BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17689
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 131/207 (63%), Positives = 174/207 (84%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
K +++ +Y+++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC
Sbjct: 72 LKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQC 131
Query: 70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++G
Sbjct: 132 KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 191
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
EHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++ +H VV+SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWA 251
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
IGLS+A L +++ N ++H IST+I+
Sbjct: 252 IGLSVADLAESIMKNLRRVHPISTMIK 278
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 295 bits (754), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 131/207 (63%), Positives = 174/207 (84%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
K +++ +Y+++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC
Sbjct: 71 LKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQC 130
Query: 70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
LLIVSNPVDILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++G
Sbjct: 131 KLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLG 190
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
EHGDSSVPVWSGVNVAGV+L+ +NP +GT+ D E++ +H VV+SAYE+I+LKGYTSWA
Sbjct: 191 EHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWA 250
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
IGLS+A L +++ N ++H IST+I+
Sbjct: 251 IGLSVADLAESIMKNLRRVHPISTMIK 277
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 133/216 (61%), Positives = 175/216 (81%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
V+ S F ++ +Y+++ S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIP
Sbjct: 62 VMDLQHGSLFLKTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIP 121
Query: 61 NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
NIVKYSP C L++VSNPVDILTYV+WKLSGFP++RVIGSGTNLDS RFR L+ +KL L P
Sbjct: 122 NIVKYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHP 181
Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
S + +I+GEHGDSSVPVWSGVNVAGV+L+ +NP +GTEGD E + +H +VV+ AYE+I
Sbjct: 182 SSCHAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVI 241
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
+LKGYTSWAIG+S+A L +++ N +K+H +STL+Q
Sbjct: 242 KLKGYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQ 277
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 288 bits (736), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 129/197 (65%), Positives = 168/197 (85%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y ++ SR+V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVKYSP C LL+VSNPVD
Sbjct: 82 DYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD 141
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+I+GEHGDSSVPVW
Sbjct: 142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV+L+ ++P +GT+ D E + +H +VV+SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 202 SGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLKGYTSWAIGLSVADLAE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
+++ N ++H IST+I+
Sbjct: 262 SIMKNLRRVHPISTMIK 278
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 285 bits (730), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 128/197 (64%), Positives = 170/197 (86%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+++ S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 82 DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD 141
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV+L+E+NP +GT+ D+E + ++H VV SAYE+I+LKGYT+WAIGLS+A L
Sbjct: 202 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
++L N ++IH +ST+++
Sbjct: 262 SMLKNLSRIHPVSTMVK 278
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 285 bits (730), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 128/197 (64%), Positives = 170/197 (86%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+++ S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 82 DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD 141
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WKLSG PK+RVIGSG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 142 ILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV+L+E+NP +GT+ D+E + ++H VV SAYE+I+LKGYT+WAIGLS+A L
Sbjct: 202 SGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 261
Query: 200 TLLNNTNKIHAISTLIQ 216
++L N ++IH +ST+++
Sbjct: 262 SMLKNLSRIHPVSTMVK 278
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 285 bits (729), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 130/207 (62%), Positives = 169/207 (81%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
K ++ +Y+++ S++V+VTAG RQ+EGESRL+LV+RNVNIFK IIPNI+KYSP C
Sbjct: 72 LKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNC 131
Query: 70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
LL+VSNPVDILTYV+WKLSG P+NRVIGSGTNLDS RFR L+ +KLG+ P + +G++IG
Sbjct: 132 ILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIG 191
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
EHGDSSVPVWSGVNVAGV L+ +NP +GT+ D E++ +H VV+SAYE+I+LKGYTSWA
Sbjct: 192 EHGDSSVPVWSGVNVAGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLKGYTSWA 251
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLIQ 216
IG+S A L ++L N K H +STL++
Sbjct: 252 IGMSAADLCQSILKNLRKCHPVSTLVK 278
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 126/197 (63%), Positives = 168/197 (85%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y ++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LLIVSNPVD
Sbjct: 81 DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG+NVAGV+L+ ++P +GT+ D E++ ++H VV SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 201 SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
+++ N ++H +ST+I+
Sbjct: 261 SIMKNLRRVHPVSTMIK 277
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 284 bits (727), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 126/197 (63%), Positives = 168/197 (85%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y ++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LLIVSNPVD
Sbjct: 81 DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG+NVAGV+L+ ++P +GT+ D E++ ++H VV SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 201 SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
+++ N ++H +ST+I+
Sbjct: 261 SIMKNLRRVHPVSTMIK 277
