RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17685
         (286 letters)



>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446
           {Deinococcus geothermalis [TaxId: 68909]}
          Length = 186

 Score = 48.7 bits (115), Expect = 1e-07
 Identities = 20/144 (13%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 115 LDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEE 174
           + +V +    +      +    N ++  +G L+   R  +A++ +G ++C Y        
Sbjct: 32  VPNVFRAQAVNGEQFLAWWNYFNLLLNKEGYLTNAERELVAVVVSGVNRCLYCAVSHGAA 91

Query: 175 FLSQGGDQDWLKGL------SYAPKKLGLLYEVNKILAHRPWLLNPSHLQKLTKNGWSLG 228
                GD      +      +   ++   L    + L   P  +  + L+ L   G    
Sbjct: 92  LREFLGDPQKADAVAVNWRHADLTEREQALAAYAEKLTRHPAEVTAADLEPLRAVGLDDH 151

Query: 229 ELCHALVLLVNFHSLASFVFACGV 252
           ++   + ++  F+       A G 
Sbjct: 152 QIMELVQVIGMFNLTNRVSSALGF 175


>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301
           {Rhodospirillum rubrum [TaxId: 1085]}
          Length = 134

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 12/72 (16%), Positives = 26/72 (36%)

Query: 114 KLDHVTQVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKE 173
            ++++ + +   P  L         +M G+G L    R  I +  +  + CSY  +    
Sbjct: 33  FVNNIWRGLANDPALLKRTWEQVKTVMVGEGALDPLTREMIYLAVSTANSCSYCAHSHTA 92

Query: 174 EFLSQGGDQDWL 185
              ++G      
Sbjct: 93  AARAKGMTPAQH 104


>d1vkea_ a.152.1.2 (A:) Hypothetical protein TM1620 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 118

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 121 VMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGG 180
           V+         F    + + R  G L  + +  + ++A+   +C   I       + +G 
Sbjct: 14  VLSRGTLNTKRFFNLDSAVYR-PGKLDVKTKELMGLVASTVLRCDDCIRYHLVRCVQEGA 72

Query: 181 DQD 183
             +
Sbjct: 73  SDE 75


>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus
           thermophilus [TaxId: 274]}
          Length = 117

 Score = 31.0 bits (70), Expect = 0.046
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 124 YHPTYLNIFLRTQNYIMRGDGPLSYEYRHYIAIMAAGRHQCSYLINLQKEEFLSQGGDQD 183
             P  L    R+  Y M   G L  + R  I +  A        +          G  ++
Sbjct: 30  KAPGLLLEHGRSWTYAMPEKGALDEKTRTLILLGIALATGSEACVKAMAHRAKRLGLSKE 89


>d2q0ta1 a.152.1.1 (A:1-257) Hypothetical protein Bxeno_B2006
           {Burkholderia xenovorans [TaxId: 36873]}
          Length = 257

 Score = 31.2 bits (70), Expect = 0.12
 Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 99  HSEKSQLYSDDTFLQKLDHVT----QVMGYHPTYLNIFLRTQNYIMRGDGPLSYEYRHYI 154
             + S+L   D  ++     +     ++   P +++ +L+      R    L  + R +I
Sbjct: 7   QPDPSRLR--DELVRLHGKASPEWDSLVRLDPRFVDAYLKFAGVPQR-RNHLDDKTRAFI 63

Query: 155 AIMAAGRHQCSYLINL 170
           A+ A       Y   +
Sbjct: 64  ALAADACATQLYAPGV 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,066,274
Number of extensions: 48891
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 7
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.2 bits)