, The Structure Of Jnk3 In Complex With An Imidazole-
Pyrimidine Inhibitor
pdb|1PMU|A Chain A, The Crystal Structure Of Jnk3 In Complex With A
Phenantroline Inhibitor
pdb|1PMV|A Chain A, The Structure Of Jnk3 In Complex With A
Dihydroanthrapyrazole Inhibitor
Length = 364
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 163 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 208
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 209 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 246
>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious
Tri-Substituted Thiophene Based Jnk Inhibitor
Length = 363
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 162 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 208 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 245
>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-{3-Cyano-6-[3-(1-
Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2,
3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide
pdb|2O2U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Cyano-4,5,6,7-
Tetrahydro-1-Benzothien-2-Yl)-2-Fluorobenzamide
pdb|2ZDT|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|2ZDU|A Chain A, Crystal Structure Of Human Jnk3 Complexed With An
Isoquinolone Inhibitor
pdb|3DA6|A Chain A, Crystal Structure Of Human Jnk3 Complexed With
N-(3-Methyl-
4-(3-(2-(Methylamino)pyrimidin-4-Yl)pyridin-2-Yloxy)
Naphthalen-1-Yl)-1h-Benzo[d]imidazol-2-Amine
pdb|2WAJ|A Chain A, Crystal Structure Of Human Jnk3 Complexed With A
1-Aryl-3,4- Dihydroisoquinoline Inhibitor
pdb|3V6R|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6R|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|A Chain A, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
pdb|3V6S|B Chain B, Discovery Of Potent And Selective Covalent Inhibitors Of
Jnk
Length = 364
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 162 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 208 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 245
>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide
pdb|4H39|A Chain A, Crystal Structure Of Jnk3 In Complex With Jip1 Peptide
pdb|4H3B|A Chain A, Crystal Structure Of Jnk3 In Complex With Sab Peptide
pdb|4H3B|C Chain C, Crystal Structure Of Jnk3 In Complex With Sab Peptide
Length = 356
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 156 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 201
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 202 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 239
>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And
Thiazole Based Inhibitors Of Jnk For The Treatment Of
Neurodegenerative Diseases
pdb|3OY1|A Chain A, Highly Selective C-Jun N-Terminal Kinase (Jnk) 2 And 3
Inhibitors With In Vitro Cns-Like Pharmacokinetic
Properties
Length = 362
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 161 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 206
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 207 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 244
>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3
Length = 356
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 156 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 201
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 202 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 239
>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3
Length = 355
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 155 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 200
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P Y WN +L T C
Sbjct: 201 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 238
>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With
Mgamp-Pnp
Length = 423
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 187 DCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
DC +K+ D G++RT + Y +V + A V+L G NV IW+VG
Sbjct: 200 DCTLKIL---DFGLARTAGTSFMMTPY------VVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 247 --TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
GE++ P Y WN +L T C
Sbjct: 251 CIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 283
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H + +A+S H +AS SEDC V V + +E D L H+ V V W
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAV-------LDADFSEVFRD-LSHRDFVTGVAW 319
Query: 224 HPTAQNVLLTAGSDNNV 240
P + T G D+ V
Sbjct: 320 SPLDHSKFTTVGWDHKV 336
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 177 DDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGS 236
D SG +D VKVW + + ++ H V V P + L+ G
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-------HSSEVNCVAACPGKDTIFLSCGE 202
Query: 237 DNNVAIWNVGTGEIMIQIE-CHPDIV-YSASWN 267
D + +W+ + +I+ C D + S +W+
Sbjct: 203 DGRILLWDTRKPKPATRIDFCASDTIPTSVTWH 235
>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk
Inhibitor For The Prevention Of Ischemia-Reperfusion
Injury
pdb|3TTI|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-930, An Orally
Active Anti-Fibrotic Jnk Inhibitor
Length = 464
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Query: 187 DCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVG 246
DC +K+ D G++RT + Y +V + A V+L G NV IW+VG
Sbjct: 200 DCTLKIL---DFGLARTAGTSFMMTPY------VVTRYYRAPEVILGMGYKENVDIWSVG 250
Query: 247 T--GEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
GE++ P Y WN +L T C