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 284 bits (726), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 124/197 (62%), Positives = 169/197 (85%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSP C LL+VSNPVD
Sbjct: 81 DYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ S +G+I+GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG+NVAGV+L+ ++P +GT+ D E++ ++H VV+SAYE+I+LKGYT+WAIGLS+A L
Sbjct: 201 SGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
+++ N ++H IST+++
Sbjct: 261 SIMKNLRRVHPISTMLK 277
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 282 bits (721), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 127/197 (64%), Positives = 168/197 (85%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+++ S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C +++VSNPVD
Sbjct: 83 DYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNPVD 142
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WKLSG PK+RVIGSG NLDS RFR L+ +KLG+ P S +G+I+GEHGDSSV VW
Sbjct: 143 ILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDSSVAVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV L+++NP +GT+ D+E + ++H VV SAYE+I+LKGYT+WAIGLS+A L
Sbjct: 203 SGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIE 262
Query: 200 TLLNNTNKIHAISTLIQ 216
++L N ++IH +ST++Q
Sbjct: 263 SMLKNLSRIHPVSTMVQ 279
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 263 bits (671), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +L+VSNPVD
Sbjct: 83 DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVD 142
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+LTYV+WKLSG P +R+IGSG NLDS RFR L+ ++LG+ S +G++IGEHGDS VW
Sbjct: 143 VLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG+NVA + L +P GT D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 203 SGMNVASIKL---HPLDGTNKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 259
Query: 200 TLLNNTNKIHAISTLIQ 216
T++ N ++H +ST+++
Sbjct: 260 TIMKNLCRVHPVSTMVK 276
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 263 bits (671), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 118/197 (59%), Positives = 160/197 (81%), Gaps = 3/197 (1%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +L+VSNPVD
Sbjct: 82 DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILVVSNPVD 141
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+LTYV+WKLSG P +R+IGSG NLDS RFR L+ ++LG+ S +G++IGEHGDS VW
Sbjct: 142 VLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVW 201
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG+NVA + L +P GT D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 202 SGMNVASIKL---HPLDGTNKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 258
Query: 200 TLLNNTNKIHAISTLIQ 216
T++ N ++H +ST+++
Sbjct: 259 TIMKNLCRVHPVSTMVK 275
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 246 bits (628), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 106/197 (53%), Positives = 152/197 (77%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y +S S++VI+TAG R G++RL L++RNV I K I+P +++ SP C +++V+NPVD
Sbjct: 81 DYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV WK+SGFP RVIGSG NLDS RFR L+ +KLG++P S +G+++GEHGDSSVP+W
Sbjct: 141 ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV L+ +NPAIGT+ + + + +H VV YE++ +KGYTSWAIGLS+ L
Sbjct: 201 SGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLAR 260
Query: 200 TLLNNTNKIHAISTLIQ 216
++L N ++H ++TL++
Sbjct: 261 SILKNLKRVHPVTTLVK 277
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 98/214 (45%), Positives = 133/214 (62%), Gaps = 38/214 (17%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +
Sbjct: 83 DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT 142
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
WKLSG P +R+IGSG NLDS RFR L+ ++LG+ V G++IG+HGDS VW
Sbjct: 143 DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL------- 192
SG+ A KLH DVV+SAYE+I+LKGYTSWAIGL
Sbjct: 203 SGMWDA---------------------KLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241
Query: 193 ----------SIASLTYTLLNNTNKIHAISTLIQ 216
S+A L T++ + ++H +ST+++
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVK 275
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 125/199 (62%), Gaps = 7/199 (3%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + + IV + AG Q+ GE+RL LVE+N+ IFKGI+ ++ L+ +NPVDI
Sbjct: 68 YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDI 127
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
LTY +WK SG PK RVIGSGT LDS RFR +L++ G +P++V+ IIGEHGD+ +PVWS
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHGDTELPVWS 187
Query: 141 GVNVAGV---NLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
NV GV L E N A EE ++ DV N+AY II KG T + + +S+A +
Sbjct: 188 HANVGGVPVSELVEKNDAY----KQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI 243
Query: 198 TYTLLNNTNKIHAISTLIQ 216
T +L+N N I +ST +
Sbjct: 244 TKAILHNENSILTVSTYLD 262
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 83/195 (42%), Positives = 136/195 (69%), Gaps = 1/195 (0%)
Query: 23 LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT 82
+ + +V++TAG RQ+ G+SRL LV VNI K I+PN+VK +P ++++NPVDI T
Sbjct: 72 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIAT 131
Query: 83 YVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGV 142
+V+ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W
Sbjct: 132 HVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESA 191
Query: 143 NVAGVNLREVNPAIGTEG-DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTL 201
+ GV + + P G + D ++ ++H +V N+AY+II KG T++AIG+S + +
Sbjct: 192 TIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAV 251
Query: 202 LNNTNKIHAISTLIQ 216
L++TN+I +S++++
Sbjct: 252 LHDTNRILPVSSMLK 266
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/199 (45%), Positives = 124/199 (62%), Gaps = 7/199 (3%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + + IV + AG Q+ GE+RL LVE+N+ IFKGI+ ++ L+ +NPVDI
Sbjct: 68 YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDI 127
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
LTY +WK SG PK RVIGSGT LDS RFR +L++ G +P++V IIGEHGD+ +PVWS
Sbjct: 128 LTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDTELPVWS 187
Query: 141 GVNVAGV---NLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
NV GV L E N A EE ++ DV N+AY II KG T + + +S+A +
Sbjct: 188 HANVGGVPVSELVEKNDAY----KQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSLARI 243
Query: 198 TYTLLNNTNKIHAISTLIQ 216
T +L+N N I +ST +
Sbjct: 244 TKAILHNENSILTVSTYLD 262
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 179 bits (453), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 125/195 (64%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y EG+R V++ AGV QR GE+RL L++RN +F ++P +++ +P+ LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++T V+++LSG P RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S V GV L E A G E+ ++ V +AY II KG T + IG +A L
