RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17682
(490 letters)
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 249 bits (636), Expect = 6e-77
Identities = 121/316 (38%), Positives = 186/316 (58%), Gaps = 6/316 (1%)
Query: 152 GRINADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDL 211
G++ ++ ++ G +GP++D+A++P D + + SED + W IP+ G+++ +++P+V L
Sbjct: 62 GKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL 121
Query: 212 LYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGS 271
H ++VG+V +HP+A NVL +AG+D V +W+V G+ + I+CH D + S WN DGS
Sbjct: 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181
Query: 272 KLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLK-SGLIFTTGFSKMSERQYSL 330
L TT KDKK+ II+PR G I H +K+ R ++ K LI T G SK +RQ L
Sbjct: 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241
Query: 331 RAPDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAEPPFVHYINT 390
+ P V+LD S+ + P +D DTNL+Y+ KG+ IR FE+ E +
Sbjct: 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS--S 299
Query: 391 FQTPDPQRGIGMMPKRGCDVNSCEIGRFFRLNNSGLCQVVSMTVPRKS--ELFQDDLYPD 448
+ + +P +G+ MMPK D CEI RF+ L L + M +PRK Q D+YP
Sbjct: 300 YSSVEPHKGLCMMPKWSLDTRKCEIARFYALTYHSLYT-IQMLLPRKQADSELQVDVYPP 358
Query: 449 TVGDTAALTADEWFAG 464
T D A+TADE+F+G
Sbjct: 359 TFADHPAITADEYFSG 374
Score = 36.8 bits (85), Expect = 0.024
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 34 TEPVVDLLYHQRRVGLVLWHPTAQNVLLTAG 64
++P+V L H ++VG+V +HP+A NVL +AG
Sbjct: 115 SDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145
Score = 29.1 bits (65), Expect = 6.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 1 DLYPDTVGDTAALTADEWF 19
D+YP T D A+TADE+F
Sbjct: 354 DVYPPTFADHPAITADEYF 372
>gnl|CDD|220080 pfam08954, DUF1900, Domain of unknown function (DUF1900). This
domain is predominantly found in the structural protein
coronin, and is duplicated in some sequences. It has no
known function.
Length = 136
Score = 218 bits (559), Expect = 4e-70
Identities = 68/129 (52%), Positives = 90/129 (69%), Gaps = 2/129 (1%)
Query: 339 PIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAEPPFVHYINTFQTPDPQR 398
P+ ELDTS+GV+ P YD DT L+YL GKGD IRY+E+T E P++HY++ + + +PQ+
Sbjct: 1 PLATEELDTSSGVLIPFYDEDTGLLYLAGKGDGNIRYYEVTDEEPYLHYLSEYTSTEPQK 60
Query: 399 GIGMMPKRGCDVNSCEIGRFFRLNNSGLCQVVSMTVPRK-SELFQDDLYPDTVGDTAALT 457
G +PKR DV CEI RF++L N + +S VPRK SELFQ+DLYPDT G ALT
Sbjct: 61 GFCFLPKRALDVKKCEIARFYKLTNDS-IEPISFIVPRKNSELFQEDLYPDTAGTEPALT 119
Query: 458 ADEWFAGNE 466
A+EW +G
Sbjct: 120 AEEWLSGKN 128
Score = 41.0 bits (97), Expect = 2e-04
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 1 DLYPDTVGDTAALTADEWFA 20
DLYPDT G ALTA+EW +
Sbjct: 106 DLYPDTAGTEPALTAEEWLS 125
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 185 bits (472), Expect = 2e-52
Identities = 105/328 (32%), Positives = 171/328 (52%), Gaps = 22/328 (6%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGIS-RTLTEPVVDLLYHQRRVGLV 221
GH +LD+ ++P ++ASGSED ++VW+IP S + + +P L H++++ ++
Sbjct: 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISII 131
Query: 222 LWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
W+P ++ ++G D+ V IW++ + QI P + S WN G+ L TC K
Sbjct: 132 DWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM-PKKLSSLKWNIKGNLLSGTCVGKH 190
Query: 282 MRIINPRTGAIEEEAVCHEGSKATRAIYLKSGL------IFTTGFSKMSERQYSLRAPDH 335
M II+PR I H+G K T+ I++ GL I +TGFSK + R+ L +
Sbjct: 191 MHIIDPRKQEIASSFHIHDGGKNTKNIWI-DGLGGDDNYILSTGFSKNNMREMKLWDLKN 249
Query: 336 LDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAEPPFVHYINTFQTPD 395
+V + +D ++ + P YD T L+YL GKGD RY++ + + +N +++
Sbjct: 250 TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS--IRKVNEYKSCS 307
Query: 396 PQRGIGMMPKRGCDVNSCEIGRFFRLNNSGLCQVVSMTVPRK-SELFQDDLYPDTVGDTA 454
P R G +PK+ CDV CEIGR ++ N+ + +S VPRK FQ+DLYP +
Sbjct: 308 PFRSFGFLPKQICDVYKCEIGRVYKNENNSSIRPISFYVPRKNPTKFQEDLYPPILMHDP 367
Query: 455 ALTADEWFAG----------NELFQDDL 472
