Query psy17685
Match_columns 286
No_of_seqs 170 out of 257
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 20:18:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c1l_A Putative antioxidant de 100.0 2.3E-29 8E-34 216.6 13.7 160 98-257 15-182 (188)
2 2pfx_A Uncharacterized peroxid 100.0 2.4E-29 8E-34 217.4 12.9 160 98-257 18-185 (191)
3 2oyo_A Uncharacterized peroxid 100.0 1.1E-28 3.6E-33 214.4 12.4 159 98-256 23-189 (196)
4 2prr_A Alkylhydroperoxidase AH 100.0 2E-28 7E-33 212.7 12.6 160 98-257 19-186 (197)
5 3lvy_A Carboxymuconolactone de 99.9 4.5E-26 1.5E-30 201.6 16.9 159 98-258 33-200 (207)
6 2gmy_A Hypothetical protein AT 99.9 4.3E-21 1.5E-25 161.0 14.1 136 121-259 7-149 (153)
7 2o4d_A Hypothetical protein PA 99.8 1.2E-20 4.2E-25 161.1 13.1 132 121-255 27-165 (165)
8 2ouw_A Alkylhydroperoxidase AH 99.7 1.5E-17 5E-22 136.6 11.7 113 101-258 17-133 (138)
9 2cwq_A Hypothetical protein TT 99.4 5.7E-13 1.9E-17 110.7 8.7 106 100-250 22-131 (137)
10 2qeu_A Putative carboxymuconol 99.2 3.2E-11 1.1E-15 100.3 8.0 93 113-251 26-123 (141)
11 3bey_A Conserved protein O2701 99.1 2.9E-10 9.9E-15 87.7 9.9 65 116-181 3-67 (96)
12 3d7i_A Carboxymuconolactone de 99.1 4.5E-10 1.5E-14 88.4 10.4 91 116-251 10-100 (105)
13 1p8c_A Conserved hypothetical 98.9 7.8E-09 2.7E-13 87.1 10.4 86 117-248 35-120 (145)
14 1vke_A Carboxymuconolactone de 98.8 2.2E-08 7.7E-13 83.2 9.7 62 120-182 28-89 (133)
15 2q0t_A Putative gamma-carboxym 98.8 3.3E-08 1.1E-12 89.1 11.5 148 102-251 10-245 (263)
16 2q0t_A Putative gamma-carboxym 98.4 5.7E-07 2E-11 80.9 7.5 95 113-208 151-254 (263)
17 2af7_A Gamma-carboxymuconolact 98.0 7.4E-06 2.5E-10 66.3 5.2 83 122-205 27-116 (125)
18 1gu9_A Alkylhydroperoxidase D; 97.9 8.7E-06 3E-10 71.1 4.3 44 142-185 108-151 (177)
19 3bjx_A Halocarboxylic acid deh 97.8 6.1E-07 2.1E-11 84.5 -5.3 76 98-174 180-260 (311)
20 1gu9_A Alkylhydroperoxidase D; 97.6 0.00044 1.5E-08 60.3 11.4 126 122-249 7-170 (177)
21 4g9q_A 4-carboxymuconolactone 97.1 0.012 4.3E-07 54.1 14.4 111 136-247 62-254 (269)
22 3bjx_A Halocarboxylic acid deh 96.8 0.0011 3.7E-08 62.5 4.7 103 94-246 25-131 (311)
23 4g9q_A 4-carboxymuconolactone 91.1 0.78 2.7E-05 42.1 8.5 64 189-252 69-132 (269)
24 2af7_A Gamma-carboxymuconolact 87.8 1.3 4.4E-05 35.1 6.6 65 189-253 49-113 (125)
25 2ooa_A E3 ubiquitin-protein li 68.5 5.7 0.00019 28.1 3.8 29 209-237 7-35 (52)
26 2oo9_A E3 ubiquitin-protein li 67.1 5.4 0.00018 27.5 3.4 24 214-237 5-28 (46)
27 2juj_A E3 ubiquitin-protein li 63.8 6.6 0.00023 28.1 3.4 27 211-237 5-31 (56)
28 2d9s_A CBL E3 ubiquitin protei 61.1 8.5 0.00029 27.3 3.6 30 208-237 4-33 (53)
29 1c52_A Cytochrome-C552; electr 36.1 42 0.0014 26.0 4.4 42 192-233 77-124 (131)
30 2ksn_A Ubiquitin domain-contai 25.5 53 0.0018 27.4 3.4 56 211-266 32-106 (137)
31 2h5n_A Hypothetical protein PG 24.4 2.6E+02 0.0089 22.0 8.2 109 122-234 11-127 (133)
No 1
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics, joint center for structural genomics, J protein structure initiative; 2.00A {Mesorhizobium loti}
Probab=99.96 E-value=2.3e-29 Score=216.58 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=148.0
Q ss_pred CCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEF 175 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f 175 (286)
..++.++.++..... |+|||++++++++|+.+++|+.+++.++..+|+||..+||+|++.+|..|+|.||+.+|....
T Consensus 15 ~~~~~~~~~~~~~~~~~G~vpn~~~~l~~~P~~~~~~~~l~~~~~~~~~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a 94 (188)
T 3c1l_A 15 ELSEPTKAYFAKCEEKLGLVPNVLKAYAFDDKKLRAFTDIYNDLMLGESGLSKLDREMIAVAVSSINHCYYCLTAHGAAV 94 (188)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHTTCHHHHHHHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 557788878777654 999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhccCChhhhcccC------CCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy17685 176 LSQGGDQDWLKGLS------YAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFA 249 (286)
Q Consensus 176 ~~~gGDp~wl~gl~------~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G 249 (286)
+..|.+++.++.+. ..++|+|++++|+..+|..|+.++++++++|+++|||++||++++.++++||++|++..+
T Consensus 95 ~~~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ia~~~~~nr~~~~ 174 (188)
T 3c1l_A 95 RQLSGDPALGEMLVMNFRAADLSPRQTAMLEFAVKLTEEPAKIVEADRAALRKAGFSDRDIWDIASTAAFFNMSNRVAAA 174 (188)
T ss_dssp HHHHSCHHHHHHHHHCGGGGCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996665432 589999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcC
Q psy17685 250 CGVNEELD 257 (286)
Q Consensus 250 ~Gi~pe~D 257 (286)
+|+.++.+
T Consensus 175 ~~~~~d~~ 182 (188)
T 3c1l_A 175 IDMRPNDE 182 (188)
T ss_dssp HTCCCCGG
T ss_pred hCCCCChH
Confidence 99987643
No 2
>2pfx_A Uncharacterized peroxidase-related protein; YP_614459.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE PG4; 1.70A {Silicibacter SP} SCOP: a.152.1.3
Probab=99.96 E-value=2.4e-29 Score=217.38 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=147.5
Q ss_pred CCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEF 175 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f 175 (286)
..++.++.++..... |+|||++++++++|+.+++|..+++.++..+|+||..+||+|++.+|..|+|.||+.+|....