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
+L + ++ +S
Sbjct: 241 AILTDEKGVYTVSAF 255
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 125/195 (64%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y EG+R V++ AGV QR GE+RL L++RN +F ++P +++ +P+ LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++T V+++LSG P RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S V GV L E A G E+ ++ V +AY II KG T + IG +A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
+L + ++ +S
Sbjct: 241 AILTDEKGVYTVSAF 255
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 124/195 (63%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y EG+R V++ AGV QR GE+RL L++RN +F ++P +++ +P+ LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++T V++ LSG P RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S V GV L E A G E+ ++ V +AY II KG T + IG +A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
+L + ++ +S
Sbjct: 241 AILTDEKGVYTVSAF 255
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 82/195 (42%), Positives = 124/195 (63%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y EG+R V++ AGV QR GE+RL L++RN +F ++P +++ +P+ LL+ +NPVD
Sbjct: 61 SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+ T V+++LSG P RV+GSGT LD+ RFR LLA+ L ++P+SV+ +++GEHGDS V VW
Sbjct: 121 VXTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S V GV L E A G E+ ++ V +AY II KG T + IG +A L
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 200 TLLNNTNKIHAISTL 214
+L + ++ +S
Sbjct: 241 AILTDEKGVYTVSAF 255
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 128/199 (64%), Gaps = 7/199 (3%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y+ ++ + +V++TAG Q+ GE+RL LV +N+ I K I+ IV L+ +NPVDI
Sbjct: 71 YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI 130
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
LTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SV+ +I+GEHGD+ PVWS
Sbjct: 131 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTEFPVWS 190
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
N+ GV + E +P I ++ K+ DV N AYEII+LKG T + I ++A +
Sbjct: 191 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRNKAYEIIKLKGATFYGIATALARI 246
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+ +LN+ N + +S +
Sbjct: 247 SKAILNDENAVLPLSVYMD 265
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y+ ++ + +V++TAG Q+ GE+RL LV +N+ I K I+ IV L+ +NPVDI
Sbjct: 71 YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDI 130
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
LTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SV+ +I+GEHGD+ PVWS
Sbjct: 131 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWS 190
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
N+ GV + E +P I ++ K+ DV ++AYEII+LKG T + I ++A +
Sbjct: 191 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI 246
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+ +LN+ N + +S +
Sbjct: 247 SKAILNDENAVLPLSVYMD 265
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 172 bits (437), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/199 (41%), Positives = 129/199 (64%), Gaps = 7/199 (3%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y+ ++ + +V++TAG ++ GE+RL LV +N+ I K I+ IV L+ +NPVDI
Sbjct: 70 YSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVDI 129
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
LTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SV+ +I+GEHGD+ PVWS
Sbjct: 130 LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWS 189
Query: 141 GVNVAGVNLRE---VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASL 197
N+ GV + E +P I ++ K+ DV ++AYEII+LKG T + I ++A +
Sbjct: 190 HANIGGVTIAEWVKAHPEIK----EDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARI 245
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+ +LN+ N + +S +
Sbjct: 246 SKAILNDENAVLPLSVYMD 264
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 130/206 (63%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
F G L +Y+ + +++VTAG ++ GE+RL L ++NV I K + NI+KY
Sbjct: 58 FMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 70 TLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129
+L+VSNPVDI+TY+ K SG P +VIGSGT LDS+RFR LL++KLG+ ++V+G+IIG
Sbjct: 118 VILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 130 EHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA 189
EHGDS +P+WS ++AG N+ E E+ K+ DV + II+ KG T +
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYG 237
Query: 190 IGLSIASLTYTLLNNTNKIHAISTLI 215
I +SI ++ TLL N N I + T+I
Sbjct: 238 IAVSINTIVETLLKNQNTIRTVGTVI 263
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y + +V++ AG Q+ GE+RL LV++N+ IF+ I+ +++ Q L+ +NPVD
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTY +WK SG P RVIGSGT LD+ RFR LL + ++P++V+ +IIGEHGD+ +PVW
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S + + +R++ + G E ++ ++ +V ++AY+II KG T + I + +A +T
Sbjct: 188 SQAYIGVMPIRKLVESKGEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 200 TLLNNTNKIHAISTLIQ 216
+L+N N I +S +
Sbjct: 247 AILHNENAILTVSAYLD 263
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 126/197 (63%), Gaps = 1/197 (0%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y + +V++ AG Q+ GE+RL LV++N+ IF+ I+ +++ Q L+ +NPVD
Sbjct: 68 DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTY +WK SG P RVIGSGT LD+ RFR LL + ++P++V+ +IIGEHGD+ +PVW
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S + + +R++ + G E ++ ++ +V ++AY+II KG T + I + +A +T
Sbjct: 188 SQAYIGVMPIRKLVESKGEEA-QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 200 TLLNNTNKIHAISTLIQ 216
+L+N N I +S +
Sbjct: 247 AILHNENAILTVSAYLD 263
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 122/197 (61%), Gaps = 1/197 (0%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA +GS +VIV AGV Q+ GE+RL L+ RN + K I N+ KY+P +++V+NPVD
Sbjct: 61 DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+LTY K SG +V GSGT LD+ R R L+AQ G SP SV+ ++IGEHGDS VPVW
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SG + G+ L+ + + + D++ +AYEII KG T +AI L++A +
Sbjct: 181 SGAMIGGIPLQNMC-QVCQKCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 200 TLLNNTNKIHAISTLIQ 216
++ + ++ +S ++
Sbjct: 240 SIFFDEKRVLTLSVYLE 256
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 122/200 (61%), Gaps = 8/200 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
Y+ + +V++ AG RQ+ GE+RL LV +N+ IFK I+ ++ L+ +NPVD
Sbjct: 68 EYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD 127
