RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17688
(349 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 62.4 bits (150), Expect = 1e-11
Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 18/170 (10%)
Query: 132 FDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRA 191
D L + + D + +W + G + H+ ++ I F
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVRE-----------GMCRQTFTGHESDINAICFFPN 237
Query: 192 GGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNAC 251
G + FA+ + + R+FDLR + D + ++++K L +
Sbjct: 238 G---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLL-AGYDDF 292
Query: 252 EVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
+ D L H V+ + + T D IW+
Sbjct: 293 NCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340
Score = 44.0 bits (102), Expect = 1e-05
Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 24/152 (15%)
Query: 61 DISEFGPKSTI-DHPYPTTKIMWIPDRKGVFPDLLATSGDYLRVWRAGEPETRLECILNN 119
D+ E + T H I + P+ AT D + R + L
Sbjct: 212 DVREGMCRQTFTGHESDINAICFFPNGN-----AFATGSDDATCRL---FDLRADQELMT 263
Query: 120 NKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAH 179
+ + +TS +++ LL D C +W G L H
Sbjct: 264 YSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGV-----------LAGH 311
Query: 180 DKEVYDIAFSRAGGGRDMFASVGAEGSVRMFD 211
D V + + G A+ + +++++
Sbjct: 312 DNRVSCLGVTDDG---MAVATGSWDSFLKIWN 340
Score = 35.5 bits (80), Expect = 0.008
Identities = 14/133 (10%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 196 DMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVII 255
+F S + S +++D+R + + + + + N A + +A +
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFP-NGNAFATGSDDATCRLF 253
Query: 256 LDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILA 315
+N + ++++ + DD +WD + D
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALKA-----DRAGV 307
Query: 316 YTAAGGEINQIQW 328
++ +
Sbjct: 308 LAGHDNRVSCLGV 320
Score = 30.5 bits (67), Expect = 0.27
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 5/112 (4%)
Query: 235 WNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDD 294
+ L + + DVR H + +N I + P+ + T DD
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVR-EGMCRQTFTGHESDINAICFFPNGN-AFATGSDD 247
Query: 295 HQALIWDIQQMPRAIEDPILAYTAAGGEINQIQWGATQPDWIAICYNKYLEV 346
++D++ + I + + + +A + V
Sbjct: 248 ATCRLFDLRADQELMTYSHDNIICG---ITSVSFSKSGRLLLAGYDDFNCNV 296
Score = 30.5 bits (67), Expect = 0.32
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 5/142 (3%)
Query: 165 VNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYED 224
V + + L H ++Y + + + S +G + ++D I
Sbjct: 40 VGRIQMRTRRTLRGHLAKIYAMHWGTDS---RLLVSASQDGKLIIWDSYTTNKVHAI--P 94
Query: 225 PQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHS 284
+ + ++ A+ N C + L R V+R
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 285 SCHICTAGDDHQALIWDIQQMP 306
+ + ++GD AL
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQ 176
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 61.4 bits (147), Expect = 4e-11
Identities = 51/311 (16%), Positives = 100/311 (32%), Gaps = 30/311 (9%)
Query: 16 IYKYEAPWPLYSMNWSVRPDKLFRLAIGSYVEEYNNKVQIVALNED----ISEFGPKSTI 71
+Y+ + ++ +K S + ++ V + D + +
Sbjct: 87 VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146
Query: 72 DHPYPTTKIMWIPDRKGVFPDLLATSGDYLRVWRAGEPETRLECILNNNKNSDFCAPLTS 131
KI+ I L ++ T L + S +
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG 206
Query: 132 FDWNEVDP---NLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAF 188
V P + S+D +W ET +V R++S + H VY + F
Sbjct: 207 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES----GTGHKDSVYSVVF 262
Query: 189 SRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQ---------D 239
+R G S + SV++++L++ + + T + +K +
Sbjct: 263 TRDG---QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319
Query: 240 PNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCH-----ICTAGDD 294
Y+ + + V+ D + P+ L HR V +A A SS T D
Sbjct: 320 DEYILSGSKD-RGVLFWDKK-SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377
Query: 295 HQALIWDIQQM 305
+A IW +++
Sbjct: 378 CKARIWKYKKI 388
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 52.2 bits (123), Expect = 4e-08
Identities = 18/215 (8%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 122 NSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDK 181
+S P++ WN+ D + + I+ N+ V +L H+
Sbjct: 3 HSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWV---------QVHELKEHNG 52