T Consensus 18 ~~~~~~~~~~~~~~~~~G~vpn~~~~l~~~P~~~~~~~~l~~~~~~~~~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a 97 (191)
T 2pfx_A 18 PLPDETQKYFEICQEKLGMVPNVLKAYAFNVEKLNAFTAMYNDLMLGESQLSKLEREMIAVVVSSINKCFYCLVAHGAAV 97 (191)
T ss_dssp SCCHHHHHHHHHHHHHHSSCCHHHHHHTTSHHHHHHHHHHHHHHHHSSCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHHcCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 446777777776644 999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhccCChhhhccc------CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy17685 176 LSQGGDQDWLKGL------SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFA 249 (286)
Q Consensus 176 ~~~gGDp~wl~gl------~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G 249 (286)
+..|.+++.++.+ ...++|+|++++|+..+|..|+.++++++++|+++|||++||++++.++++||++|++..+
T Consensus 98 ~~~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ia~~~~~nr~~~~ 177 (191)
T 2pfx_A 98 RQLSGDPQLGEMLVMNYRVAPLDARQRVMLDFAAKMTRASAEIEEADREVLRSHGFNDRDIWDIANVTGFFNMTNRVASA 177 (191)
T ss_dssp HHHHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999666543 2589999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcC
Q psy17685 250 CGVNEELD 257 (286)
Q Consensus 250 ~Gi~pe~D 257 (286)
+|+.++.+
T Consensus 178 ~~~~~d~~ 185 (191)
T 2pfx_A 178 TAMMPNAE 185 (191)
T ss_dssp HTCCCCGG
T ss_pred hCCCCChH
Confidence 99987643
No 3
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=99.96 E-value=1.1e-28 Score=214.38 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=146.8
Q ss_pred CCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEF 175 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f 175 (286)
..++.++.++..+.. |+|||++++++++|+.+++|+.+++.++..+|+||..+||+|++.+|..|+|.||+.+|....
T Consensus 23 ~~~~~~~~~~~~~~~~~G~vpn~~~~la~~P~~~~~~~~l~~~~~~~~~~L~~~~rEli~l~vs~~ngC~yC~~~H~~~a 102 (196)
T 2oyo_A 23 QVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAAL 102 (196)
T ss_dssp GSCHHHHHHHHHHHHHHSSCCTHHHHGGGSHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCcHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456777777777654 999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhccCChhhhccc------CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy17685 176 LSQGGDQDWLKGL------SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFA 249 (286)
Q Consensus 176 ~~~gGDp~wl~gl------~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G 249 (286)
+..|.+++.++.+ ...++|+|++++|+..++..|+.++++++++|+++|||++||++++.++++||++|++..+
T Consensus 103 ~~~G~~~~~i~~l~~~~~~~~~~~~e~a~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ia~~~~~nr~~~~ 182 (196)
T 2oyo_A 103 REFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDHQIMELVQVIGMFNLTNRVSSA 182 (196)
T ss_dssp HHHHTCHHHHHHHHHCGGGSCCCHHHHHHHHHHHHHHHCGGGCCGGGGHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999655433 2689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc
Q psy17685 250 CGVNEEL 256 (286)
Q Consensus 250 ~Gi~pe~ 256 (286)
+|+.++.
T Consensus 183 ~~~~~d~ 189 (196)
T 2oyo_A 183 LGFVPNP 189 (196)
T ss_dssp TTCCCCH
T ss_pred cCCCCCH
Confidence 9998764
No 4
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=99.95 E-value=2e-28 Score=212.74 Aligned_cols=160 Identities=11% Similarity=0.133 Sum_probs=147.0
Q ss_pred CCChhhhhccccccc--cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL--QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEF 175 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~--GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f 175 (286)
..++.++.++..+.. |+|||++++|+++|+.+++|+.+++.++..+|+||..+||+|++.+|..|+|.||+.+|....
T Consensus 19 ~~~~~~~~~~~~~~~~~G~vpn~~~~l~~~P~~~~~~~~l~~~~~~~~~~L~~~~rELi~l~vs~~ngC~yC~~~H~~~a 98 (197)
T 2prr_A 19 ALPDDIRQRILEVQDKAGFVPNVFLTLAHRPDEFRAFFAYHDALMLKDGGLTKGEREMIVVATSAANQCLYCVVAHGAIL 98 (197)
T ss_dssp GSCHHHHHHHHHHHHHHSSCCHHHHHHTTSHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHcCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 446677777776654 999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HhccCChhhhccc------CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHh
Q psy17685 176 LSQGGDQDWLKGL------SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFA 249 (286)
Q Consensus 176 ~~~gGDp~wl~gl------~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G 249 (286)
+..|.+++.++.+ ...++|+|++++|+..+|..|..++++++++|+++|||++||++++.++++||++|++..+
T Consensus 99 ~~~G~~~~~i~~l~~~~~~~~~~~~era~l~~a~~lt~~~~~v~d~~~~~l~~~G~s~~ei~el~~~ia~~~~~nr~~~~ 178 (197)
T 2prr_A 99 RIYEKKPLVADQVAVNYLKADIPPRQRAMLDFALKVCKASHEVNEADFEALREHGFTDEDAWDIAAITAFFGLSNRMANT 178 (197)
T ss_dssp HHHHTCTTHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999665433 2689999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcC
Q psy17685 250 CGVNEELD 257 (286)
Q Consensus 250 ~Gi~pe~D 257 (286)
+|+.++.+
T Consensus 179 ~~~~~d~~ 186 (197)
T 2prr_A 179 IGMRPNDE 186 (197)
T ss_dssp HTCCCCHH
T ss_pred cCCCCChh
Confidence 99987744
No 5
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=99.94 E-value=4.5e-26 Score=201.61 Aligned_cols=159 Identities=10% Similarity=0.043 Sum_probs=142.3
Q ss_pred CCChhhhhccccccc---cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL---QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEE 174 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~---GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~ 174 (286)
..+++++.++..+.. |+|||++++|+++|+.+++|..+++.+. +|.||+.+||+|++.+|..|+|.||+.+|.+.
T Consensus 33 ~a~~~~~~~~~~~~~~~~G~vpn~~~~la~~P~~l~a~~~l~~~l~--~~~L~~~~rELi~l~vS~~ngC~yC~~~H~~~ 110 (207)
T 3lvy_A 33 TAPERVKETLRTVKKDNGGYIPNLIGLLANAPTALETYRTVGEINR--RNSLTPTEREVVQITAAVTNGCAFCVAGHTAF 110 (207)
T ss_dssp TSCHHHHHHHHHHHHHTTSCCCHHHHHHTTSHHHHHHHHHHHHHHH--TSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCChHHHHHHHhCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 567888888877643 9999999999999999999999998753 69999999999999999999999999999999
Q ss_pred HH-hccCChhhhc----ccCC-CCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy17685 175 FL-SQGGDQDWLK----GLSY-APKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVF 248 (286)
Q Consensus 175 f~-~~gGDp~wl~----gl~~-ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~ 248 (286)
.+ ..|.+++.+. +-.. .++|+|++++|+..||..|..|+++++++|+++|||++||++++.++++|++.|++..