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
IL Y +WK SG PK RVIGSGT LDS RFR+LL++ ++P SV IIGEHGD+ +PVW
Sbjct: 128 ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLR---EVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIAS 196
S N+AG L+ E P EG + ++ ++AY+II+ KG T + + + +A
Sbjct: 188 SHANIAGQPLKTLLEQRP----EGKA-QIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 197 LTYTLLNNTNKIHAISTLIQ 216
+T + N + + +S L++
Sbjct: 243 ITEAIFRNEDAVLTVSALLE 262
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/208 (39%), Positives = 118/208 (56%), Gaps = 2/208 (0%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
L D +F + Y+ + + +V++TAG Q+ GESRL LV +N+NI I+
Sbjct: 47 ALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVK 106
Query: 61 NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120
+V L+ +NPVDILTY +WK SGFPK RVIGSGT+LDS R RV L ++ + P
Sbjct: 107 PVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDP 166
Query: 121 ESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180
SV +I+GEHGDS +S + +R+V G D + KL V N AY+II
Sbjct: 167 RSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSDD--DLAKLEDGVRNKAYDII 224
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKI 208
LKG T + IG ++ ++ +L + N +
Sbjct: 225 NLKGATFYGIGTALMRISKAILRDENAV 252
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 121/200 (60%), Gaps = 8/200 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
Y+ + +V++ AG Q+ GE+RL LV +N+ IFK I+ ++ L+ +NPVD
Sbjct: 68 EYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD 127
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
IL Y +WK SG PK RVIGSGT LDS RFR+LL++ ++P SV IIGEHGD+ +PVW
Sbjct: 128 ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTELPVW 187
Query: 140 SGVNVAGVNLR---EVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIAS 196
S N+AG L+ E P EG + ++ ++AY+II+ KG T + + + +A
Sbjct: 188 SHANIAGQPLKTLLEQRP----EGKA-QIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 197 LTYTLLNNTNKIHAISTLIQ 216
+T + N + + +S L++
Sbjct: 243 ITEAIFRNEDAVLTVSALLE 262
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 113/187 (60%), Gaps = 2/187 (1%)
Query: 27 SRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW 86
+++VI+TAG Q+ GESRL L+E+N +IF+ ++P I + +P LL+ SNPVD+LT ++
Sbjct: 68 AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLAT 127
Query: 87 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAG 146
+L+ P VIGSGT LDS RFR L+AQ G+ +G+++GEHGDS V WS VAG
Sbjct: 128 QLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSAMVAG 185
Query: 147 VNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTN 206
+ + + A + + K+ N+A II K T + IG ++A +T +L +
Sbjct: 186 MPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITEAVLRDRR 245
Query: 207 KIHAIST 213
+ +S
Sbjct: 246 AVLTVSA 252
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 113/214 (52%), Gaps = 25/214 (11%)
Query: 4 TNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
T D F NV + + S S++VI T +S L +V+ NV++F+ ++P +
Sbjct: 55 TMDLEIFNLPNVEISKDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALG 113
Query: 64 KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
YS LL+ S PV+I+TYV+WKLS FP NRVIG G NLDS R + ++ L
Sbjct: 114 HYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGK 173
Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV---NSAYEII 180
++IGE G+ V WSG +E HT V N A E++
Sbjct: 174 EVWVIGEQGEDKVLTWSG---------------------QEEVVSHTSQVQLSNRAMELL 212
Query: 181 RLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTL 214
R+KG SW++GLS+A + +++NN K+H++S L
Sbjct: 213 RVKGQRSWSVGLSVADMVDSIVNNKKKVHSVSAL 246
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 9/197 (4%)
Query: 14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLI 73
N++ +YA + S +V++TAG+ ++ G SR LV N I K I +I K+SP +++
Sbjct: 66 NIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 74 VSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
++NPVD +TY +K +GFPK RVIG LD+ RFR +AQ+L LS + + GF++G HGD
Sbjct: 126 LTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGD 185
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS--WAIG 191
VP+ G+ L + P E E K EI+ L G S +A
Sbjct: 186 DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRK-------GGGEIVGLLGNGSAYYAPA 238
Query: 192 LSIASLTYTLLNNTNKI 208
S+ +T +L + ++
Sbjct: 239 ASLVEMTEAILKDQRRV 255
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S IVI+TAG+ ++ G +R L+ +N I K + NI+K+S +++VSNP+D
Sbjct: 63 DYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I+T+V+W SG PK RVIG LD+ RFR +A +LG+S + + ++G HGD+ VPV
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR--LKGYTSWAIGLSIASL 197
VAG+ + ++ PA E KL N EI+ +G +A S+ +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235
Query: 198 TYTLLNNTNKI 208
+++ + ++
Sbjct: 236 VESIVLDRKRV 246
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 109/191 (57%), Gaps = 9/191 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S IVI+TAG+ ++ G +R L+ +N I K + NI+K+S +++VSNP+D
Sbjct: 63 DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I+T+V+W SG PK RVIG LD+ RFR +A +LG+S + + ++G HGD+ VPV
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIR--LKGYTSWAIGLSIASL 197
VAG+ + ++ PA E KL N EI+ +G +A S+ +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235
Query: 198 TYTLLNNTNKI 208
+++ + ++
Sbjct: 236 VESIVLDRKRV 246
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 110/202 (54%), Gaps = 16/202 (7%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
N + + S +VI+T+GV ++EG SR+ L + N I I + + +++NPVD
Sbjct: 68 NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD 126
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TY + S F +N+V G GT+LDS+RF+V +A+ G+ + V IIGEHGDS VP+
Sbjct: 127 VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLH-----TDVVNSAYEIIRLKGYTSWAIGLSI 194
S ++ G+ +++ E F +L DV +IIRLKG + + +I
Sbjct: 187 SATSIGGIPIQKF----------ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAI 236
Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
++ ++NN ++ +S +
Sbjct: 237 LNVVRCIVNNEKRLLTLSAYVD 258
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 106/197 (53%), Gaps = 17/197 (8%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+L +GS I++VTAG+ ++ G +RL L +N I K I IV+ +P+ +L+V+NP+D
Sbjct: 63 DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TY+ WK SG P+N V G G LDS R + L + + IIGEHGDS
Sbjct: 123 VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--IIGEHGDSMFVAK 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S + G EV+ + + DV A E+I+ KG T + ++I +
Sbjct: 181 SLADFDG----EVD-----------WEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVK 225
