Query psy17689
Match_columns 216
No_of_seqs 165 out of 1302
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 20:23:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0039 Mdh Malate/lactate deh 100.0 3.9E-65 8.5E-70 447.0 22.2 211 2-216 43-256 (313)
2 KOG1495|consensus 100.0 8.5E-65 1.8E-69 430.6 22.0 214 3-216 61-278 (332)
3 cd05290 LDH_3 A subgroup of L- 100.0 1E-62 2.3E-67 434.0 21.6 213 2-216 42-258 (307)
4 TIGR01771 L-LDH-NAD L-lactate 100.0 1.9E-61 4.2E-66 424.7 21.0 214 2-216 39-253 (299)
5 cd05293 LDH_1 A subgroup of L- 100.0 4.3E-61 9.3E-66 424.6 21.5 215 2-216 46-261 (312)
6 PLN02602 lactate dehydrogenase 100.0 2.5E-60 5.5E-65 425.0 21.6 215 2-216 80-295 (350)
7 PLN00135 malate dehydrogenase 100.0 6.1E-60 1.3E-64 416.3 19.2 210 2-216 33-252 (309)
8 PRK00066 ldh L-lactate dehydro 100.0 2.5E-58 5.5E-63 407.5 21.1 214 2-216 49-262 (315)
9 TIGR01757 Malate-DH_plant mala 100.0 2E-58 4.4E-63 416.2 20.4 210 2-216 95-310 (387)
10 cd05291 HicDH_like L-2-hydroxy 100.0 4.9E-58 1.1E-62 404.0 21.0 212 3-216 44-256 (306)
11 TIGR01756 LDH_protist lactate 100.0 3.8E-58 8.2E-63 405.7 20.1 208 2-215 35-252 (313)
12 TIGR01759 MalateDH-SF1 malate 100.0 4.4E-58 9.5E-63 406.9 19.9 209 2-216 54-269 (323)
13 PLN00112 malate dehydrogenase 100.0 3.6E-58 7.9E-63 420.2 19.4 210 2-216 151-366 (444)
14 PRK05442 malate dehydrogenase; 100.0 6.6E-58 1.4E-62 406.2 20.5 209 2-216 55-270 (326)
15 cd00300 LDH_like L-lactate deh 100.0 3.5E-57 7.6E-62 397.8 21.9 210 2-216 41-251 (300)
16 cd05292 LDH_2 A subgroup of L- 100.0 6.7E-57 1.4E-61 397.3 21.2 203 14-216 55-257 (308)
17 cd00704 MDH Malate dehydrogena 100.0 2.1E-56 4.5E-61 396.4 20.8 210 2-216 51-269 (323)
18 TIGR01763 MalateDH_bact malate 100.0 3.6E-56 7.7E-61 392.3 21.7 197 13-216 56-254 (305)
19 TIGR01758 MDH_euk_cyt malate d 100.0 6.4E-56 1.4E-60 393.4 20.4 210 2-216 50-269 (324)
20 PTZ00082 L-lactate dehydrogena 100.0 3.7E-54 8.1E-59 381.8 23.3 202 13-216 61-269 (321)
21 cd01338 MDH_choloroplast_like 100.0 2E-54 4.3E-59 383.6 21.5 209 2-216 53-268 (322)
22 cd05294 LDH-like_MDH_nadp A la 100.0 4.4E-54 9.6E-59 379.6 22.4 199 13-216 59-257 (309)
23 cd01337 MDH_glyoxysomal_mitoch 100.0 2.6E-54 5.6E-59 380.7 20.8 196 2-212 42-252 (310)
24 PTZ00117 malate dehydrogenase; 100.0 1.4E-53 3E-58 377.9 23.3 202 13-216 60-263 (319)
25 TIGR01772 MDH_euk_gproteo mala 100.0 8E-54 1.7E-58 378.0 21.2 198 2-215 41-253 (312)
26 cd05295 MDH_like Malate dehydr 100.0 4.9E-53 1.1E-57 386.5 17.8 207 1-216 173-398 (452)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 2.1E-52 4.6E-57 371.1 19.5 209 2-216 53-272 (325)
28 cd01339 LDH-like_MDH L-lactate 100.0 1.6E-51 3.4E-56 361.5 22.8 197 13-216 53-251 (300)
29 PTZ00325 malate dehydrogenase; 100.0 1.4E-50 3E-55 358.5 21.8 187 13-215 59-260 (321)
30 PRK06223 malate dehydrogenase; 100.0 3.1E-50 6.7E-55 353.8 21.3 197 13-216 57-255 (307)
31 PRK05086 malate dehydrogenase; 100.0 3.2E-50 6.8E-55 355.5 21.5 183 18-215 60-254 (312)
32 PLN00106 malate dehydrogenase 100.0 1.4E-49 3.1E-54 352.3 22.0 198 2-214 60-272 (323)
33 cd00650 LDH_MDH_like NAD-depen 100.0 1.4E-42 3E-47 299.6 17.5 167 3-216 45-213 (263)
34 KOG1494|consensus 100.0 5.8E-38 1.3E-42 268.0 15.9 196 5-213 70-282 (345)
35 KOG1496|consensus 100.0 1.8E-37 4E-42 260.5 9.5 204 2-213 55-271 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 1.8E-31 3.9E-36 217.4 10.6 115 101-216 1-116 (174)
37 PF00056 Ldh_1_N: lactate/mala 99.9 1.1E-27 2.5E-32 189.2 6.9 97 2-98 44-141 (141)
38 cd05197 GH4_glycoside_hydrolas 99.9 6.2E-24 1.3E-28 194.8 12.7 132 12-151 59-212 (425)
39 PRK15076 alpha-galactosidase; 99.9 2E-23 4.3E-28 191.9 10.7 129 12-150 60-214 (431)
40 cd05296 GH4_P_beta_glucosidase 99.9 7.5E-23 1.6E-27 187.4 12.7 131 12-151 60-212 (419)
41 cd05298 GH4_GlvA_pagL_like Gly 99.8 5.4E-19 1.2E-23 162.7 17.9 132 12-151 59-213 (437)
42 cd05297 GH4_alpha_glucosidase_ 99.8 1.9E-19 4.1E-24 165.3 12.0 130 12-150 59-212 (423)
43 COG1486 CelF Alpha-galactosida 99.4 4.9E-13 1.1E-17 122.2 10.2 130 13-150 63-215 (442)
44 PF02056 Glyco_hydro_4: Family 99.4 1E-11 2.2E-16 102.1 11.6 104 11-118 57-183 (183)
45 COG1004 Ugd Predicted UDP-gluc 91.5 1 2.2E-05 41.5 8.0 68 13-86 62-132 (414)
46 TIGR00640 acid_CoA_mut_C methy 90.0 3.1 6.7E-05 32.3 8.7 66 24-105 51-118 (132)
47 PRK05808 3-hydroxybutyryl-CoA 89.0 0.99 2.1E-05 39.0 5.7 69 14-99 70-139 (282)
48 TIGR01915 npdG NADPH-dependent 85.8 6.2 0.00014 32.8 8.6 47 18-80 60-106 (219)
49 PRK06035 3-hydroxyacyl-CoA deh 78.0 6.3 0.00014 34.2 6.0 48 15-76 74-122 (291)
50 PF03721 UDPG_MGDP_dh_N: UDP-g 77.2 2.7 5.9E-05 34.4 3.3 72 13-90 62-140 (185)
51 PF08885 GSCFA: GSCFA family; 76.2 6.3 0.00014 34.1 5.4 60 23-82 98-181 (251)
52 cd02071 MM_CoA_mut_B12_BD meth 75.8 14 0.0003 27.9 6.7 66 24-105 48-115 (122)
53 PRK08293 3-hydroxybutyryl-CoA 75.7 7.9 0.00017 33.6 6.0 49 14-78 71-121 (287)
54 PF02310 B12-binding: B12 bind 75.2 28 0.00062 25.4 8.2 19 56-74 41-59 (121)
55 cd01836 FeeA_FeeB_like SGNH_hy 73.4 11 0.00025 29.8 6.0 50 25-77 66-115 (191)
56 cd01838 Isoamyl_acetate_hydrol 73.1 11 0.00025 29.6 5.9 50 26-78 63-117 (199)
57 PRK07530 3-hydroxybutyryl-CoA 72.7 11 0.00023 32.8 6.1 20 15-34 72-91 (292)
58 cd01833 XynB_like SGNH_hydrola 71.8 14 0.0003 28.3 6.0 48 25-76 39-87 (157)
59 PRK02261 methylaspartate mutas 71.1 35 0.00076 26.5 8.1 67 25-105 53-125 (137)
60 KOG2711|consensus 64.2 23 0.00049 32.3 6.3 75 12-104 90-175 (372)
61 TIGR01501 MthylAspMutase methy 63.7 55 0.0012 25.6 7.8 77 25-117 51-133 (134)
62 PF07685 GATase_3: CobB/CobQ-l 63.7 11 0.00025 29.7 4.0 44 20-67 1-44 (158)
63 PRK12921 2-dehydropantoate 2-r 63.2 26 0.00057 30.1 6.6 61 19-98 60-122 (305)
64 PF02737 3HCDH_N: 3-hydroxyacy 62.8 17 0.00036 29.5 4.9 45 14-72 66-111 (180)
65 cd01844 SGNH_hydrolase_like_6 62.4 17 0.00037 28.7 4.9 48 25-78 56-103 (177)
66 cd01827 sialate_O-acetylestera 61.6 30 0.00064 27.2 6.2 49 26-77 67-117 (188)
67 PLN02353 probable UDP-glucose 61.5 16 0.00035 34.4 5.2 68 14-83 65-136 (473)
68 PRK15098 beta-D-glucoside gluc 60.6 6.9 0.00015 39.1 2.7 55 24-80 499-557 (765)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 60.5 5.5 0.00012 31.4 1.7 46 14-75 56-103 (157)
70 PRK11889 flhF flagellar biosyn 59.9 44 0.00095 31.3 7.6 66 26-105 320-389 (436)
71 cd01841 NnaC_like NnaC (CMP-Ne 59.6 30 0.00065 26.9 5.8 50 25-77 50-99 (174)
72 PRK08229 2-dehydropantoate 2-r 59.3 40 0.00088 29.6 7.2 50 16-81 63-113 (341)
73 COG1250 FadB 3-hydroxyacyl-CoA 59.1 20 0.00043 32.0 5.1 88 13-117 69-175 (307)
74 PRK08130 putative aldolase; Va 59.0 1E+02 0.0022 25.5 9.6 103 20-139 47-165 (213)
75 cd01831 Endoglucanase_E_like E 58.9 31 0.00066 27.0 5.7 48 27-78 56-106 (169)
76 PRK07819 3-hydroxybutyryl-CoA 57.8 27 0.00059 30.4 5.7 69 14-99 72-142 (286)
77 cd01825 SGNH_hydrolase_peri1 S 57.1 39 0.00084 26.4 6.1 50 25-77 55-105 (189)
78 KOG2666|consensus 56.5 1.5E+02 0.0033 27.1 10.1 66 12-77 63-156 (481)
79 cd01828 sialate_O-acetylestera 56.0 37 0.00081 26.3 5.8 49 25-77 47-96 (169)
80 cd01820 PAF_acetylesterase_lik 55.9 33 0.00071 28.0 5.7 48 26-76 89-136 (214)
81 PLN02545 3-hydroxybutyryl-CoA 55.7 34 0.00074 29.6 6.0 20 15-34 72-91 (295)
82 PRK07066 3-hydroxybutyryl-CoA 55.6 35 0.00077 30.5 6.1 69 14-98 70-139 (321)
83 cd04502 SGNH_hydrolase_like_7 55.0 38 0.00082 26.3 5.7 47 26-76 50-97 (171)
84 COG1419 FlhF Flagellar GTP-bin 54.0 34 0.00074 31.8 5.8 69 24-105 279-350 (407)
85 TIGR00745 apbA_panE 2-dehydrop 53.9 45 0.00097 28.3 6.4 51 17-83 50-101 (293)
86 cd02072 Glm_B12_BD B12 binding 53.1 62 0.0013 25.1 6.4 67 25-105 49-121 (128)
87 cd01823 SEST_like SEST_like. A 52.6 51 0.0011 27.5 6.4 25 52-76 130-154 (259)
88 cd00762 NAD_bind_malic_enz NAD 52.5 21 0.00046 31.0 4.0 72 19-106 96-173 (254)
89 TIGR01777 yfcH conserved hypot 52.4 31 0.00067 28.9 5.1 47 22-68 53-103 (292)
90 COG2185 Sbm Methylmalonyl-CoA 52.4 53 0.0012 26.0 6.0 67 25-105 62-128 (143)
91 PRK06130 3-hydroxybutyryl-CoA 52.1 46 0.00099 28.9 6.3 20 15-34 67-87 (311)
92 TIGR02441 fa_ox_alpha_mit fatt 52.0 26 0.00057 34.9 5.2 89 13-118 401-508 (737)
93 TIGR02437 FadB fatty oxidation 51.3 37 0.00081 33.7 6.1 70 13-99 379-449 (714)
94 PRK06522 2-dehydropantoate 2-r 51.3 49 0.0011 28.3 6.2 50 18-83 58-108 (304)