T Consensus 111 a~~~~G~~~e~i~a~r~~~~~~~~~~erA~l~~a~~lt~~~~~v~d~~~~~l~~agfsd~eivel~~~ia~~~~~n~~n~ 190 (207)
T 3lvy_A 111 SIKQIQMAPDLLEALRNATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANN 190 (207)
T ss_dssp HHHTTCCCHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 7777775543 3222 4999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCcCC
Q psy17685 249 ACGVNEELDS 258 (286)
Q Consensus 249 G~Gi~pe~D~ 258 (286)
..|+.++...
T Consensus 191 ~~~~~~d~~~ 200 (207)
T 3lvy_A 191 MADTPINPEL 200 (207)
T ss_dssp HHTCCCCGGG
T ss_pred HhCCCCChHH
Confidence 9999887553
No 6
>2gmy_A Hypothetical protein ATU0492; structural genomics, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: a.152.1.3
Probab=99.86 E-value=4.3e-21 Score=160.97 Aligned_cols=136 Identities=12% Similarity=0.199 Sum_probs=123.5
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhccc------CCCCHH
Q psy17685 121 VMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGL------SYAPKK 194 (286)
Q Consensus 121 vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl------~~ip~K 194 (286)
.++++|+.+++|..+++.+. +|+||..+||.|++.+|..|+|.||+.+|....+..|.+++-+..+ ...++|
T Consensus 7 ~~~~~P~~~~~~~~l~~~~~--~~~L~~~~rELv~l~vs~~ngC~yC~~~H~~~a~~~G~~~~~i~~l~~~~~~~~~~~~ 84 (153)
T 2gmy_A 7 YAKASPEAFKAVMALENYVQ--SSGLEHRFIHLIKLRASIINGCAFCVDMHVKESRHDGLSEQWINLMSVWRESPVYTEQ 84 (153)
T ss_dssp HHHHCHHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHGGGGGGGCTTSCHH
T ss_pred hHhhCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHhcccccCCCCHH
Confidence 47899999999999999984 6899999999999999999999999999999999999998755432 347999
Q ss_pred HHHHHHHHHHHccCCC-CCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCC
Q psy17685 195 LGLLYEVNKILAHRPW-LLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEELDSL 259 (286)
Q Consensus 195 lraL~~~n~~Lah~Pw-~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe~D~~ 259 (286)
+|++++|+..+|..|- .+++++++.|++. ||++||++++.++++||+.||+..++|+.++.+..
T Consensus 85 e~A~l~~a~~lt~~~~~~v~d~~~~~l~~~-~s~~ei~el~~~ia~~n~~nr~~~~~~~~~~~~~~ 149 (153)
T 2gmy_A 85 ERALLGWVDAVTKIAETGAPDDAFETLRAH-FSDEEIVKITVAIGAINTWNRIAVGFRSQHPVEAA 149 (153)
T ss_dssp HHHHHHHHHHHHTHHHHCCCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhh
Confidence 9999999999999984 8999999999975 99999999999999999999999999999876554
No 7
>2o4d_A Hypothetical protein PA0269; unknown function; 1.85A {Pseudomonas aeruginosa} SCOP: a.152.1.3 PDB: 2ijc_A
Probab=99.84 E-value=1.2e-20 Score=161.08 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=121.1
Q ss_pred HHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhccc------CCCCHH
Q psy17685 121 VMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGL------SYAPKK 194 (286)
Q Consensus 121 vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl------~~ip~K 194 (286)
+++.+|+.+++|..++..+. +|.||..+||.|++.+|..|+|.||+.+|....+..|.+++-+..+ ...++|
T Consensus 27 ~~~~~P~~~~~~~~l~~~l~--~~~L~~~~rELi~l~vS~~ngC~yC~~~H~~~a~~~G~s~e~i~~l~~~~~~~~~~~~ 104 (165)
T 2o4d_A 27 WAKASPDAYAAMLGLEKALA--KAGLERPLIELVYLRTSQINGCAYCVNMHANDARKAGETEQRLQALCVWQETPYFTPR 104 (165)
T ss_dssp HHHHCHHHHHHHHHHHHHHH--HSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHGGGGGGCSCSCHH
T ss_pred HHhhCHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHhccccCCCCHH
Confidence 48899999999999999985 6899999999999999999999999999999999999998755322 247999
Q ss_pred HHHHHHHHHHHccCC-CCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy17685 195 LGLLYEVNKILAHRP-WLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEE 255 (286)
Q Consensus 195 lraL~~~n~~Lah~P-w~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe 255 (286)
+|++++|+..+|..| -.++++++++|++ .||++||++++.++++||++||+..++|+.|+
T Consensus 105 erA~l~~a~~lt~~~~~~v~d~~~~~l~~-~fsd~eivel~~~ia~~n~~NRl~~~l~~~~~ 165 (165)
T 2o4d_A 105 ERAALAWTEQLARLSQGALPHGLLDELRE-HFDDKEIAELTLAVSAINAWNRFGVGMGMQPE 165 (165)
T ss_dssp HHHHHHHHHHHHTGGGSCCCTTHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCcCCCCCHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999998 5899999999996 59999999999999999999999999999875
No 8
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone decarboxylase family, structural genomics, joint for structural genomics; 1.95A {Rhodospirillum rubrum} SCOP: a.152.1.4
Probab=99.74 E-value=1.5e-17 Score=136.58 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=100.0
Q ss_pred hhhhhccccccc----cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHH
Q psy17685 101 EKSQLYSDDTFL----QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFL 176 (286)
Q Consensus 101 Ek~q~Lf~eaf~----GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~ 176 (286)
++++.++..... |+|||++++|+++|+.+++|+..+..++..+|.||..+||+|++.+|..|+|.||+.+|....
T Consensus 17 ~~~~~~~~~~~~~~g~g~vpn~~~~la~~P~~~~~~~~~~~~~~~~~~~L~~~~~Eli~l~vs~~n~C~yC~~~H~~~a- 95 (138)
T 2ouw_A 17 PEVKAVFDDIRATRGSDFVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSHTAAA- 95 (138)
T ss_dssp HHHHHHHHHHHHHHSSSCCCHHHHHHTTSHHHHHHHHHHHHHHHSSSSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-
Confidence 566666655432 499999999999999999999999999988899999999999999999999999999999733
Q ss_pred hccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy17685 177 SQGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVNEEL 256 (286)
Q Consensus 177 ~~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~pe~ 256 (286)
++.|.|.+||.+++.++++|+.+|+++.++|+.++.
T Consensus 96 --------------------------------------------~~~G~s~eei~~l~~~~~~~~~~nrl~~~l~~~~d~ 131 (138)
T 2ouw_A 96 --------------------------------------------RAKGMTPAQHAEVLAIIGLAAQTNALVTAMQIPVDE 131 (138)
T ss_dssp --------------------------------------------HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCG
T ss_pred --------------------------------------------HHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 457899999999999999999999999999998876
Q ss_pred CC
Q psy17685 257 DS 258 (286)
Q Consensus 257 D~ 258 (286)
..