Query: 200 TLLNNTNKIHAISTLIQ 216
++ +T +I S ++Q
Sbjct: 226 AVVEDTGEIIPTSMILQ 242
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD+
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
V V G +P GD +E +L D+ SA ++I KG T W +A +
Sbjct: 185 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
+L++T ++
Sbjct: 236 ILHDTGRV 243
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 9/188 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD+
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
V+V G +P GD +E +L D+ SA ++I KG T W +A +
Sbjct: 185 KVSVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
+L++T ++
Sbjct: 236 ILHDTGEV 243
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 86/133 (64%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S IV++TAG+ ++ G +R L+ N I + + I+++S +++VSNP+D
Sbjct: 63 DYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I+T+V+W+ SG PK RVIG LDS RFR +A +LG+S + V ++G HGD+ VPV
Sbjct: 123 IMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREV 152
VAG+ + ++
Sbjct: 183 KYTTVAGIPVADL 195
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 106/188 (56%), Gaps = 9/188 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD+
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 125
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 185
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
V+V G +P GD +E +L D+ SA ++I KG T W +A +
Sbjct: 186 KVSVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 236
Query: 201 LLNNTNKI 208
+L++T ++
Sbjct: 237 ILHDTGEV 244
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD+
Sbjct: 65 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 124
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S
Sbjct: 125 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 184
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
V V G +P GD +E +L D+ SA ++I KG T W +A +
Sbjct: 185 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 235
Query: 201 LLNNTNKI 208
+L++T ++
Sbjct: 236 ILHDTGEV 243
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 109 bits (273), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD+
Sbjct: 66 YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL 125
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S
Sbjct: 126 LNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFS 185
Query: 141 GVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYT 200
V V G +P GD +E +L D+ SA ++I KG T W +A +
Sbjct: 186 KVRVDG-----TDPEFS--GDEKE--QLLGDLQESAMDVIERKGATEWGPARGVAHMVEA 236
Query: 201 LLNNTNKI 208
+L++T ++
Sbjct: 237 ILHDTGEV 244
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 105/198 (53%), Gaps = 8/198 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y GS IV+VTAG+ ++ G +R L+E N N + I Y+ ++I +NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TYV +K +GFP+ RVIG LDS R ++QKLG+S +SV ++G HG PV
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS-WAIGLSIASLT 198
+V GV L + EE ++ ++ VN+ +I L+GY+S + +
Sbjct: 181 RLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 199 YTLLNNTNKIHAISTLIQ 216
+ ++ +I+ S +Q
Sbjct: 234 EAIKRDSKRIYPYSLYLQ 251
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 81/128 (63%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y +E S + I+TAG+ + G SR L+ +N I G+ V+ SP T+++V+NP+D
Sbjct: 63 DYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TYV+++ SGFP NRV+G LD+ RFR +A++L +S V ++G HGD+ VP+
Sbjct: 123 VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPLP 182
Query: 140 SGVNVAGV 147
V G+
Sbjct: 183 RYTTVGGI 190
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 5/146 (3%)
Query: 7 HSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS 66
+ F G N +YA EG+ +VIVTAGV ++ G SR L+ N+ + + + I KY+
Sbjct: 61 DAKFTGAN-----DYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA 115
Query: 67 PQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF 126
P+ ++ ++NP+D + + K SG P ++V+G LDS RFR L+++ +S E V F
Sbjct: 116 PEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVF 175
Query: 127 IIGEHGDSSVPVWSGVNVAGVNLREV 152
++G HGDS VP+ VAG+ L ++
Sbjct: 176 VLGGHGDSMVPLARYSTVAGIPLPDL 201
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 81/132 (61%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 64 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY++ ++SGFPK RVIG LD+ R+R +A + G+S E V ++G HGD VP+
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
++G+ + E
Sbjct: 184 RFSTISGIPVSE 195
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 81/132 (61%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 64 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY++ ++SGFPK RVIG LD+ R+R +A + G+S E V ++G HGD VP+
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
++G+ + E
Sbjct: 184 RFSCISGIPVSE 195
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 103 bits (257), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 81/132 (61%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 64 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY++ ++SGFPK RVIG LD+ R+R +A + G+S + V ++G HGD VP+
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
++G+ + E
Sbjct: 184 RFSTISGIPVSE 195
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 81/132 (61%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 64 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY++ ++SGFPK RVIG LD+ R+R +A + G+S + V ++G HGD VP+
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLRE 151
++G+ + E
Sbjct: 184 RFSTISGIPVSE 195
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSP 67
V+V + Y GS +VI+TAG+ + G+S R L+ N I + + + KY P
Sbjct: 63 VSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCP 122
Query: 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
+++V+NP+D + + SG PKN V G LDS RFR +A +L +SP + +
Sbjct: 123 LAFVIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 128 IGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYT 186
IG HGD +P+ V V G LRE + TE + ++ + EI+RL G
Sbjct: 183 IGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEA---KLAEIVERTKKAGGEIVRLLGQG 239
Query: 187 S--WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
S +A LS ++ L + ++ S Q
Sbjct: 240 SAYYAPALSAITMAQAFLKDEKRVLPCSVYCQ 271
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 11/212 (5%)
Query: 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSP 67
V+V + Y GS +VI+TAG+ + G+S R L+ N I + + + KY P
Sbjct: 63 VSVTSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCP 122
Query: 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
+++V+NP+D + + SG PKN V G LDS RFR +A +L +SP + +
Sbjct: 123 LAFVIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 128 IGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYT 186
