BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17688
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 25/229 (10%)
Query: 134 WNEVDPNLLG---TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSR 190
WN PNL G ++S D T +W + G+V KT H V D+++
Sbjct: 185 WN---PNLSGHLLSASDDHTICLWDISAVPKEGKVVDA----KTIFTGHTAVVEDVSWHL 237
Query: 191 AGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYLAMVAMN 249
+F SV + + ++D R S + HT + L++N LA + +
Sbjct: 238 LH--ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSAD 295
Query: 250 ACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDI-----QQ 304
V + D+R + +H+ + + W+PH+ + ++G D + +WD+ +Q
Sbjct: 296 KT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 305 MPRAIED--PILAYTAAG--GEINQIQWGATQPDWIAICYNKYLEVLRV 349
P ED P L + G +I+ W +P W+ IC +++V
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-ICSVSEDNIMQV 401
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPR--AIEDPILAYTAA 319
C P RL H+ G++W P+ S H+ +A DDH +WDI +P+ + D +T
Sbjct: 167 CNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226
Query: 320 GGEINQIQW 328
+ + W
Sbjct: 227 TAVVEDVSW 235
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 77/191 (40%), Gaps = 23/191 (12%)
Query: 134 WNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGG 193
W+ + +L G+ + D IW +N +SV AH EV ++F+
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVD--------AHTAEVNCLSFNPYS- 285
Query: 194 GRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVA----MN 249
+ A+ A+ +V ++DLR+L+ +E + ++ W+ + LA +N
Sbjct: 286 -EFILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLN 343
Query: 250 ACEVIILDVRV--------PCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
++ + P + H A ++ +W P+ IC+ +D+ +W
Sbjct: 344 VWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQ 403
Query: 302 IQQMPRAIEDP 312
+ + EDP
Sbjct: 404 MAENIYNDEDP 414
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 144 TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGA 203
+SS D T +W L T G + + H EVY +AFS S GA
Sbjct: 93 SSSWDKTLRLWDLRT-----------GTTYKRFVGHQSEVYSVAFSP---DNRQILSAGA 138
Query: 204 EGSVRMFD-LRHLEHSTIIYEDP-------QHTPLLRLAWNKQDPN--YLAMVAMNA-CE 252
E +++++ L + S+ E+ +++P+++ A NK P Y A V + +
Sbjct: 139 EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSA-NKVQPFAPYFASVGWDGRLK 197
Query: 253 VIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM--PRAIE 310
V + ++ T A H + VN ++ +P+ +I T G D + LIWDI + P+
Sbjct: 198 VWNTNFQIRYTFKA----HESNVNHLSISPNGK-YIATGGKDKKLLIWDILNLTYPQREF 252
Query: 311 DPILAYTAAGGEINQIQWGATQPDWIAICYNKYLEVLRV 349
D AG INQI + + W+A+ ++ +++ +
Sbjct: 253 D-------AGSTINQIAFNP-KLQWVAVGTDQGVKIFNL 283
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 132 FDWNEVDPNLLG---TSSIDTTCTIWCL----ETNQVVGRVNSVSGHVKTQLIAHDKEVY 184
WN PNL G ++S D T +W + + ++V+ N +GH V
Sbjct: 189 LSWN---PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV--------VE 237
Query: 185 DIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYL 243
D+A+ +F SV + + ++D R+ S + HT + L++N L
Sbjct: 238 DVAWHLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 295
Query: 244 AMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQ 303
A + + V + D+R + +H+ + + W+PH+ + ++G D + +WD+
Sbjct: 296 ATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 304 QM--PRAIED-----PILAYTAAG--GEINQIQWGATQPDWIAICYNKYLEVLRV 349
++ ++ ED P L + G +I+ W +P WI IC +++V
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WI-ICSVSEDNIMQV 407
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRA--IEDPILAYTAA 319
C P RL H+ G++W P+ + ++ +A DDH +WDI P+ + D +T
Sbjct: 173 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 232
Query: 320 GGEINQIQW 328
+ + W
Sbjct: 233 TAVVEDVAW 241
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 102/235 (43%), Gaps = 33/235 (14%)
Query: 132 FDWNEVDPNLLG---TSSIDTTCTIWCL----ETNQVVGRVNSVSGHVKTQLIAHDKEVY 184
WN PNL G ++S D T +W + + ++V+ N +GH V
Sbjct: 187 LSWN---PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV--------VE 235
Query: 185 DIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYL 243
D+A+ +F SV + + ++D R+ S + HT + L++N L
Sbjct: 236 DVAWHLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL 293
Query: 244 AMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQ 303
A + + V + D+R + +H+ + + W+PH+ + ++G D + +WD+
Sbjct: 294 ATGSADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 304 QM--PRAIED-----PILAYTAAG--GEINQIQWGATQPDWIAICYNKYLEVLRV 349
++ ++ ED P L + G +I+ W +P WI IC +++V
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WI-ICSVSEDNIMQV 405
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRA--IEDPILAYTAA 319
C P RL H+ G++W P+ + ++ +A DDH +WDI P+ + D +T
