Query psy17685
Match_columns 286
No_of_seqs 170 out of 257
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 20:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04636 PA26: PA26 p53-induce 100.0 2.3E-55 4.9E-60 431.5 17.0 177 93-269 12-193 (450)
2 KOG3746|consensus 100.0 1.1E-52 2.3E-57 405.1 11.1 178 92-269 115-297 (553)
3 TIGR01926 peroxid_rel uncharac 99.9 8.4E-27 1.8E-31 200.1 16.5 158 99-256 11-176 (177)
4 PF04636 PA26: PA26 p53-induce 99.9 1.1E-24 2.5E-29 214.8 2.0 76 32-107 351-427 (450)
5 KOG3746|consensus 99.9 8.7E-25 1.9E-29 212.1 -2.3 77 30-106 452-529 (553)
6 COG2128 Uncharacterized conser 99.6 1.6E-14 3.5E-19 125.0 15.5 142 113-255 25-176 (177)
7 PF02627 CMD: Carboxymuconolac 98.8 1E-08 2.2E-13 76.9 4.8 77 126-202 1-83 (85)
8 TIGR00778 ahpD_dom alkylhydrop 98.5 2E-07 4.4E-12 65.0 4.4 42 144-185 1-42 (50)
9 COG4950 Uncharacterized protei 98.3 7.6E-06 1.7E-10 73.1 10.5 115 143-257 61-180 (193)
10 TIGR00777 ahpD alkylhydroperox 97.7 0.00011 2.4E-09 65.5 6.4 41 142-182 108-148 (177)
11 COG0599 Uncharacterized homolo 97.2 0.00097 2.1E-08 55.2 6.2 61 121-182 27-87 (124)
12 TIGR02425 decarb_PcaC 4-carbox 94.7 0.17 3.7E-06 42.4 7.8 87 121-208 28-122 (123)
13 TIGR02425 decarb_PcaC 4-carbox 92.4 0.2 4.4E-06 42.0 4.3 65 189-253 51-115 (123)
14 COG0599 Uncharacterized homolo 90.8 0.66 1.4E-05 38.3 5.8 62 190-251 50-111 (124)
15 PF02627 CMD: Carboxymuconolac 89.7 0.83 1.8E-05 33.7 5.0 62 189-250 19-80 (85)
16 TIGR00778 ahpD_dom alkylhydrop 75.9 6.5 0.00014 26.8 4.5 47 190-236 2-48 (50)
17 PF10778 DehI: Halocarboxylic 73.6 17 0.00038 31.9 7.5 28 218-245 58-85 (159)
18 TIGR00777 ahpD alkylhydroperox 72.2 75 0.0016 28.6 13.7 126 122-250 6-171 (177)
19 PF04180 LTV: Low temperature 69.0 2.1 4.5E-05 42.9 0.9 16 47-62 62-79 (421)
20 PRK13291 metal-dependent hydro 47.7 52 0.0011 28.7 5.8 29 223-252 55-83 (173)
21 PF08108 Antimicrobial13: Halo 47.5 3.3 7.2E-05 22.8 -1.1 9 9-17 1-9 (15)
22 PF10136 SpecificRecomb: Site- 42.3 1.7E+02 0.0037 31.3 9.6 127 113-259 33-175 (643)
23 smart00027 EH Eps15 homology d 41.6 1E+02 0.0022 23.7 6.1 53 207-259 22-89 (96)
24 TIGR00538 hemN oxygen-independ 38.9 65 0.0014 32.2 5.7 31 192-222 118-159 (455)
25 PF00627 UBA: UBA/TS-N domain; 34.0 33 0.00073 22.3 1.9 24 212-235 1-24 (37)
26 PF02796 HTH_7: Helix-turn-hel 33.8 55 0.0012 22.2 3.1 27 208-234 2-31 (45)
27 PF05099 TerB: Tellurite resis 33.6 1.3E+02 0.0028 24.3 5.8 102 129-230 23-135 (140)
28 PF02787 CPSase_L_D3: Carbamoy 32.2 62 0.0013 27.1 3.7 56 179-234 23-82 (123)
29 PF10911 DUF2717: Protein of u 28.6 56 0.0012 25.8 2.6 47 188-234 12-58 (77)
30 PHA00438 hypothetical protein 28.6 29 0.00064 27.5 1.1 44 188-231 12-55 (81)
31 PF06783 UPF0239: Uncharacteri 28.4 33 0.00071 27.6 1.3 37 204-240 4-41 (85)
32 COG3415 Transposase and inacti 27.8 83 0.0018 27.2 3.8 50 206-255 58-115 (138)
33 COG4154 FucU Fucose dissimilat 23.4 93 0.002 27.2 3.2 45 135-179 72-116 (144)
34 PF06239 ECSIT: Evolutionarily 21.6 67 0.0014 30.1 2.2 78 57-137 69-163 (228)
No 1
>PF04636 PA26: PA26 p53-induced protein (sestrin); InterPro: IPR006730 Exposure of mammalian cells to hypoxia, radiation and certain chemotherapeutic agents promotes cell cycle arrest and/or apoptosis. Activation of p53 responsive genes is believed to play an important role in mediating such responses. PA26 is differentially induced by genotoxic stress (UV, gamma-irradiation and cytotoxic drugs) in a p53-dependent manner. PA26 gene is a novel p53 target gene with properties common to the GADD family of growth arrest and DNA damage-inducible stress-response genes, and, thus, a potential novel regulator of cellular growth []. A homolgue found in Xenopus, XPA26, was initially detected in the anterior portion of developing notochord at neurula stages, and later in the entire notochord except its posterior region at tailbud stages []. ; GO: 0007050 cell cycle arrest, 0005634 nucleus
Probab=100.00 E-value=2.3e-55 Score=431.54 Aligned_cols=177 Identities=53% Similarity=0.997 Sum_probs=169.6
Q ss_pred hhhccCCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHH
Q psy17685 93 VLKEFHHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINL 170 (286)
Q Consensus 93 ~L~~~~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~ 170 (286)
+++....+|..+.++.++|. |||||++++|++||+||++|++++++||+++||||.+|||||||||||||+|+|+|.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~f~~~gri~~~~~v~~~hP~yl~~f~~t~~~l~~~~gpLp~~~R~yIaimaAarh~C~YLv~~ 91 (450)
T PF04636_consen 12 ILQVNSEDEETHTLLYDAFLFNGRIDNITRVMSFHPQYLESFLRTQDYLLRGDGPLPYHWRHYIAIMAAARHQCSYLVNL 91 (450)
T ss_pred ccccCchhHHHHHHHHHHhhhcCCccHHHHHHHhCHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHhCChHHHHH
Confidence 44455667788889999988 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHH---CCCChHHHHHHHHHHHHHHHHHHHH
Q psy17685 171 QKEEFLSQGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTK---NGWSLGELCHALVLLVNFHSLASFV 247 (286)
Q Consensus 171 H~a~f~~~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~---~gWS~~ELv~Av~Ila~fhsl~~fv 247 (286)
|+++|+.+||||+||+|++.+|+|+|+|.+||++||||||+|+++||+.|++ ++||++|||||++|+||||+||+||
T Consensus 92 ~~~~Fl~~gG~~~WL~Gl~~~p~Kl~~L~~ln~~Lah~PW~i~~~~i~~L~~~g~~~Wsl~ELv~A~~il~~~HsL~sFv 171 (450)
T PF04636_consen 92 HSQEFLRNGGDPEWLQGLEYIPPKLRNLDELNKLLAHRPWLITKEHIENLLKSGEDSWSLAELVQAVVILAHFHSLSSFV 171 (450)
T ss_pred HHHHHHHhCCChHHhcCCccCCHHHHHHHHHHHHHhCCcccccHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HhcCCCCCcCCCCCCCcCCCCc
Q psy17685 248 FACGVNEELDSLTDSKNKLSDK 269 (286)
Q Consensus 248 ~G~Gi~pe~D~~~g~~~~p~d~ 269 (286)
+||||+||.|..+|++++|+..