T Consensus 132 ~~ 133 (138)
T 2ouw_A 132 AF 133 (138)
T ss_dssp GG
T ss_pred HH
Confidence 53
No 9
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all alpha, structural genomi NPPSFA; 1.90A {Thermus thermophilus} SCOP: a.152.1.4
Probab=99.40 E-value=5.7e-13 Score=110.74 Aligned_cols=106 Identities=16% Similarity=0.090 Sum_probs=89.5
Q ss_pred Chhhhhccccccc--c-chhhHHHHHh-cCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHH
Q psy17685 100 SEKSQLYSDDTFL--Q-KLDHVTQVMG-YHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEF 175 (286)
Q Consensus 100 ~Ek~q~Lf~eaf~--G-rVpNV~~vla-~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f 175 (286)
+++.+.++.++.. | ++||++..++ ..|+.++.+.......+..+|.|++.+||+|++.+|..|+|.||+..|...
T Consensus 22 ~~~~~~~l~~~~~~~G~~vpn~~~~l~~~~P~~l~~~~~~~~~~~~~~g~Ld~k~reLI~lavs~~ngC~~Cl~~H~~~- 100 (137)
T 2cwq_A 22 DRTHERVLQAMAENLGEGLPRAIPLLAEKAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHR- 100 (137)
T ss_dssp SSSSHHHHHHHHHHHGGGCCTHHHHHHHHCHHHHHHHHHHHHHHSCTTCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH-
Confidence 4566667766655 9 9999999988 999999955443333335788999999999999999999999999999866
Q ss_pred HhccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q psy17685 176 LSQGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFAC 250 (286)
Q Consensus 176 ~~~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~ 250 (286)
+++.|.|.+||.+++.+.+.+...+.++.+.
T Consensus 101 --------------------------------------------A~~~G~t~eeI~eal~~a~~~~g~~~~~~~~ 131 (137)
T 2cwq_A 101 --------------------------------------------AKRLGLSKEALLETLKIARQAQANAVLGHAA 131 (137)
T ss_dssp --------------------------------------------HHHHTCCHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred --------------------------------------------HHHcCCCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5668999999999999999999999998764
No 10
>2qeu_A Putative carboxymuconolactone decarboxylase; YP_555818.1, carboxymuconolactone decarboxylase family; HET: CIT GOL; 1.65A {Burkholderia xenovorans}
Probab=99.20 E-value=3.2e-11 Score=100.33 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=82.5
Q ss_pred cchhhHHHHH-hcCcHHHHHHHHHHHHhhc---CCCCCCHHHHHHHHHHhhccCCcc-hHHHHHHHHHHhccCChhhhcc
Q psy17685 113 QKLDHVTQVM-GYHPTYLNIFLRTQNYIMR---GDGPLSYEYRHYIAIMAAGRHQCS-YLINLQKEEFLSQGGDQDWLKG 187 (286)
Q Consensus 113 GrVpNV~~vl-a~~P~yL~~f~~~~~~Lm~---~~g~Lp~~eReyIAImaSa~n~C~-Ycv~~H~a~f~~~gGDp~wl~g 187 (286)
|+|||.+..+ ...|+.+++|..++..++. .+|.|+...||+|++.+| .|+|. ||+..|...
T Consensus 26 G~vP~~~~~l~~~~P~~~~~~~~l~~~~~~~~~~~~~Ld~k~reLI~lavs-~ngC~~~Cl~~H~~~------------- 91 (141)
T 2qeu_A 26 GGLPEALVQLAEYAPETFDAYSRMRTTMLKSEADGAKLPLKYKHLILVVLD-AIRDEPIGIVNHTRA------------- 91 (141)
T ss_dssp SSCCHHHHHHHHHCHHHHHHHHHHHHHHTCCGGGTCSSCHHHHHHHHHHHH-HHHTCHHHHHHHHHH-------------
T ss_pred ccchHHHHHHHHhCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHH-------------
Confidence 9999988655 5999999999999988862 478899999999999999 99999 999999975
Q ss_pred cCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17685 188 LSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACG 251 (286)
Q Consensus 188 l~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~G 251 (286)
+++.|.|..||.+++.+++.+.....+..+..
T Consensus 92 --------------------------------A~~~G~t~eeI~eai~~a~~~~G~p~~~~a~~ 123 (141)
T 2qeu_A 92 --------------------------------AMNAGLSVDELIEGILLGIIVYGMPAWGKTGR 123 (141)
T ss_dssp --------------------------------HHHTTCCHHHHHHHHHHHHHHHCTHHHHTTHH
T ss_pred --------------------------------HHHcCCCHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 36689999999999999999988888777665
No 11
>3bey_A Conserved protein O27018; TT217, NESG, structural genomics, PSI-2, PROT structure initiative; 2.40A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.13 E-value=2.9e-10 Score=87.70 Aligned_cols=65 Identities=15% Similarity=0.203 Sum_probs=54.2
Q ss_pred hhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCC
Q psy17685 116 DHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGD 181 (286)
Q Consensus 116 pNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGD 181 (286)
+|+.++++.+|+.+++|..++..++ .+|+||..+||.|++.+|..|+|.||+..|....+..|-+
T Consensus 3 ~~l~~~~~~~P~~~~~~~~l~~~~~-~~~~L~~~~reLi~l~vs~~ngc~~c~~~H~~~a~~~G~t 67 (96)
T 3bey_A 3 TGADRFLEELPEVAESFKNFREAVR-SEGKLTEREKLLISVACSVAVRCDACTRRHAEEALEAGIT 67 (96)
T ss_dssp ----CTGGGCHHHHHHHHHHHHHHH-TCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHCHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 6788889999999999999999987 5688999999999999999999999999998766644433
No 12
>3d7i_A Carboxymuconolactone decarboxylase family protein; 1591455, structural genomics, JOI for structural genomics, JCSG; HET: MSE PG4; 1.75A {Methanocaldococcus jannaschii}
Probab=99.11 E-value=4.5e-10 Score=88.39 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=79.2
Q ss_pred hhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhcccCCCCHHH
Q psy17685 116 DHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGLSYAPKKL 195 (286)
Q Consensus 116 pNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl~~ip~Kl 195 (286)
+++....+..|+.++.|.+++..++ .++.||..+||+|++.+|..|+|.||+..|...
T Consensus 10 ~~~~~~~~~~P~~~~~~~~l~~~~~-~~~~L~~k~reLi~lavs~~~gc~~cl~~H~~~--------------------- 67 (105)
T 3d7i_A 10 EGMKVVAAAYPDLYDIIVKLNDTVF-TGKTLDYKTQKLIAIGIVASRCDEVAIEKQMKS--------------------- 67 (105)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHT-SCSSSCHHHHHHHHHHHHHTSSCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------
Confidence 5677888999999999999988886 457899999999999999999999999999866
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17685 196 GLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACG 251 (286)
Q Consensus 196 raL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~G 251 (286)
++++.|.|.+||.+++.+++.|....+...+..