Sbjct: 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 230
Query: 320 GGEINQIQW 328
+ + W
Sbjct: 231 TAVVEDVAW 239
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 25/231 (10%)
Query: 132 FDWNEVDPNLLG---TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAF 188
WN PNL G ++S D T +W + RV K H V D+A+
Sbjct: 191 LSWN---PNLNGYLLSASDDHTICLWDINATPKEHRVIDA----KNIFTGHTAVVEDVAW 243
Query: 189 SRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYLAMVA 247
+F SV + + ++D R+ S + HT + L++N LA +
Sbjct: 244 HLLH--ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS 301
Query: 248 MNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM-- 305
+ V + D+R + +H+ + + W+PH+ + ++G D + +WD+ ++
Sbjct: 302 ADKT-VALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 360
Query: 306 PRAIED-----PILAYTAAG--GEINQIQWGATQPDWIAICYNKYLEVLRV 349
++ ED P L + G +I+ W +P WI IC +++V
Sbjct: 361 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WI-ICSVSEDNIMQV 409
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRA--IEDPILAYTAA 319
C P RL H+ G++W P+ + ++ +A DDH +WDI P+ + D +T
Sbjct: 175 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGH 234
Query: 320 GGEINQIQW 328
+ + W
Sbjct: 235 TAVVEDVAW 243
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 232 RLAWNKQDPNYLAMVAMNACEVIILD-VRVP--------CTPVARLNNHRACVNGIAWAP 282
R + Q+P+ +A + +V++ D + P C P RL H+ G++W
Sbjct: 131 RARYXPQNPHIIA-TKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNS 189
Query: 283 HSSCHICTAGDDHQALIWDIQQMPR--AIEDPILAYTAAGGEINQIQW 328
+ S H+ +A DDH +WDI P+ I D +T + + W
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW 237
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 132 FDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRA 191
WN L ++S D T +W + G++ K H V D+A+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDA----KAIFTGHSAVVEDVAWHLL 240
Query: 192 GGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYLAMVAMNA 250
+F SV + + ++D R S + HT + L++N LA + +
Sbjct: 241 H--ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 251 CEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM--PRA 308
V + D+R + +H+ + + W+PH+ + ++G D + +WD+ ++ ++
Sbjct: 299 T-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 309 IED-----PILAYTAAG--GEINQIQWGATQPDWIAIC 339
ED P L + G +I+ W +P W+ IC
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-IC 393
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPR--AIEDPILAYTAA 319
C P RL H+ G++W + S H+ +A DDH +WDI P+ I D +T
Sbjct: 169 CNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGH 228
Query: 320 GGEINQIQW 328
+ + W
Sbjct: 229 SAVVEDVAW 237
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 132 FDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRA 191
WN L ++S D T +W + G++ K H V D+A+
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDA----KAIFTGHSAVVEDVAWHLL 240
Query: 192 GGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR-LAWNKQDPNYLAMVAMNA 250
+F SV + + ++D R S + HT + L++N LA + +
Sbjct: 241 H--ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 298
Query: 251 CEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM--PRA 308
V + D+R + +H+ + + W+PH+ + ++G D + +WD+ ++ ++
Sbjct: 299 T-VALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 309 IED-----PILAYTAAG--GEINQIQWGATQPDWIAIC 339
ED P L + G +I+ W +P W+ IC
Sbjct: 358 AEDAEDGPPELLFIHGGHTAKISDFSWNPNEP-WV-IC 393
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 196 DMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVII 255
D FA G+V + ++++ + + Q+ + LA++ +LA ++ + C V +
Sbjct: 240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQN--ITGLAYSYHSSPFLASISED-CTVAV 296
Query: 256 LDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQAL 298
LD + V R +HR V G+AW+P T G DH+ L
Sbjct: 297 LDADF--SEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 25/225 (11%)
Query: 78 TKIMWIPDRKGVFPDLLATSGDYLRVWRAGEPETRLECILNNNKNSDFCAPLTSFDWNEV 137
T + W+ + KG+ L+A+ + +W E E+ L ++ D L+ F
Sbjct: 98 TDVAWVSE-KGI---LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS---- 149
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRD- 196
D + D + +W L V+ N AH EV +A A G+D
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYN-----------AHSSEVNCVA---ACPGKDT 195
Query: 197 MFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIIL 256
+F S G +G + ++D R + +T I T + W+ + + A V ++
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLV 254
Query: 257 DVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
+++ P + H + G+A++ HSS + + +D + D
Sbjct: 255 NIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 227 HT-PLLRLAWNKQDPNYLAMVAMNACEVIILDVR-----VPC-TPVARLNNHRACVNGIA 279