T Consensus 172 ~GcGI~pE~D~~~~~~~~~~s~ 193 (450)
T PF04636_consen 172 FGCGINPEIDLEGGHTFRPPSP 193 (450)
T ss_pred hhcCCCCCcCcccCCCCCCCCC
Confidence 9999999999999999988543
No 2
>KOG3746|consensus
Probab=100.00 E-value=1.1e-52 Score=405.13 Aligned_cols=178 Identities=49% Similarity=0.873 Sum_probs=169.4
Q ss_pred hhhhccCCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHH
Q psy17685 92 NVLKEFHHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLIN 169 (286)
Q Consensus 92 s~L~~~~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~ 169 (286)
++++....++..+.++.+.|. |||||++++|++||+|+++|+++|.+++.++||||..+||||||||||||||+|+|+
T Consensus 115 eIlq~~te~~r~~al~~~~f~~~grvDnlt~vm~~Hpqy~~sf~rs~~~ml~~dgpLp~s~RHYiaiMAAaRHqCsyLvn 194 (553)
T KOG3746|consen 115 EILQMGTEDKRRHALDELNFDPSGRVDNLTRVMCLHPQYLESFLRSQGYMLVMDGPLPLSYRHYIAIMAAARHQCSYLVN 194 (553)
T ss_pred HHHhccchHHHHHhhHHhhcCcccccccceeehccCcHHHHHHHhhcceEEEECCCCCchHHHHHHHHHHHHHHhHHHHH
Confidence 577777777777767766677 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHH---CCCChHHHHHHHHHHHHHHHHHHH
Q psy17685 170 LQKEEFLSQGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTK---NGWSLGELCHALVLLVNFHSLASF 246 (286)
Q Consensus 170 ~H~a~f~~~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~---~gWS~~ELv~Av~Ila~fhsl~~f 246 (286)
+|.++|++.||||+||.|++..|+|+|+|.++||+||||||.|+++|||.|.+ +.||++||+||++|++|+|++|+|
T Consensus 195 ~H~~eFL~tGGd~~WLlGle~apqKlrkL~elNklLaHRPWlItkehiq~Llktge~~wSl~eLvhAVvllth~HalaSf 274 (553)
T KOG3746|consen 195 HHVREFLETGGDPEWLLGLEWAPQKLRKLDELNKLLAHRPWLITKEHIQVLLKTGEHFWSLAELVHAVVLLTHYHALASF 274 (553)
T ss_pred HHHHHHHHhCCCHHHHhhhhhhHHHHhhHHHHHHHHhcCcceeeHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred HHhcCCCCCcCCCCCCCcCCCCc
Q psy17685 247 VFACGVNEELDSLTDSKNKLSDK 269 (286)
Q Consensus 247 v~G~Gi~pe~D~~~g~~~~p~d~ 269 (286)
++||||+||.|.+++..++++|-
T Consensus 275 vfg~Gi~pe~d~d~~~~~~~~sv 297 (553)
T KOG3746|consen 275 VFGCGIEPEVDLDGSEIFRIPSV 297 (553)
T ss_pred eeccccCCCcCCCcCccCCCCCC
Confidence 99999999999999999987543
No 3
>TIGR01926 peroxid_rel uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.
Probab=99.95 E-value=8.4e-27 Score=200.08 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=144.5
Q ss_pred CChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHH
Q psy17685 99 HSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFL 176 (286)
Q Consensus 99 ~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~ 176 (286)
.+++++.++.+... |++||++++|+++|+.+++|...++.++.++|.||..+||+|++++|..|+|.||+.+|....+
T Consensus 11 a~~~~~~~~~~~~~~~G~v~n~~~~l~~~P~~l~~~~~l~~~~~~~~~~L~~~~relv~l~vs~~ngc~yc~~~H~~~~~ 90 (177)
T TIGR01926 11 LTEEQKAYLAKIEEKTGFVPNVFRALAHDPEALRARTAYFNDLMLGEGGLSRAERELIAVVVSRANGCVYCAAVHGAALR 90 (177)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35566777777654 9999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hccCChhhhc----cc--CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q psy17685 177 SQGGDQDWLK----GL--SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFAC 250 (286)
Q Consensus 177 ~~gGDp~wl~----gl--~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~ 250 (286)
..|++++-+. +. ...++|+|++++|+..++..|..+++++++.|++.|||++||++++.++++|+++|++..++
T Consensus 91 ~~g~~~~~~~ai~~~~~~~~~~~~e~a~l~~a~~~~~~~~~v~~~~~~~l~~~g~s~~eivel~~~i~~~~~~nr~~~~l 170 (177)
T TIGR01926 91 QLSGDPDLADAVAVNFRDADLSPRERAMLDFAVKLTATPAKVNEADFAALRAAGFSDLDILDLIHSVAFFNWANRLMLAL 170 (177)
T ss_pred HhcCCHHHHHHHHhCcccCCCCHHHHHHHHHHHHHhhCcccCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999886543 21 34799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCc
Q psy17685 251 GVNEEL 256 (286)
Q Consensus 251 Gi~pe~ 256 (286)
|+.+|.