Query: 182 EVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPN 241
+V + ++ + + G + + ++ L+ + + + W +
Sbjct: 53 QVTGVDWAPDS---NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109
Query: 242 YLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
+ + + + +S + D + I+
Sbjct: 110 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169
Query: 302 IQQMPRAIEDPILAYTAAGGEINQIQWGATQPDWI 336
+ + + ++ W+
Sbjct: 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 204
Score = 32.9 bits (73), Expect = 0.050
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 271 HRACVNGIAWAP---HSSCHICTAGDDHQALIWDIQQMPRAIED 311
H+ V+ I+ CT G D IWD++ + A++D
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKD 367
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 46.3 bits (108), Expect = 2e-06
Identities = 25/170 (14%), Positives = 58/170 (34%), Gaps = 12/170 (7%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIA------FSRA 191
D L+ + S D T +W + T + + V+ A + I+ ++
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 192 GGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNAC 251
G S + +++M+D+ + H +R ++ A +
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMC---LMTLVGHDNWVRGVLFHSGGKFILSCADD-K 269
Query: 252 EVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
+ + D + + LN H V + + + ++ T D +W+
Sbjct: 270 TLRVWDYK-NKRCMKTLNAHEHFVTSLDFHKTAP-YVVTGSVDQTVKVWE 317
Score = 43.2 bits (100), Expect = 2e-05
Identities = 27/212 (12%), Positives = 60/212 (28%), Gaps = 35/212 (16%)
Query: 132 FDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRA 191
+ + + ++S D T +W ++T V H + V + ++
Sbjct: 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----------KTFTGHREWVRMVRPNQD 154
Query: 192 GGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNAC 251
G + AS + +VR++ + E + E + A +
Sbjct: 155 G---TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 252 EV---------------IILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQ 296
+ I + + L H V G+ + I + DD
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT 270
Query: 297 ALIWDIQQMPRAIEDPILAYTAAGGEINQIQW 328
+WD + + A + + +
Sbjct: 271 LRVWDYKNK-----RCMKTLNAHEHFVTSLDF 297
Score = 35.5 bits (80), Expect = 0.007
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 264 PVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAGGEI 323
L+ HR+ V + + P S + +A +D +WD + D +
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG-----DFERTLKGHTDSV 62
Query: 324 NQIQWGATQPDWIAICYNKY 343
I + + + +
Sbjct: 63 QDISFDHSGKLLASCSADMT 82
Score = 33.9 bits (76), Expect = 0.020
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 9/133 (6%)
Query: 173 KTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLR 232
K L H V + F + S + +++++D E HT ++
Sbjct: 10 KYALSGHRSPVTRVIFHPVF---SVMVSASEDATIKVWD---YETGDFERTLKGHTDSVQ 63
Query: 233 LAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAG 292
LA + + + C ++H + HI +A
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV---SIMPNGDHIVSAS 120
Query: 293 DDHQALIWDIQQM 305
D +W++Q
Sbjct: 121 RDKTIKMWEVQTG 133
Score = 33.2 bits (74), Expect = 0.044
Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 21/179 (11%)
Query: 127 APLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDI 186
+P+T ++ +++ ++S D T +W ET L H V DI
Sbjct: 18 SPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERT-----------LKGHTDSVQDI 65
Query: 187 AFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMV 246
+F +G ++ + H ++ PN +V
Sbjct: 66 SFDHSGKLLASC--------SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 247 AMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM 305
+ + + I + V HR V + + I + +D +W +
Sbjct: 118 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATK 175
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 39.9 bits (91), Expect = 3e-04
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 253 VIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDI 302
+ I V+ P + LN H+ VN + W S + ++G D W++
Sbjct: 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS--TLVSSGADACIKRWNV 286
Score = 34.5 bits (77), Expect = 0.015
Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 14/139 (10%)
Query: 73 HPYPTTKIMWIPDRKGVFPDLLATSGDYLRVWRAGEPETRLECILNNNKNSDFCAPLTSF 132
+ I P + + + +R + +
Sbjct: 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 220
Query: 133 DWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAG 192
+ E++ +L+ T S+DT I+ ++ + L AH V ++ +