T Consensus 68 -----------------------A~~~~G~t~eei~e~~~~~~~~~G~p~~~~a~~ 100 (105)
T 3d7i_A 68 -----------------------AMKELGITKEEIADVLRVVLLTSGMPAFTKAMK 100 (105)
T ss_dssp -----------------------HHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -----------------------HHHHcCCCHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 332689999999999999999988888777654
No 13
>1p8c_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Thermotoga maritima} SCOP: a.152.1.2
Probab=98.90 E-value=7.8e-09 Score=87.12 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=72.8
Q ss_pred hHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhcccCCCCHHHH
Q psy17685 117 HVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGLSYAPKKLG 196 (286)
Q Consensus 117 NV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl~~ip~Klr 196 (286)
.+.++++..|+.+++|..++..++ .++.|+..+||+|++.+|..|+|.||+..|...
T Consensus 35 ~~~~l~~~~P~~~~~~~~l~~~i~-~~~~Ld~k~rELI~Lavs~~ngC~~cl~~H~~~---------------------- 91 (145)
T 1p8c_A 35 LNEKVLSRGTLNTKRFFNLDSAVY-RPGKLDVKTKELMGLVASTVLRCDDCIRYHLVR---------------------- 91 (145)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHTT-SCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------
Confidence 346678899999999999988887 567899999999999999999999999999973
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy17685 197 LLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVF 248 (286)
Q Consensus 197 aL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~ 248 (286)
.++.|.|.+||.+++.+++.|.....+..
T Consensus 92 -----------------------A~~~G~T~eEI~eal~~a~~~~G~pa~~~ 120 (145)
T 1p8c_A 92 -----------------------CVQEGASDEEIFEALDIALVVGGSIVIPH 120 (145)
T ss_dssp -----------------------HHTTSCCHHHHHHHHHHHHHHHCGGGHHH
T ss_pred -----------------------HHHcCCCHHHHHHHHHHHHHHcCcchhhH
Confidence 55688888888888888888876654443
No 14
>1vke_A Carboxymuconolactone decarboxylase family protein; TM1620, structural genomics, JC protein structure initiative, PSI; 1.56A {Thermotoga maritima} SCOP: a.152.1.2
Probab=98.79 E-value=2.2e-08 Score=83.17 Aligned_cols=62 Identities=13% Similarity=0.262 Sum_probs=53.3
Q ss_pred HHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh
Q psy17685 120 QVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ 182 (286)
Q Consensus 120 ~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp 182 (286)
++++..|+.+++|..++..++ .+|.||..+||+|++.+|..|+|.||+..|...-+..|-.+
T Consensus 28 ~l~~~~P~~~~a~~~l~~~i~-~~~~Ld~k~rELI~Lavs~~ngC~yCl~~H~~~A~~~G~t~ 89 (133)
T 1vke_A 28 KVLSRGTLNTKRFFNLDSAVY-RPGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGASD 89 (133)
T ss_dssp HC-CCSCHHHHHHHHHHHHTT-SCSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhCHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCH
Confidence 558899999999999998887 56889999999999999999999999999996666555444
No 15
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=98.79 E-value=3.3e-08 Score=89.08 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=109.4
Q ss_pred hhhhccccccc--cchhhHHHHHh-cCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhh--ccCCcchHHHHHHHHHH
Q psy17685 102 KSQLYSDDTFL--QKLDHVTQVMG-YHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAA--GRHQCSYLINLQKEEFL 176 (286)
Q Consensus 102 k~q~Lf~eaf~--GrVpNV~~vla-~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaS--a~n~C~Ycv~~H~a~f~ 176 (286)
+.+.++.+... |++||.+..+. ..|+.++.|...+..++. ++.|+..+||+|++.+| ..|+|.||+..|...-+
T Consensus 10 ~~~~~~~~~~~~~G~~~~~~~~~~~~~P~~~~~~~~~~~~~~~-~~~L~~~~reLi~la~~~a~~n~c~~cl~~H~~~a~ 88 (263)
T 2q0t_A 10 DPSRLRDELVRLHGKASPEWDSLVRLDPRFVDAYLKFAGVPQR-RNHLDDKTRAFIALAADACATQLYAPGVARHIERAL 88 (263)
T ss_dssp CHHHHHHHHHHHHSSCCHHHHHHHHHCHHHHHHHHHHHHHHHH-HCSSCHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcchhHHHHHHHHhCHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 44555555444 99888777766 999999999999888774 56799999999999999 56699999999997766
Q ss_pred hccCCh-----------------------------------------------------------------------hhh
Q psy17685 177 SQGGDQ-----------------------------------------------------------------------DWL 185 (286)
Q Consensus 177 ~~gGDp-----------------------------------------------------------------------~wl 185 (286)
..|-.+ +..
T Consensus 89 ~~G~t~~ei~e~~~~a~~~g~~~~~~al~~~~~v~~~~~~~~~~~~~d~r~e~~~~~~~e~~G~~~~~~~~~~~~~P~~~ 168 (263)
T 2q0t_A 89 SFGATREELIEVLELVSTIGIHTSNVGVPVLLEVLEEEGLRKGAPPLDERRQKLKAEFETNRGYWHPTWEGLLELDPDLF 168 (263)
T ss_dssp HTTCCHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHTTSCCSCCCCCHHHHHHHHHHHHHHSCCCHHHHHHHHHCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHHhCCccHHHHHHHHHCHHHH
Confidence 544221 000
Q ss_pred c-------c---cCCCCHHHHHHHHHHHHHcc--CCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcC
Q psy17685 186 K-------G---LSYAPKKLGLLYEVNKILAH--RPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACG 251 (286)
Q Consensus 186 ~-------g---l~~ip~KlraL~~~n~~Lah--~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~G 251 (286)
+ + -..+|+|.|.|..++...+. .-..--+.|++..++.|.|.+||.+++.+..+... .+...|..
T Consensus 169 ~~~~~~~~~~~~~~~L~~k~reLi~la~~~a~~~gc~~cl~~H~~~a~~~G~t~eei~e~~~~a~~~G~-~~a~~a~~ 245 (263)
T 2q0t_A 169 EAYVEFSSVPWRTGVLSPKIKEFMYCAFDASATHLYVPGLKLHIRNALRYGATAEELMELLEIVSVTGI-HGAELGAP 245 (263)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGGG-HHHHHHHH
T ss_pred HHHHHHHhccccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-cHHHHHHH
Confidence 0 0 13588999999999988775 55555678899999999999999999966655433 33444443
No 16
>2q0t_A Putative gamma-carboxymuconolactone decarboxylase; AHPD-like fold, structural genomics, joint center for struct genomics, JCSG; 1.70A {Burkholderia xenovorans} SCOP: a.152.1.1
Probab=98.38 E-value=5.7e-07 Score=80.93 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=77.9
Q ss_pred cchhhHHHHHh-cCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHh--hccCCcchHHHHHHHHHHhccCChhhhcc--
Q psy17685 113 QKLDHVTQVMG-YHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMA--AGRHQCSYLINLQKEEFLSQGGDQDWLKG-- 187 (286)
Q Consensus 113 GrVpNV~~vla-~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAIma--Sa~n~C~Ycv~~H~a~f~~~gGDp~wl~g-- 187 (286)
|.+||+++.+. ..|+.++.|.++...++ .++.|+..+||+|++.+ |..|+|.||+..|...-+..|-.++-+..