T Consensus 171 ~~~~d~ 176 (177)
T TIGR01926 171 GEPPNP 176 (177)
T ss_pred CCCCCC
Confidence 999875
No 4
>PF04636 PA26: PA26 p53-induced protein (sestrin); InterPro: IPR006730 Exposure of mammalian cells to hypoxia, radiation and certain chemotherapeutic agents promotes cell cycle arrest and/or apoptosis. Activation of p53 responsive genes is believed to play an important role in mediating such responses. PA26 is differentially induced by genotoxic stress (UV, gamma-irradiation and cytotoxic drugs) in a p53-dependent manner. PA26 gene is a novel p53 target gene with properties common to the GADD family of growth arrest and DNA damage-inducible stress-response genes, and, thus, a potential novel regulator of cellular growth []. A homolgue found in Xenopus, XPA26, was initially detected in the anterior portion of developing notochord at neurula stages, and later in the entire notochord except its posterior region at tailbud stages []. ; GO: 0007050 cell cycle arrest, 0005634 nucleus
Probab=99.89 E-value=1.1e-24 Score=214.76 Aligned_cols=76 Identities=49% Similarity=0.830 Sum_probs=73.0
Q ss_pred ccCCCCCCCCcchh-hHHhhhhccccCCCchhhhHHHhHhHHhHhhcccCCccccCchhhhhhhhccCCChhhhhcc
Q psy17685 32 RGSIFFEPFRPNLN-RDLLFAGIRHDDYDYGEVNQLLERSLKSFIKTTACYPERMTSEEYNNVLKEFHHSEKSQLYS 107 (286)
Q Consensus 32 ~~~~~~~p~~~~~~-~~~~~~gir~ddy~y~~vn~ll~~~~k~~iK~vaC~PermTk~~~~s~L~~~~~~Ek~q~Lf 107 (286)
+..|+|+|||.||| |+|||||||||||||+|||+||+|++|+|||+|+|+||++|+++|.++|+.+++|||+|+.+
T Consensus 351 ~~~VdTs~~R~Aiw~Yiq~i~Gi~~DDydY~evN~lL~r~~K~~iK~~~c~Pe~~t~~~~~~~~~~~~~SEKvHVnL 427 (450)
T PF04636_consen 351 HEDVDTSPFRRAIWNYIQCIFGIRHDDYDYGEVNKLLERSLKVYIKTVACFPEKITKRDYESFWRQFKHSEKVHVNL 427 (450)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcccccCCCHHHHHHHhhhHHHHHhHhhcccHHHhhHHHhhhcccCCCchHHHHHHH
Confidence 56799999999999 79999999999999999999999999999999999999999999999999999999999733
No 5
>KOG3746|consensus
Probab=99.88 E-value=8.7e-25 Score=212.07 Aligned_cols=77 Identities=43% Similarity=0.665 Sum_probs=73.6
Q ss_pred hhccCCCCCCCCcchh-hHHhhhhccccCCCchhhhHHHhHhHHhHhhcccCCccccCchhhhhhhhccCCChhhhhc
Q psy17685 30 YFRGSIFFEPFRPNLN-RDLLFAGIRHDDYDYGEVNQLLERSLKSFIKTTACYPERMTSEEYNNVLKEFHHSEKSQLY 106 (286)
Q Consensus 30 ~~~~~~~~~p~~~~~~-~~~~~~gir~ddy~y~~vn~ll~~~~k~~iK~vaC~PermTk~~~~s~L~~~~~~Ek~q~L 106 (286)
....-|+|.-+|.||| |.||+|||||||||||||||+|||++|+|||||+|||||.|+++|+.+|+.+.+|||+|+.
T Consensus 452 amh~~vDTs~lRrAIWNYihc~fGiRyDDYDYgeiNqlLdr~~KvyIKtvaCyPeK~T~rmy~~Fwr~f~hsekvHVn 529 (553)
T KOG3746|consen 452 AMHNEVDTSALRRAIWNYIHCLFGIRYDDYDYGEINQLLDRGTKVYIKTVACYPEKLTSRMYIFFWRYFNHSEKVHVN 529 (553)
T ss_pred hhhccccHHHHHHHHHHHhheeeeeeecccchHHHHHHHhcCceEEEEEeeechHHHHHHHHHHHHHHhccccchhHH
Confidence 4456799999999999 9999999999999999999999999999999999999999999999999999999999963
No 6
>COG2128 Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.6e-14 Score=124.96 Aligned_cols=142 Identities=14% Similarity=0.221 Sum_probs=123.1
Q ss_pred cchhhHHHHHhcCcHHHHHH--HHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhcc---
Q psy17685 113 QKLDHVTQVMGYHPTYLNIF--LRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKG--- 187 (286)
Q Consensus 113 GrVpNV~~vla~~P~yL~~f--~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~g--- 187 (286)
|.+|...+ ....+.+++.+ ....+.++.+.+.|+..+||.|++.+|..|+|.||+..|....+..|.+++.+..
T Consensus 25 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~elv~~~~s~~ngc~~C~~~h~~~a~~~g~~~~~~~~~~~ 103 (177)
T COG2128 25 GEIPALIR-VLANSPLYLALAFAALENALLAGSGALPPVLRELVALRAARINGCAYCVAMHRKVARLLGLSADDLAALLA 103 (177)
T ss_pred cchhhhhh-cccchHHHHHHHHHHHHHHHHhcccCCCHHHhHHHHHHHHHHhcCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 66666655 33333566655 7788888888888999999999999999999999999998888999988876642
Q ss_pred ----cCCCCHHHHHHHHHHHHHccCCCC-CCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17685 188 ----LSYAPKKLGLLYEVNKILAHRPWL-LNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEE 255 (286)
Q Consensus 188 ----l~~ip~KlraL~~~n~~Lah~Pw~-I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe 255 (286)
-...++|+|+++.++..+|..|-. +.+++.+.|++.|+|.++|++++.+++.++..|++..++|+.++
T Consensus 104 ~~~~~~~~~~~e~a~L~~~~~~~~~~~~~~~~~~~~~lr~~g~~~~qi~el~~~i~~~~~~nr~~~al~~~~~ 176 (177)
T COG2128 104 WRDSAAFLDPRERAALAYAAALTINPCGAVSDAHFAALRAAGFDDEQILELVLAIALINAWNRLNAALGIPPD 176 (177)
T ss_pred cccCCccCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 256888999999999999999995 89999999999999999999999999999999999999998875
No 7
>PF02627 CMD: Carboxymuconolactone decarboxylase family; InterPro: IPR003779 The catechol and protocatechuate branches of the 3-oxoadipate pathway, which are important for the bacterial degradation of aromatic compounds, converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase (CMD) is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway [].; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 2GMY_E 2CWQ_C 2QEU_B 1P8C_D 1VKE_C 2OUW_A 2AF7_G 3D7I_A 1ME5_B 1KNC_A ....