95 TIGR03310 matur_ygfJ molybdenu 51.2 18 0.00039 28.5 3.3 52 28-79 1-52 (188)
96 TIGR02279 PaaC-3OHAcCoADH 3-hy 50.6 40 0.00087 32.0 6.0 21 14-34 72-92 (503)
97 cd02067 B12-binding B12 bindin 50.5 66 0.0014 23.7 6.1 60 25-99 49-109 (119)
98 PLN03080 Probable beta-xylosid 50.3 14 0.00031 37.0 3.0 55 24-80 485-544 (779)
99 PRK11730 fadB multifunctional 50.2 39 0.00086 33.5 6.1 70 13-99 379-449 (715)
100 PRK12439 NAD(P)H-dependent gly 49.2 49 0.0011 29.5 6.0 59 14-88 64-129 (341)
101 PRK08269 3-hydroxybutyryl-CoA 49.2 52 0.0011 29.2 6.2 61 22-99 75-136 (314)
102 TIGR02440 FadJ fatty oxidation 48.9 42 0.00092 33.2 6.0 70 13-99 371-441 (699)
103 COG0240 GpsA Glycerol-3-phosph 48.9 53 0.0012 29.6 6.1 62 12-89 56-124 (329)
104 cd05312 NAD_bind_1_malic_enz N 48.7 25 0.00054 31.0 3.9 71 19-105 95-171 (279)
105 TIGR03376 glycerol3P_DH glycer 48.3 41 0.00088 30.4 5.4 48 12-75 67-116 (342)
106 PF00185 OTCace: Aspartate/orn 47.8 25 0.00053 27.9 3.5 64 13-79 59-123 (158)
107 PRK12723 flagellar biosynthesi 47.7 77 0.0017 29.2 7.2 70 23-105 251-324 (388)
108 PRK06731 flhF flagellar biosyn 47.1 1E+02 0.0022 26.8 7.5 66 26-105 154-223 (270)
109 COG2085 Predicted dinucleotide 46.7 88 0.0019 26.4 6.8 49 15-79 49-97 (211)
110 PRK09426 methylmalonyl-CoA mut 46.6 1.2E+02 0.0026 30.3 8.7 65 25-105 632-698 (714)
111 cd04121 Rab40 Rab40 subfamily. 46.0 35 0.00076 27.6 4.3 47 24-80 76-122 (189)
112 PF09370 TIM-br_sig_trns: TIM- 44.8 67 0.0015 28.1 5.9 66 24-89 168-238 (268)
113 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 44.7 52 0.0011 26.4 5.1 48 24-80 74-121 (182)
114 COG0426 FpaA Uncharacterized f 44.5 1.2E+02 0.0027 28.0 7.9 78 50-132 259-340 (388)
115 PRK11154 fadJ multifunctional 44.5 56 0.0012 32.4 6.1 91 13-120 376-485 (708)
116 cd01832 SGNH_hydrolase_like_1 44.2 62 0.0013 25.2 5.4 48 25-77 66-114 (185)
117 cd04506 SGNH_hydrolase_YpmR_li 43.8 51 0.0011 26.3 4.9 52 24-75 66-128 (204)
118 PRK06129 3-hydroxyacyl-CoA deh 43.3 76 0.0017 27.7 6.3 20 15-34 70-90 (308)
119 PRK10867 signal recognition pa 42.9 1.2E+02 0.0026 28.4 7.7 92 25-133 182-280 (433)
120 PF02698 DUF218: DUF218 domain 42.7 1.4E+02 0.0031 22.8 7.2 40 78-118 56-98 (155)
121 PF01073 3Beta_HSD: 3-beta hyd 42.5 80 0.0017 27.3 6.2 45 24-68 64-109 (280)
122 cd01839 SGNH_arylesterase_like 42.4 64 0.0014 25.9 5.3 50 25-77 78-134 (208)
123 cd04131 Rnd Rnd subfamily. Th 42.2 58 0.0013 25.9 5.0 49 24-81 70-118 (178)
124 PRK08268 3-hydroxy-acyl-CoA de 42.0 66 0.0014 30.6 6.0 20 15-34 75-94 (507)
125 PRK09260 3-hydroxybutyryl-CoA 41.2 82 0.0018 27.1 6.1 21 15-35 69-90 (288)
126 PF10552 ORF6C: ORF6C domain; 41.0 27 0.00058 26.3 2.6 55 159-213 32-86 (116)
127 TIGR03026 NDP-sugDHase nucleot 40.8 52 0.0011 30.1 5.0 55 15-75 64-120 (411)
128 PF00448 SRP54: SRP54-type pro 40.5 1.4E+02 0.0031 24.4 7.2 68 25-105 82-152 (196)
129 PRK02628 nadE NAD synthetase; 40.4 1.3E+02 0.0028 29.7 7.9 72 53-125 347-429 (679)
130 PF13458 Peripla_BP_6: Peripla 40.3 1.1E+02 0.0025 26.0 6.9 47 58-105 182-229 (343)
131 PTZ00345 glycerol-3-phosphate 39.7 60 0.0013 29.6 5.1 23 12-34 78-101 (365)
132 TIGR01454 AHBA_synth_RP 3-amin 39.7 1.7E+02 0.0037 23.3 7.5 75 55-131 77-157 (205)
133 PRK09140 2-dehydro-3-deoxy-6-p 39.6 1.4E+02 0.003 24.8 7.0 60 51-113 20-81 (206)
134 PF00919 UPF0004: Uncharacteri 38.3 1.2E+02 0.0026 22.1 5.7 42 24-75 34-76 (98)
135 COG1488 PncB Nicotinic acid ph 38.1 81 0.0018 29.2 5.8 49 54-103 277-326 (405)
136 TIGR01181 dTDP_gluc_dehyt dTDP 37.1 2.1E+02 0.0046 24.0 8.0 52 24-75 69-124 (317)
137 KOG0781|consensus 37.0 50 0.0011 31.6 4.2 95 24-151 464-563 (587)
138 PF13460 NAD_binding_10: NADH( 37.0 73 0.0016 24.8 4.7 40 24-75 58-97 (183)
139 PF00071 Ras: Ras family; Int 36.9 52 0.0011 24.9 3.8 49 24-82 69-118 (162)
140 cd01822 Lysophospholipase_L1_l 36.7 1E+02 0.0022 23.7 5.5 44 26-75 64-108 (177)
141 KOG0093|consensus 36.6 80 0.0017 25.6 4.7 50 51-118 108-158 (193)
142 PRK01964 4-oxalocrotonate taut 36.3 51 0.0011 21.6 3.2 40 106-152 22-61 (64)
143 TIGR02304 aden_form_hyp probab 35.5 84 0.0018 29.2 5.5 68 53-124 174-244 (430)
144 COG1151 6Fe-6S prismane cluste 35.4 51 0.0011 31.9 4.0 36 86-123 456-494 (576)
145 PF02310 B12-binding: B12 bind 34.9 1.7E+02 0.0038 21.1 8.0 72 57-132 19-91 (121)
146 PRK09243 nicotinate phosphorib 34.5 1E+02 0.0022 29.1 5.9 53 52-105 269-321 (464)
147 TIGR02622 CDP_4_6_dhtase CDP-g 34.3 1.5E+02 0.0033 25.9 6.8 50 27-76 76-127 (349)
148 PF02684 LpxB: Lipid-A-disacch 34.3 3.5E+02 0.0075 24.8 9.2 40 43-82 193-232 (373)
149 PF01915 Glyco_hydro_3_C: Glyc 34.1 19 0.0004 30.0 0.9 57 24-82 83-148 (227)
150 cd04133 Rop_like Rop subfamily 33.4 97 0.0021 24.7 5.0 49 24-81 70-118 (176)
151 PRK12726 flagellar biosynthesi 32.8 1.3E+02 0.0029 27.9 6.2 67 25-105 284-354 (407)
152 TIGR03160 cobT_DBIPRT nicotina 32.7 2.3E+02 0.0049 25.6 7.6 71 39-110 127-199 (333)
153 COG0677 WecC UDP-N-acetyl-D-ma 32.6 68 0.0015 29.9 4.2 46 13-65 71-117 (436)
154 PRK11150 rfaD ADP-L-glycero-D- 32.6 1.6E+02 0.0034 25.1 6.5 48 26-75 68-115 (308)
155 PF03808 Glyco_tran_WecB: Glyc 32.2 1.3E+02 0.0029 23.9 5.6 30 48-77 54-83 (172)
156 TIGR02197 heptose_epim ADP-L-g 32.2 1.6E+02 0.0035 24.9 6.4 50 25-76 65-114 (314)
157 PF02540 NAD_synthase: NAD syn 32.2 1.9E+02 0.0041 24.6 6.7 63 55-120 6-76 (242)
158 COG1223 Predicted ATPase (AAA+ 32.0 13 0.00028 33.0 -0.4 41 89-133 147-194 (368)
159 PRK15182 Vi polysaccharide bio 31.9 91 0.002 28.9 5.1 26 15-40 65-90 (425)
160 cd01834 SGNH_hydrolase_like_2 31.8 94 0.002 24.1 4.6 49 25-76 60-112 (191)
161 PF02153 PDH: Prephenate dehyd 31.7 1.3E+02 0.0028 25.6 5.7 13 21-33 40-52 (258)
162 PRK15181 Vi polysaccharide bio 31.7 3.4E+02 0.0074 23.8 8.6 105 24-131 88-199 (348)
163 cd00229 SGNH_hydrolase SGNH_hy 31.6 1.4E+02 0.003 22.0 5.3 54 23-77 62-115 (187)
164 PF03807 F420_oxidored: NADP o 31.3 20 0.00044 25.2 0.5 42 20-77 54-96 (96)
165 PF02882 THF_DHG_CYH_C: Tetrah 30.8 28 0.00061 28.0 1.3 19 19-37 71-90 (160)
166 cd01570 NAPRTase_A Nicotinate 30.6 1.1E+02 0.0024 27.3 5.3 61 65-131 248-310 (327)
167 cd01401 PncB_like Nicotinate p 30.4 1.3E+02 0.0028 27.7 5.7 46 67-112 274-322 (377)
168 PF12804 NTP_transf_3: MobA-li 30.4 17 0.00036 28.0 -0.1 48 29-76 1-48 (160)
169 cd02068 radical_SAM_B12_BD B12 30.1 1.7E+02 0.0037 21.7 5.6 39 25-76 38-76 (127)
170 PTZ00323 NAD+ synthase; Provis 29.8 2.7E+02 0.0059 24.6 7.5 84 39-125 21-113 (294)
171 cd01821 Rhamnogalacturan_acety 29.7 2.8E+02 0.0061 21.9 9.0 87 25-126 64-155 (198)
172 PRK00105 cobT nicotinate-nucle 29.5 2.6E+02 0.0057 25.2 7.4 72 38-110 126-199 (335)
173 PF14552 Tautomerase_2: Tautom 29.3 80 0.0017 22.4 3.4 30 108-141 52-81 (82)
174 COG3958 Transketolase, C-termi 29.3 1.8E+02 0.004 26.0 6.2 43 24-80 190-234 (312)
175 PF02492 cobW: CobW/HypB/UreG, 29.2 60 0.0013 25.9 3.1 38 24-72 140-177 (178)
176 cd07359 PCA_45_Doxase_B_like S 29.1 1.9E+02 0.004 24.8 6.3 36 40-75 18-53 (271)
177 cd01873 RhoBTB RhoBTB subfamil 29.0 1.1E+02 0.0025 24.7 4.7 49 24-81 85-133 (195)
178 PRK06015 keto-hydroxyglutarate 28.9 3.1E+02 0.0067 22.8 7.3 58 51-112 14-73 (201)
179 COG0800 Eda 2-keto-3-deoxy-6-p 28.9 2.8E+02 0.006 23.5 7.0 58 51-112 23-82 (211)
180 TIGR01182 eda Entner-Doudoroff 28.6 3.1E+02 0.0068 22.8 7.3 77 51-139 18-96 (204)
181 PF02541 Ppx-GppA: Ppx/GppA ph 28.6 3.7E+02 0.0081 22.9 8.3 94 44-143 33-133 (285)
182 PRK13364 protocatechuate 4,5-d 28.6 63 0.0014 28.3 3.3 29 52-81 34-62 (278)
183 TIGR03202 pucB xanthine dehydr 28.3 70 0.0015 25.4 3.3 49 29-77 3-51 (190)
184 PRK00745 4-oxalocrotonate taut 28.3 1.1E+02 0.0023 19.7 3.7 37 107-150 23-59 (62)
185 cd07367 CarBb CarBb is the B s 28.2 1.1E+02 0.0023 26.5 4.6 36 40-76 16-51 (268)
186 PLN03129 NADP-dependent malic 28.2 77 0.0017 30.9 4.0 72 19-106 391-468 (581)
187 PRK08508 biotin synthase; Prov 28.2 3.6E+02 0.0078 23.3 8.0 20 51-70 73-92 (279)
188 PRK02220 4-oxalocrotonate taut 28.1 1.2E+02 0.0026 19.4 3.9 37 106-149 22-58 (61)
189 COG1377 FlhB Flagellar biosynt 28.0 74 0.0016 29.1 3.7 65 53-119 246-311 (363)
190 TIGR03589 PseB UDP-N-acetylglu 28.0 3.3E+02 0.0072 23.6 7.9 51 24-75 72-124 (324)
191 PRK14723 flhF flagellar biosyn 27.9 1.8E+02 0.0039 29.4 6.6 70 23-105 260-335 (767)
192 PRK15057 UDP-glucose 6-dehydro 27.8 1.4E+02 0.003 27.4 5.5 67 15-86 61-129 (388)