HT P+L +AW + N +A + + C V++ ++ +P PV L H V +A
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 280 WAPHSSCHICTAGDDHQALIWDI 302
W P + + +AG D+ L+WD+
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 265 VARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQ--MPRAIEDPILAYTAAGGE 322
V + H A V IAW PH+ I + +D ++W+I + + +P++
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 323 INQIQWGAT 331
+ + W T
Sbjct: 134 VGIVAWHPT 142
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 233 LAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAG 292
L+WN +Y+ + + DVRV VA L+ H V G+ WAP H+ + G
Sbjct: 206 LSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGG 260
Query: 293 DDHQALIWDIQQMPRAIED----PILAYTAAGGEINQIQW 328
+D+ +W P A + P+ +T G + + W
Sbjct: 261 NDNLVNVW-----PSAPGEGGWVPLQTFTQHQGAVKAVAW 295
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 233 LAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAG 292
L+WN +Y+ + + DVRV VA L+ H V G+ WAP H+ + G
Sbjct: 195 LSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGG 249
Query: 293 DDHQALIWDIQQMPRAIED----PILAYTAAGGEINQIQW 328
+D+ +W P A + P+ +T G + + W
Sbjct: 250 NDNLVNVW-----PSAPGEGGWVPLQTFTQHQGAVKAVAW 284
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 88/216 (40%), Gaps = 36/216 (16%)
Query: 73 HPYPTTKIMWIPDRKGVFPDLLATSGD-YLRVW--RAGEPETRLECILNNNKNSDFCAPL 129
H P T++++ P VF +++ S D ++VW G+ E L+ ++ ++
Sbjct: 107 HRSPVTRVIFHP----VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD------- 155
Query: 130 TSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFS 189
SFD + LL + S D T +W + + + ++ HD V ++
Sbjct: 156 ISFDHS---GKLLASCSADMTIKLWDFQGFECIRTMH-----------GHDHNVSSVSIM 201
Query: 190 RAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMN 249
G D S + +++M+++ + + H +R+ QD +A + +
Sbjct: 202 PNG---DHIVSASRDKTIKMWEV---QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255
Query: 250 ACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSS 285
+ + C A L HR V I+WAP SS
Sbjct: 256 QTVRVWVVATKECK--AELREHRHVVECISWAPESS 289
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 227 HT-PLLRLAWNKQDPNYLAMVAMNACEVIILDVR-----VPC-TPVARLNNHRACVNGIA 279
HT P+L +AW + N +A + + C V++ ++ +P PV L H V +A
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSED-CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 280 WAPHSSCHICTAGDDHQALIWDI 302
W P + + +AG D+ L+WD+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 233 LAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAG 292
L+WN +Y+ + + DVRV VA L+ H V G+ WAP H+ + G
Sbjct: 115 LSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGG 169
Query: 293 DDHQALIWDIQQMPRAIED----PILAYTAAGGEINQIQW 328
+D+ +W P A + P+ +T G + + W
Sbjct: 170 NDNLVNVW-----PSAPGEGGWVPLQTFTQHQGAVKAVAW 204
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAW-N 236
AH++ ++D G A+ ++ ++++F++ H I P+ R+ W +
Sbjct: 7 AHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 237 KQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH 283
+ LA + + +I + + +A H A VN + WAPH
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 172 VKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLL 231
+ T +H+ ++D G A+ ++ SV++FD+R+ I P+
Sbjct: 5 INTVDTSHEDMIHDAQMDYYG---TRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW 61
Query: 232 RLAW-NKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICT 290
++AW + N LA + + +I + H + VN + WAPH I
Sbjct: 62 QVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILA 121
Query: 291 AGDDHQAL 298
G A+
Sbjct: 122 CGSSDGAI 129
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAW-N 236
AH++ ++D G A+ ++ ++++F++ H I P+ R+ W +
Sbjct: 9 AHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 237 KQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH 283
+ LA + + +I + + +A H A VN + WAPH
Sbjct: 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 112
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAW-N 236
AH++ ++D G A+ ++ ++++F++ H I P+ R+ W +
Sbjct: 7 AHNEMIHDAVMDYYG---KRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 237 KQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH 283
+ LA + + +I + + +A H A VN + WAPH
Sbjct: 64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 73 HPYPTTKIMWIPDRKGVFPDLLATSGDYLRVWRAGEPETRLECILNNNKNSDFCAPLTSF 132
H + ++PD++ L+ SGD V R+ I + S A + S
Sbjct: 156 HKGYASSCQYVPDQE---TRLITGSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSL 211
Query: 133 DWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAG 192
N ++ N+ + S DTT +W L R+ S + V+T H+ ++ + F G
Sbjct: 212 SINSLNANMFISGSCDTTVRLWDL-------RITSRA--VRT-YHGHEGDINSVKFFPDG 261
Query: 193 GGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDP 225