Probab=98.76 E-value=1e-08 Score=76.85 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhccc------CCCCHHHHHHH
Q psy17685 126 PTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGL------SYAPKKLGLLY 199 (286)
Q Consensus 126 P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl------~~ip~KlraL~ 199 (286)
|++++.|..+...++..+|+||..+||+|++.+|..|+|.||+..|....+..|-+++-+..+ ..-.++.++..
T Consensus 1 P~~~~~~~~~~~~~~~~~~~L~~~~reli~la~s~~~~~~~c~~~H~~~a~~~G~t~eei~~~~~~~~~~~~~~~~~~a~ 80 (85)
T PF02627_consen 1 PELAEAFAEFREALLARDGGLDPKERELIALAVSAANGCAYCVKAHARAARKAGVTEEEIDEAVRWAAPYCGSPRERAAL 80 (85)
T ss_dssp HHHHHHHHHHHHHHHHSSSSS-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHccCCcHHHHHHH
Confidence 899999999999998877899999999999999999999999999999999999887655321 11234555555
Q ss_pred HHH
Q psy17685 200 EVN 202 (286)
Q Consensus 200 ~~n 202 (286)
+++
T Consensus 81 ~~a 83 (85)
T PF02627_consen 81 AAA 83 (85)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 8
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=98.47 E-value=2e-07 Score=65.01 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhh
Q psy17685 144 GPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWL 185 (286)
Q Consensus 144 g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl 185 (286)
|.||..+||+|++.+|..|+|.||+.+|....+..|.+++-+
T Consensus 1 g~l~~~~reli~l~~s~~~~C~yc~~~H~~~a~~~G~~~~ei 42 (50)
T TIGR00778 1 GALDAATKELIAIAVSQINGCGYCLDAHTKLARKAGVTAEEL 42 (50)
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 679999999999999999999999999999999999887643
No 9
>COG4950 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.27 E-value=7.6e-06 Score=73.13 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=102.7
Q ss_pred CCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhcccC-----CCCHHHHHHHHHHHHHccCCCCCCHHHH
Q psy17685 143 DGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGLS-----YAPKKLGLLYEVNKILAHRPWLLNPSHL 217 (286)
Q Consensus 143 ~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl~-----~ip~KlraL~~~n~~Lah~Pw~I~~~di 217 (286)
.+.++..+|--.|..+|..-+-.=+-.+.++.+-...|+++-..+.+ ....|++++.+++..|+.+|-.++.+-+
T Consensus 61 ~~~fs~~~R~slAl~va~~~~~~~L~~hY~arLap~p~~~~~~~~~~pd~~~es~~RLaai~~yar~L~~~P~~~~r~~l 140 (193)
T COG4950 61 PGTFSAYERLSLALTVAQVTGAQRLCAHYAARLAPLPGSESEPSGADPDAARESNERLAAITQYARLLASSPSDIDREAL 140 (193)
T ss_pred cCccchhHHHHHHHHHHHhhCchhhhHHHHHHhccCCCcccccccCCCcchhhhhHHHHHHHHHHHHHhcCcccCCHHHH
Confidence 58899999999999999988888888888888888888887776543 4678999999999999999999999999
Q ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC
Q psy17685 218 QKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEELD 257 (286)
Q Consensus 218 ~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe~D 257 (286)
+.|-+.|||..++|-...|++|.++-.++|.|+-.-.+.+
T Consensus 141 ~~L~~vGLta~DiVtLsqlI~Fv~yQ~rvvAglralr~~~ 180 (193)
T COG4950 141 ERLYDVGLTARDIVTLSQLIGFVGYQARVVAGLRALRGNP 180 (193)
T ss_pred HHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999986655544
No 10
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=97.65 E-value=0.00011 Score=65.53 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh
Q psy17685 142 GDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ 182 (286)
Q Consensus 142 ~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp 182 (286)
+.++||+..+|.|.+.||..|+|.||+.+|.+..+..|-.+
T Consensus 108 ~~~gLdk~~~ELI~LaVSqINGC~yCv~aHt~~ar~~Gvs~ 148 (177)
T TIGR00777 108 ANPGIPKVNFELWSFAVSAINGCGHCLDSHEHTLRTVGVDR 148 (177)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHcCCCH
Confidence 35789999999999999999999999999999999877554
No 11
>COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]
Probab=97.18 E-value=0.00097 Score=55.22 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=51.8
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh
Q psy17685 121 VMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ 182 (286)
Q Consensus 121 vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp 182 (286)
+-.-.|+.+..|. .+..+...+|.||...|++|+|.+++..+|.+|+..|.+.-+.+|-.+
T Consensus 27 ~~~~~p~~~~~~~-~~~~~~~~~~~Ld~ktr~Li~ia~~~a~~~~~~l~~H~~~Al~~GaT~ 87 (124)
T COG0599 27 FAPEFPELLEAFY-AFGEIWFRKGALDAKTRELIAIAVLAALGCEDCLKVHVRAALENGATK 87 (124)
T ss_pred HhHhhHHHHHHHH-HhhhHHhcCCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCH
Confidence 4556888888855 667777777899999999999999999999999999999988776444
No 12
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=94.69 E-value=0.17 Score=42.37 Aligned_cols=87 Identities=10% Similarity=0.081 Sum_probs=67.2
Q ss_pred HHhcCcHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhcc-------cCCCC
Q psy17685 121 VMGYHPTYLNIFLR-TQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKG-------LSYAP 192 (286)
Q Consensus 121 vla~~P~yL~~f~~-~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~g-------l~~ip 192 (286)
.-.+.|+..+-..+ .|..++.. +.|+..+|++|.|.+.+..+|..|+..|...-+..|-.|+-++. ....|
T Consensus 28 ~~~~~p~~~~~~~~~~fgdv~~r-~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P 106 (123)
T TIGR02425 28 TTDFDQPFQELITEYAWGTVWTR-PGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVP 106 (123)
T ss_pred ccccCHHHHHHHHHHHhhhhhcc-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 34567875544444 46666665 58999999999999999999999999999999999988866643 25677
Q ss_pred HHHHHHHHHHHHHccC
Q psy17685 193 KKLGLLYEVNKILAHR 208 (286)
Q Consensus 193 ~KlraL~~~n~~Lah~ 208 (286)
.=..++...++.+..+
T Consensus 107 ~a~~al~~~~~v~~e~ 122 (123)
T TIGR02425 107 AANHAFALAKEALAEM 122 (123)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7777777777776544
No 13
>TIGR02425 decarb_PcaC 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus.