193 KOG1111|consensus 27.5 1.9E+02 0.0042 26.8 6.1 118 23-154 189-311 (426)
194 PTZ00317 NADP-dependent malic 27.3 82 0.0018 30.5 4.0 72 19-106 371-448 (559)
195 cd06340 PBP1_ABC_ligand_bindin 27.1 2.3E+02 0.005 24.6 6.7 44 55-99 188-232 (347)
196 cd06533 Glyco_transf_WecG_TagA 27.0 1.5E+02 0.0033 23.6 5.1 20 58-77 91-110 (171)
197 PRK10084 dTDP-glucose 4,6 dehy 27.0 2.2E+02 0.0047 24.8 6.5 104 26-131 73-201 (352)
198 TIGR03466 HpnA hopanoid-associ 26.8 2.3E+02 0.005 24.0 6.6 51 24-75 62-112 (328)
199 PLN03209 translocon at the inn 26.6 1.9E+02 0.0041 28.2 6.3 51 24-75 157-207 (576)
200 PRK14042 pyruvate carboxylase 26.5 2.8E+02 0.0061 27.1 7.6 100 76-203 93-194 (596)
201 PRK12330 oxaloacetate decarbox 26.5 4.5E+02 0.0098 25.1 8.8 61 58-118 66-138 (499)
202 cd00553 NAD_synthase NAD+ synt 26.4 3.6E+02 0.0079 22.6 7.6 69 53-123 9-84 (248)
203 PLN00198 anthocyanidin reducta 26.4 2.4E+02 0.0052 24.4 6.6 52 24-75 78-130 (338)
204 PRK07188 nicotinate phosphorib 26.0 2.1E+02 0.0045 26.1 6.2 52 50-105 261-315 (352)
205 cd00877 Ran Ran (Ras-related n 25.9 1.4E+02 0.0031 23.0 4.6 25 56-80 92-116 (166)
206 TIGR00959 ffh signal recogniti 25.9 3.6E+02 0.0079 25.1 7.9 91 25-132 181-278 (428)
207 TIGR03471 HpnJ hopanoid biosyn 25.9 1.5E+02 0.0032 27.6 5.5 47 24-83 66-112 (472)
208 cd07950 Gallate_Doxase_N The N 25.9 1.8E+02 0.0039 25.3 5.7 36 46-82 28-63 (277)
209 PRK07680 late competence prote 25.8 1.3E+02 0.0027 25.7 4.7 46 18-79 53-100 (273)
210 PRK14721 flhF flagellar biosyn 25.8 98 0.0021 28.9 4.1 71 22-106 265-339 (420)
211 TIGR00642 mmCoA_mut_beta methy 25.7 3.7E+02 0.0081 26.4 8.2 61 25-103 545-605 (619)
212 TIGR00013 taut 4-oxalocrotonat 25.6 1.3E+02 0.0029 19.2 3.8 38 107-151 23-60 (63)
213 cd08060 MPN_UPF0172 Mov34/MPN/ 25.5 89 0.0019 25.6 3.5 25 52-76 88-112 (182)
214 cd04182 GT_2_like_f GT_2_like_ 25.2 97 0.0021 24.0 3.6 50 29-79 3-52 (186)
215 TIGR03289 frhB coenzyme F420 h 25.1 3.8E+02 0.0083 23.3 7.5 62 67-128 91-161 (275)
216 PF13419 HAD_2: Haloacid dehal 24.9 2.9E+02 0.0063 20.5 7.4 62 67-131 92-159 (176)
217 TIGR01513 NAPRTase_put putativ 24.9 1.7E+02 0.0036 27.5 5.5 51 53-104 261-311 (443)
218 smart00775 LNS2 LNS2 domain. T 24.8 1.8E+02 0.004 22.8 5.1 27 70-99 121-148 (157)
219 PRK13529 malate dehydrogenase; 24.7 99 0.0021 30.0 4.0 70 20-105 373-448 (563)
220 cd06343 PBP1_ABC_ligand_bindin 24.7 3.2E+02 0.007 23.7 7.2 18 57-74 190-207 (362)
221 TIGR01745 asd_gamma aspartate- 24.5 1.9E+02 0.0041 26.5 5.7 16 20-35 58-73 (366)
222 cd07372 2A5CPDO_B The beta sub 24.2 1.6E+02 0.0035 25.9 5.1 31 43-73 27-57 (294)
223 cd02069 methionine_synthase_B1 24.1 1.4E+02 0.0031 24.8 4.6 31 49-79 150-180 (213)
224 smart00176 RAN Ran (Ras-relate 24.1 1.4E+02 0.0031 24.3 4.5 47 24-80 65-111 (200)
225 TIGR03848 MSMEG_4193 probable 24.0 2.3E+02 0.005 22.8 5.7 53 40-93 115-168 (204)
226 cd04501 SGNH_hydrolase_like_4 24.0 2.4E+02 0.0052 21.8 5.7 51 25-79 58-108 (183)
227 PRK00094 gpsA NAD(P)H-dependen 24.0 1.7E+02 0.0036 25.3 5.1 49 15-79 59-109 (325)
228 PF02782 FGGY_C: FGGY family o 23.9 1.1E+02 0.0024 24.3 3.7 33 87-119 144-176 (198)
229 PRK10416 signal recognition pa 23.8 3.6E+02 0.0079 23.9 7.3 75 24-105 194-271 (318)
230 PLN03071 GTP-binding nuclear p 23.7 1.7E+02 0.0037 24.0 5.0 48 24-81 83-130 (219)
231 PRK05718 keto-hydroxyglutarate 23.7 3.8E+02 0.0082 22.4 7.0 56 51-110 25-82 (212)
232 PRK13226 phosphoglycolate phos 23.7 4.1E+02 0.0089 21.7 8.0 61 69-131 112-177 (229)
233 PRK12724 flagellar biosynthesi 23.5 4E+02 0.0087 25.0 7.7 71 25-105 298-371 (432)
234 cd03130 GATase1_CobB Type 1 gl 23.5 2.4E+02 0.0052 23.0 5.7 37 22-62 36-72 (198)
235 PTZ00413 lipoate synthase; Pro 23.3 3.6E+02 0.0078 25.1 7.2 44 25-75 192-235 (398)
236 TIGR01514 NAPRTase nicotinate 23.3 2.1E+02 0.0045 26.5 5.7 14 142-155 359-372 (394)
237 cd01567 NAPRTase_PncB Nicotina 23.3 2.3E+02 0.0051 25.2 6.0 43 67-110 264-311 (343)
238 cd06360 PBP1_alkylbenzenes_lik 23.3 2.1E+02 0.0046 24.4 5.6 17 56-72 179-195 (336)
239 PRK09330 cell division protein 23.2 1.4E+02 0.0031 27.5 4.6 44 23-77 94-137 (384)
240 PRK14040 oxaloacetate decarbox 23.2 5.5E+02 0.012 25.1 8.9 61 58-118 66-138 (593)
241 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 22.9 1.4E+02 0.0031 25.1 4.3 48 24-80 82-129 (232)
242 PRK14327 (dimethylallyl)adenos 22.9 2.1E+02 0.0047 27.3 5.9 78 24-116 101-184 (509)
243 PF01081 Aldolase: KDPG and KH 22.8 4E+02 0.0087 22.0 6.9 74 52-137 19-94 (196)
244 TIGR01993 Pyr-5-nucltdase pyri 22.6 3E+02 0.0065 21.5 6.0 72 55-131 86-167 (184)
245 TIGR02298 HpaD_Fe 3,4-dihydrox 22.6 2E+02 0.0044 25.1 5.3 25 49-73 30-54 (282)
246 cd06337 PBP1_ABC_ligand_bindin 22.5 3E+02 0.0065 24.1 6.5 47 55-103 192-239 (357)
247 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 22.4 1.6E+02 0.0035 24.5 4.6 49 24-81 70-118 (222)
248 PRK07531 bifunctional 3-hydrox 22.3 1.9E+02 0.004 27.3 5.4 20 15-34 68-88 (495)
249 smart00175 RAB Rab subfamily o 22.3 2.2E+02 0.0047 21.2 5.0 13 67-79 104-116 (164)
250 cd01824 Phospholipase_B_like P 22.3 1.6E+02 0.0034 25.7 4.6 55 25-79 118-175 (288)
251 PRK14722 flhF flagellar biosyn 22.2 2.1E+02 0.0046 26.2 5.6 70 22-105 211-293 (374)
252 PF03949 Malic_M: Malic enzyme 22.1 1.1E+02 0.0025 26.5 3.6 70 19-104 96-171 (255)
253 PRK06249 2-dehydropantoate 2-r 22.1 3.6E+02 0.0078 23.4 6.9 47 19-81 65-112 (313)
254 cd07368 PhnC_Bs_like PhnC is a 21.9 2.9E+02 0.0063 24.0 6.2 37 44-81 24-60 (277)
255 TIGR02254 YjjG/YfnB HAD superf 21.8 2.5E+02 0.0054 22.4 5.5 76 54-131 98-179 (224)
256 PRK13366 protocatechuate 4,5-d 21.7 1.7E+02 0.0036 25.8 4.6 35 43-78 25-59 (284)
257 PRK07090 class II aldolase/add 21.5 5E+02 0.011 22.3 7.5 100 20-132 73-185 (260)
258 PLN02662 cinnamyl-alcohol dehy 21.5 3.1E+02 0.0068 23.3 6.3 51 24-75 74-126 (322)
259 cd04124 RabL2 RabL2 subfamily. 21.5 2E+02 0.0043 21.9 4.7 21 59-79 95-115 (161)
260 PRK07114 keto-hydroxyglutarate 21.5 4.5E+02 0.0099 22.2 7.1 60 51-111 25-87 (222)
261 cd07369 PydA_Rs_like PydA is a 21.3 1.7E+02 0.0036 26.4 4.6 35 43-78 23-57 (329)
262 PF13394 Fer4_14: 4Fe-4S singl 21.3 48 0.0011 24.2 1.0 20 57-76 69-88 (119)
263 PF01370 Epimerase: NAD depend 21.2 1.4E+02 0.0031 23.9 3.9 101 24-131 61-174 (236)
264 PRK14041 oxaloacetate decarbox 21.2 3E+02 0.0065 26.0 6.5 62 57-118 63-136 (467)
265 KOG2882|consensus 21.2 1.8E+02 0.0039 26.0 4.7 44 81-131 207-250 (306)
266 PF03665 UPF0172: Uncharacteri 21.1 1.2E+02 0.0026 25.1 3.5 25 52-76 94-118 (196)
267 PRK11064 wecC UDP-N-acetyl-D-m 21.0 3E+02 0.0065 25.3 6.4 53 24-82 73-127 (415)
268 COG1893 ApbA Ketopantoate redu 20.9 3.5E+02 0.0075 23.9 6.6 51 16-82 57-108 (307)
269 PRK06298 type III secretion sy 20.9 45 0.00099 30.3 0.9 52 66-119 254-305 (356)
270 KOG0652|consensus 20.8 1.9E+02 0.0042 25.8 4.7 66 55-120 295-362 (424)
271 PLN02166 dTDP-glucose 4,6-dehy 20.6 2.8E+02 0.006 25.7 6.1 51 24-76 182-234 (436)
272 TIGR03328 salvage_mtnB methylt 20.3 4.7E+02 0.01 21.1 8.4 108 20-139 38-166 (193)
273 PF02277 DBI_PRT: Phosphoribos 20.2 3.1E+02 0.0068 24.6 6.1 84 25-109 99-192 (327)
274 PF13651 EcoRI_methylase: Aden 20.1 1.7E+02 0.0037 26.5 4.3 38 24-79 133-170 (336)
275 PTZ00397 macrophage migration 20.1 1.4E+02 0.0031 22.0 3.4 75 53-128 19-101 (116)
276 PRK06411 NADH dehydrogenase su 20.1 1.6E+02 0.0036 24.3 4.0 16 24-39 72-87 (183)
No 1
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=3.9e-65 Score=447.01 Aligned_cols=211 Identities=42% Similarity=0.697 Sum_probs=196.7
Q ss_pred ccccCCCCCCC-ceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKG-VNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~-~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
++++|++++.. ...+.. ++|++|+|||+||||||.||||||+|+||+..|++|++++++++++++|+++++|+|||+|
T Consensus 43 ~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD 122 (313)
T COG0039 43 LDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD 122 (313)
T ss_pred cchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH
Confidence 56677766643 333333 5699999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCC
Q psy17689 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159 (216)
Q Consensus 80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~ 159 (216)
+|||++|+.+|+|++||||+||.|||+||+++||++++++|++|++||+|||||||||+||+++|+|+|+.++++.