IG HGD +P+ V V G LRE + TE + ++ + EI+RL G
Sbjct: 183 IGTHGDHMLPLARYVTVNGFPLREFIKKGKMTEA---KLAEIVERTKKAGGEIVRLLGQG 239
Query: 187 S--WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
S +A LS ++ L + ++ S Q
Sbjct: 240 SAYYAPALSAITMAQAFLKDEKRVLPCSVYCQ 271
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 105/197 (53%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
GS +VIVTAG + G+S RL L+ N I I +I K P +++V+NPVD+
Sbjct: 72 GSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 77/133 (57%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y E S +VIVTAGV ++ G SR L+ N+ + + + I P ++ ++NP+D
Sbjct: 67 DYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITNPLD 126
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I K SG P N+++G LDS RFR LA +L +S + V ++ G HGD+ VP+
Sbjct: 127 IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGHGDTXVPLT 186
Query: 140 SGVNVAGVNLREV 152
NVAGV+L ++
Sbjct: 187 KXSNVAGVSLEQL 199
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NY + S +VI+TAGV ++ +R L+ N I + N+ KY P ++ ++NP+D
Sbjct: 76 NYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD 135
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+ Y + SG P N+V G LDS RFR L++ LG+ P V ++G HGD +P+
Sbjct: 136 AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPLT 195
Query: 140 SGVNVAGVNLRE 151
S V + G+ L +
Sbjct: 196 SSVTIGGILLSD 207
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA GS +VI+TA + R + R L+ N I + + KY P ++ ++NP+D
Sbjct: 66 DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++ K+SG P N+V G LDS RFR +AQ G++ V +IG HGD VP
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185
Query: 140 SGVNVAGVNL 149
S V+V GV L
Sbjct: 186 SSVSVGGVPL 195
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 71/130 (54%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA GS +VI+TA + R + R L+ N I + + KY P ++ ++NP+D
Sbjct: 66 DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++ K+SG P N+V G LDS RFR +AQ G++ V +IG HGD VP
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185
Query: 140 SGVNVAGVNL 149
S V+V GV L
Sbjct: 186 SSVSVGGVPL 195
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14 NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
NV R Y A G+ VIVTAG+ + G+ SR L+ N I + I NI KY
Sbjct: 63 NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 122
Query: 66 SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
P+ +++V+NP+D + V + SG P N + G LDS RFR +A L +SP V
Sbjct: 123 CPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 182
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+IG HGD VP+ + V G +++ + + TE EE + HT V S EI+R G
Sbjct: 183 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 239
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14 NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
NV R Y A G+ VIVTAG+ + G+ SR L+ N I + I NI KY
Sbjct: 61 NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 120
Query: 66 SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
P+ +++V+NP+D + V + SG P N + G LDS RFR +A L +SP V
Sbjct: 121 CPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 180
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+IG HGD VP+ + V G +++ + + TE EE + HT V S EI+R G
Sbjct: 181 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 237
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
GS +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD+
Sbjct: 72 GSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 14 NVLTRLNY---ALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKY 65
NV R Y A G+ VIVTAG+ + G+ SR L+ N I + I NI KY
Sbjct: 63 NVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY 122
Query: 66 SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
P+ +++V+NP+D + V + SG P N + G LDS RFR +A L +SP V
Sbjct: 123 CPKTFIIVVTNPLDCMVKVMXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQA 182
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+IG HGD VP+ + V G +++ + + TE EE + HT V S EI+R G
Sbjct: 183 TVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAE-HTKV--SGGEIVRFLG 239
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
G+ +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD+
Sbjct: 71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 130
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 190
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 191 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 247
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 248 SYLKDLKKVLICSTLLE 264
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
G+ +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD+
Sbjct: 71 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 130
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 131 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 190
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 191 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 247
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 248 SYLKDLKKVLICSTLLE 264
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
G+ +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD+
Sbjct: 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHASPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 106/203 (52%), Gaps = 9/203 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
+Y +G+ +VIVTAG + G+S R L+ N I I +I P +++V
Sbjct: 65 SYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVV 124
Query: 75 SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
+NPVD++ + ++ SG PKN++IG G LD+ R + ++QKL + P V I+G HG+
Sbjct: 125 TNPVDVMVQLLFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGNK 184
Query: 135 SVPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLS 193
V + + V G+ L+E +N T+ EE + VN+A EI+ L A +
Sbjct: 185 MVLLKRYITVGGIPLQEFINNKKITD---EEVEGIFDRTVNTALEIVNLLASPYVAPAAA 241
Query: 194 IASLTYTLLNNTNKIHAISTLIQ 216
I + + L + K+ STL++
Sbjct: 242 IIEMAESYLKDIKKVLVCSTLLE 264
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 26 GSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
G+ +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD+
Sbjct: 72 GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV 131
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWS 140
+ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+ V +
Sbjct: 132 MVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKR 191
Query: 141 GVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
+ V G+ L+E +N + ++ + E + VN+A EI+ L A +I +
Sbjct: 192 YITVGGIPLQEFINNKLISDAELEA---IFDRTVNTALEIVNLHAAPYVAPAAAIIEMAE 248