Probab=92.36 E-value=0.2 Score=41.96 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17685 189 SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVN 253 (286)
Q Consensus 189 ~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~ 253 (286)
..+|.|.|.|..++...|..-..--+.|+...++.|+|..||.+++..++.|--..+...++.+.
T Consensus 51 ~~Ld~k~R~Litla~laa~g~~~~l~~h~~~Al~~G~T~~ei~Evl~q~~~y~G~P~a~~al~~~ 115 (123)
T TIGR02425 51 PGLTKRERSLVTIALLAALGRDEELAMHVRATANTGVTEDDIKEVLLHVAIYAGVPAANHAFALA 115 (123)
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57999999999999999987654455888888889999999999999999997777776665543
No 14
>COG0599 Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]
Probab=90.79 E-value=0.66 Score=38.32 Aligned_cols=62 Identities=15% Similarity=0.014 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17685 190 YAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACG 251 (286)
Q Consensus 190 ~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~G 251 (286)
.+|.|.|.|.-++...+.+-..-.+-|++.-++.|=|.+||.+++.+++.+.....+..+..
T Consensus 50 ~Ld~ktr~Li~ia~~~a~~~~~~l~~H~~~Al~~GaT~eEI~e~i~~~a~~~g~p~~~~a~~ 111 (124)
T COG0599 50 ALDAKTRELIAIAVLAALGCEDCLKVHVRAALENGATKEEIAEAIAVAAIYAGGPAAANAFR 111 (124)
T ss_pred CCCHHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 69999999999999999999998999999888789999999999999999977666655543
No 15
>PF02627 CMD: Carboxymuconolactone decarboxylase family; InterPro: IPR003779 The catechol and protocatechuate branches of the 3-oxoadipate pathway, which are important for the bacterial degradation of aromatic compounds, converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase (CMD) is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway [].; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 2GMY_E 2CWQ_C 2QEU_B 1P8C_D 1VKE_C 2OUW_A 2AF7_G 3D7I_A 1ME5_B 1KNC_A ....
Probab=89.69 E-value=0.83 Score=33.67 Aligned_cols=62 Identities=15% Similarity=-0.048 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q psy17685 189 SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFAC 250 (286)
Q Consensus 189 ~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~ 250 (286)
..+|+|.|.|..++.-.+..--.-...|...+++.|.|.+||.+++.+...+....+...++
T Consensus 19 ~~L~~~~reli~la~s~~~~~~~c~~~H~~~a~~~G~t~eei~~~~~~~~~~~~~~~~~~a~ 80 (85)
T PF02627_consen 19 GGLDPKERELIALAVSAANGCAYCVKAHARAARKAGVTEEEIDEAVRWAAPYCGSPRERAAL 80 (85)
T ss_dssp SSS-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCchHHHHHHHHHHHcCCCHHHHHHHHHHHHccCCcHHHHHHH
Confidence 45999999999999888866555348999999999999999999999999998877776554
No 16
>TIGR00778 ahpD_dom alkylhydroperoxidase AhpD family core domain. Members of the family include the alkylhydroperoxidase AhpD of Mycobacterium tuberculosis, a macrophage infectivity potentiator peptide of Legionella pneumophila, and an uncharacterized peptide in the tetrachloroethene reductive dehalogenase operon of Dehalospirillum multivorans. We suggest that many peptides containing this domain may have alkylhydroperoxidase or related antioxidant activity.
Probab=75.95 E-value=6.5 Score=26.82 Aligned_cols=47 Identities=17% Similarity=0.020 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHH
Q psy17685 190 YAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVL 236 (286)
Q Consensus 190 ~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~I 236 (286)
.+|+|+|.|..++.-.+.+=.--...|...+++.|.|.+||.+++.+
T Consensus 2 ~l~~~~reli~l~~s~~~~C~yc~~~H~~~a~~~G~~~~ei~~v~~~ 48 (50)
T TIGR00778 2 ALDAATKELIAIAVSQINGCGYCLDAHTKLARKAGVTAEELAEALAW 48 (50)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47999999999999888887777778888899999999999988754
No 17
>PF10778 DehI: Halocarboxylic acid dehydrogenase DehI; InterPro: IPR019714 Haloacid dehalogenases catalyse the removal of halides from organic haloacids. The 2-haloacid dehalogenase DehI can process both L- and D-substrates. A crucial aspartate residue is predicted to activate a water molecule for nucleophilic attack of the substrate chiral centre resulting in an inversion of the configuration of either L- or D-substrates in contrast to D-only enzymes []. ; GO: 0019120 hydrolase activity, acting on acid halide bonds, in C-halide compounds; PDB: 3BJX_A.
Probab=73.63 E-value=17 Score=31.94 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHHCCCChHHHHHHHHHHHHHHHHHH
Q psy17685 218 QKLTKNGWSLGELCHALVLLVNFHSLAS 245 (286)
Q Consensus 218 ~~L~~~gWS~~ELv~Av~Ila~fhsl~~ 245 (286)
..|++.|||.+|+=++-.++..||..|.