Sbjct: 251 CIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPC 283
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 148 APNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEP 207
A R A H L+ G V+D+ W+P +++A D + V Q+ T T
Sbjct: 132 AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV-------TETVK 184
Query: 208 VVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
V L V V W P + L G N + + T + I C P
Sbjct: 185 VCATLPSTVAVTSVCWSPKGKQ--LAVGKQNGTVVQYLPTLQEKKVIPCPP 233
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 148 APNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEP 207
A R A H L+ G V+D+ W+P +++A D + V Q+ T T
Sbjct: 132 AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV-------TETVK 184
Query: 208 VVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
V L V V W P + L G N + + T + I C P
Sbjct: 185 VCATLPSTVAVTSVCWSPKGKQ--LAVGKQNGTVVQYLPTLQEKKVIPCPP 233
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 148 APNTGRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEP 207
A R A H L+ G V+D+ W+P +++A D + V Q+ T T
Sbjct: 132 AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQV-------TETVK 184
Query: 208 VVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHP 258
V L V V W P + L G N + + T + I C P
Sbjct: 185 VCATLPSTVAVTSVCWSPKGKQ--LAVGKQNGTVVQYLPTLQEKKVIPCPP 233
>pdb|1SDD|B Chain B, Crystal Structure Of Bovine Factor Vai
Length = 647
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 7/101 (6%)
Query: 315 IFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGD-SVI 373
+ TG + Y P + E V LD N +F + N++Y G D S I
Sbjct: 394 VLLTGIQTQGAKHY--LKPYYTTEFCVAYSLDRKNWRIFKG-NSTRNVMYFGGNSDASTI 450
Query: 374 RYFEITAEPPFV-HYINTFQTPDPQRGIGMMPKRGCDVNSC 413
+ +I +PP V YI T + + +GC+VN C
Sbjct: 451 KENQI--DPPVVARYIRISPTGSYNKPALRLELQGCEVNGC 489
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 373 IRYFEITAEPPFVHYINTFQTPDPQRGIGMMPKRGCDVNSCE 414
+R F + +P ++HY + DP +G + RGC V S E
Sbjct: 36 VRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVE 74
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 373 IRYFEITAEPPFVHYINTFQTPDPQRGIGMMPKRGCDVNSCE 414
+R F + +P ++HY + DP +G + RGC V S E
Sbjct: 25 VRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVE 63
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
Q LL NN+ IWN+ TG+++ ++ H D Y AS
Sbjct: 193 QEALLGTTIMNNIVIWNLKTGQLLKKM--HIDDSYQAS 228
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 228 QNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSAS 265
Q LL NN+ IWN+ TG+++ ++ H D Y AS
Sbjct: 193 QEALLGTTIMNNIVIWNLKTGQLLKKM--HIDDSYQAS 228
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 373 IRYFEITAEPPFVHYINTFQTPDPQRGIGMMPKRGCDVNSCE 414
+R F + +P ++HY + DP +G + RGC V S E
Sbjct: 40 VRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVE 78
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 373 IRYFEITAEPPFVHYINTFQTPDPQRGIGMMPKRGCDVNSCE 414
+R F + +P ++HY + DP +G + RGC V S E
Sbjct: 27 VRKFILREDPAYLHYYDPAGAEDP---LGAIHLRGCVVTSVE 65
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 159 ALVGGHKGPVLDIAWSPHDD---NVIASGSEDCVVKVWQIPDGGISRTLTEPVVD--LLY 213
A + GHK + I+W+P +IA+G +D +++++I + E + + +
Sbjct: 206 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD 265
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKL 273
+ V + + N A +N+ + E++ + + H V+S SWN G+ L
Sbjct: 266 NSADVDMDAQGRSDSNTEEKAELQSNLQV------ELLSEHDDHNGEVWSVSWNLTGTIL 319
Query: 274 LTTCKDKKMRI 284
+ D K+R+
Sbjct: 320 SSAGDDGKVRL 330
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 159 ALVGGHKGPVLDIAWSPHDD---NVIASGSEDCVVKVWQIPDGGISRTLTEPVV---DLL 212
A + GHK + I+W+P +IA+G +D +++++I + +S +E + ++
Sbjct: 208 AKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK-LSPLASEESLTNSNMF 266
Query: 213 YHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSK 272
+ V + + N A +N+ + E++ + + H V+S SWN G+
Sbjct: 267 DNSADVDMDAQGRSDSNTEEKAELQSNLQV------ELLSEHDDHNGEVWSVSWNLTGTI 320
Query: 273 LLTTCKDKKMRI 284
L + D K+R+
Sbjct: 321 LSSAGDDGKVRL 332
>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin
Antagonistically Control The Nuclear Shuttling Of Nfat4
Length = 371
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 163 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 208
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P + WN +L T C
Sbjct: 209 IWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPC 246
>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
pdb|1UKI|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By
The Scaffolding Protein Jip1 And Sp600125
Length = 369
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 21/98 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K+ D G++RT + P V Y++ A V+L G NV
Sbjct: 162 DCTLKIL---DFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTC 277
IW+VG GE++ P + WN +L T C
Sbjct: 208 IWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPC 245
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW 223
H G V I W+P + ++ G+ D VW + RT +P + +L R V W
Sbjct: 51 HNGQVTGIDWAPDSNRIVTCGT-DRNAYVWTLK----GRTW-KPTLVILRINRAARCVRW 104
Query: 224 HPTAQNVLLTAGS 236
P + + +GS
Sbjct: 105 APNEKKFAVGSGS 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,863,685
Number of Sequences: 62578
Number of extensions: 689951
Number of successful extensions: 2173
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1596
Number of HSP's gapped (non-prelim): 369
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)