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKR----------PMKIIKALNAHKDGVNNLLWETPS 270
Query: 193 GGRDMFASVGAEGSVRMFD 211
S GA+ ++ ++
Sbjct: 271 ----TLVSSGADACIKRWN 285
Score = 33.4 bits (74), Expect = 0.034
Identities = 7/80 (8%), Positives = 25/80 (31%), Gaps = 5/80 (6%)
Query: 264 PVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAGGEI 323
+ ++ H + + P + + D + + W M + + I++ + +
Sbjct: 5 VLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59
Query: 324 NQIQWGATQPDWIAICYNKY 343
I +++
Sbjct: 60 YSSISWDDTLKVNGITKHEF 79
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 39.8 bits (91), Expect = 3e-04
Identities = 11/131 (8%), Positives = 34/131 (25%), Gaps = 4/131 (3%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHT-PLLRLAWN 236
A + DI + + +GS+ ++ + + + ++ PLL +
Sbjct: 9 APKDYISDIKIIPSK---SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 237 KQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQ 296
+ + + + + + P N + I + +
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 297 ALIWDIQQMPR 307
+
Sbjct: 126 VIDPRNYGDGV 136
Score = 35.2 bits (79), Expect = 0.008
Identities = 17/178 (9%), Positives = 42/178 (23%), Gaps = 10/178 (5%)
Query: 130 TSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFS 189
+ +LL +S D + T++ + + Q + + + F
Sbjct: 15 SDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDL--------LQSLRYKHPLLCCNFI 65
Query: 190 RAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMN 249
+ +V E + E + + + +
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 250 ACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPR 307
+ V NN + +SS I ++ Q + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG-MNNSQVQWFRLPLCED 182
Score = 27.5 bits (59), Expect = 2.7
Identities = 34/315 (10%), Positives = 71/315 (22%), Gaps = 45/315 (14%)
Query: 26 YSMNWSVRPDKLFRLAIGSYVEEYNNKVQIVALNEDISEFGPKSTIDHPYPTTKIMWIPD 85
+ P K L I S+ + + + + ++ + +P +I +
Sbjct: 15 SDIKII--PSKSL-LLITSW----DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 86 RKGVFPDLLATSGDYLRVWRAGEPETRLECILNNNKNSDFCAPLTSFDWNEVDPNLLGTS 145
DL G + N ++ ++ +
Sbjct: 68 T-----DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIA----A 118
Query: 146 SIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEG 205
S D + T++ +
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN--------SSRLIVGMNNS 170
Query: 206 SVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVR------ 259
V+ F L E E+ +R + V +
Sbjct: 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
Query: 260 --------VPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD------IQQM 305
+ N VN I ++P + TAG D W+ I+
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNF 289
Query: 306 PRAIEDPILAYTAAG 320
+ ED ++ +
Sbjct: 290 AKFNEDSVVKIACSD 304
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 39.1 bits (89), Expect = 5e-04
Identities = 23/179 (12%), Positives = 57/179 (31%), Gaps = 33/179 (18%)
Query: 131 SFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSR 190
+ + + D + ++S D T +W T + V L H + + + +
Sbjct: 140 AVNVVDFDDKYIVSASGDRTIKVWNTSTCEFV-----------RTLNGHKRGIACLQYRD 188
Query: 191 AGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNA 250
+ S ++ ++R++D+ ++ + + N +
Sbjct: 189 -----RLVVSGSSDNTIRLWDIECGACLRVLEGHEELV------RCIRFDNKRIVSGAYD 237
Query: 251 CEVIILDVR--------VPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWD 301
++ + D+ + L H V + + I ++ D LIWD
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF---QIVSSSHDDTILIWD 293
Score = 29.0 bits (63), Expect = 0.70
Identities = 22/201 (10%), Positives = 51/201 (25%), Gaps = 22/201 (10%)
Query: 123 SDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKE 182
S+ + + D + + D T IW T + + +G V
Sbjct: 12 SETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 183 VYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNY 242
+ + S + + HL + + + + W+ P
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV-WDMASPTD 127
Query: 243 LAMVAMNACEVIILDVRVPCTPVAR------------------LNNHRACVNGIAWAPHS 284
+ + + ++V + GIA +
Sbjct: 128 ITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187
Query: 285 SCHICTAGDDHQALIWDIQQM 305
+ + D+ +WDI+
Sbjct: 188 DRLVVSGSSDNTIRLWDIECG 208
Score = 27.1 bits (58), Expect = 3.1
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 265 VARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQ 303
+ R++ G+ + I + D+ IWD
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN 43