T Consensus 123 ~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~---- 198 (313)
T COG0039 123 ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE---- 198 (313)
T ss_pred HHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhCCChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 160 GDTEEFGKLHTDVVNSAYEIIRLKGY-TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 160 ~~~~~~~~l~~~v~~~g~~ii~~Kg~-t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
.++++++++.++||++|++|++.||+ |+||+|.|+++|+++|++|+++++|+|++++
T Consensus 199 ~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~~~~ail~d~~~vl~~s~~l~ 256 (313)
T COG0039 199 DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARMVEAILRDEKRVLPVSVYLD 256 (313)
T ss_pred ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHHHHHHHHcCCCceEEEEEeec
Confidence 24567899999999999999999988 9999999999999999999999999999985
No 2
>KOG1495|consensus
Probab=100.00 E-value=8.5e-65 Score=430.62 Aligned_cols=214 Identities=62% Similarity=1.060 Sum_probs=208.1
Q ss_pred cccCC----CCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 3 TTNDH----SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 3 ~~~d~----~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
|++|+ +|+..++++.++||...+|+++||||||..++||++|++++++|+.|||.+.+++.+|+|+++++++||||
T Consensus 61 E~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV 140 (332)
T KOG1495|consen 61 EMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV 140 (332)
T ss_pred hhhhhccccccccCCceEecCcccccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch
Confidence 45666 48899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689 79 DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158 (216)
Q Consensus 79 d~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~ 158 (216)
|+|||+.||.||||++||||+||.|||+|||++++++||++|+++++||+||||||.||.||.+.|+|.++.++.++.++
T Consensus 141 DilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t 220 (332)
T KOG1495|consen 141 DILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGT 220 (332)
T ss_pred HHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHHhCCCcccceEEEeeccCCccceecccccccceEHhHhChhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+.+++.|+++.++|.+++|+||+.||+|+|++|.++++++++|++|+++++||||.++
T Consensus 221 ~~d~e~w~eihK~v~~sayeviklKGyTswaIglsva~l~~ail~n~~~i~~Vst~~k 278 (332)
T KOG1495|consen 221 DYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSVADLAQAILRNLRRIHPVSTMVK 278 (332)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCcCceeeeeeccc
Confidence 8999999999999999999999999999999999999999999999999999998764
No 3
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1e-62 Score=433.98 Aligned_cols=213 Identities=32% Similarity=0.583 Sum_probs=195.0
Q ss_pred ccccCC-CCCCC-ceEEEcCCccccCCccEEEEcCCCCCCCCcC--HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 2 LTTNDH-SSFKG-VNVLTRLNYALSEGSRIVIVTAGVRQREGES--RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 2 ~~~~d~-~~~~~-~~v~~~~~~~~~~daDivvitag~~~k~g~~--r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
++++|+ +|... ...+.++||++++|||+||||||.||||||+ |+|++..|++|++++++++++++|++++|++|||
T Consensus 42 ~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP 121 (307)
T cd05290 42 LDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP 121 (307)
T ss_pred HHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 345664 45432 3344578999999999999999999999999 7999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689 78 VDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIG 157 (216)
Q Consensus 78 vd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~ 157 (216)
+|+|||++++.||||++||||+||.|||+||++++|+++|++|++|++||||||||||||+||+++|+|+|+.++++..+
T Consensus 122 vDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~ 201 (307)
T cd05290 122 LDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG 201 (307)
T ss_pred HHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHHhCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
.++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus 202 --~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~~ii~ail~d~~~v~~vsv~~~ 258 (307)
T cd05290 202 --KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSASRLIKAILLDERSILPVCTLLS 258 (307)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHHHHHHHHHhCCCeEEEEEEeeC
Confidence 134467899999999999999999999999999999999999999999999999864
No 4
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=1.9e-61 Score=424.68 Aligned_cols=214 Identities=44% Similarity=0.762 Sum_probs=197.0
Q ss_pred ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|+.++. ....+.+++|++++||||||||||.||+|||+|+|++..|++|++++++++++++|++++|++|||+|+
T Consensus 39 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~ 118 (299)
T TIGR01771 39 MDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDI 118 (299)
T ss_pred HHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 4677777554 333555788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~ 160 (216)
||+++++.+|||++||||+||.|||+|+++++|++++++|++|+++||||||+||||+||+++|+|+|+.+++++.+ ..
T Consensus 119 ~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~ 197 (299)
T TIGR01771 119 LTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TE 197 (299)
T ss_pred HHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865321 01
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
++.+++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus 198 ~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ail~d~~~v~~~s~~~~ 253 (299)
T TIGR01771 198 TDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAILHDENRVLPVSAYLD 253 (299)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence 23457899999999999999999999999999999999999999999999999874
No 5
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.3e-61 Score=424.63 Aligned_cols=215 Identities=62% Similarity=1.054 Sum_probs=200.6
Q ss_pred ccccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 2 LTTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 2 ~~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|++ |+....+..++||++++||||||||+|.|++|||+|+|++.+|++|++++++.|++++|++++|++|||+|+
T Consensus 46 ~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~ 125 (312)
T cd05293 46 MDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDI 125 (312)
T ss_pred HHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHH
Confidence 4667776 554456777799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~ 160 (216)
|||++++.+|||++||||+||.||++|+++++|+++++++++|+++||||||+||||+||+++|+|+|+.++++..++..
T Consensus 126 ~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~ 205 (312)
T cd05293 126 MTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDK 205 (312)
T ss_pred HHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHhCCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999975443334
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|+|++++
T Consensus 206 ~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~ii~ail~d~~~~~~vsv~~~ 261 (312)
T cd05293 206 DPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVK 261 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHcCCCeEEEEEEEeC
Confidence 45668999999999999999999999999999999999999999999999999864
No 6
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=2.5e-60 Score=424.98 Aligned_cols=215 Identities=53% Similarity=0.877 Sum_probs=199.3
Q ss_pred ccccCCC-CCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 2 LTTNDHS-SFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 2 ~~~~d~~-~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|++ |.....+..++||++++||||||||||.|++|||+|+|++.+|++|+++++++|++++|++++|++|||+|+
T Consensus 80 ~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv 159 (350)
T PLN02602 80 LDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV 159 (350)
T ss_pred HHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH
Confidence 4677776 443445555579999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~ 160 (216)
||+++++.+|||++||||+||.||++|+++++|+++|+++++|+++|||||||+|||+||+++|+|+|+.++++.....+
T Consensus 160 ~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~ 239 (350)
T PLN02602 160 LTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY 239 (350)
T ss_pred HHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876432335
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
++++++++.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus 240 ~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~~ 295 (350)
T PLN02602 240 EKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAK 295 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 56678999999999999999999999999999999999999999999999999863
No 7
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=6.1e-60 Score=416.28 Aligned_cols=210 Identities=20% Similarity=0.254 Sum_probs=191.9
Q ss_pred ccccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd 79 (216)
++++|++++..+.+..++| |++++||||||||||.|++|||+|+|++..|++|+++++++|+++ +|+++++++|||+|
T Consensus 33 ~Dl~da~~~~~~~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivvsNPvD 112 (309)
T PLN00135 33 MELIDAAFPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPAN 112 (309)
T ss_pred HHHHhhhHHhcCCcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCCcHH
Confidence 5677887554345554566 999999999999999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCce-eEEEEccCCCCcccceeeeeE----CCeeccccCc
Q psy17689 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV-YGFIIGEHGDSSVPVWSGVNV----AGVNLREVNP 154 (216)
Q Consensus 80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v-~~~v~G~HGds~vp~~S~~~v----~g~~l~~~~~ 154 (216)
+|||++++.+|+|++|+||+||.|||+|||++||++++++|++| +++||||||++|||+||+++| +|+|+.+++.
T Consensus 113 v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~S~a~v~~~~~g~p~~e~~~ 192 (309)
T PLN00135 113 TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDVNHATVKTPSGEKPVRELVA 192 (309)
T ss_pred HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeeccccceEecCCCCcCHHHHhC
Confidence 99999999999999999999999999999999999999999999 689999999999999999999 9999999853
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHc--CCCceEEEEeeeC
Q psy17689 155 AIGTEGDTEEFGKLHTDVVNSAYEIIRL-KGYTSWAIGLSIASLTYTLLN--NTNKIHAISTLIQ 216 (216)
Q Consensus 155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~-Kg~t~~~~a~a~~~ii~ail~--~~~~ilpvS~~l~ 216 (216)
+ .+.++++|.++++++|++|+++ ||+|+||+|.++++++++|++ |+++++|||++++
T Consensus 193 ~-----~~~~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vsv~~~ 252 (309)
T PLN00135 193 D-----DAWLNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMGVYSD 252 (309)
T ss_pred c-----hhhHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEEEEec
Confidence 1 1113688999999999999997 789999999999999999999 7799999999864
No 8
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=2.5e-58 Score=407.54 Aligned_cols=214 Identities=43% Similarity=0.739 Sum_probs=198.2
Q ss_pred ccccCCCCCCCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 2 LTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
++++|+........+.+++|++++|||+||||||.|++|||+|+|++..|++|++++++.+++++|+++++++|||+|+|
T Consensus 49 ~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~ 128 (315)
T PRK00066 49 MDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDIL 128 (315)
T ss_pred HHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHH
Confidence 46677763323334457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCC
Q psy17689 82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD 161 (216)
Q Consensus 82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~ 161 (216)
|+++++.+|||++||||+||.|||+|+++++|+++|++|++|+++||||||+||+|+||+++|+|+|+.+++.+. ..++
T Consensus 129 ~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~ 207 (315)
T PRK00066 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYD 207 (315)
T ss_pred HHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHHhCCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987542 2366
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 162 ~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++++++.++++++|++|++.||+|+||+|.++++++++|++|++.++|+|++++
T Consensus 208 ~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~~~~i~~ail~~~~~v~~~sv~~~ 262 (315)
T PRK00066 208 EEDLDEIFENVRDAAYEIIEKKGATYYGIAMALARITKAILNNENAVLPVSAYLE 262 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 6788999999999999999999999999999999999999999999999999864
No 9
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2e-58 Score=416.20 Aligned_cols=210 Identities=20% Similarity=0.193 Sum_probs=193.7
Q ss_pred ccccCCCCCCCceE-EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v-~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd 79 (216)
++++|++++....+ +.+++|++++|||+||||||.||+|||+|+|++..|++|++++++.|++++ |++++||+|||+|
T Consensus 95 ~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD 174 (387)
T TIGR01757 95 MELEDSLYPLLREVSIGIDPYEVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN 174 (387)
T ss_pred HHHHHhhhhhcCceEEecCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH
Confidence 57888885543344 357899999999999999999999999999999999999999999999986 9999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCcee-EEEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY-GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158 (216)
Q Consensus 80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~-~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~ 158 (216)
+|||++++.+|+||+||||+||.|||+|||++||+++++++++|+ ++||||||+||||+||+++|+|+|+.+++++.
T Consensus 175 v~t~v~~k~sg~~~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~-- 252 (387)
T TIGR01757 175 TNALIAMKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDT-- 252 (387)
T ss_pred HHHHHHHHHcCCCcccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhcccc--
Confidence 999999999999999999999999999999999999999999995 88999999999999999999999999986421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLL--NNTNKIHAISTLIQ 216 (216)
Q Consensus 159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~-~~a~a~~~ii~ail--~~~~~ilpvS~~l~ 216 (216)
+..+++|.++++++|++|++.||+|+| ++|.++++++++|+ +|+++++|||++++
T Consensus 253 ---~~~~~ei~~~v~~~g~eIi~~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~ 310 (387)
T TIGR01757 253 ---KWLEEEFTPTVQKRGGALIKKWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTD 310 (387)
T ss_pred ---cchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeC
Confidence 113678999999999999999999998 99999999999999 99999999999874
No 10
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=4.9e-58 Score=404.00 Aligned_cols=212 Identities=39% Similarity=0.624 Sum_probs=195.1
Q ss_pred cccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 3 TTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 3 ~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
+++|+.++. ....+.+++|+++++||+||+|+|.|++|||+|+|++.+|++|++++++++++++|++++|++|||+|+|
T Consensus 44 dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~ 123 (306)
T cd05291 44 DLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVI 123 (306)
T ss_pred hHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHH
Confidence 344554332 2333446789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCC
Q psy17689 82 TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD 161 (216)
Q Consensus 82 t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~ 161 (216)
|+++++.+|||++||||+||.||++|+++++|+++++++++|+++||||||++|||+||+++|+|+|+.+++.+. .+.
T Consensus 124 ~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~ 201 (306)
T cd05291 124 TYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLS 201 (306)
T ss_pred HHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987542 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 162 ~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++++++.++++++|++|+++||+|+||+|.|+++++++|++|+++++|||++++
T Consensus 202 ~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~ 256 (306)
T cd05291 202 ELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVKAILNDENAILPVSAYLD 256 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHcCCCEEEEEEEEec
Confidence 6678999999999999999999999999999999999999999999999999864
No 11
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=3.8e-58 Score=405.66 Aligned_cols=208 Identities=18% Similarity=0.235 Sum_probs=187.6
Q ss_pred ccccCCCCCCCceEEEcCCc-cccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNVLTRLNY-ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~~~~-~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd 79 (216)
++++|++|+.....+.++|| ++++||||||||||.||+|||+|+|++..|++|+++++++|++++| ++++|++|||+|
T Consensus 35 ~Dl~d~~~~~~~~~i~~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvD 114 (313)
T TIGR01756 35 MELEDCAFPNLAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVN 114 (313)
T ss_pred HHHHHhccccCCceEecCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchH
Confidence 56788885544334556787 5899999999999999999999999999999999999999999995 588999999999
Q ss_pred HHHHHH-HHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeE--CCeeccccCcc
Q psy17689 80 ILTYVS-WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNV--AGVNLREVNPA 155 (216)
Q Consensus 80 ~~t~~~-~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v--~g~~l~~~~~~ 155 (216)
+|||++ ++.+|||++ +||+||.|||+||+++||++++++|++|+++ ||||||++|||+||+++| +|+|+..+. .