F + +G+ R+FD+R + +P
Sbjct: 262 ---QRFGTGSDDGTCRLFDMRTGHQLQVYNREP 291
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 12/136 (8%)
Query: 195 RDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVI 254
R + +S G++ D+R H + + + LAW + D LA N V
Sbjct: 186 RHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAW-RSDGLQLAS-GGNDNVVQ 242
Query: 255 ILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGD--DHQALIWDIQQMPRAIEDP 312
I D R P NH A V +AW P S + T G D Q W+ R
Sbjct: 243 IWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR----- 296
Query: 313 ILAYTAAGGEINQIQW 328
+ AG ++ + W
Sbjct: 297 -VNTVDAGSQVTSLIW 311
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAW-N 236
AH++ ++D G A+ ++ ++++F++ H I P+ R+ W +
Sbjct: 7 AHNEXIHDAVXDYYG---KRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 237 KQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH 283
+ LA + + I + + +A H A VN + WAPH
Sbjct: 64 PKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNK 237
AH++ ++D G A+ ++ ++++F++ H I P+ R+ W
Sbjct: 7 AHNELIHDAVLDYYG---KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDW-- 61
Query: 238 QDPNY---LAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH 283
P + LA + + +I + + +A H A VN + WAPH
Sbjct: 62 AHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH 110
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 197 MFASVGAEGSVRMFDLRHLEHSTII-YEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVII 255
MF S + +++++D L+ + + +E+ ++ + K + L V +V +
Sbjct: 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTK---HCLVAVGTRGPKVQL 170
Query: 256 LDVRV-PCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQ 304
D++ C+ + L HR + ++W+P + TA D + +WD+++
Sbjct: 171 CDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 36/192 (18%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSR-----AG 192
D + S D T +W L T G + + H K+V +AFS
Sbjct: 74 DGQFALSGSWDGTLRLWDLTT-----------GTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 193 GGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACE 252
G RD + V + ++ HS + +R + N +P +V+ +
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHS-------EWVSCVRFSPNSSNP---IIVSCGWDK 172
Query: 253 VIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHIC-TAGDDHQALIWDIQQMPRAIED 311
++ + C H +N + +P S +C + G D QA++WD+ +
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---- 226
Query: 312 PILAYTAAGGEI 323
YT GG+I
Sbjct: 227 ---LYTLDGGDI 235
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 36/192 (18%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSR-----AG 192
D + S D T +W L T G + + H K+V +AFS
Sbjct: 97 DGQFALSGSWDGTLRLWDLTT-----------GTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 193 GGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACE 252
G RD + V + ++ HS + +R + N +P +V+ +
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHS-------EWVSCVRFSPNSSNP---IIVSCGWDK 195
Query: 253 VIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHIC-TAGDDHQALIWDIQQMPRAIED 311
++ + C H +N + +P S +C + G D QA++WD+ +
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS--LCASGGKDGQAMLWDLNEGKH---- 249
Query: 312 PILAYTAAGGEI 323
YT GG+I
Sbjct: 250 ---LYTLDGGDI 258
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
DPNLL + S D +W ++T+ +V V GH + ++++ D YD+ +
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSAD---YDLLGEK------- 174
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
S G + S++++ + I E + P
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
DPNLL + S D +W ++T+ +V V GH + ++++ D YD+ +
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSAD---YDLLGEK------- 175
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
S G + S++++ + I E + P
Sbjct: 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 207
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 47/206 (22%)
Query: 34 PDKLFRLAIGSYVEEYNNKVQIVALNED-----------------ISEFGPKSTI----- 71
D+ F + + + +E + N+V+ VA + D E G +
Sbjct: 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150
Query: 72 DHPYPTTKIMWIPDRKGVFPDLLATSG--DYLRVWRAGEPETRLECILNNNK----NSDF 125
+H ++W P LLA+S D +R+W+ + + +LN ++ +SDF
Sbjct: 151 EHSQDVKHVIWHPSEA-----LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDF 205
Query: 126 CAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYD 185
F L + S D+T +W + + V + + H ++VY+
Sbjct: 206 DKTEGVF--------RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDV--HKRQVYN 255
Query: 186 IAFSRAGGGRDMFASVGAEGSVRMFD 211
+A+ G + ASVGA+G + +++
Sbjct: 256 VAWGFNG----LIASVGADGVLAVYE 277
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
DPNLL + S D +W ++T+ +V V GH + ++++ D YD+ +