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 38.8 bits (89), Expect = 8e-04
Identities = 22/162 (13%), Positives = 48/162 (29%), Gaps = 18/162 (11%)
Query: 144 TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGA 203
T + ++ ++V I V+ S +G +G
Sbjct: 37 TLRDAGQIALVDGDSKKIVKV------------IDTGYAVHISRMSASG---RYLLVIGR 81
Query: 204 EGSVRMFDLRHLEHSTI--IYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVP 261
+ + M DL E + + I + + + + Y A + I+D
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141
Query: 262 CTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQ 303
P ++ V+ + P A +H I +++
Sbjct: 142 E-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 37.9 bits (86), Expect = 0.001
Identities = 29/251 (11%), Positives = 69/251 (27%), Gaps = 38/251 (15%)
Query: 86 RKGVFPDLLATSGD--YLRVWRAGEPE-------TRLECILNNNKNSDFCAPLTSFDWNE 136
R L+AT+ L +R + +L+ + ++ K F A +
Sbjct: 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQL-------IAHDKEVYDIAFS 189
+ + L + + T IW +++ +L + + + S
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193
Query: 190 RAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMV--- 246
G + A+ G+V++ +L L + + +++
Sbjct: 194 ERG----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 247 --------------AMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAG 292
+ H + V +++ AG
Sbjct: 250 HDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AG 308
Query: 293 DDHQALIWDIQ 303
D + WD++
Sbjct: 309 WDGKLRFWDVK 319
Score = 36.8 bits (83), Expect = 0.003
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 1/77 (1%)
Query: 137 VDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRD 196
+ + S D +W + + H + H +V A R
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ-AIERDAFELC 80
Query: 197 MFASVGAEGSVRMFDLR 213
+ A+ G + + +
Sbjct: 81 LVATTSFSGDLLFYRIT 97
Score = 33.7 bits (75), Expect = 0.026
Identities = 15/182 (8%), Positives = 50/182 (27%), Gaps = 29/182 (15%)
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQH---------- 227
AHD +++ ++ S +G ++++D + L++ + H
Sbjct: 12 AHDADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 228 TPLLRLAWNKQDPNYLAMVAMNACEVIILDVR---------VPCTPVARLNNHRACVNGI 278
L + + + +A + + +++ + + + + +
Sbjct: 67 DVLQAIERDAFELCLVATTSFS-GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 279 AWAPHSSC----HICTAGDDHQALIWDIQQMPRAIEDPILAYTAAGGEINQIQWGATQPD 334
W + + IW L ++ ++ T
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 335 WI 336
+
Sbjct: 186 FA 187
Score = 27.9 bits (60), Expect = 1.9
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 263 TPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQ 304
H A + ++ + D +WD +
Sbjct: 5 ATANAGKAHDADIFSVSACNS---FTVSCSGDGYLKVWDNKL 43
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 35.7 bits (80), Expect = 0.007
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 132 FDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRA 191
F + +D T D T +W + T++ V + +++ +
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCV-----------QKWTLDKQQLGNQQVGVV 304
Query: 192 GGGRDMFASVGAEGSVRMFDL 212
G S+ +G++ ++L
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
Score = 28.7 bits (62), Expect = 1.0
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 209 MFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVP-CTPVAR 267
FD + E I +D + A + D A V + + + DV C
Sbjct: 232 CFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD-ATIRVWDVTTSKCVQKWT 290
Query: 268 LNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDI 302
L+ + + + I + D +++
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
Score = 26.4 bits (56), Expect = 6.0
Identities = 23/265 (8%), Positives = 61/265 (23%), Gaps = 22/265 (8%)
Query: 73 HPYPTTKIMWIPDRKGVFPDLLATSGDYLRV---WRAGEPETRLECILNNNKNSDFCAPL 129
T + + P + + L + + +V + E+ + ++ P+
Sbjct: 62 GSSVVTTVKFSPIKGSQY---LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 118
Query: 130 TSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFS 189
+ W + E G S ++ + +
Sbjct: 119 SDISW-----------DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHL 167
Query: 190 RAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMN 249
+ V ++ Q + + + ++ ++ V +
Sbjct: 168 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 227
Query: 250 ACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAI 309
+ A + S T G D +WD+
Sbjct: 228 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---- 283
