RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17685
         (286 letters)



>gnl|CDD|218186 pfam04636, PA26, PA26 p53-induced protein (sestrin).  PA26 is a
           p53-inducible protein. Its function is unknown. It has
           similarity to pfam04636 in its N-terminus.
          Length = 450

 Score =  243 bits (623), Expect = 3e-78
 Identities = 97/198 (48%), Positives = 123/198 (62%), Gaps = 7/198 (3%)

Query: 81  YPERMTSEEYNNVLKEFHHSEKSQLYSDDTFLQ--KLDHVTQVMGYHPTYLNIFLRTQNY 138
            P     E+   +L      E++     D FL   ++D++T+VMG HP YL  FLRTQ+Y
Sbjct: 3   GPSAFIPEKE--ILSVDTDDERTHTLFTDVFLFLGRVDNLTRVMGLHPQYLEHFLRTQHY 60

Query: 139 IMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWLKGLSYAPKKLGLL 198
           ++R DGPL   YRHYIAIMAA RHQCSYL+NL + EFL  GGD  WL GL +AP KL  L
Sbjct: 61  LLRMDGPLPLHYRHYIAIMAAARHQCSYLVNLHEREFLQVGGDPRWLNGLDHAPPKLRKL 120

Query: 199 YEVNKILAHRPWLLNPSHLQKLTKNG---WSLGELCHALVLLVNFHSLASFVFACGVNEE 255
            E+NK+LAHRPWL+   H++ L K G   WSL EL HA+VLL +FH+L+SFVF CG+  E
Sbjct: 121 LELNKLLAHRPWLITKEHIEVLVKTGEASWSLAELVHAVVLLAHFHALSSFVFGCGIEPE 180

Query: 256 LDSLTDSKNKLSDKKTSS 273
           +D             T  
Sbjct: 181 VDLEESHTLSPPSVLTQC 198



 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 34/52 (65%), Positives = 42/52 (80%)

Query: 51  AGIRHDDYDYGEVNQLLERSLKSFIKTTACYPERMTSEEYNNVLKEFHHSEK 102
            GIR+DDYDYGEVNQLL+RSLK +IKT ACYPE+ T   Y++  ++F HSEK
Sbjct: 371 YGIRYDDYDYGEVNQLLDRSLKVYIKTAACYPEKTTKRMYDSFWRQFKHSEK 422


>gnl|CDD|213836 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family,
           HK022 subfamily.  Members of this family are phage (or
           prophage-region) homologs of the bacterial homohexameric
           replicative helicase DnaB. Some phage may rely on host
           DnaB, while others encode their own verions. This model
           describes the largest phage-specific clade among the
           close homologs of DnaB, but there are, or course, other
           DnaB homologs from phage that fall outside the scope of
           this model [Mobile and extrachromosomal element
           functions, Prophage functions].
          Length = 420

 Score = 30.8 bits (70), Expect = 0.80
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 65  QLLERSLKSF--IKTTACYPERMTSEEYNNVLKEFHHSEKSQLYSDDT 110
           QL ER L S   I T      R    E+N +L       +  LY DDT
Sbjct: 236 QLGERLLASKSGINTGNIRTGRFNDSEFNRLLNAVDRLSEKDLYIDDT 283


>gnl|CDD|227034 COG4690, PepD, Dipeptidase [Amino acid transport and metabolism].
          Length = 464

 Score = 29.7 bits (67), Expect = 1.6
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 52  GIRHDDYDYGEVNQLLERSLKSFIKTTACYPERMTSEEYNNVLKEFHHSEKSQLYSDDTF 111
            I H  Y++ + + +    LK F K    +        +N     F H   S    D  +
Sbjct: 187 RIDH--YEFNDEDYICSEDLKDFAKKQGLWDPF--DGHFN-----FRHIFGSSNIPDTGY 237