Sbjct: 122 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSAD---YDLLGEK------- 170
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
S G + S++++ + I E + P
Sbjct: 171 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 202
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
DPNLL + S D +W ++T+ +V V GH + ++++ D YD+ +
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSAD---YDLLGEK------- 174
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
S G + S++++ + I E + P
Sbjct: 175 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 206
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
DPNLL + S D +W ++T+ +V V GH + ++++ D YD+ +
Sbjct: 163 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSAD---YDLLGEK------- 211
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
S G + S++++ + I E + P
Sbjct: 212 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNP 243
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 36/230 (15%)
Query: 93 LLATSGDY-LRVWRAGEPETRLECILNNNKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTC 151
L++ SGD +R+W + L + + + +P D + S+D
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP--------GDGKYIAAGSLDRAV 231
Query: 152 TIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFD 211
+W ET +V R++S + H VY + F+R G S + SV++++
Sbjct: 232 RVWDSETGFLVERLDSEN----ESGTGHKDSVYSVVFTRDG---QSVVSGSLDRSVKLWN 284
Query: 212 LRHLEHST-----------IIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRV 260
L++ + + + Y H + Q+ Y+ + V+ D +
Sbjct: 285 LQNANNKSDSKTPNSGTCEVTY--IGHKDFVLSVATTQNDEYI-LSGSKDRGVLFWD-KK 340
Query: 261 PCTPVARLNNHRACVNGIAWAPHSSCH-----ICTAGDDHQALIWDIQQM 305
P+ L HR V +A A SS T D +A IW +++
Sbjct: 341 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQV-------VGRVNSVS-------------------- 169
+D N + TSS DTTC +W +ET Q G V S+S
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 170 ----GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLR 213
G + H+ ++ I F G + FA+ + + R+FDLR
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQV-------VGRVNSVS-------------------- 169
+D N + TSS DTTC +W +ET Q G V S+S
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 170 ----GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLR 213
G + H+ ++ I F G + FA+ + + R+FDLR
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQV-------VGRVNSVS-------------------- 169
+D N + TSS DTTC +W +ET Q G V S+S
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 170 ----GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLR 213
G + H+ ++ I F G + FA+ + + R+FDLR
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQV-------VGRVNSVS-------------------- 169
+D N + TSS DTTC +W +ET Q G V S+S
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 170 ----GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLR 213
G + H+ ++ I F G + FA+ + + R+FDLR
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLR 256
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQV-------VGRVNSVS-------------------- 169
+D N + TSS DTTC +W +ET Q G V S+S
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 170 ----GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLR 213
G + H+ ++ I F G + FA+ + + R+FDLR
Sbjct: 223 DVREGMCRQTFTGHESDINAICFFPNG---NAFATGSDDATCRLFDLR 267
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 200 SVGAEGSVRMFDLRHL--EHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACE--VII 255
+V + G ++++D R E S I+ PL + + PN +VA + + I
Sbjct: 207 TVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCV---DRHPNQQHVVATGGQDGMLSI 263
Query: 256 LDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
DVR PV+ L H A + + + P + H+ T +D WD
Sbjct: 264 WDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 33/193 (17%)
Query: 113 LEC--ILNNNKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSG 170
LEC IL + S C + D ++ T S D+T +W + T G
Sbjct: 163 LECKRILTGHTGSVLCL--------QYDERVIITGSSDSTVRVWDVNT-----------G 203
Query: 171 HVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPL 230
+ LI H + V + F+ M + + S+ ++D+ T+ H
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNG-----MMVTCSKDRSIAVWDMASPTDITLRRVLVGH--- 255
Query: 231 LRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICT 290
R A N D + +V+ + I + C V LN H+ GIA + + +
Sbjct: 256 -RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK---RGIACLQYRDRLVVS 311
Query: 291 AGDDHQALIWDIQ 303
D+ +WDI+
Sbjct: 312 GSSDNTIRLWDIE 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,558,580
Number of Sequences: 62578
Number of extensions: 490420
Number of successful extensions: 1096
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1021
Number of HSP's gapped (non-prelim): 91
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)