Query: 310 EDPILAYTAAGGEINQIQWGATQPD 334
+ +T ++ Q G
Sbjct: 284 -KCVQKWTLDKQQLGNQQVGVVATG 307
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 35.5 bits (80), Expect = 0.007
Identities = 11/209 (5%), Positives = 41/209 (19%), Gaps = 20/209 (9%)
Query: 138 DPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDM 197
+ ++ + + ++ V K+ ++ + R
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVY----------KSCVMPDKFGPGTAMMAPD--NRTA 54
Query: 198 FASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNK--QDPNYLAMVAMNACEVII 255
+ G + DL +++ + R ++ +N + +
Sbjct: 55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN 114
Query: 256 LDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILA 315
V + + + ++ +
Sbjct: 115 DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM------ 168
Query: 316 YTAAGGEINQIQWGATQPDWIAICYNKYL 344
G + + Y
Sbjct: 169 DVKTGKYTVALPLRNWNRKGYSAPDVLYF 197
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 34.5 bits (77), Expect = 0.018
Identities = 26/219 (11%), Positives = 56/219 (25%), Gaps = 20/219 (9%)
Query: 129 LTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAF 188
+T + + N + T + D ++ + + QL HD V+ + +
Sbjct: 16 ITCLQF---EDNYVITGADDKMIRVYDSINKKFL-----------LQLSGHDGGVWALKY 61
Query: 189 SRAG----GGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLA 244
+ G G D V + +ST+ D ++ N L
Sbjct: 62 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121
Query: 245 MVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPH--SSCHICTAGDDHQALIWDI 302
+ + + P+ H S + G+ + +D
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181
Query: 303 QQMPRAIEDPILAYTAAGGEINQIQWGATQPDWIAICYN 341
+ + Y +G I +
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 220
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 32.2 bits (71), Expect = 0.092
Identities = 17/162 (10%), Positives = 36/162 (22%), Gaps = 20/162 (12%)
Query: 144 TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGA 203
+S ++ + +N+V I S G ++ +
Sbjct: 7 ANSESDNISVIDVTSNKVTAT------------IPVGSNPMGAVISPD--GTKVYVANAH 52
Query: 204 EGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCT 263
V + D + P+ + N + +
Sbjct: 53 SNDVSIIDTATNNVIATVPAGSSPQ------GVAVSPDGKQVYVTNMASSTLSVIDTTSN 106
Query: 264 PVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQM 305
VA G+A +P T D + +
Sbjct: 107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 31.5 bits (69), Expect = 0.13
Identities = 14/136 (10%), Positives = 40/136 (29%), Gaps = 7/136 (5%)
Query: 170 GHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTP 229
G + H+K + ++ S G S AEG + +D+ + + +
Sbjct: 2 GSIDQVRYGHNKAITALSSSADG---KTLFSADAEGHINSWDISTGISNRVFPDVHAT-M 57
Query: 230 LLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHIC 289
+ + + + ++ ++ ++ + A + I
Sbjct: 58 ITGIKTTSKGDL---FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 114
Query: 290 TAGDDHQALIWDIQQM 305
A I+ ++
Sbjct: 115 VAACYKHIAIYSHGKL 130
Score = 27.6 bits (59), Expect = 2.4
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 270 NHRACVNGIAWAPHSSCHICTAGDDHQALIWDI 302
+ + VN + W + I +AG D W++
Sbjct: 267 HAMSSVNSVIWLNET--TIVSAGQDSNIKFWNV 297
Score = 26.9 bits (57), Expect = 4.2
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 144 TSSIDTTCTIWCLETNQVVGRVNSVSGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGA 203
T S+D + +W + S H AH + S G
Sbjct: 241 TGSLDNSVIVWNMNKP---------SDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288
Query: 204 EGSVRMFDL 212
+ +++ +++
Sbjct: 289 DSNIKFWNV 297
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 31.3 bits (69), Expect = 0.16
Identities = 5/36 (13%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 267 RLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDI 302
+ + V + +I T D +A ++++
Sbjct: 301 FQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEV 335
Score = 30.2 bits (66), Expect = 0.38
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 270 NHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILAYTAAGGEINQIQW 328
NH V + + + H+ T G +WDI L I +
Sbjct: 49 NHGEVVCAVTISNPTR-HVYTGGKGC-VKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Score = 29.8 bits (65), Expect = 0.44
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 177 IAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTII--YEDPQHT-PLLRL 233
+ H + V + S G +G V+++D+ H + + + + +
Sbjct: 48 LNHGEVVCAVTISNPT----RHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103