Query: 200 TLLNNTNKIHAISTLIQ 216
+ L + K+ STL++
Sbjct: 249 SYLKDLKKVLICSTLLE 265
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 103/202 (50%), Gaps = 9/202 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
Y + + +VIVTAG + G+S R L+ N I I +I P +++V+
Sbjct: 67 YDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIVVT 126
Query: 76 NPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
NPVD++ + + SG PKN+++G G LD+ R + ++QKL + P V I+G HG+
Sbjct: 127 NPVDVMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKM 186
Query: 136 VPVWSGVNVAGVNLRE-VNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
V + + V G+ L+E +N T+ +E + +N+A EI+ L A +I
Sbjct: 187 VLLKRYITVGGIPLQEFINNKKITD---QELDAIFDRTINTALEIVNLHASPYVAPAAAI 243
Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
+ + + + K+ STL++
Sbjct: 244 IEMAESYIRDLRKVLICSTLLE 265
>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|B Chain B, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|C Chain C, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
pdb|1HYH|D Chain D, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase
From Lactobacillus Confusus At 2.2 Angstroms
Resolution-an Example Of Strong Asymmetry Between
Subunits
Length = 309
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 43 SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTN 102
R + ++ ++ + + N+ + L+++SNPVD++T + ++GFP ++VIG+GT
Sbjct: 90 DRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTL 149
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
LD+ R + + + L P SV G+ +GEHG+S WS V V G + + A GD
Sbjct: 150 LDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADA----GDI 205
Query: 163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTN 206
+ + + + ++ KGYTS+ + S + ++ + +
Sbjct: 206 -DLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAH 248
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 10/187 (5%)
Query: 7 HSSFKGVNVL--TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
H F+G+N+ + + AL++ ++ ++ + G ++EG +R L++ N I + +I
Sbjct: 56 HCGFEGLNLTFTSDIKEALTD-AKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKS 114
Query: 65 YSPQCT-LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
Y P C ++I+ NP DI V+ SG ++V + LDS R + LA+ G+ V
Sbjct: 115 YCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVT-TLAGLDSTRLQSELAKHFGIKQSLV 173
Query: 124 YGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT-EEFGKLHTDVVNSAYEIIR 181
G HG+ S V G L ++ IGT+ T E++ +L VV II+
Sbjct: 174 TNTRTYGGHGEQMAVFASTAKVNGTPLTDL---IGTDKLTNEQWAELKQRVVKGGANIIK 230
Query: 182 LKGYTSW 188
L+G +S+
Sbjct: 231 LRGRSSF 237
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 22/186 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
EG+ +V+++AGVR++ G R L N I K ++ + K P+ + I++NPV+ I
Sbjct: 68 EGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + KN++ G T LD +R +A+ G P V +IG H G + +P+
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
S V GV+ E +E L + N+ E++ K G + ++G + A
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
+L+
Sbjct: 234 FGLSLV 239
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 22/186 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
EG+ +V+++AGV ++ G R L N I K ++ + K P+ + I++NPV+ I
Sbjct: 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + KN++ G T LD +R +A+ G P V +IG H G + +P+
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
S V GV+ E +E L + N+ E++ K G + ++G + A
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
+L+
Sbjct: 234 FGLSLV 239
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 22/186 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
EG+ +V+++AGV ++ G R L N I K ++ + K P+ + I++NPV+ I
Sbjct: 68 EGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAI 127
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + KN++ G T LD + +A+ G P V +IG H G + +P+
Sbjct: 128 AAEVLKKAGVYDKNKLFGV-TTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
S V GV+ E +E L + N+ E++ K G + ++G + A
Sbjct: 187 S--QVPGVSFTE-----------QEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAAR 233
Query: 197 LTYTLL 202
+L+
Sbjct: 234 FGLSLV 239
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77
+L AL+ G ++IV AGV ++ G +R L + N I K + I K P+ + ++SNP
Sbjct: 69 QLEAALT-GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 127
Query: 78 VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
V+ I V K + R++G T LD +R +A+ LGL P V ++G H
Sbjct: 128 VNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-- 184
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK-GYTSWAIGL 192
+GV + + L +V P + EE L + N E++ K G S + +
Sbjct: 185 ------AGVTILPL-LSQVKPP--SSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235
Query: 193 SIASLTYT 200
+ A++ +
Sbjct: 236 AYAAVKFA 243
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77
+L AL+ G ++IV AGV ++ G +R L + N I K + I K P+ + ++SNP
Sbjct: 105 QLEAALT-GMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 163
Query: 78 VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
V+ I V K + R++G T LD +R +A+ LGL P V ++G H
Sbjct: 164 VNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-- 220
Query: 134 SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK-GYTSWAIGL 192
+GV + + L +V P + EE L + N E++ K G S + +
Sbjct: 221 ------AGVTILPL-LSQVKPP--SSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 271
Query: 193 SIASLTYT 200
+ A++ +
Sbjct: 272 AYAAVKFA 279
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
EG+ +V+++AGV ++ G R L N I K + I P + I++NPV+ I
Sbjct: 71 EGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNPVNTTVPI 130
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + K ++ G T LD +R +A+ G P V +IG H G + +P+
Sbjct: 131 AAEVLKKAGVYDKRKLFGV-TTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGVTILPLL 189
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
S V G E EE L + N+ E++ K
Sbjct: 190 SQVE-------------GVEFSDEEIAALTKRIQNAGTEVVEAK 220
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 84/190 (44%), Gaps = 21/190 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
+G +V++ AGV ++ G +R L N I + ++ P + I+SNPV+ I
Sbjct: 67 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPI 126
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + N++ G T LD +R +A+ GL P V +IG H G + +P+
Sbjct: 127 TAEVFKKHGVYNPNKIFGV-TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLI 185
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
S + P + D + L + + E+++ K G + ++ + A
Sbjct: 186 S----------QCTPKVDFPQD--QLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 233
Query: 197 LTYTLLNNTN 206
++L++ N
Sbjct: 234 FVFSLVDAMN 243
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD----I 80