T Consensus 58 ~~L~a~g~~~~ei~~i~~vl~~F~~gnP 85 (159)
T PF10778_consen 58 RDLLAAGYSEAEIAEIRAVLDLFNYGNP 85 (159)
T ss_dssp HHHHHTT--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHccCH
Confidence 3588899999999999999999998764
No 18
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=72.17 E-value=75 Score=28.64 Aligned_cols=126 Identities=17% Similarity=0.007 Sum_probs=80.7
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHH--HHHHhhccCCcchHHHHHHHH-------------------------
Q psy17685 122 MGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHY--IAIMAAGRHQCSYLINLQKEE------------------------- 174 (286)
Q Consensus 122 la~~P~yL~~f~~~~~~Lm~~~g~Lp~~eRey--IAImaSa~n~C~Ycv~~H~a~------------------------- 174 (286)
-..-|+|.+----=...++ .++.|+..++.. +|...|++|. -.+..-.++
T Consensus 6 k~~lp~yakD~~lNl~~~~-~~~~L~~~q~~g~~lA~A~A~~~~--~~~~~i~~ea~~~ls~~~~~aa~~aas~MamnNv 82 (177)
T TIGR00777 6 KAALPDYAKDLKLNLSSIT-RSSVLDQEQLWGTLLASAAATRNP--QVLRDIGAEATAHLSAEARHAALGAAAIMAMNNV 82 (177)
T ss_pred HhhChHHHHHHHhhhhhhc-ccCCCCHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhhhH
Confidence 4456777765433333444 468899998884 4445555555 555444432
Q ss_pred ---HHhccCChhhhc---c-------cCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHH
Q psy17685 175 ---FLSQGGDQDWLK---G-------LSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFH 241 (286)
Q Consensus 175 ---f~~~gGDp~wl~---g-------l~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fh 241 (286)
|++..+|+++-. | -..+|++++.+..++.=-...=......|-..+++.|-|.++|.+++=|.+..|
T Consensus 83 ~Yr~~hl~~~~~y~~~pa~lrmn~i~~~gLdk~~~ELI~LaVSqINGC~yCv~aHt~~ar~~Gvs~e~I~~a~riaavi~ 162 (177)
T TIGR00777 83 FYRGRHLLEGARYDDLRPGLRMNIIANPGIPKVNFELWSFAVSAINGCGHCLDSHEHTLRTVGVDREAIQEALKIAAVVS 162 (177)
T ss_pred HHHhHhhcccchhhcCCccchhHHhhcCCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 334445544332 1 134677776666666555555555556777788889999999999999999999
Q ss_pred HHHHHHHhc
Q psy17685 242 SLASFVFAC 250 (286)
Q Consensus 242 sl~~fv~G~ 250 (286)
++....-+-
T Consensus 163 a~a~~l~~~ 171 (177)
T TIGR00777 163 AVAQTLAAE 171 (177)
T ss_pred HHHHHHHHH
Confidence 988766543
No 19
>PF04180 LTV: Low temperature viability protein ; InterPro: IPR007307 The low-temperature viability protein LTV1 was identified in Saccharomyces cerevisiae, the exact function of this protein is unknown.
Probab=68.98 E-value=2.1 Score=42.85 Aligned_cols=16 Identities=44% Similarity=0.654 Sum_probs=14.3
Q ss_pred HHhhhhccccC--CCchh
Q psy17685 47 DLLFAGIRHDD--YDYGE 62 (286)
Q Consensus 47 ~~~~~gir~dd--y~y~~ 62 (286)
-.+.|||-||| |||.+
T Consensus 62 Eaa~YGIyfDDs~YDYmQ 79 (421)
T PF04180_consen 62 EAAKYGIYFDDSDYDYMQ 79 (421)
T ss_pred HHHHhCCccCcccccHHH
Confidence 57899999999 99976
No 20
>PRK13291 metal-dependent hydrolase; Provisional
Probab=47.72 E-value=52 Score=28.68 Aligned_cols=29 Identities=17% Similarity=0.393 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17685 223 NGWSLGELCHALVLLVNFHSLASFVFACGV 252 (286)
Q Consensus 223 ~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi 252 (286)
.+||+.||++=++-.. .+..-++..+.+-
T Consensus 55 gkWSi~Evl~HL~D~e-~~~~~rl~~a~~~ 83 (173)
T PRK13291 55 GGWTVRQVVHHVADSH-MNAYIRFKLALTE 83 (173)
T ss_pred CCCcHHHHHHHHHHHH-HHHHHHHHHHHcc
Confidence 7899999999887533 5566666666644
No 21
>PF08108 Antimicrobial13: Halocidin family; InterPro: IPR012516 This family consists of the halocidin family of antimicrobial peptides. Halocidins are isolated from the haemocytes of the tunicate, Halocynthia aurantium (Sea peach). They are dimeric in structures, which are found via a disulphide linkage between cysteines of two different- sized monomers. Halocidins have been shown to have strong antimicrobial activities against a wide variety of pathogenic bacteria and could be ideal candidates as peptide antibiotics against multidrug-resistant bacteria [].; GO: 0042742 defense response to bacterium
Probab=47.46 E-value=3.3 Score=22.75 Aligned_cols=9 Identities=78% Similarity=1.106 Sum_probs=7.0
Q ss_pred HHHHHhhhc
Q psy17685 9 ALLHHALNF 17 (286)
Q Consensus 9 ~~~~~~~~~ 17 (286)
|||||.||-
T Consensus 1 allhhglnc 9 (15)
T PF08108_consen 1 ALLHHGLNC 9 (15)
T ss_pred Cccccccch
Confidence 578998884
No 22
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=42.34 E-value=1.7e+02 Score=31.31 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=74.5
Q ss_pred cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCH-----------HHHHHHHHH----hhccCCcchHHHHHHHHHHh
Q psy17685 113 QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSY-----------EYRHYIAIM----AAGRHQCSYLINLQKEEFLS 177 (286)
Q Consensus 113 GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~-----------~eReyIAIm----aSa~n~C~Ycv~~H~a~f~~ 177 (286)
.|+.....++..+|++-+.+.+....++.+-...|. =.+|+--=+ --+...=.++.......|.