T Consensus 115 v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp~~S~~~V~~~G~~~~~~~-~ 192 (313)
T TIGR01756 115 TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFD-E 192 (313)
T ss_pred HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceeecccccEEecCCeehhHhh-h
Confidence 999999 699999999 9999999999999999999999999999876 999999999999999999 999976651 1
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHc--CCCceEEEEeee
Q psy17689 156 IGTEGDT-EEFGKLHTDVVNSAYEIIRLKGYTSWAIG-LSIASLTYTLLN--NTNKIHAISTLI 215 (216)
Q Consensus 156 ~~~~~~~-~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a-~a~~~ii~ail~--~~~~ilpvS~~l 215 (216)
+++ ..++++.++++++|++|+++||+|+||+| .++++++++|++ |+++++|||+++
T Consensus 193 ----~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pvsv~l 252 (313)
T TIGR01756 193 ----LCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSMGIPV 252 (313)
T ss_pred ----cCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEEEEEe
Confidence 122 24689999999999999999999999988 599999999999 777999999987
No 12
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=4.4e-58 Score=406.93 Aligned_cols=209 Identities=21% Similarity=0.235 Sum_probs=189.8
Q ss_pred ccccCCCCCCCc-eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGV-NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~-~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd 79 (216)
++++|++++... ..+.+++|++++|||+||||||.|+||||+|+|++..|++|+++++++|++++| +++++++|||+|
T Consensus 54 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 54 MELEDCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred HHHhhccccccCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 456677644322 234468899999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689 80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIG 157 (216)
Q Consensus 80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~ 157 (216)
+|||++++.+ |||++||||+ |.|||+|||++||+++|++|++|++ +||||||++|||+||+++|+|+|+.+++.+
T Consensus 134 v~t~v~~k~s~g~p~~rViG~-t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~-- 210 (323)
T TIGR01759 134 TNALIASKNAPDIPPKNFSAM-TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKD-- 210 (323)
T ss_pred HHHHHHHHHcCCCCHHHEEEe-eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcc--
Confidence 9999999999 9999999998 9999999999999999999999976 599999999999999999999999998642
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689 158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNT--NKIHAISTLIQ 216 (216)
Q Consensus 158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~-~a~a~~~ii~ail~~~--~~ilpvS~~l~ 216 (216)
+..++++|.++++++|++|+++||+|+|+ +|.++++++++|++|+ ++++|||++++
T Consensus 211 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~ 269 (323)
T TIGR01759 211 ---DKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSD 269 (323)
T ss_pred ---hhhHHHHHHHHHHhhHHHHHhccCCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeC
Confidence 11236899999999999999999999995 7799999999999998 99999999874
No 13
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=3.6e-58 Score=420.17 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=194.2
Q ss_pred ccccCCCCCCCceE-EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHh-hCCCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK-YSPQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v-~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~-~~p~~iiivvtNPvd 79 (216)
++++|++++....+ +.+++|++++||||||||||.||+|||+|+|++..|++|+++++++|++ ++|++++||+|||+|
T Consensus 151 mDL~daa~~~~~~v~i~~~~ye~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD 230 (444)
T PLN00112 151 MELEDSLYPLLREVSIGIDPYEVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN 230 (444)
T ss_pred HHHHHhhhhhcCceEEecCCHHHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH
Confidence 67889886543444 3678999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccCCC
Q psy17689 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158 (216)
Q Consensus 80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~ 158 (216)
+|||++++.+|++++||||+||.|||+||+++||+++|+++++|++ +||||||+||||+||+++|+|+|+.+++++.
T Consensus 231 v~t~v~~k~sg~~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~-- 308 (444)
T PLN00112 231 TNALICLKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDH-- 308 (444)
T ss_pred HHHHHHHHHcCCCCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhccc--
Confidence 9999999999999999999999999999999999999999999966 8999999999999999999999999986421
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLL--NNTNKIHAISTLIQ 216 (216)
Q Consensus 159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~-~~a~a~~~ii~ail--~~~~~ilpvS~~l~ 216 (216)
+..+++|.++++++|++|+++||+|+| ++|.++++++++|+ +|+++++|||++++
T Consensus 309 ---~~~~~ei~~~v~~~g~~Ii~~kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~ 366 (444)
T PLN00112 309 ---KWLEEEFTPKVQKRGGVLIKKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTD 366 (444)
T ss_pred ---cchHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeC
Confidence 113688999999999999999999998 99999999999999 99999999999874
No 14
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=6.6e-58 Score=406.23 Aligned_cols=209 Identities=17% Similarity=0.183 Sum_probs=190.7
Q ss_pred ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd 79 (216)
++++|++++. ....+.+++|++++||||||||||.|+||||+|+|++..|++|+++++++|++|+ |++++|++|||+|
T Consensus 55 ~Dl~~~~~~~~~~~~i~~~~y~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 134 (326)
T PRK05442 55 MELDDCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN 134 (326)
T ss_pred hhhhhhhhhhcCCcEEecChHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH
Confidence 5677876442 2223457889999999999999999999999999999999999999999999987 8999999999999
Q ss_pred HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689 80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIG 157 (216)
Q Consensus 80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~ 157 (216)
+|||++++.+ |||++||||+ |.|||+||+++||++++++|++|+++ ||||||++|||+||+++|+|+|+.+++.+
T Consensus 135 v~t~v~~k~s~g~p~~rViG~-t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~-- 211 (326)
T PRK05442 135 TNALIAMKNAPDLPAENFTAM-TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVIND-- 211 (326)
T ss_pred HHHHHHHHHcCCCCHHHEEee-eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccc--
Confidence 9999999999 9999999999 99999999999999999999999997 59999999999999999999999998631
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHH-HHHHHHHHHcC--CCceEEEEeeeC
Q psy17689 158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLS-IASLTYTLLNN--TNKIHAISTLIQ 216 (216)
Q Consensus 158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a-~~~ii~ail~~--~~~ilpvS~~l~ 216 (216)
.+.++++|.++++++|++|+++||+|+|++|.+ +++++++|++| +++++|||++++
T Consensus 212 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~ 270 (326)
T PRK05442 212 ---QAWLEDTFIPTVQKRGAAIIEARGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSD 270 (326)
T ss_pred ---hhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEec
Confidence 011367899999999999999999999999999 59999999999 899999999864
No 15
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=3.5e-57 Score=397.80 Aligned_cols=210 Identities=44% Similarity=0.747 Sum_probs=196.3
Q ss_pred ccccCCCCC-CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 2 LTTNDHSSF-KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 2 ~~~~d~~~~-~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|+... ...++..++||++++|||+||+|+|.|++|||+|++++.+|++|+++++++|++++|++++|++|||+|+
T Consensus 41 ~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~ 120 (300)
T cd00300 41 LDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI 120 (300)
T ss_pred HhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHH
Confidence 356666654 3345565678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~ 160 (216)
||+++++.+|||++||||+||.|||+|+++++|+++++++++|+++|+||||++|||+||+++|+|+|+.+++++
T Consensus 121 ~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~----- 195 (300)
T cd00300 121 LTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF----- 195 (300)
T ss_pred HHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998752
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++++++|.++++++|++|+++||+|+||+|.++++++++|++|+++++|||++++
T Consensus 196 ~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~ai~~~~~~v~~~s~~~~ 251 (300)
T cd00300 196 TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKSILLDERRVLPVSAVQE 251 (300)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999864
No 16
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=6.7e-57 Score=397.33 Aligned_cols=203 Identities=50% Similarity=0.820 Sum_probs=193.3
Q ss_pred eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC
Q psy17689 14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK 93 (216)
Q Consensus 14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~ 93 (216)
..+.++||++++|||+||+|+|.|++||++|++++..|+++++++++.+++++|+|+++++|||+|+||+++++.+|||+
T Consensus 55 ~~i~~~d~~~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~ 134 (308)
T cd05292 55 VRIYAGDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPP 134 (308)
T ss_pred eEEeeCCHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCH
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHH
Q psy17689 94 NRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVV 173 (216)
Q Consensus 94 ~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~ 173 (216)
+||||+||.|||+|+++++|+++++++++|+++||||||++|||+||+++|+|+|+.++++..+.++++++++++.++++
T Consensus 135 ~~viG~gt~LDs~R~~~~la~~~~v~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~ 214 (308)
T cd05292 135 NRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVR 214 (308)
T ss_pred HHeecccchhhHHHHHHHHHHHhCCCccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765434466677899999999
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 174 NSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 174 ~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
++|++|+++||+|+||+|.++++|+++|++|+++++|||++++
T Consensus 215 ~~g~~ii~~kg~t~~~~a~a~~~i~~ail~~~~~v~~~s~~~~ 257 (308)
T cd05292 215 NAAYEIIERKGATYYAIGLALARIVEAILRDENSVLTVSSLLD 257 (308)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEEc
Confidence 9999999999999999999999999999999999999999864
No 17
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-56 Score=396.39 Aligned_cols=210 Identities=25% Similarity=0.293 Sum_probs=190.4
Q ss_pred ccccCCCCC--CCceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCch
Q psy17689 2 LTTNDHSSF--KGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPV 78 (216)
Q Consensus 2 ~~~~d~~~~--~~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPv 78 (216)
++++|++++ ... .+.+++|++++|||+||+|||.|++|||+|+|++..|++|+++++++|++++ |++++|++|||+
T Consensus 51 ~Dl~d~~~~~~~~~-~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 51 MELQDCAFPLLKGV-VITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred eehhhhcccccCCc-EEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 567777533 333 3446789999999999999999999999999999999999999999999995 999999999999
Q ss_pred hHHHHHHHHhcC-CCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECCeeccccCccC
Q psy17689 79 DILTYVSWKLSG-FPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAI 156 (216)
Q Consensus 79 d~~t~~~~~~sg-~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~ 156 (216)
|+|||++++.+| ||++||||+ |.|||+|||++||++++++|++|++ +||||||++|+|+||+++|+|+|+.++.+.
T Consensus 130 D~~t~~~~k~sg~~p~~~vig~-t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~- 207 (323)
T cd00704 130 NTNALIALKNAPNLPPKNFTAL-TRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD- 207 (323)
T ss_pred HHHHHHHHHHcCCCCHHHEEEe-eHHHHHHHHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc-
Confidence 999999999999 599999999 9999999999999999999999965 799999999999999999999999988653
Q ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHcCCC--ceEEEEeeeC
Q psy17689 157 GTEGDTE-EFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNTN--KIHAISTLIQ 216 (216)
Q Consensus 157 ~~~~~~~-~~~~l~~~v~~~g~~ii~~Kg~t~~~-~a~a~~~ii~ail~~~~--~ilpvS~~l~ 216 (216)
.++++ ..++|.++++++|++|+++||+|+|+ +|.++++++++|++|++ +++|||++++
T Consensus 208 --~~~~~~~~~~i~~~v~~~~~~Ii~~kg~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~ 269 (323)
T cd00704 208 --LLDEEWLNDEFVKTVQKRGAAIIKKRGASSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSP 269 (323)
T ss_pred --ccChHHHHHHHHHHHHhhHHHHHhccCcchhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeC
Confidence 12333 35789999999999999999999997 69999999999999999 9999999874
No 18
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3.6e-56 Score=392.29 Aligned_cols=197 Identities=33% Similarity=0.572 Sum_probs=188.6
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.++..++||++++|||+||||+|.|++||++|+|++..|++++++++++|++++|++++|++|||+|+||+++++.+|||
T Consensus 56 ~~i~~t~d~~~~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~ 135 (305)
T TIGR01763 56 TKVTGTNNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFP 135 (305)
T ss_pred cEEEecCCHHHhCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcC
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV 172 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v 172 (216)
++||||+||.|||+||++++|++|++++++|+++|||||||||||+||+++|+|+|+.+++. +++++++.+++
T Consensus 136 ~~rviG~g~~lds~R~~~~la~~l~v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v 208 (305)
T TIGR01763 136 KERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERT 208 (305)
T ss_pred HHHEEEeccchHHHHHHHHHHHHhCcCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999853 34588999999
Q ss_pred HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++|++|++. ||+|+||+|.++++|+++|++|+++++|||++++
T Consensus 209 ~~~g~~ii~~~~kg~t~~~~a~~~~~i~~ai~~~~~~v~~~s~~~~ 254 (305)
T TIGR01763 209 RKGGGEIVNLLKQGSAYYAPAASVVEMVEAILKDRKRVLPCAAYLD 254 (305)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEEEec
Confidence 9999999997 7799999999999999999999999999999874
No 19
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=6.4e-56 Score=393.42 Aligned_cols=210 Identities=20% Similarity=0.216 Sum_probs=190.7
Q ss_pred ccccCCCCCCCceEEEc-CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNVLTR-LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~-~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd 79 (216)
++++|++++....++.+ ++|++++|||+||+|||.|+++|++|++++..|++|+++++++|++++ |++++|++|||+|
T Consensus 50 ~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD 129 (324)
T TIGR01758 50 MELMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN 129 (324)
T ss_pred eehhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 56778875444445544 459999999999999999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeEC-C---eeccccCc
Q psy17689 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVA-G---VNLREVNP 154 (216)
Q Consensus 80 ~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~-g---~~l~~~~~ 154 (216)
+|||++++.+|++|++|||+||.|||+|||++||++++++|++|++ +||||||++|||+||+++|+ | +|+.+++.