++ W G +L +DDL
Sbjct: 368 ERSSRNWIDGKDNKMKRINIKDLTEDDL 395
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 97.8 bits (244), Expect = 8e-23
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 16/219 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH GPV D+A S D +ASGS D +++W + G RTLT H V V
Sbjct: 49 GHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTG-------HTSYVSSVA 100
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
+ P + +L ++ D + +W+V TG+ + + H D V S +++ DG+ + ++ +D +
Sbjct: 101 FSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
Query: 283 RIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAPDHLDEPIVM 342
++ + RTG H G + G + S + + + L L
Sbjct: 160 KLWDLRTGKCVATLTGHTGE-VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218
Query: 343 VELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEITAE 381
NGV + PD L+ G D IR +++
Sbjct: 219 -----ENGVNSVAFSPDGYLL-ASGSEDGTIRVWDLRTG 251
Score = 86.2 bits (214), Expect = 1e-18
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A+SP D ++A+GS D +KVW + G + RTL H V V
Sbjct: 7 GHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKG-------HTGPVRDVA 58
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKM 282
L + SD + +W++ TGE + + H V S +++ DG L ++ +DK +
Sbjct: 59 ASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 283 RIINPRTGAIEEEAVCHEGS 302
++ + TG H
Sbjct: 118 KVWDVETGKCLTTLRGHTDW 137
Score = 84.3 bits (209), Expect = 4e-18
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH V +A+SP D +AS S+D +K+W + G TLT H V V
Sbjct: 133 GHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTG-------HTGEVNSVA 184
Query: 223 WHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTC-KDKK 281
+ P + LL++ SD + +W++ TG+ + + H + V S +++ DG LL + +D
Sbjct: 185 FSPDGEK-LLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG-YLLASGSEDGT 242
Query: 282 MRIINPRTGAIEEEAVCHEGS 302
+R+ + RTG + H S
Sbjct: 243 IRVWDLRTGECVQTLSGHTNS 263
Score = 80.1 bits (198), Expect = 1e-16
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH G V +A+SP D + S S D +K+W + G TL H+ V V
Sbjct: 175 GHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLR-------GHENGVNSVA 226
Query: 223 WHPTAQNVLLTAGS-DNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKK 281
+ P LL +GS D + +W++ TGE + + H + V S +W+ DG +L + D
Sbjct: 227 FSPD--GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284
Query: 282 MRI 284
+RI
Sbjct: 285 IRI 287
Score = 63.5 bits (155), Expect = 4e-11
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVL 222
GH+ V +A+SP D ++ASGSED ++VW + G +TL+ H V +
Sbjct: 217 GHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSG-------HTNSVTSLA 268
Query: 223 WHPTAQNVLLTAGSDNNVAIWN 244
W P + L + +D + IW+
Sbjct: 269 WSPDGK-RLASGSADGTIRIWD 289
Score = 52.0 bits (125), Expect = 2e-07
Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKL 273
H V V + P +L T D + +W++ TGE++ ++ H V + + DG+ L
Sbjct: 8 HTGGVTCVAFSPD-GKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66
Query: 274 LTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAI-YLKSGLIFTTGFSKMSERQYSLRA 332
+ DK +R+ + TG H ++ + G I ++ + + + +
Sbjct: 67 ASGSSDKTIRLWDLETGECVRTLTGHT--SYVSSVAFSPDGRILSSSSRDKTIKVWDVE- 123
Query: 333 PDHLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIR 374
+ ++ V + PD V D I+
Sbjct: 124 ----TGKCLTTLRGHTDWVNSVAFSPDGTFVA-SSSQDGTIK 160
Score = 36.2 bits (84), Expect = 0.030
Identities = 13/70 (18%), Positives = 25/70 (35%)
Query: 253 QIECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKS 312
++ H V +++ DG L T D +++ + TG + H G A
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63
Query: 313 GLIFTTGFSK 322
+ + K
Sbjct: 64 TYLASGSSDK 73
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 74.4 bits (181), Expect = 3e-14
Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 27/344 (7%)
Query: 25 LTYFSPRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGKEAEPILISLKDG----YIP 80
+ + T + + L H V + + P + + + + L L+ G +