T Consensus 33 ~rl~~Ll~~L~~~p~~~~~l~~~l~~~l~~~~~~~L~~d~Gi~~~~gF~~El~~Rl~~r~lP~~~d~~~l~~lf~~lF~- 111 (643)
T PF10136_consen 33 ARLRALLDVLERNPELRAALRRYLRRLLRERRQYPLLTDSGILSRSGFFSELSRRLYERLLPAPPDPNDLSDLFNLLFP- 111 (643)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCCccHHHHHHHHHHhhcCCCCCChhHHHHHHHHHCC-
Confidence 678888889999999999888887777765322111 011111111 1122333445555554443
Q ss_pred ccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHH-HHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy17685 178 QGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHL-QKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEEL 256 (286)
Q Consensus 178 ~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di-~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe~ 256 (286)
...|.+|++ .+|++ .+.++..+| .+....+++. ... ..|+++|+.++++= +.|.|++||.
T Consensus 112 ~~~D~~Wl~---ai~~~--~w~~L~~lL--~~~~~~~~~~~~~~------~~~ll~Ai~~Ls~~------I~a~glepel 172 (643)
T PF10136_consen 112 RPSDAEWLE---AIPDE--TWLRLFELL--GAEEEEDQDASPHW------RQELLDAIEMLSYR------IAAEGLEPEL 172 (643)
T ss_pred CCCcHHHHH---hCCHH--HHHHHHHHh--CcCccccchhHHHH------HHHHHHHHHHHHHH------HHhcccCHHH
Confidence 347889994 55543 244555555 3333333332 333 36899999888766 8899999987
Q ss_pred CCC
Q psy17685 257 DSL 259 (286)
Q Consensus 257 D~~ 259 (286)
-.-
T Consensus 173 ~r~ 175 (643)
T PF10136_consen 173 RRR 175 (643)
T ss_pred Hhh
Confidence 543
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=41.65 E-value=1e+02 Score=23.75 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=34.5
Q ss_pred cCCCCCCHHHHHHHH-HCCCChHHHHHHHHH--------------HHHHHHHHHHHHhcCCCCCcCCC
Q psy17685 207 HRPWLLNPSHLQKLT-KNGWSLGELCHALVL--------------LVNFHSLASFVFACGVNEELDSL 259 (286)
Q Consensus 207 h~Pw~I~~~di~~L~-~~gWS~~ELv~Av~I--------------la~fhsl~~fv~G~Gi~pe~D~~ 259 (286)
...-.|+.+++..++ ..|++.+++-++... +..++.+.+...|.-|.+|.|..
T Consensus 22 d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~~~~~~ 89 (96)
T smart00027 22 NQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPASLPPS 89 (96)
T ss_pred CCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCccCCHh
Confidence 455566666655443 366666665554432 56677778888899999888864
No 24
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=38.87 E-value=65 Score=32.18 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHH-----------HccCCCCCCHHHHHHHHH
Q psy17685 192 PKKLGLLYEVNKI-----------LAHRPWLLNPSHLQKLTK 222 (286)
Q Consensus 192 p~KlraL~~~n~~-----------Lah~Pw~I~~~di~~L~~ 222 (286)
++++..+.+..+. +.-+|..++++.++.|++
T Consensus 118 ~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~ 159 (455)
T TIGR00538 118 PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRD 159 (455)
T ss_pred HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHH
Confidence 6788888887765 346788999999999988
No 25
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=34.01 E-value=33 Score=22.34 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHCCCChHHHHHHHH
Q psy17685 212 LNPSHLQKLTKNGWSLGELCHALV 235 (286)
Q Consensus 212 I~~~di~~L~~~gWS~~ELv~Av~ 235 (286)
|+++.++.|++-|++..+..+|+.
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~ 24 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALR 24 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHH
Confidence 467888889988999887777763
No 26
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=33.84 E-value=55 Score=22.23 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=19.1
Q ss_pred CCCCCCH---HHHHHHHHCCCChHHHHHHH
Q psy17685 208 RPWLLNP---SHLQKLTKNGWSLGELCHAL 234 (286)
Q Consensus 208 ~Pw~I~~---~di~~L~~~gWS~~ELv~Av 234 (286)
||-.+++ +++-.|.++|.|+++|-...
T Consensus 2 Rp~~~~~~~~~~i~~l~~~G~si~~IA~~~ 31 (45)
T PF02796_consen 2 RPPKLSKEQIEEIKELYAEGMSIAEIAKQF 31 (45)
T ss_dssp SSSSSSHCCHHHHHHHHHTT--HHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 5667777 56677777999999998765
No 27
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=33.58 E-value=1.3e+02 Score=24.34 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCc-chHHHHHHHHHHhccC---C-hhhhcccCC-C-CHHHHHHHHH
Q psy17685 129 LNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQC-SYLINLQKEEFLSQGG---D-QDWLKGLSY-A-PKKLGLLYEV 201 (286)
Q Consensus 129 L~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C-~Ycv~~H~a~f~~~gG---D-p~wl~gl~~-i-p~KlraL~~~ 201 (286)
..+..+.--.++..||.++..|+++|.=+.+..... ......-.+.+..... + .++++.+.. + ++.-..+++.
T Consensus 23 ~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~ 102 (140)
T PF05099_consen 23 REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRM 102 (140)
T ss_dssp HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHH
Confidence 777788888889999999999999998777666553 2232322222222211 1 244444544 2 3445567888
Q ss_pred HHHHccCCCCCCHHHHHHHHH----CCCChHHH
Q psy17685 202 NKILAHRPWLLNPSHLQKLTK----NGWSLGEL 230 (286)
Q Consensus 202 n~~Lah~Pw~I~~~di~~L~~----~gWS~~EL 230 (286)
+..++..-..+++++.+-|.+ -|.+.++.
T Consensus 103 l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~ 135 (140)
T PF05099_consen 103 LIAIAYADGEISPEEQEFLRRIAEALGISEEDF 135 (140)
T ss_dssp HHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS--
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 888888888888877766665 45554443
No 28
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=32.16 E-value=62 Score=27.11 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=35.9
Q ss_pred cCChhhhcccCCCC----HHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHH
Q psy17685 179 GGDQDWLKGLSYAP----KKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHAL 234 (286)
Q Consensus 179 gGDp~wl~gl~~ip----~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av 234 (286)
|-+.+.+..+-.|+ .|++.+.++-+.|....-.++++.+....+.|||+..|-+..