T Consensus 130 v~t~v~~~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~ 209 (324)
T TIGR01758 130 TNALVLSNYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIK 209 (324)
T ss_pred HHHHHHHHHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhc
Confidence 9999999999888888999999999999999999999999999975 89999999999999999999 9 99999864
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHH--cCCCceEEEEeeeC
Q psy17689 155 AIGTEGDTEEFGKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLL--NNTNKIHAISTLIQ 216 (216)
Q Consensus 155 ~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail--~~~~~ilpvS~~l~ 216 (216)
+ +..+++++.++++++|++|++.|| +|+||+|.++++++++|+ .|+++++|||++++
T Consensus 210 ~-----~~~~~~~i~~~v~~~g~~Ii~~k~~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~ 269 (324)
T TIGR01758 210 D-----DAYLDGEFITTVQQRGAAIIRARKLSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSD 269 (324)
T ss_pred c-----hhhHHHHHHHHHHhCHHHHHhccCCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecC
Confidence 2 112367899999999999999765 999999999999999999 89999999999874
No 20
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-54 Score=381.81 Aligned_cols=202 Identities=32% Similarity=0.499 Sum_probs=192.1
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCc-----CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHH
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWK 87 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~-----~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~ 87 (216)
.++..++||++++|||+||+|+|.|++||+ +|++++..|++++++++++|++++|++++|++|||+|++++.+++
T Consensus 61 ~~I~~~~d~~~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~ 140 (321)
T PTZ00082 61 SKVIGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQE 140 (321)
T ss_pred eEEEECCCHHHhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH
Confidence 466677999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHH
Q psy17689 88 LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGK 167 (216)
Q Consensus 88 ~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~ 167 (216)
.+|+|++||||+||.||++|+++++|+++++++++|+++|+||||+||||+||+++|+|+|+.+++++. .++++++++
T Consensus 141 ~sg~p~~rviGlgt~lds~R~~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~--~~~~~~~~~ 218 (321)
T PTZ00082 141 HSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKKG--LITQEEIDE 218 (321)
T ss_pred hcCCChhhEEEecCcccHHHHHHHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhcc--cCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997641 255677899
Q ss_pred HHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 168 LHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 168 l~~~v~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+.++++++|++|++. ||+|+||+|.++++|+++|++|+++++|||++++
T Consensus 219 i~~~~~~~g~~i~~~~gkg~t~~~ia~a~~~i~~ail~d~~~v~~vs~~~~ 269 (321)
T PTZ00082 219 IVERTRNTGKEIVDLLGTGSAYFAPAAAAIEMAEAYLKDKKRVLPCSAYLE 269 (321)
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence 999999999999995 6899999999999999999999999999999874
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2e-54 Score=383.59 Aligned_cols=209 Identities=18% Similarity=0.194 Sum_probs=189.3
Q ss_pred ccccCCCCCCC-ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKG-VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~-~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd 79 (216)
++++|++++.. ...+.+++|++++|||+||||||.|++|||+|+|++..|++|+++++++|++++ |++++|++|||+|
T Consensus 53 ~Dl~~~~~~~~~~~~i~~~~~~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (322)
T cd01338 53 MELEDCAFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN 132 (322)
T ss_pred hhhhhccccccCceEEecCcHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH
Confidence 56777764422 223447889999999999999999999999999999999999999999999999 5999999999999
Q ss_pred HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECCeeccccCccCC
Q psy17689 80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAGVNLREVNPAIG 157 (216)
Q Consensus 80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~ 157 (216)
+|||++++.+ |||++||||+ |.||++||++++|+++|+++++|+++ ||||||++++|+||+++++|+|+.+++.+
T Consensus 133 ~~t~~~~k~sg~~p~~~ViG~-t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~-- 209 (322)
T cd01338 133 TNALIAMKNAPDIPPDNFTAM-TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVIND-- 209 (322)
T ss_pred HHHHHHHHHcCCCChHheEEe-hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcCh--
Confidence 9999999999 5999999999 99999999999999999999999995 79999999999999999999999887531
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689 158 TEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIG-LSIASLTYTLLNNT--NKIHAISTLIQ 216 (216)
Q Consensus 158 ~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a-~a~~~ii~ail~~~--~~ilpvS~~l~ 216 (216)
.+.++++|.++++++|++|+++||+|+|++| .++++++++|++|+ ++++|||++++
T Consensus 210 ---~~~~~~~i~~~v~~~g~~Ii~~kG~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~ 268 (322)
T cd01338 210 ---RAWLEDEFIPTVQKRGAAIIKARGASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSD 268 (322)
T ss_pred ---HhhHHHHHHHHHHhhHHHHHhCcCCccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence 0113679999999999999999999999999 59999999999999 59999999864
No 22
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=4.4e-54 Score=379.59 Aligned_cols=199 Identities=37% Similarity=0.598 Sum_probs=189.2
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.++..++||++++|||+||+|+|.|++||++|.+++..|+++++++++.|++++|++++||++||+|++|+++++.+|||
T Consensus 59 ~~i~~~~d~~~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~ 138 (309)
T cd05294 59 AEIKISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFD 138 (309)
T ss_pred cEEEECCCHHHhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCC
Confidence 35556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV 172 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v 172 (216)
++||||+||.|||+|++++||+++++++++|+++|+|||||||||+||+++|+|+|+.++.+ .++++++++.+++
T Consensus 139 ~~~viG~gt~LDs~R~~~~la~~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v 213 (309)
T cd05294 139 KNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETV 213 (309)
T ss_pred HHHEeeccchHHHHHHHHHHHHHHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999853 1245678999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 173 VNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 173 ~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++|++|++.||+|+||+|.++++++++|++|++.++|||++++
T Consensus 214 ~~~g~~i~~~kg~t~~~~a~~~~~ii~ail~~~~~v~~vsv~~~ 257 (309)
T cd05294 214 KNAGQNIISLKGGSEYGPASAISNLVRTIANDERRILTVSTYLE 257 (309)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHCCCCeEEEEEEEEC
Confidence 99999999999999999999999999999999999999999864
No 23
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.6e-54 Score=380.67 Aligned_cols=196 Identities=24% Similarity=0.351 Sum_probs=175.8
Q ss_pred ccccCCCCCCCceEEEc-CC---ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 2 LTTNDHSSFKGVNVLTR-LN---YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~-~~---~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
++++|+.. ...+..+ ++ |++++|||+||||||.||+|||+|+||+..|++|+++++++|++++|++++|++|||
T Consensus 42 lDL~~~~~--~~~i~~~~~~~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 42 ADLSHINT--PAKVTGYLGPEELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred hHhHhCCC--cceEEEecCCCchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 45566652 2455543 44 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHH----HHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC-CCCcccceeeeeECCeecccc
Q psy17689 78 VDIL----TYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREV 152 (216)
Q Consensus 78 vd~~----t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~ 152 (216)
+|+| +|++++.+|||++||||+|+ |||+||++++|+++|+++++|+++||||| ||||||+||++.+. .+
T Consensus 120 vDv~~~i~t~~~~~~s~~p~~rviG~~~-LDs~R~~~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~----~~- 193 (310)
T cd01337 120 VNSTVPIAAEVLKKAGVYDPKRLFGVTT-LDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPP----FT- 193 (310)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHEEeeec-hHHHHHHHHHHHHhCcCHHHEEEEEEecCCCCceeccccccccc----cc-
Confidence 9998 99999999999999999965 99999999999999999999999999999 89999999999652 22
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHHcC---CCceEEEE
Q psy17689 153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLLNN---TNKIHAIS 212 (216)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail~~---~~~ilpvS 212 (216)
++++++++|.++++++|++|+++ ||+|+||+|.++++|+++|++| ++.++|+|
T Consensus 194 -------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s 252 (310)
T cd01337 194 -------FDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRGLKGEKGVIECA 252 (310)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHHhcCCCcceEEEE
Confidence 23456889999999999999997 4999999999999999999955 77888888
No 24
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-53 Score=377.95 Aligned_cols=202 Identities=32% Similarity=0.490 Sum_probs=191.9
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.++..++||++++|||+||+++|.|++|||+|+|++..|+++++++++.|+++||++++|++|||+|++|+++++.+++|
T Consensus 60 ~~i~~~~d~~~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p 139 (319)
T PTZ00117 60 INILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIP 139 (319)
T ss_pred eEEEeCCCHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCC
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV 172 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v 172 (216)
++||+|+||.||++|+++++|++++++|++|+++|+||||++|||+||+++|+|+|+.+++++ ..+++++++++.+++
T Consensus 140 ~~rviG~gt~lds~R~~~~la~~l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v 217 (319)
T PTZ00117 140 SNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKK--GAITEKEINEIIKKT 217 (319)
T ss_pred cccEEEecchHHHHHHHHHHHHHhCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhc--cccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998754 225667789999999
Q ss_pred HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++|++|+++ ||+|+||+|.++++++++|++|+++++|||++++
T Consensus 218 ~~~g~~ii~~~~kg~t~~~~a~a~~~~~~ail~~~~~v~~~s~~~~ 263 (319)
T PTZ00117 218 RNMGGEIVKLLKKGSAFFAPAAAIVAMIEAYLKDEKRVLVCSVYLN 263 (319)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999999997 8999999999999999999999999999999864
No 25
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=8e-54 Score=378.00 Aligned_cols=198 Identities=21% Similarity=0.334 Sum_probs=176.7
Q ss_pred ccccCCCCCCCceEEE-cC-C--ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 2 LTTNDHSSFKGVNVLT-RL-N--YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~-~~-~--~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
++++|.. ....+.. ++ + |++++|||+||+|||.|++|||+|+|++..|++|+++++++|++++|++++|++|||
T Consensus 41 ~DL~~~~--~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 41 ADLSHIP--TAASVKGFSGEEGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred chhhcCC--cCceEEEecCCCchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 3445544 2345554 33 3 899999999999999999999999999999999999999999999999999999999
Q ss_pred hhH----HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeecccc
Q psy17689 78 VDI----LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREV 152 (216)
Q Consensus 78 vd~----~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~ 152 (216)
+|+ ||+++++.+|||++||||+|+ |||+||+++||++++++|++|+++||||||+ ||||+||++++ .++
T Consensus 119 vDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~--- 192 (312)
T TIGR01772 119 VNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANTFVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL--- 192 (312)
T ss_pred hhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHHHHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC---
Confidence 998 999999999999999999976 9999999999999999999999999999986 99999999984 221
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHH---cCCCceEEEEeee
Q psy17689 153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLL---NNTNKIHAISTLI 215 (216)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail---~~~~~ilpvS~~l 215 (216)
++++++++|.++|+++|++|+++ ||+|+||+|.|+++|+++|+ +|+++++|+| ++
T Consensus 193 -------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~ 253 (312)
T TIGR01772 193 -------FTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRGLKGEEGVVECA-YV 253 (312)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHhhCCCccEEEEE-EE
Confidence 23456889999999999999997 68999999999999999999 5899999966 65
No 26
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.9e-53 Score=386.53 Aligned_cols=207 Identities=15% Similarity=0.143 Sum_probs=187.3
Q ss_pred CccccCCCCCCCc-eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC--CeEEEEEcCc
Q psy17689 1 VLTTNDHSSFKGV-NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP--QCTLLIVSNP 77 (216)
Q Consensus 1 ~~~~~d~~~~~~~-~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p--~~iiivvtNP 77 (216)
++|++|++|+... ..+.+++|++++|||+||+|+|.||+|||+|+|++..|++|+++++++|++++| ++++|++|||
T Consensus 173 amDL~D~a~pll~~v~i~~~~~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNP 252 (452)
T cd05295 173 VMEVEDLAFPLLRGISVTTDLDVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTF 252 (452)
T ss_pred HHHHHHhHHhhcCCcEEEECCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCc
Confidence 3688999977543 345578899999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeE-EEEccCCCCcccceeeeeECC---------
Q psy17689 78 VDILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG-FIIGEHGDSSVPVWSGVNVAG--------- 146 (216)
Q Consensus 78 vd~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~-~v~G~HGds~vp~~S~~~v~g--------- 146 (216)
+|+||+++++.+ |||++||||+|| |||+||+++||+++|+++++|+. +||||||+||||+||+++|+|
T Consensus 253 vD~~t~i~~k~apgiP~~rVig~gt-lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~ 331 (452)
T cd05295 253 LNLKTSILIKYAPSIPRKNIIAVAR-LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPP 331 (452)
T ss_pred HHHHHHHHHHHcCCCCHHHEEEecc-hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEccccccccccc
Confidence 999999999999 999999999988 77999999999999999999965 899999999999999999987
Q ss_pred ---eeccccCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCC--CceEEEEeeeC
Q psy17689 147 ---VNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNT--NKIHAISTLIQ 216 (216)
Q Consensus 147 ---~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~--~~ilpvS~~l~ 216 (216)
+|+.+++.+ .+-..+++.+.++++++ ++||+|+||+|.|+++++++|++|+ ++++|||++++
T Consensus 332 ~~~~pl~e~i~d-----~~w~~~~~~~~v~~rg~---~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sd 398 (452)
T cd05295 332 NYSRPVLELVHD-----SKWINGEFVATLKSLSS---SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISE 398 (452)