Sbjct: 136 VKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA 195
Query: 81 PSEKSKSALKVTKRSNVLDKVGGKGGANRN-STANEITISEDYVKEFKEEIRKLKSQQAL 139
S+L + +L G G R + + + +L
Sbjct: 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255
Query: 140 SILPPPSTAPNTGRI------NADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVW 193
++ T R+ ++ + GH VL +A+SP D ++ASGS D V++W
Sbjct: 256 LAS---GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLW 311
Query: 194 QIPDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQ 253
+ G + +LT L H+ V + + P ++ D + +W++ TG+ +
Sbjct: 312 DLETGKLLSSLT-----LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 254 IECHPDIVYSASWNWDGSKLLTTCKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSG 313
+E H + V S S++ DG + + D +R+ + TG++ H +
Sbjct: 367 LEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425
Query: 314 LIFTTGFSKMSERQYSLRAPDHLDEPIVMVELDTSNGVMFPLYD 357
+ + ++R D + + D
Sbjct: 426 SLASGSSDN------TIRLWDLKTSLKSVSFSPDGKVLASKSSD 463
Score = 69.0 bits (167), Expect = 2e-12
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 18/224 (8%)
Query: 160 LVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG-GISRTLTEPVVDLLYHQRRV 218
L+ GH+ + IA+SP + + SGS D +K+W + +G + ++L H V
Sbjct: 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEG------LHDSSV 112
Query: 219 GLVLWHPTAQNVLLTAGS--DNNVAIWNVGT-GEIMIQIECHPDIVYSASWNWDGSKLLT 275
+ N +L A S D V +W++ T G+++ +E H + V S +++ DG L +
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLAS 172
Query: 276 T-CKDKKMRIINPRTGAIEEEAVCHEGSKATRAIYLKSGLIFTTGFSKMSERQYSLRAPD 334
D +++ + RTG H ++ A GL+ +G S + R + L
Sbjct: 173 GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS--- 229
Query: 335 HLDEPIVMVELDTSNGVMFPLYDPDTNLVYLCGKGDSVIRYFEI 378
++ L + + + PD +L+ D IR +++
Sbjct: 230 --TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSS-DGTIRLWDL 270
Score = 67.8 bits (164), Expect = 4e-12
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 158 HALVGGHKGPVLDIAWSPHDDNVIAS--GSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQ 215
+L G H V +A S D N I S D VK+W + T + + L H
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDL------STPGKLIRTLEGHS 155
Query: 216 RRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLT 275
V + + P + + + D + +W++ TG+ + + H D V S +++ DG L+
Sbjct: 156 ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215
Query: 276 TC-KDKKMRIINPRTGAI 292
+ D +R+ + TG +
Sbjct: 216 SGSSDGTIRLWDLSTGKL 233
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 47.3 bits (113), Expect = 2e-07
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVW 193
GH GPV +A+SP D N++ASGS+D V+VW
Sbjct: 9 GHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
Score = 33.5 bits (77), Expect = 0.011
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 248 GEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN 286
G+++ ++ H V S +++ DG+ L + D +R+ +
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 30.4 bits (69), Expect = 0.13
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 214 HQRRVGLVLWHPTAQNVLLTAGSDNNVAIWN 244
H V V + P N+L + D V +W+
Sbjct: 10 HTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 46.5 bits (111), Expect = 3e-07
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 163 GHKGPVLDIAWSPHDDNVIASGSEDCVVKVW 193
GH GPV +A+SP D +ASGS+D +K+W
Sbjct: 10 GHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
Score = 35.0 bits (81), Expect = 0.003
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 247 TGEIMIQIECHPDIVYSASWNWDGSKLLTTCKDKKMRIIN 286
+GE++ ++ H V S +++ DG L + D +++ +
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
Score = 30.0 bits (68), Expect = 0.23
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 206 EPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWN 244
E + L H V V + P L + D + +W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40
>gnl|CDD|149648 pfam08662, eIF2A, Eukaryotic translation initiation factor eIF2A.