T Consensus 23 G~sveeI~e~T~ID~wFL~~i~~Iv~~e~~L~~~~~~~~~~~L~~aK~~GFsD~~IA~l~ 82 (123)
T PF02787_consen 23 GYSVEEIHELTKIDPWFLEQIKNIVDMEKELKEYLNELDPELLRKAKRLGFSDRQIARLW 82 (123)
T ss_dssp TB-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHGGG--HHHHHHHHHTT--HHHHHHHH
T ss_pred CCCHHHHHHHHCccHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHcCCCHHHHHhcc
Confidence 44444443334444 499999999999998766677788888888999999987765
No 29
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=28.64 E-value=56 Score=25.80 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHH
Q psy17685 188 LSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHAL 234 (286)
Q Consensus 188 l~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av 234 (286)
-+++|.==|+..+|-+.-=...+.+..-.+..|++.|||.+-|.--+
T Consensus 12 p~DiP~ipra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl 58 (77)
T PF10911_consen 12 PDDIPDIPRAAAEYLQVRFNAAYLMASGIISALRKQGWSESYILGFL 58 (77)
T ss_pred CcccCCccHHHHHHHHHHhcHHHHHHhhhHHHHHHccccHHHHHHHH
Confidence 35677666777777776666666777779999999999999775443
No 30
>PHA00438 hypothetical protein
Probab=28.58 E-value=29 Score=27.51 Aligned_cols=44 Identities=14% Similarity=0.142 Sum_probs=33.3
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHH
Q psy17685 188 LSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELC 231 (286)
Q Consensus 188 l~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv 231 (286)
-.++|.==|+..++-...=...+.+..-+|..||++|||.+-|.
T Consensus 12 p~DiPdvpraa~eyLqvrfNasYl~~sG~i~~lR~~G~SE~~Ia 55 (81)
T PHA00438 12 PNDIPDVPRAAAEYLQVRFNASYLEQSGEIRLLRQAGYSEAFIA 55 (81)
T ss_pred CcccccccHHHHHHHHHHHhHHHHHHhhhHHHHHHcCCcHHHHH
Confidence 35667666677777666666677777789999999999998664
No 31
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=28.42 E-value=33 Score=27.56 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=32.1
Q ss_pred HHccCCCCCCHHH-HHHHHHCCCChHHHHHHHHHHHHH
Q psy17685 204 ILAHRPWLLNPSH-LQKLTKNGWSLGELCHALVLLVNF 240 (286)
Q Consensus 204 ~Lah~Pw~I~~~d-i~~L~~~gWS~~ELv~Av~Ila~f 240 (286)
-|+..|-+|.+++ ++.|+.-|.=+.+|.|.++|+|-.
T Consensus 4 ~~~~sp~ei~Eet~~e~llRYGLf~GAIFQliCilAiI 41 (85)
T PF06783_consen 4 ELDFSPPEIPEETFFENLLRYGLFVGAIFQLICILAII 41 (85)
T ss_pred cccCCCccCCcchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 4667888999988 688888999999999999999876
No 32
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=27.80 E-value=83 Score=27.16 Aligned_cols=50 Identities=22% Similarity=0.395 Sum_probs=37.3
Q ss_pred ccCCCCCCHHHHHHHHH----CCCChHHHHHHHH----HHHHHHHHHHHHHhcCCCCC
Q psy17685 206 AHRPWLLNPSHLQKLTK----NGWSLGELCHALV----LLVNFHSLASFVFACGVNEE 255 (286)
Q Consensus 206 ah~Pw~I~~~di~~L~~----~gWS~~ELv~Av~----Ila~fhsl~~fv~G~Gi~pe 255 (286)
-.+|-.+++++++.|+. .-|+..++..++. |--..-++.+|+..+|++..
T Consensus 58 ~GrP~kl~~~q~~~l~e~~~~k~wTl~~~~~~l~~e~gv~y~~~~v~~~l~~~Glsyk 115 (138)
T COG3415 58 KGRPRKLSEEQLEILLERLREKDWTLKELVEELGLEFGVWYHASAVRRLLHELGLSYK 115 (138)
T ss_pred CCCCcccCHHHHHHHHHHHhcccchHHHHHHHHhhhcCeEEeHHHHHHHHHHcCCCcC
Confidence 37899999998888776 4499999988754 22222388999999988743
No 33
>COG4154 FucU Fucose dissimilation pathway protein FucU [Carbohydrate transport and metabolism]
Probab=23.38 E-value=93 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=40.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhcc
Q psy17685 135 TQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQG 179 (286)
Q Consensus 135 ~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~g 179 (286)
.+...|.+++-+|.-||||.+...++.-+|.-.+..-+..|.+..
T Consensus 72 ~~m~~v~~~d~~p~V~~e~~~~i~~aeg~~~p~~~ierfaFYeRa 116 (144)
T COG4154 72 VFMAVVEGDDLDPPVEREYRAAIELAEGKCPPIVPIERFAFYERA 116 (144)
T ss_pred HHHHhhcCCCCCchHHHHHHHHHHhcCCCCCCeeeehHHHHHHHH
Confidence 456788999999999999999999999999999999999998754
No 34
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=21.55 E-value=67 Score=30.14 Aligned_cols=78 Identities=14% Similarity=0.341 Sum_probs=52.5
Q ss_pred CCCchhhhHH----HhHhHHhHhhcccCCc-cccCch-hhhhhhhccCCChhhhhccccccc-----cchhh------HH
Q psy17685 57 DYDYGEVNQL----LERSLKSFIKTTACYP-ERMTSE-EYNNVLKEFHHSEKSQLYSDDTFL-----QKLDH------VT 119 (286)
Q Consensus 57 dy~y~~vn~l----l~~~~k~~iK~vaC~P-ermTk~-~~~s~L~~~~~~Ek~q~Lf~eaf~-----GrVpN------V~ 119 (286)
||=|.-+.++ +++.+.+|.+...|.| ++++.+ -+.. .+.+-.+-|+...++++ |-+|| ++
T Consensus 69 eFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~---~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 69 EFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA---EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH---HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4445555555 3677999999999999 665543 2222 33444455656666554 99998 67
Q ss_pred HHHhcCcHHHHHHHHHHH
Q psy17685 120 QVMGYHPTYLNIFLRTQN 137 (286)
Q Consensus 120 ~vla~~P~yL~~f~~~~~ 137 (286)
.+++..-.-++.+.++..
T Consensus 146 ~iFG~~s~p~~K~~rmmY 163 (228)
T PF06239_consen 146 NIFGRKSHPMKKYRRMMY 163 (228)
T ss_pred HHhccccHHHHHHHHHHH
Confidence 888988888888877543
Done!