T ss_pred ccCccHHHHhcc-----hhhhHHHHHHHHHHHHH---hccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeec
Confidence 999888531 01123678999999999 7899999999999999999999997 69999999874
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-52 Score=371.13 Aligned_cols=209 Identities=21% Similarity=0.251 Sum_probs=186.1
Q ss_pred ccccCCCCCCCceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd 79 (216)
++++|++++....+...++ |++++|||+||+|||.|+++|++|.+++..|++|++++++.|++++ |++++|++|||+|
T Consensus 53 ~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD 132 (325)
T cd01336 53 MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN 132 (325)
T ss_pred eehhhccccccCCceecCCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH
Confidence 4566665333334444566 5889999999999999999999999999999999999999999996 8999999999999
Q ss_pred HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeEC----CeeccccC
Q psy17689 80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVA----GVNLREVN 153 (216)
Q Consensus 80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~----g~~l~~~~ 153 (216)
+|||++++.+ ++|+++ ||+||.||++||++++|++++++|++|+++ ||||||+||||+||+++|+ |+|+.+++
T Consensus 133 ~~t~~~~k~~~~~~~~~-ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~ 211 (325)
T cd01336 133 TNALILLKYAPSIPKEN-FTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAV 211 (325)
T ss_pred HHHHHHHHHcCCCCHHH-EEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHh
Confidence 9999999995 787777 999999999999999999999999999876 9999999999999999999 99999986
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHcC--CCceEEEEeeeC
Q psy17689 154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRL-KGYTSWAIGLSIASLTYTLLNN--TNKIHAISTLIQ 216 (216)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~-Kg~t~~~~a~a~~~ii~ail~~--~~~ilpvS~~l~ 216 (216)
++. ...+++|.++++++|++|+++ ||+|+||+|.++++++++|++| +++++|||++++
T Consensus 212 ~~~-----~~~~~~i~~~v~~~g~~Ii~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~ 272 (325)
T cd01336 212 KDD-----AWLNGEFISTVQKRGAAVIKARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSD 272 (325)
T ss_pred ccc-----chhHHHHHHHHHhhHHHHHHccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecC
Confidence 421 113688999999999999996 6799999999999999999998 499999999864
No 28
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=1.6e-51 Score=361.54 Aligned_cols=197 Identities=36% Similarity=0.610 Sum_probs=188.0
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.++..++||++++|||+||+++|.|++||++|++++..|++++++++++|.+++|++++|++|||+|++|+++++.+|+|
T Consensus 53 ~~I~~t~d~~~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~ 132 (300)
T cd01339 53 TKVTGTNDYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFP 132 (300)
T ss_pred eEEEEcCCHHHhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCC
Confidence 45666788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV 172 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v 172 (216)
|+||||+||.||++|+++++|++|++++++|+++|+||||++++|+||+++|+|+|+.+++. +++++++.+++
T Consensus 133 ~~rviGlgt~lds~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v 205 (300)
T cd01339 133 RNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERT 205 (300)
T ss_pred HHHEEEecchHHHHHHHHHHHHHhCCCccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998853 34589999999
Q ss_pred HHHHHHHHHhh--CCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 173 VNSAYEIIRLK--GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 173 ~~~g~~ii~~K--g~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++|++|++.| |+|+||+|.++++|+++|++|++.++|||++++
T Consensus 206 ~~~~~~ii~~k~~g~t~~~~a~~~~~i~~ail~~~~~i~~~s~~~~ 251 (300)
T cd01339 206 RNGGAEIVNLLKTGSAYYAPAAAIAEMVEAILKDKKRVLPCSAYLE 251 (300)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence 99999999976 999999999999999999999999999999864
No 29
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-50 Score=358.53 Aligned_cols=187 Identities=24% Similarity=0.412 Sum_probs=172.6
Q ss_pred ceEEEcCC----ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH--
Q psy17689 13 VNVLTRLN----YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW-- 86 (216)
Q Consensus 13 ~~v~~~~~----~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~-- 86 (216)
..+..++| |++++|||+||+|+|.|++||++|++++..|+++++++++++++++|+++++++|||+|+|+++++
T Consensus 59 ~~v~~~td~~~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~ 138 (321)
T PTZ00325 59 AKVTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAET 138 (321)
T ss_pred ceEEEecCCCchHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhh
Confidence 34544444 889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred --HhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeeccccCccCCCCCCHH
Q psy17689 87 --KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREVNPAIGTEGDTE 163 (216)
Q Consensus 87 --~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~~~~~~~~~~~~ 163 (216)
+.+|+||+||||+|+ |||+||+++||+++|++|++|++|||||||| ||||+||++ |+|+ +++
T Consensus 139 ~~~~sg~p~~~viG~g~-LDs~R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~ 203 (321)
T PTZ00325 139 LKKAGVYDPRKLFGVTT-LDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEE 203 (321)
T ss_pred hhhccCCChhheeechh-HHHHHHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHH
Confidence 899999999999985 9999999999999999999999999999999 899999998 7664 235
Q ss_pred HHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHcC---CCceEEEEeee
Q psy17689 164 EFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNN---TNKIHAISTLI 215 (216)
Q Consensus 164 ~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~~---~~~ilpvS~~l 215 (216)
+++++.++++++||+|++.| |+|+||||.++++|+++|++| +++++||| ++
T Consensus 204 ~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~ 260 (321)
T PTZ00325 204 QVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FV 260 (321)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EE
Confidence 68899999999999999976 799999999999999999965 99999996 54
No 30
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=3.1e-50 Score=353.78 Aligned_cols=197 Identities=36% Similarity=0.592 Sum_probs=187.7
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.++..++||++++|||+||+++|.|++||++|++++.+|+++++++++.+++++|++++|++|||+|+||+++++.+|+|
T Consensus 57 ~~i~~~~d~~~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~ 136 (307)
T PRK06223 57 TKITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFP 136 (307)
T ss_pred cEEEeCCCHHHHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCC
Confidence 45556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDV 172 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v 172 (216)
++||||+||.|||+||+++||++++++|++|+++|+||||++++|+||+++|+|.|+.+++ +++.+++|.+++
T Consensus 137 ~~~viG~gt~lds~r~~~~la~~l~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v 209 (307)
T PRK06223 137 KNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERT 209 (307)
T ss_pred cccEEEeCCCcHHHHHHHHHHHHhCcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999873 234578999999
Q ss_pred HHHHHHHHHh--hCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 173 VNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 173 ~~~g~~ii~~--Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+++|++|++. ||++.|++|.++++++++|++|++.++|||++++
T Consensus 210 ~~~~~~ii~~~~kg~t~~~~A~~~~~ii~ail~~~~~~~~~~v~~~ 255 (307)
T PRK06223 210 RKGGAEIVGLLKTGSAYYAPAASIAEMVEAILKDKKRVLPCSAYLE 255 (307)
T ss_pred HHHHHHHHhhcccCChhHHHHHHHHHHHHHHHcCCCcEEEEEEEec
Confidence 9999999997 8999999999999999999999999999999864
No 31
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.2e-50 Score=355.48 Aligned_cols=183 Identities=26% Similarity=0.449 Sum_probs=171.3
Q ss_pred cCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHH----HhcCCC
Q psy17689 18 RLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSW----KLSGFP 92 (216)
Q Consensus 18 ~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~----~~sg~~ 92 (216)
.+| |++++|+|+||+|+|.|++||++|++++..|++++++++++|++++|+++++++|||+|+||++++ +.+|||
T Consensus 60 ~~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p 139 (312)
T PRK05086 60 GEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYD 139 (312)
T ss_pred CCCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCC
Confidence 346 688999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCC-CcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHH
Q psy17689 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD-SSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTD 171 (216)
Q Consensus 93 ~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGd-s~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~ 171 (216)
++||||+|+ |||+|+++++|+++|++|++|+++||||||+ ||||+||++ +|+|+. +++++++.++
T Consensus 140 ~~rvig~~~-Lds~R~~~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l~-----------~~~~~~i~~~ 205 (312)
T PRK05086 140 KNKLFGVTT-LDVIRSETFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSFT-----------EQEVADLTKR 205 (312)
T ss_pred HHHEEeeec-HHHHHHHHHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccCC-----------HHHHHHHHHH
Confidence 999999975 9999999999999999999999999999976 999999999 887762 3458899999
Q ss_pred HHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHc---CCCceEEEEeee
Q psy17689 172 VVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLN---NTNKIHAISTLI 215 (216)
Q Consensus 172 v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~---~~~~ilpvS~~l 215 (216)
++++|++|+++| |+|+||+|.++++++++|++ |+++++|+| ++
T Consensus 206 v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~ 254 (312)
T PRK05086 206 IQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECA-YV 254 (312)
T ss_pred HHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EE
Confidence 999999999988 89999999999999999995 489999976 54
No 32
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=1.4e-49 Score=352.29 Aligned_cols=198 Identities=24% Similarity=0.319 Sum_probs=176.3
Q ss_pred ccccCCCCCCCceEEE-cCC---ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 2 LTTNDHSSFKGVNVLT-RLN---YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~-~~~---~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
++++|+... ..+.. +++ |++++|||+||+|||.|++||++|+|++..|++|++++++++++++|+++++++|||
T Consensus 60 ~Dl~~~~~~--~~i~~~~~~~d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP 137 (323)
T PLN00106 60 ADVSHINTP--AQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP 137 (323)
T ss_pred chhhhCCcC--ceEEEEeCCCCHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345555553 23332 345 778999999999999999999999999999999999999999999999999999999
Q ss_pred hh----HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCC-CCcccceeeeeECCeecccc
Q psy17689 78 VD----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHG-DSSVPVWSGVNVAGVNLREV 152 (216)
Q Consensus 78 vd----~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HG-ds~vp~~S~~~v~g~~l~~~ 152 (216)
+| +|+|++++.+||||+||||+|+ ||++||++++|+++|+++.+|+++|+|||| +||||+||++++. .+
T Consensus 138 vD~~~~i~t~~~~~~s~~p~~~viG~~~-LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~----~~- 211 (323)
T PLN00106 138 VNSTVPIAAEVLKKAGVYDPKKLFGVTT-LDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPK----VS- 211 (323)
T ss_pred ccccHHHHHHHHHHcCCCCcceEEEEec-chHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceec----cc-
Confidence 99 9999999999999999999975 999999999999999999999999999995 5999999999642 22
Q ss_pred CccCCCCCCHHHHHHHHHHHHHHHHHHHHh---hCCCChhHHHHHHHHHHHHHcC---CCceEEEEee
Q psy17689 153 NPAIGTEGDTEEFGKLHTDVVNSAYEIIRL---KGYTSWAIGLSIASLTYTLLNN---TNKIHAISTL 214 (216)
Q Consensus 153 ~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~---Kg~t~~~~a~a~~~ii~ail~~---~~~ilpvS~~ 214 (216)
++++++++|.++++++|++|++. ||+|+||+|.++++|+++|++| +++++|||.+
T Consensus 212 -------~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s~~ 272 (323)
T PLN00106 212 -------FTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACLRGLNGEADVVECSYV 272 (323)
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHHhccCCCceEEEEEEE
Confidence 33566899999999999999997 6899999999999999999995 7799999943
No 33
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=1.4e-42 Score=299.58 Aligned_cols=167 Identities=46% Similarity=0.742 Sum_probs=154.8
Q ss_pred cccCCCCCC-CceEEEcCC-ccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 3 TTNDHSSFK-GVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 3 ~~~d~~~~~-~~~v~~~~~-~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+++|+.... ..++..++| |++++|||+||+|+|.|++||++|.+++.+|++++++++++++++||++++|++|||+|+
T Consensus 45 dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~ 124 (263)
T cd00650 45 DLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDI 124 (263)
T ss_pred HHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHH
Confidence 344554443 456677777 788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~ 160 (216)
+|+++++.+|+|++||||+|| ||++|+++++|+++++++++|+++|||+||++|+|+||+++
T Consensus 125 ~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~----------------- 186 (263)
T cd00650 125 ITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYILGEHGGSQVPDWSTVR----------------- 186 (263)
T ss_pred HHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHhCCCccceEEEEEEcCCCceEeccccch-----------------
Confidence 999999999999999999999 99999999999999999999999999999999999999753
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 161 ~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
+|.++++++++|++|++.++|+|++++
T Consensus 187 -----------------------------~a~~~~~ii~ai~~~~~~~~~v~v~~~ 213 (263)
T cd00650 187 -----------------------------IATSIADLIRSLLNDEGEILPVGVRNN 213 (263)
T ss_pred -----------------------------HHHHHHHHHHHHHcCCCEEEEEEEEeC
Confidence 999999999999999999999999863
No 34
>KOG1494|consensus
Probab=100.00 E-value=5.8e-38 Score=268.05 Aligned_cols=196 Identities=26% Similarity=0.379 Sum_probs=170.9
Q ss_pred cCCCCCCCceE-EEcC---Ccc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 5 NDHSSFKGVNV-LTRL---NYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 5 ~d~~~~~~~~v-~~~~---~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
.|+++.+++.. .+.. +.+ .+++||+|||.||+||||||+|+||+..|+.|+++++..+.++||++++.++||||+
T Consensus 70 aDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVN 149 (345)
T KOG1494|consen 70 ADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVN 149 (345)
T ss_pred ccccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCccc
Confidence 46666654444 3332 223 399999999999999999999999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC-CceeEEEEccC-CCCcccceeeeeECCeeccccC
Q psy17689 80 ----ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVYGFIIGEH-GDSSVPVWSGVNVAGVNLREVN 153 (216)
Q Consensus 80 ----~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~-~~v~~~v~G~H-Gds~vp~~S~~~v~g~~l~~~~ 153 (216)
+.++++++..-|+|+|+||. |.||..|+++++++.++++| ++++.+|+|+| |.|.+|++|++. |..