This is a family of eukaryotic translation initiation
factors.
Length = 194
Score = 39.9 bits (94), Expect = 0.001
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 27/131 (20%)
Query: 165 KGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLT------EPVVDLLYHQRRV 218
+GP+ D AWSP +G E V+ G + +T + L R
Sbjct: 59 EGPIHDFAWSP-------NGKEFAVIY------GYMPAKITFFDLKGNVIHSLGEQPRNT 105
Query: 219 GLVLWHPTAQNVLLTAGSDN---NVAIWNVGTGEIMIQIECHPDIVYSASWNWDGSKLLT 275
+ W P ++L AG N + W+V + + E + W+ DG LT
Sbjct: 106 --IFWSPFG-RLVLLAGFGNLAGQIEFWDVKNKKKIATAE-ASNATDCE-WSPDGRYFLT 160
Query: 276 TCKDKKMRIIN 286
++R+ N
Sbjct: 161 ATTSPRLRVDN 171
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 32.3 bits (73), Expect = 0.59
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 27/108 (25%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K I D G++RT + P V Y++ A V+L G NV
Sbjct: 162 DCTLK---ILDFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 207
Query: 242 IWNVGTGEIMIQIECH----PDIVYSASWNWDGSKLLTTCKD--KKMR 283
IW+VG IM ++ P + WN +L T C + KK++
Sbjct: 208 IWSVGC--IMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQ 253
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 32.4 bits (73), Expect = 0.63
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 171 IAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEPVVDLLYHQRRVGLVLW---HPTA 227
I W+ + + +AS + + VV+VW + ++ V ++ H++RV W + +A
Sbjct: 538 ICWNSYIKSQVASSNFEGVVQVWDV-------ARSQLVTEMKEHEKRV----WSIDYSSA 586
Query: 228 QNVLLTAGSDN-NVAIWNVGTG 248
LL +GSD+ +V +W++ G
Sbjct: 587 DPTLLASGSDDGSVKLWSINQG 608
Score = 31.2 bits (70), Expect = 1.3
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 164 HKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDG 198
H+ V I +S D ++ASGS+D VK+W I G
Sbjct: 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608
>gnl|CDD|241456 cd13302, PH2_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH)
domain, repeat 2. Pleckstrin is a protein found in
platelets. This name is derived from platelet and
leukocyte C kinase substrate and the KSTR string of
amino acids. Pleckstrin 2 contains two PH domains and a
DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike
pleckstrin 1, pleckstrin 2 does not contain obvious
sites of PKC phosphorylation. Pleckstrin 2 plays a role
in actin rearrangement, large lamellipodia and
peripheral ruffle formation, and may help orchestrate
cytoskeletal arrangement. The PH domains of pleckstrin 2
are thought to contribute to lamellipodia formation.
This cd contains the second PH domain repeat. PH domains
have diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 109
Score = 29.8 bits (67), Expect = 1.0
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 372 VIRYFEITAEPPFVHYINTFQTPDPQRGIGMMPKRGCDVNSCE 414
+R F + +P ++HY + + DP I + RGC V + E
Sbjct: 24 KVRKFVLRDDPAYLHYYDPAKGEDPLGAIHL---RGCVVTAVE 63
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 31.4 bits (71), Expect = 1.4
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 155 NADHALVGGHKGPVLDIAWSPHDDNVIASGSEDCVVKVWQIPDGGISRTLTEP-VVDLLY 213
H PV ++ SP + + + V+ W P P V L +
Sbjct: 22 EVIHTRFESENWPVAYVSESPLGTYLFSEHAAG--VECWGGPSKAKLVRFRHPDVKYLDF 79
Query: 214 HQRRVGLVLW------HPTAQNVLLTAGSDNNVAIWNVGTGEIM 251
LV W P + T S NNV +W++ +G I+
Sbjct: 80 SPNEKYLVTWSREPIIEPEIEISPFT--SKNNVFVWDIASGMIV 121
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 30.1 bits (67), Expect = 2.8
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 187 DCVVKVWQIPDGGISRT-----LTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVA 241
DC +K I D G++RT + P V Y++ A V+L G NV
Sbjct: 155 DCTLK---ILDFGLARTAGTSFMMTPYVVTRYYR-----------APEVILGMGYKENVD 200
Query: 242 IWNVG--TGEIMIQIECHPDIVYSASWNWDGSKLLTTCKD 279
IW+VG GE++ P Y WN +L T C +
Sbjct: 201 IWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPE 240
>gnl|CDD|181784 PRK09334, PRK09334, 30S ribosomal protein S25e; Provisional.