T Consensus 151 G~~~~~~~~~~~~~P~~~~~~~~~~~~~~-~~~~L~~k~reLi~la~~~a~~~gc~~cl~~H~~~a~~~G~t~eei~e~~ 229 (263)
T 2q0t_A 151 GYWHPTWEGLLELDPDLFEAYVEFSSVPW-RTGVLSPKIKEFMYCAFDASATHLYVPGLKLHIRNALRYGATAEELMELL 229 (263)
T ss_dssp SCCCHHHHHHHHHCHHHHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCccHHHHHHHHHCHHHHHHHHHHHhccc-cCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999886 89999999999887766 67889999999999999 66789999999999999999988866532
Q ss_pred ----cCCCCHHHHHHHHHHHHHccC
Q psy17685 188 ----LSYAPKKLGLLYEVNKILAHR 208 (286)
Q Consensus 188 ----l~~ip~KlraL~~~n~~Lah~ 208 (286)
....|.-..++.-+.+.+..+
T Consensus 230 ~~a~~~G~~~a~~a~~~~~~v~~~~ 254 (263)
T 2q0t_A 230 EIVSVTGIHGAELGAPLLEAALKRS 254 (263)
T ss_dssp HHHGGGGGHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCccHHHHHHHHHHHHHHhc
Confidence 234566666666666666554
No 17
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=97.97 E-value=7.4e-06 Score=66.30 Aligned_cols=83 Identities=11% Similarity=0.024 Sum_probs=63.9
Q ss_pred HhcCcHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhhccc-----C-CCCHH
Q psy17685 122 MGYHPTYLNIFLRT-QNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGL-----S-YAPKK 194 (286)
Q Consensus 122 la~~P~yL~~f~~~-~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl~gl-----~-~ip~K 194 (286)
-...|+.++.|... +..++. .+.|+..+||+|++.+|..++|.||+..|...-+..|-.++-+..+ . .-.||
T Consensus 27 ~~~~P~~~~~~~~~~~~~~~~-~~~L~~k~reLi~la~~~~~gc~~cl~~H~~~a~~~G~t~~ei~e~~~~~~~~~G~p~ 105 (125)
T 2af7_A 27 EDVAPDLARFVAEFAYGDVYS-RGVLDLKTRELLTLAALTVLRADDQLKSHVRGALNAGCSKDEIIEVMIQMAVYAGFPA 105 (125)
T ss_dssp HHHCHHHHHHHHHTCCCCCCT-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCHHHHHHHHHHhcccccc-CCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCHHH
Confidence 34689999988886 677664 4569999999999999999999999999999999999888666421 1 12356
Q ss_pred HHHHHHHHHHH
Q psy17685 195 LGLLYEVNKIL 205 (286)
Q Consensus 195 lraL~~~n~~L 205 (286)
..+...+++.+
T Consensus 106 ~~~a~~~~~~v 116 (125)
T 2af7_A 106 AINAVLAAKEV 116 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 65665555444
No 18
>1gu9_A Alkylhydroperoxidase D; oxidoreductase; 1.9A {Mycobacterium tuberculosis} SCOP: a.152.1.1 PDB: 1knc_A 1me5_A 1lw1_A
Probab=97.87 E-value=8.7e-06 Score=71.09 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCChhhh
Q psy17685 142 GDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWL 185 (286)
Q Consensus 142 ~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp~wl 185 (286)
.+|+||+..||+|++.+|..|+|.||+.+|....+..|.+++-+
T Consensus 108 ~~~~Ld~~~kELI~LaVSqiNgC~yCv~~Ht~~a~~~G~s~e~I 151 (177)
T 1gu9_A 108 ANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAI 151 (177)
T ss_dssp HCCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHH
Confidence 46899999999999999999999999999999999988776444
No 19
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A {Pseudomonas putida}
Probab=97.76 E-value=6.1e-07 Score=84.53 Aligned_cols=76 Identities=12% Similarity=-0.011 Sum_probs=68.6
Q ss_pred CCChhhhhccccccc----cchhhHHHHHhcCcHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHH
Q psy17685 98 HHSEKSQLYSDDTFL----QKLDHVTQVMGYHPTYLNIFLR-TQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQK 172 (286)
Q Consensus 98 ~~~Ek~q~Lf~eaf~----GrVpNV~~vla~~P~yL~~f~~-~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~ 172 (286)
..|+++++++.++.. ..|+|..|+|+.+|+||+.-++ .-..+| .+|.|...-||+|+++++..|+|.||+..|.
T Consensus 180 eas~~v~aV~~DIr~t~~~~~vns~~RaLA~wP~~L~~~W~~~LKpv~-~~g~ld~l~~eii~~Avs~~~g~~y~~~~~~ 258 (311)
T 3bjx_A 180 KASTEVQGLLKRVADLHYHHGPASDFQALANWPKVLQIVTDEVLAPVA-RTEQYDAKSRELVTRARELVRGLPGSAGVQR 258 (311)
T ss_dssp GSCHHHHHHHHHHHHHTTCSSCCHHHHHHTTSHHHHHHHHHTTTTTTT-TSHHHHHHHHHHHHHHHHHHHTCSSBCSCCG
T ss_pred hcCHHHHHHHHHHHHHhCCCCcccHHHHHhcChHHHHHHHHHHHHHHh-cchhhhHHHHHHHHHHHHHHhCCCCccccCH
Confidence 678899999999854 8899999999999999999994 778888 7789999999999999999999999999887
Q ss_pred HH
Q psy17685 173 EE 174 (286)
Q Consensus 173 a~ 174 (286)
++
T Consensus 259 aa 260 (311)
T 3bjx_A 259 SE 260 (311)
T ss_dssp GG
T ss_pred HH
Confidence 55
No 20
>1gu9_A Alkylhydroperoxidase D; oxidoreductase; 1.9A {Mycobacterium tuberculosis} SCOP: a.152.1.1 PDB: 1knc_A 1me5_A 1lw1_A
Probab=97.64 E-value=0.00044 Score=60.26 Aligned_cols=126 Identities=15% Similarity=0.018 Sum_probs=101.3
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh-------------------
Q psy17685 122 MGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ------------------- 182 (286)
Q Consensus 122 la~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp------------------- 182 (286)
-..-|+|.+-+.--...+++ ++.|+..++..|++.+|...+|.+|+..|.++... +.++
T Consensus 7 k~~~p~~akd~~lnl~~~~~-~~~Ls~~~~~g~~lA~A~a~~~~~~~~~~~~~a~~-~ls~e~~~~a~~aas~MamnNv~ 84 (177)
T 1gu9_A 7 KAALPEYAKDIKLNLSSITR-SSVLDQEQLWGTLLASAAATRNPQVLADIGAEATD-HLSAAARHAALGAAAIMGMNNVF 84 (177)
T ss_dssp HHHCCGGGHHHHHHHHHHHT-CSSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHhhhc-cCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHhhhhh
Confidence 34579999988877777775 78999999999999999999999999999977764 3222
Q ss_pred ---------hhh---ccc-------CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHH
Q psy17685 183 ---------DWL---KGL-------SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSL 243 (286)
Q Consensus 183 ---------~wl---~gl-------~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl 243 (286)
++- .++ ..+|+|++.|..+..=...+=.-.-..|...+++.|.|.++|.+++-|.+..+..