+G +V++ AGV ++ G +R L N I + ++ P+ + +++NPV+ I
Sbjct: 95 KGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPI 154
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVW 139
V K + N++ G T LD +R +A+ GL P V +IG H G + +P+
Sbjct: 155 TAEVFKKHGVYNPNKIFGV-TTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLI 213
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIAS 196
S + P + D + L + + E+++ K G + ++ + A
Sbjct: 214 S----------QCTPKVDFPQD--QLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 261
Query: 197 LTYTLLNNTN 206
++L++ N
Sbjct: 262 FVFSLVDAMN 271
>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
pdb|4MDH|B Chain B, Refined Crystal Structure Of Cytoplasmic Malate
Dehydrogenase At 2.5-Angstroms Resolution
Length = 334
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 29 IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDILTYVSWK 87
+ I+ + +R+G R L++ NV IFK + KY+ + +++V NP + + K
Sbjct: 83 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK 142
Query: 88 LS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVA 145
+ PK T LD R + +A KLG++ + V II G H + P VN A
Sbjct: 143 SAPSIPKEN-FSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYP---DVNHA 198
Query: 146 GVNL--REVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
V L +EV + D+ G+ T V +I+ + +S
Sbjct: 199 KVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 242
>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
pdb|5MDH|B Chain B, Crystal Structure Of Ternary Complex Of Porcine
Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And
Tnad At 2.4 Angstroms Resolution
Length = 333
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)
Query: 29 IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDILTYVSWK 87
+ I+ + +R+G R L++ NV IFK + KY+ + +++V NP + + K
Sbjct: 82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK 141
Query: 88 LS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVA 145
+ PK T LD R + +A KLG++ + V II G H + P VN A
Sbjct: 142 SAPSIPKEN-FSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYP---DVNHA 197
Query: 146 GVNL--REVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
V L +EV + D+ G+ T V +I+ + +S
Sbjct: 198 KVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKARKLSS 241
>pdb|3FEF|A Chain A, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|B Chain B, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|C Chain C, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|D Chain D, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
Length = 450
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 50 RNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99
R V IF I I Y+P+ ++ +NP + T V +K+ FP + IG
Sbjct: 121 RAVPIFAEIARAIRDYAPESWVINYTNPXSVCTRVLYKV--FPGIKAIGC 168
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 53 NIFKGIIPNIVKYSPQ---CTLLIVSNPVDILTYVSWKLS--GFPK---NRVIGSGTNLD 104
+ II N +KYSP+ T I N + L Y+S K G PK +V +D
Sbjct: 46 QVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVD 105
Query: 105 SMRFRVLLAQKLGLS 119
R R L LGL+
Sbjct: 106 KARTRKLGGTGLGLA 120
>pdb|1QFW|L Chain L, Ternary Complex Of Human Chorionic Gonadotropin With Fv
Anti Alpha Subunit And Fv Anti Beta Subunit
Length = 114
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 37 RQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFPK 93
+Q+ G+ L+ R N+ GI + + NPV D+ TY + +P
Sbjct: 41 QQKPGQPPKLLIYRASNLESGIPARFSGTGSRTDFTLTINPVEADDVATYYCQQSDEYPY 100
Query: 94 NRVIGSGTNLDSMR 107
G GT L+ R
Sbjct: 101 MYTFGGGTKLEIKR 114
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query: 12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CT 70
G+ + A + ++V A R + G R L++ N IF + + + +
Sbjct: 67 GLEATDDPDVAFKDADYALLVGAAPR-KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125
Query: 71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-G 129
+L+V NP + +++K + R + T LD R + LA+K G + + + G
Sbjct: 126 VLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWG 185
Query: 130 EHGDSSVP 137
H + P
Sbjct: 186 NHSSTMFP 193
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 22 ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDI 80
A + ++V A R + G R L++ N IF + + + + +L+V NP +
Sbjct: 77 AFKDADYALLVGAAPR-KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT 135
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVP 137
+++K + R + T LD R + LA+K G + + + G H + P
Sbjct: 136 NALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFP 193
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 22 ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPVDI 80
A + ++V A R + G R L++ N IF + + + + +L+V NP +
Sbjct: 77 AFKDADYALLVGAAPR-KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT 135
Query: 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVP 137
+++K + R + T LD R + LA+K G + + + G H + P
Sbjct: 136 NALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFP 193
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 12 GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CT 70
G+ + A + ++V A R + G R L++ N IF + + + +
Sbjct: 67 GLEATDDPDVAFKDADYALLVGAAPR-KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125
Query: 71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 117
+L+V NP + +++K + R + T LD R + LA+K G
Sbjct: 126 VLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTG 172
>pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna
Polymerase B1 From The Archaeon Sulfolobus Solfataricus
Length = 847
Score = 26.9 bits (58), Expect = 7.8, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 149 LREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGY 185
++E+ +I + D +E + DVV +YE ++ KGY
Sbjct: 699 VKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGY 735
>pdb|3P7N|A Chain A, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
pdb|3P7N|B Chain B, Crystal Structure Of Light Activated Transcription Factor
El222 From Erythrobacter Litoralis
Length = 258
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 31 IVTAGVRQREGESRLSLVERNVNIFKGII 59
+V +G+R +E +RL L E+ V + +G++
Sbjct: 209 LVASGLRNKEVAARLGLSEKTVKMHRGLV 237
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With
Angiotensin Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVE 49
+LNY LS+G R+V+ G Q + LVE
Sbjct: 62 KLNYTLSQGHRVVLRGVGGSQPPDIDKTELVE 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,577,445
Number of Sequences: 62578
Number of extensions: 279231
Number of successful extensions: 796
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 671
Number of HSP's gapped (non-prelim): 96
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)