Length = 86
Score = 28.1 bits (63), Expect = 3.0
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 100 KVGGKGGANRNSTANEITISEDYVKEFKEEIRKLK 134
K + + IT+ E+ +K +E++K K
Sbjct: 6 KKKEGSKTEKEIKSTIITLDEELLKRVAKEVKKEK 40
>gnl|CDD|225928 COG3393, COG3393, Predicted acetyltransferase [General function
prediction only].
Length = 268
Score = 29.3 bits (66), Expect = 3.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 359 DTNLVYLCGKGDSVIRYFEITAEPPFVHYINTFQTPDPQRGIG 401
+ +L G G ++ E AE P IN T RG G
Sbjct: 176 RSRTYFLEGDGK-IVAKAETAAENPAYAQINGVYTHPEYRGKG 217
>gnl|CDD|213558 TIGR00762, DegV, EDD domain protein, DegV family. This family of
proteins is related to DegV of Bacillus subtilis and
includes paralogous sets in several species (B.
subtilis, Deinococcus radiodurans, Mycoplasma
pneumoniae) that are closer in percent identity to each
than to most homologs from other species. This suggests
both recent paralogy and diversity of function. DegV
itself is encoded immediately downstream of DegU, a
transcriptional regulator of degradation, but is itself
uncharacterized. Crystallography suggested a
lipid-binding site, while comparison of the crystal
structure to dihydroxyacetone kinase and to a mannose
transporter EIIA domain suggests a conserved domain,
EDD, with phosphotransferase activity [Unknown function,
General].
Length = 275
Score = 29.4 bits (67), Expect = 4.0
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 69 PILISLKDGYIPPSEKSKSALKVTKR--SNVLDKVGGKGGANRNSTANEITIS----EDY 122
PIL ++ DG + P EK + K K+ V + + + I E+
Sbjct: 185 PIL-TVDDGKLVPIEKVRGRKKAIKKLVELVKEDIKDGKPK-------RVAIIHADAEEE 236
Query: 123 VKEFKEEIRKLKSQQALSILP 143
+E KE++++ + + I
Sbjct: 237 AEELKEKLKEKFPVKEILISE 257
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein.
This family represents a retinal pigment epithelial
membrane receptor which is abundantly expressed in
retinal pigment epithelium, and binds plasma retinal
binding protein. The family also includes the sequence
related neoxanthin cleavage enzyme in plants and
lignostilbene-alpha,beta-dioxygenase in bacteria.
Length = 469
Score = 29.1 bits (66), Expect = 6.5
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 354 PLYDPDT----NLVYLCGKGDSVIRYFEITAEPPFVHYINTFQTPDPQRGIGMM 403
P DP T N G + Y+E+ A+ V + F P P M+
Sbjct: 164 PKVDPVTGELVNFGLSLGPKPPYLTYYEVDADGKLVREVPIFSLPGP----SMI 213
>gnl|CDD|227691 COG5404, SulA, SOS-response cell division inhibitor, blocks FtsZ
ring formation [Cell division and chromosome
partitioning].
Length = 169
Score = 28.4 bits (63), Expect = 6.6
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 262 YSASWNWDGSKLLTTCKDKKMRIINPRTGAIEEEAVCHEG 301
SAS++ S + T NP T + E V E
Sbjct: 9 RSASFSSATSNIART------STDNPTTAGLISEVVYSED 42
>gnl|CDD|185735 cd08994, GH43_like_2, Glycosyl hydrolase 43-like family consists of
hypothetical proteins. This subfamily mostly contains
uncharacterized proteins similar to glycosyl hydrolase
family 43 (GH43) which includes enzymes with
beta-xylosidase (EC 3.2.1.37) and
alpha-L-arabinofuranosidase (EC 3.2.1.55) and possibly
bifunctional xylosidase/arabinofuranosidase activities.