T Consensus 85 yr~~~m~~~~y~~~p~~lr~~~l~~~~Ld~~~kELI~LaVSqiNgC~yCv~~Ht~~a~~~G~s~e~I~eal~vA~~~~g~ 164 (177)
T 1gu9_A 85 YRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFAVSAINGCSHCLVAHEHTLRTVGVDREAIFEALKAAAIVSGV 164 (177)
T ss_dssp HHHHHHTTTTTTTSCCCCCCHHHHCCSSCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhchhhHHHhHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhH
Confidence 220 011 2488999888888777666666666778888999999999999999999999998
Q ss_pred HHHHHh
Q psy17685 244 ASFVFA 249 (286)
Q Consensus 244 ~~fv~G 249 (286)
...+.+
T Consensus 165 ~~~~~~ 170 (177)
T 1gu9_A 165 AQALAT 170 (177)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888776
No 21
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.77A {Sinorhizobium meliloti}
Probab=97.06 E-value=0.012 Score=54.07 Aligned_cols=111 Identities=13% Similarity=0.068 Sum_probs=84.8
Q ss_pred HHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh---------------------------------
Q psy17685 136 QNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ--------------------------------- 182 (286)
Q Consensus 136 ~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp--------------------------------- 182 (286)
|..+... +.|+..+|++|.|.+.+..+|..|+..|-..-+..|-.+
T Consensus 62 fG~vw~r-~~Ld~k~R~Litla~l~A~g~~~~l~~H~~~Al~~G~T~~EI~Evl~q~~~Y~G~P~a~~a~~~~~ev~~er 140 (269)
T 4g9q_A 62 YGDVWQR-PGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYYSGWGKAMATVGPVSEAFAKR 140 (269)
T ss_dssp TTTGGGC-TTSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCHHHHHTTHHHHHHHHHHT
T ss_pred hhcccCC-CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc
Confidence 3344444 569999999999999999999999999997776665331
Q ss_pred -----------------------------------------hhhc--------ccCCCCHHHHHHHHHHHHHccCCCCCC
Q psy17685 183 -----------------------------------------DWLK--------GLSYAPKKLGLLYEVNKILAHRPWLLN 213 (286)
Q Consensus 183 -----------------------------------------~wl~--------gl~~ip~KlraL~~~n~~Lah~Pw~I~ 213 (286)
+|+. .-..+++|.|.|..++.+.+..-..--
T Consensus 141 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~aP~~~~~~~~~~fGdi~~r~~L~~k~ReLitia~l~a~g~~~ql 220 (269)
T 4g9q_A 141 GIGQDQLAAVESTPLPLDEEAEAQRATTVGNQFGSVAPGLVQYTTDYLFRDLWLRPDLAPRDRSLVTIAALISVGQVEQI 220 (269)
T ss_dssp TCCGGGSCCSSCCCCCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTTTGGGCTTSCHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCCccccCcccccchhHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhhhhHHhccCccHhHHHHHHHHHHHHCCChHHH
Confidence 0000 014589999999999999997655445
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHH
Q psy17685 214 PSHLQKLTKNGWSLGELCHALVLLVNFHSLASFV 247 (286)
Q Consensus 214 ~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv 247 (286)
+-|+...++.|-|.+||.+++..++.|--..+..
T Consensus 221 ~~Hi~~Al~~G~T~eEi~Evi~~~a~y~G~P~a~ 254 (269)
T 4g9q_A 221 TFHLNKALDNGLSEEQAAEVITHLAFYAGWPNAM 254 (269)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6888888889999999999999999985443333
No 22
>3bjx_A Halocarboxylic acid dehalogenase DEHI; plasmid, hydrolase; 2.30A {Pseudomonas putida}
Probab=96.76 E-value=0.0011 Score=62.50 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=73.9
Q ss_pred hhccCCChhhhhccccccc----cchhhHHHHHhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHH
Q psy17685 94 LKEFHHSEKSQLYSDDTFL----QKLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLIN 169 (286)
Q Consensus 94 L~~~~~~Ek~q~Lf~eaf~----GrVpNV~~vla~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~ 169 (286)
+.+-..|..++.+|.|+.. ..|+|++|+++.+|.+|+..|+..+-+| ..+.+-..-++ |-+. |..|. ||+
T Consensus 25 v~e~eAs~ev~~VydDIr~T~~vp~Vn~~wRalA~~P~fL~~aW~~lKp~m-~t~~~e~~a~e-lr~a-s~~~~--~~i- 98 (311)
T 3bjx_A 25 LSQLDVSGEMESTYEDIRLTLRVPWVAFGCRVLATFPGYLPLAWRRSAEAL-ITRYAEQAADE-LRER-SLLNI--GPL- 98 (311)
T ss_dssp CCTTTCCHHHHHHHHHHHHHHTCSSCCHHHHHHTTSTTHHHHHHHHHTTGG-GBHHHHHHHHH-HHHH-TCCCC--CSC-
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCchhHHHHHHhcCchHHHHHHHHHHHHh-cchhHHHHHHH-HHHH-hcccC--CCC-
Confidence 3345677888899999865 8999999999999999999999989888 33333222222 2222 33333 444
Q ss_pred HHHHHHHhccCChhhhcccCCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHH
Q psy17685 170 LQKEEFLSQGGDQDWLKGLSYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASF 246 (286)
Q Consensus 170 ~H~a~f~~~gGDp~wl~gl~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~f 246 (286)
..+-.+|++.|||.+|+-++..++..|+..|.-
T Consensus 99 --------------------------------------------~~~t~alra~G~t~ae~~el~avv~~fn~~Np~ 131 (311)
T 3bjx_A 99 --------------------------------------------PNLKERLYAAGFDDGEIEKVRRVLYAFNYGNPK 131 (311)
T ss_dssp --------------------------------------------CCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------CCchHHHHHcCCCHHHHHHHHHHHHHHHhhhHH
Confidence 334456677899999999999999998888764
No 23
>4g9q_A 4-carboxymuconolactone decarboxylase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.77A {Sinorhizobium meliloti}
Probab=91.06 E-value=0.78 Score=42.07 Aligned_cols=64 Identities=11% Similarity=0.082 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy17685 189 SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGV 252 (286)
Q Consensus 189 ~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi 252 (286)
..++.|.|.|..++...|..-+.-=+.|+...++.|.|..||.+++..++.|--..+...++++
T Consensus 69 ~~Ld~k~R~Litla~l~A~g~~~~l~~H~~~Al~~G~T~~EI~Evl~q~~~Y~G~P~a~~a~~~ 132 (269)
T 4g9q_A 69 PGLNRRDRSLVTIAALIARGEAPALTYYADQALENGVKPSEISETITHLAYYSGWGKAMATVGP 132 (269)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCHHHHHTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5699999999999999998766555688888888999999999999998888655555555433
No 24
>2af7_A Gamma-carboxymuconolactone decarboxylase; O26336_metth, NESG, TT747, structural genomics, PSI, protein structure initiative; 2.81A {Methanothermobacterthermautotrophicus} SCOP: a.152.1.2
Probab=87.77 E-value=1.3 Score=35.11 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHccCCCCCCHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17685 189 SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLGELCHALVLLVNFHSLASFVFACGVN 253 (286)
Q Consensus 189 ~~ip~KlraL~~~n~~Lah~Pw~I~~~di~~L~~~gWS~~ELv~Av~Ila~fhsl~~fv~G~Gi~ 253 (286)
..+|+|.|.|..++...+..-..--..|+...++.|.|..||.+++.+++.+....+...+..+-
T Consensus 49 ~~L~~k~reLi~la~~~~~gc~~cl~~H~~~a~~~G~t~~ei~e~~~~~~~~~G~p~~~~a~~~~ 113 (125)
T 2af7_A 49 GVLDLKTRELLTLAALTVLRADDQLKSHVRGALNAGCSKDEIIEVMIQMAVYAGFPAAINAVLAA 113 (125)
T ss_dssp CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 35999999999999999986554556899999999999999999999988876666666555443
No 25
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=68.46 E-value=5.7 Score=28.11 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHCCCChHHHHHHHHHH
Q psy17685 209 PWLLNPSHLQKLTKNGWSLGELCHALVLL 237 (286)
Q Consensus 209 Pw~I~~~di~~L~~~gWS~~ELv~Av~Il 237 (286)
|..=.++.|+.|+.-|+|..++++|+.+.