>gnl|CDD|202318 pfam02627, CMD, Carboxymuconolactone decarboxylase family.
           Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is
           involved in protocatechuate catabolism. In some bacteria
           a gene fusion event leads to expression of CMD with a
           hydrolase involved in the same pathway. In these
           bifunctional proteins CMD represents the C-terminal
           domain, pfam00561 represents the N-terminal domain.
          Length = 84

 Score = 27.3 bits (61), Expect = 2.6
 Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 126 PTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQDWL 185
           P         +  ++  DG L  + R  IA+  +  + C Y ++      L  G  ++ +
Sbjct: 1   PELAAALTALRFGVLW-DGGLDPKTRELIALAVSAANGCEYCLDAHTRAALKAGVTEEEI 59

Query: 186 K 186
            
Sbjct: 60  A 60


>gnl|CDD|213885 TIGR04029, CMD_Avi_7170, CMD domain protein, Avi_7170 family.
           Sequences in this family occur as the N-terminal domain
           of a fusion protein with a C-terminal peroxidase-like
           protein, or as discrete protein encoded next to a
           peroxidase-like protein. The two partners regularly are
           encoded near to, and in the same genomes as, a putative
           FMN-dependent luciferase-like monooxygenase (LLM)
           (TIGR04027), and an ABC transporter in which TIGR04028
           models the substrate-binding protein. CDD identifies
           this family as falling within the CMD superfamily that
           includes carboxymuconolactone decarboxylase.
          Length = 174

 Score = 27.9 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 204 ILAHRPWLLNPSHLQKLTKNGWSLGELC--HALVLLVNFHS 242
           +L   P    P  L  LT  GWS  ++     LV  ++F S
Sbjct: 125 LLVFHPRDAAPQALGALTAAGWSADDIVTLSQLVAFLSFQS 165


>gnl|CDD|238329 cd00586, 4HBT, 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes
           the final step in the 4-chlorobenzoate degradation
           pathway in which 4-chlorobenzoate is converted to
           4-hydroxybenzoate in certain soil-dwelling bacteria.
           4HBT forms a homotetramer with four active sites.  There
           is no evidence to suggest that 4HBT is related to the
           type I thioesterases functioning in primary or secondary
           metabolic pathways. Each subunit of the 4HBT tetramer
           adopts a so-called hot-dog fold similar to those of
           beta-hydroxydecanoyl-ACP dehydratase, (R)-specific
           enoyl-CoA hydratase, and type II, thioesterase (TEII).
          Length = 110

 Score = 26.8 bits (60), Expect = 5.4
 Identities = 8/44 (18%), Positives = 13/44 (29%)

Query: 124 YHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYL 167
            +  YL  F   +   +R  G    E       +     +  YL
Sbjct: 19  NNARYLRYFEEAREEFLRELGLGYDELEEQGLGLVVVELEIDYL 62


>gnl|CDD|237394 PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional.
          Length = 314

 Score = 28.1 bits (63), Expect = 5.7
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 4/26 (15%)

Query: 42  PNLNRDLLFAG-IRHDDYDYGEVNQL 66
           P+LN+DLL+AG I H   D G+V +L
Sbjct: 179 PSLNKDLLYAGIILH---DLGKVIEL 201


>gnl|CDD|188219 TIGR02428, pcaJ_scoB_fam, 3-oxoacid CoA-transferase, B subunit.
           Various members of this family are characterized as the
           B subunits of succinyl-CoA:3-ketoacid-CoA transferase
           (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase
           (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase
           (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase
           (EC 2.8.3.9). This represents a very distinct clade with
           strong sequence conservation within the larger family
           defined by pfam01144. The A subunit represents a
           different clade in pfam01144.
          Length = 207

 Score = 27.6 bits (62), Expect = 5.8
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 119 TQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYL 167
           T V  Y P  + +FL+++N I+ G GP          ++ AG+   + L
Sbjct: 28  TLVANYLPEGIEVFLQSENGIL-GMGPAPEPGEEDPDLINAGKQPVTLL 75


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,601,910
Number of extensions: 1398121
Number of successful extensions: 1099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1098
Number of HSP's successfully gapped: 22
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)