GH43 are inverting enzymes (i.e. they invert the
stereochemistry of the anomeric carbon atom of the
substrate) that have an aspartate as the catalytic
general base, a glutamate as the catalytic general acid
and another aspartate that is responsible for pKa
modulation and orienting the catalytic acid. Many of the
enzymes in this family display both
alpha-L-arabinofuranosidase and beta-D-xylosidase
activity using aryl-glycosides as substrates. A common
structural feature of GH43 enzymes is a 5-bladed
beta-propeller domain that contains the catalytic acid
and catalytic base. A long V-shaped groove, partially
enclosed at one end, forms a single extended
substrate-binding surface across the face of the
propeller.
Length = 291
Score = 28.9 bits (65), Expect = 6.8
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 357 DPDTNLVYLCGKGDSVIRYFEITAEPPFVHYINTFQTPDP 396
N Y DS + + PPF+ + T DP
Sbjct: 170 PTKGNRKYGVAIADSPTGPYTKVSGPPFIEPGDNGNTEDP 209
>gnl|CDD|219928 pfam08602, Mgr1, Mgr1-like, i-AAA protease complex subunit. The S.
cerevisiae Mgr1 protein has been shown to be required
for mitochondrial viability in yeast lacking
mitochondrial DNA. It is a mitochondrial inner membrane
protein, which interacts with Yme1 and is a new subunit
of the i-AAA protease complex.
Length = 362
Score = 28.7 bits (64), Expect = 7.2
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 196 PDGGISRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLTAGSDNNVAIWNVGTGEIMI 252
G + P + +GL LW P L SDN ++ + + I
Sbjct: 17 SGGSGDNSKDIPNPAKFIPRPSLGLKLWGP------LVPASDNLPGLYTLVGLQTGI 67
>gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase
domains [DNA replication, recombination, and repair].
Length = 593
Score = 28.8 bits (65), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 271 SKLLTTCKDKKMRIINPRTGAI 292
+KL +T D ++INP TG I
Sbjct: 299 AKLKSTYTDGLPKLINPDTGRI 320
>gnl|CDD|188483 TIGR03968, mycofact_TetR, mycofactocin system transcriptional
regulator. Members of this family are TetR family
putative transcriptional regulators that occur in genome
contexts near proteins of the mycofactocin system. These
include the precursor peptide (TIGR03969), a radical SAM
peptide maturase (TIGR03962), and a putative carrier
protein (TIGR03967).
Length = 190
Score = 28.0 bits (63), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 428 QVVSMTVPRKSELFQDDLYPDTVGDT---AALTA-DEWFA 463
+V++ V R+ L DDL P TVG AL+A ++W A
Sbjct: 129 RVIAEFVARRLGLPPDDLLPRTVGWLTLGVALSAYEQWLA 168
>gnl|CDD|238746 cd01469, vWA_integrins_alpha_subunit, Integrins are a class of
adhesion receptors that link the extracellular matrix to
the cytoskeleton and cooperate with growth factor
receptors to promote celll survival, cell cycle
progression and cell migration. Integrins consist of an
alpha and a beta sub-unit. Each sub-unit has a large
extracellular portion, a single transmembrane segment
and a short cytoplasmic domain. The N-terminal domains
of the alpha and beta subunits associate to form the
integrin headpiece, which contains the ligand binding
site, whereas the C-terminal segments traverse the
plasma membrane and mediate interaction with the
cytoskeleton and with signalling proteins.The VWA
domains present in the alpha subunits of integrins seem
to be a chordate specific radiation of the gene family
being found only in vertebrates. They mediate
protein-protein interactions.
Length = 177
Score = 27.7 bits (62), Expect = 9.2
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 23 FRLTYFSPRTLTEPVVDLLYHQRRVGLVLWHPTAQNVLLT--------AGKEAEPILISL 74
F L + RT EP+ L+ H ++ + TA ++T A K+A +L+ +
Sbjct: 54 FTLNEY--RTKEEPLS-LVKHISQLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVI 110
Query: 75 KDGYIPPSEKSKSALKVTKRSNVLDKVGGKGGA-NRNSTANEI-TISED 121
DG K + +R ++ G GG R ++ E+ TI+
Sbjct: 111 TDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHFQRENSREELKTIASK 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.416
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,244,582
Number of extensions: 2453411
Number of successful extensions: 2282
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2236
Number of HSP's successfully gapped: 48
Length of query: 490
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 389
Effective length of database: 6,457,848
Effective search space: 2512102872
Effective search space used: 2512102872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)