T Consensus 7 ~~~~~~~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 7 ALENVDAKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp ----CHHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCChHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34445589999999999999999998763
No 26
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=67.14 E-value=5.4 Score=27.54 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.8
Q ss_pred HHHHHHHHHCCCChHHHHHHHHHH
Q psy17685 214 PSHLQKLTKNGWSLGELCHALVLL 237 (286)
Q Consensus 214 ~~di~~L~~~gWS~~ELv~Av~Il 237 (286)
+++|+.|+..|+|..++.+|++|.
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 578999999999999999999874
No 27
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=63.78 E-value=6.6 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHCCCChHHHHHHHHHH
Q psy17685 211 LLNPSHLQKLTKNGWSLGELCHALVLL 237 (286)
Q Consensus 211 ~I~~~di~~L~~~gWS~~ELv~Av~Il 237 (286)
.-.+++|+.|+..|||..++.+|+.|.
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345689999999999999999999864
No 28
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.12 E-value=8.5 Score=27.28 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHCCCChHHHHHHHHHH
Q psy17685 208 RPWLLNPSHLQKLTKNGWSLGELCHALVLL 237 (286)
Q Consensus 208 ~Pw~I~~~di~~L~~~gWS~~ELv~Av~Il 237 (286)
.|..-.++.|+.|+..|||..++++|+.+.
T Consensus 4 ~~~~~~e~~I~~L~~lGF~r~~ai~AL~~a 33 (53)
T 2d9s_A 4 GSSGQLSSEIERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SCCSCSHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCccchHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 355666788999999999999999998763
No 29
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=36.07 E-value=42 Score=25.95 Aligned_cols=42 Identities=5% Similarity=-0.027 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHccC------CCCCCHHHHHHHHHCCCChHHHHHH
Q psy17685 192 PKKLGLLYEVNKILAHR------PWLLNPSHLQKLTKNGWSLGELCHA 233 (286)
Q Consensus 192 p~KlraL~~~n~~Lah~------Pw~I~~~di~~L~~~gWS~~ELv~A 233 (286)
++-+.+|..|..-+.-. .-.+++++++.+|+..|+..|+...
T Consensus 77 d~ei~~l~~Yl~~~~~~~~~~~~~~~~t~~~v~~~r~~~~~~~~~~~~ 124 (131)
T 1c52_A 77 DEEIAAVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAE 124 (131)
T ss_dssp HHHHHHHHHHHHHTTSTGGGSTTCCCCCHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHhccCCHHHHHHH
Confidence 35667777877777644 3678999999999999999988764
No 30
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=25.51 E-value=53 Score=27.36 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHCCCChH-------HHHHHHHHHHHH------HHHHHHHHhcCCC-CCcCCC-----CCCCcCC
Q psy17685 211 LLNPSHLQKLTKNGWSLG-------ELCHALVLLVNF------HSLASFVFACGVN-EELDSL-----TDSKNKL 266 (286)
Q Consensus 211 ~I~~~di~~L~~~gWS~~-------ELv~Av~Ila~f------hsl~~fv~G~Gi~-pe~D~~-----~g~~~~p 266 (286)
.+|.+.++..|+..|+-+ |||+|+--.+.. ..--.++-+.||. |..|.. .|..|+.
T Consensus 32 ~~Tr~qL~~~R~EFWDT~p~~~Gr~EIW~ALraA~~~~e~~Dl~tAQ~IldaAgItvp~gdL~~cYDe~G~~Y~L 106 (137)
T 2ksn_A 32 PMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAHAFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQL 106 (137)
T ss_dssp CCSHHHHHHHHHHHHTTSSTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCBCSSCCSSEEEETTTEEEEC
T ss_pred CCCHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCcccCCcHHHHHhccCCccCC
Confidence 489999999999777766 999999666632 3344677788876 667764 5666664
No 31
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=24.42 E-value=2.6e+02 Score=21.97 Aligned_cols=109 Identities=9% Similarity=0.035 Sum_probs=68.8
Q ss_pred HhcCcHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCcchHHHHHHHHHHhccCCh---hhhcccCCC-CHHHHH
Q psy17685 122 MGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQ---DWLKGLSYA-PKKLGL 197 (286)
Q Consensus 122 la~~P~yL~~f~~~~~~Lm~~~g~Lp~~eReyIAImaSa~n~C~Ycv~~H~a~f~~~gGDp---~wl~gl~~i-p~Klra 197 (286)
|.+.-..+.++....-.+...||..+..|+..+.-.... -+-+ ......+.....++ +-...+..+ ++..+.
T Consensus 11 ~~~~~~~l~a~~aLl~~VA~ADG~v~~~E~~~l~~~l~~-lgl~---~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~r~~ 86 (133)
T 2h5n_A 11 MTFSGQELTAIIKMAKSMVMADGKIKPAEIAVMTREFMR-FGIL---QDQVDLLLKASDSIEASQAVALIARMDEERKKY 86 (133)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHGG-GTCC---HHHHHHHHHHHTTSCHHHHHHHHHTSCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCcC---HHHHHHHHHHHHhccHHHHHHHHHcCCHHHHHH
Confidence 444444555588888888999999999999988877665 2211 12222222222111 111112223 445567
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHH----CCCChHHHHHHH
Q psy17685 198 LYEVNKILAHRPWLLNPSHLQKLTK----NGWSLGELCHAL 234 (286)
Q Consensus 198 L~~~n~~Lah~Pw~I~~~di~~L~~----~gWS~~ELv~Av 234 (286)
+.++-..+|..=..+++.+.+-|++ -|+|.++..++.
T Consensus 87 ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~~~~~ 127 (133)
T 2h5n_A 87 VASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTVMEAI 127 (133)
T ss_dssp HHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCHHHHH
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8888888888888888888888777 677777776654
Done!