Query: 234 AWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGD 293
D L + + I A L + +A +P S D
Sbjct: 104 KLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 294 DHQALIWDIQQMP 306
+ A+ Q
Sbjct: 163 GNIAVWDLHNQTL 175
Score = 27.1 bits (58), Expect = 3.8
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 5/99 (5%)
Query: 205 GSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTP 264
G L + + + + L + + + EV+ ++
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261
Query: 265 VARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQ 303
+ H +CV + +A + G D+ W
Sbjct: 262 ----HLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTP 295
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 30.9 bits (68), Expect = 0.20
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 7/133 (5%)
Query: 196 DMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVII 255
S + S+R++D+ + T + L N L V I
Sbjct: 188 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-----KDNILVS-GNADSTVKI 241
Query: 256 LDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQALIWDIQQMPRAIEDPILA 315
D++ + L + + + + T+ DD +WD++ L
Sbjct: 242 WDIK-TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLE 300
Query: 316 YTAAGGEINQIQW 328
+GG + +I+
Sbjct: 301 SGGSGGVVWRIRA 313
Score = 30.2 bits (66), Expect = 0.37
Identities = 25/194 (12%), Positives = 48/194 (24%), Gaps = 23/194 (11%)
Query: 129 LTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVV-------GRVNSVS----GHVKTQLI 177
+T + N + + S D T +W T + + G V S +
Sbjct: 20 ITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTD 76
Query: 178 AHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHTPLLRLAWNK 237
K ++V + +T+ D + L +
Sbjct: 77 RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH 136
Query: 238 QDPNYLAMVAMNACEVIILDVRV------PCTPVARLNNHRACVNGIAWAPHSSCHICTA 291
D V T + L H V + + H+ +
Sbjct: 137 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI---HVVSG 193
Query: 292 GDDHQALIWDIQQM 305
D +WD++
Sbjct: 194 SLDTSIRVWDVETG 207
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 28.7 bits (62), Expect = 1.1
Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 2/105 (1%)
Query: 239 DPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAGDDHQAL 298
P + N V + V T H +P S + +
Sbjct: 26 TPAGDKIQYCNGTSVYTVPVGSL-TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVR 83
Query: 299 IWDIQQMPRAIEDPILAYTAAGGEINQIQWGATQPDWIAICYNKY 343
IWD Q ++ I ++ +I+
Sbjct: 84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128
Score = 25.6 bits (54), Expect = 8.6
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 3/121 (2%)
Query: 169 SGHVKTQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTIIYEDPQHT 228
S H + S +G AS G+VR++D H
Sbjct: 47 SLTDTEIYTEHSHQTTVAKTSPSG---YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 103
Query: 229 PLLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHI 288
P+ ++W+ + A+ + + RA + I
Sbjct: 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 163
Query: 289 C 289
Sbjct: 164 S 164
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 27.3 bits (59), Expect = 2.9
Identities = 25/262 (9%), Positives = 51/262 (19%), Gaps = 47/262 (17%)
Query: 43 GSYVEEYNNKVQIVALNEDISEFGPKSTIDHPYPTTKIMWIPDRKGVFPDLLATSGDYLR 102
G + N D S ID ++ P F L SG L
Sbjct: 86 GKRLYVANITPAASVTVIDAVSKKMLSEIDTAA---CVLAYPAGDDRFTALCE-SGKALT 141
Query: 103 VWRAGEPETRLECILNNNKNSDFCAPLTSFDWNEVDPNLLGTSSIDTTCTIWCLETNQVV 162
V + + + + D + + ++ ++
Sbjct: 142 VTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYK---GDYLFTTYGGNVRSADFSGDKPA 198
Query: 163 GRVNSVSGHVK--TQLIAHDKEVYDIAFSRAGGGRDMFASVGAEGSVRMFDLRHLEHSTI 220
S + A + G +GS
Sbjct: 199 -FGKPWSLLTDAERAEGWRPGGMQQTAVQAKQNRYYVLMHKGTDGS-------------- 243
Query: 221 IYEDPQHTPLLRLAWNKQDPNYLAMVAMNACEVIILDVRVPCTPVARLNNHRACVNGIAW 280
++DP + + + + + V L I
Sbjct: 244 -HKDPGTQVWV--------------YDLKSKQRVARWDLAQ-QKVEPLV-------SIQV 280
Query: 281 APHSSCHICTAGDDHQALIWDI 302
+ ++ D
Sbjct: 281 SEDDKPLFYGLTATSDLVVMDA 302
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.439
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,390,688
Number of extensions: 64707
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 63
Length of query: 349
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 263
Effective length of database: 1,226,816
Effective search space: 322652608
Effective search space used: 322652608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)