T Consensus 150 stVPIaaevlKk~G~ydpkklfGV-TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~----p~~--- 221 (345)
T KOG1494|consen 150 STVPIAAEVLKKAGVYDPKKLFGV-TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCK----PPF--- 221 (345)
T ss_pred ccchHHHHHHHHcCCCCccceece-ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCC----Ccc---
Confidence 56788888889999999999 99999999999999999999 55999999999 899999999976 211
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHcC---CCceEEEEe
Q psy17689 154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNN---TNKIHAIST 213 (216)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~K---g~t~~~~a~a~~~ii~ail~~---~~~ilpvS~ 213 (216)
.+++++++.|+.++|.+|.||+++| |+.++++|+|.+++..++++. +..+.-||.
T Consensus 222 -----~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecaf 282 (345)
T KOG1494|consen 222 -----RFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAF 282 (345)
T ss_pred -----cCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeE
Confidence 2568899999999999999999987 789999999999999999874 456777764
No 35
>KOG1496|consensus
Probab=100.00 E-value=1.8e-37 Score=260.47 Aligned_cols=204 Identities=21% Similarity=0.281 Sum_probs=182.4
Q ss_pred ccccCCCCCCCceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689 2 LTTNDHSSFKGVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD 79 (216)
Q Consensus 2 ~~~~d~~~~~~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd 79 (216)
.|+|||+|+....++.++|..+ |+|.|+.|+..+.||++||+|.|++..|++|+++.+.++.+| +|+.+++|++||++
T Consensus 55 mELqD~a~PlL~~Vvattd~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaN 134 (332)
T KOG1496|consen 55 MELQDCALPLLKGVVATTDEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPAN 134 (332)
T ss_pred HHHHhhhhhHHHhhhcccChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccc
Confidence 5899999999999999888775 999999999999999999999999999999999999999999 59999999999999
Q ss_pred HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccCCCCcccceeeeeECC----eeccccC
Q psy17689 80 ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEHGDSSVPVWSGVNVAG----VNLREVN 153 (216)
Q Consensus 80 ~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~HGds~vp~~S~~~v~g----~~l~~~~ 153 (216)
+++.++.++. .+|.+++-.+ |.||++|+..+||.++|++.++|+++ |||||+.||+|+.-+++|++ +|+.+.+
T Consensus 135 TNali~~k~ApsIP~kNfs~l-TRLDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v 213 (332)
T KOG1496|consen 135 TNALILKKFAPSIPEKNFSAL-TRLDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAV 213 (332)
T ss_pred cchhHHhhhCCCCchhcchhh-hhhchhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHh
Confidence 9999998854 7998886544 99999999999999999999999997 99999999999999999975 7777775
Q ss_pred ccCCCCCCHHHH--HHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHcCCC--ceEEEEe
Q psy17689 154 PAIGTEGDTEEF--GKLHTDVVNSAYEIIRLKG-YTSWAIGLSIASLTYTLLNNTN--KIHAIST 213 (216)
Q Consensus 154 ~~~~~~~~~~~~--~~l~~~v~~~g~~ii~~Kg-~t~~~~a~a~~~ii~ail~~~~--~ilpvS~ 213 (216)
. ++.| .++++.||++|..+|+.++ ++.++.|.|+|+.++.++.... ......+
T Consensus 214 ~-------d~~wL~g~Fi~tVQkRGaavi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV 271 (332)
T KOG1496|consen 214 K-------DDAWLQGEFIETVQKRGAAVIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGV 271 (332)
T ss_pred c-------cchhhccchhhHHHhcchHhhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEee
Confidence 4 4555 6899999999999999987 4557999999999999998643 4444433
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.97 E-value=1.8e-31 Score=217.43 Aligned_cols=115 Identities=41% Similarity=0.651 Sum_probs=107.8
Q ss_pred cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccCccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy17689 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEII 180 (216)
Q Consensus 101 t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 180 (216)
|.|||+||+++||+++|++|++++++||||||++|||+||+++++|+|+.++.+.. ..++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~-~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPS-GKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTT-TSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeecccccccccccccccc-cchhHHhhhccccccEeccceee
Confidence 78999999999999999999999999999999999999999999999998876542 23678888999999999999999
Q ss_pred Hhh-CCCChhHHHHHHHHHHHHHcCCCceEEEEeeeC
Q psy17689 181 RLK-GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216 (216)
Q Consensus 181 ~~K-g~t~~~~a~a~~~ii~ail~~~~~ilpvS~~l~ 216 (216)
++| |+|+||+|.|+++++++|++|++.++|+|++++
T Consensus 80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~ 116 (174)
T PF02866_consen 80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLD 116 (174)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEE
T ss_pred eeccccCcCCHHHHHHHHHHHHhhcccccccceeccc
Confidence 999 999999999999999999999999999999863
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.94 E-value=1.1e-27 Score=189.23 Aligned_cols=97 Identities=42% Similarity=0.675 Sum_probs=87.3
Q ss_pred ccccCCCCCC-CceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 2 LTTNDHSSFK-GVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 2 ~~~~d~~~~~-~~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|++++. .+..+.+++|++++|||+||+|+|.|++||++|++++..|++|++++++++++++|+++++++|||+|+
T Consensus 44 ~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~ 123 (141)
T PF00056_consen 44 LDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV 123 (141)
T ss_dssp HHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH
T ss_pred hhhhhhhhhcccccccccccccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH
Confidence 4556665443 344556689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCEEe
Q psy17689 81 LTYVSWKLSGFPKNRVIG 98 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG 98 (216)
||+++++.+||||+||||
T Consensus 124 ~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 124 MTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp HHHHHHHHHTSSGGGEEE
T ss_pred HHHHHHHhhCcCcccCcC
Confidence 999999999999999998
No 38
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.91 E-value=6.2e-24 Score=194.84 Aligned_cols=132 Identities=20% Similarity=0.181 Sum_probs=117.7
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeE
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCT 70 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~i 70 (216)
..++..|+|.++ ++|||+||.+..+ |.|.|. -......+|+++++++++.|+++||+|+
T Consensus 59 ~~~v~~ttD~~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~ 138 (425)
T cd05197 59 DIKFEKTMDLEDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAW 138 (425)
T ss_pred CeEEEEeCCHHHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 457888999885 9999999998643 223321 2578889999999999999999999999
Q ss_pred EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689 71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNL 149 (216)
Q Consensus 71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l 149 (216)
+|++|||+|+||+++++.+ |++||||+|+. +.|+++.+|+.+|+++++|+++++| ||| ++||+++++|+|+
T Consensus 139 lin~TNP~di~t~a~~~~~--p~~rviG~c~~--~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l 210 (425)
T cd05197 139 YLNFTNPAGEVTEAVRRYV--PPEKAVGLCNV--PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDV 210 (425)
T ss_pred EEecCChHHHHHHHHHHhC--CCCcEEEECCC--HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeec
Confidence 9999999999999999985 88999999888 9999999999999999999999999 997 9999999999997
Q ss_pred cc
Q psy17689 150 RE 151 (216)
Q Consensus 150 ~~ 151 (216)
..
T Consensus 211 ~p 212 (425)
T cd05197 211 TP 212 (425)
T ss_pred HH
Confidence 73
No 39
>PRK15076 alpha-galactosidase; Provisional
Probab=99.89 E-value=2e-23 Score=191.87 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=117.0
Q ss_pred CceEEEcCC-ccccCCccEEEEcCCCC-CCCC--------------cCHHHH--------HHHhHHHHHHHHHHHHhhCC
Q psy17689 12 GVNVLTRLN-YALSEGSRIVIVTAGVR-QREG--------------ESRLSL--------VERNVNIFKGIIPNIVKYSP 67 (216)
Q Consensus 12 ~~~v~~~~~-~~~~~daDivvitag~~-~k~g--------------~~r~dl--------l~~N~~i~~~i~~~i~~~~p 67 (216)
..++..++| +++++|||+||++++++ ++++ ++|.+. +.+|+++++++++.|+++||
T Consensus 60 ~~~i~~ttD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p 139 (431)
T PRK15076 60 SAKITATTDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCP 139 (431)
T ss_pred CeEEEEECCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCC
Confidence 456777889 57799999999999997 5667 677788 99999999999999999999
Q ss_pred CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeec-cchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeEC
Q psy17689 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG-TNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVA 145 (216)
Q Consensus 68 ~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~G-t~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~ 145 (216)
+|++|++|||+|++|+.++ ++|+.||||+| +.+|+. +.+|+.+|+++++|++++.| || +.++.+.+.+
T Consensus 140 ~a~iin~tNP~divt~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~ 209 (431)
T PRK15076 140 DALLLNYVNPMAMNTWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINH----MAWYLELERK 209 (431)
T ss_pred CeEEEEcCChHHHHHHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecc----hhhheeeeEC
Confidence 9999999999999999998 77889999999 999986 77999999999999999999 99 7799999998
Q ss_pred Ceecc
Q psy17689 146 GVNLR 150 (216)
Q Consensus 146 g~~l~ 150 (216)
|+++.
T Consensus 210 G~D~~ 214 (431)
T PRK15076 210 GEDLY 214 (431)
T ss_pred CcchH
Confidence 87754
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.89 E-value=7.5e-23 Score=187.41 Aligned_cols=131 Identities=21% Similarity=0.284 Sum_probs=119.2
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHH--------------------HHHhHHHHHHHHHHHHhhCCCeE
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSL--------------------VERNVNIFKGIIPNIVKYSPQCT 70 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dl--------------------l~~N~~i~~~i~~~i~~~~p~~i 70 (216)
..+++.|+|+++ ++|||+||+++++++.++++|++. ..+|+++++++++.|+++||+|+
T Consensus 60 ~~~v~~t~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~ 139 (419)
T cd05296 60 PIKVHLTTDRREALEGADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAW 139 (419)
T ss_pred CeEEEEeCCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeE
Confidence 457888999886 999999999999988888877774 78899999999999999999999
Q ss_pred EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689 71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNL 149 (216)
Q Consensus 71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~~l 149 (216)
+|++|||+|++|+++++.+ ++||||+|+. +.|+++++|+.+|+++++++.+|+| || +-++.+++.+|+++
T Consensus 140 lin~TNP~~ivt~a~~k~~---~~rviGlc~~--~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~ 210 (419)
T cd05296 140 LINFTNPAGIVTEAVLRHT---GDRVIGLCNV--PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDV 210 (419)
T ss_pred EEEecCHHHHHHHHHHHhc---cCCEEeeCCc--HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCccc
Confidence 9999999999999999987 7899999655 4899999999999999999999999 99 77999999999876
Q ss_pred cc
Q psy17689 150 RE 151 (216)
Q Consensus 150 ~~ 151 (216)
..
T Consensus 211 ~p 212 (419)
T cd05296 211 LP 212 (419)
T ss_pred HH
Confidence 53
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.82 E-value=5.4e-19 Score=162.69 Aligned_cols=132 Identities=20% Similarity=0.290 Sum_probs=112.5
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeE
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCT 70 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~i 70 (216)
..++..|+|.++ ++|||+||.+..+ |.|.|. --.....+|+++++++++.|+++||+|+
T Consensus 59 ~~~v~~Ttdr~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~ 138 (437)
T cd05298 59 EIKFVYTTDPEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAW 138 (437)
T ss_pred CeEEEEECCHHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeE
Confidence 457888999875 9999999998643 223222 2577899999999999999999999999
Q ss_pred EEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeEC-Cee
Q psy17689 71 LLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVA-GVN 148 (216)
Q Consensus 71 iivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~-g~~ 148 (216)
+|++|||+|++|+.+++. +|+.||||+ |.--. -++..+|+.+|+++++++..+.| || +.++.+.+.. |++
T Consensus 139 lin~tNP~~~vt~~~~~~--~~~~kviGl-C~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D 210 (437)
T cd05298 139 ILNYSNPAAIVAEALRRL--FPNARILNI-CDMPI-AIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGED 210 (437)
T ss_pred EEEecCcHHHHHHHHHHH--CCCCCEEEE-CCcHH-HHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCc
Confidence 999999999999999988 888999999 55443 37888999999999999999999 99 7799999998 877
Q ss_pred ccc
Q psy17689 149 LRE 151 (216)
Q Consensus 149 l~~ 151 (216)
+..
T Consensus 211 ~~p 213 (437)
T cd05298 211 LLP 213 (437)
T ss_pred hHH
Confidence 653
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.81 E-value=1.9e-19 Score=165.33 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=117.4
Q ss_pred CceEEEcCCcc-ccCCccEEEEcCCCCCCCCcCH----------------------HHHHHHhHHHHHHHHHHHHhhCCC
Q psy17689 12 GVNVLTRLNYA-LSEGSRIVIVTAGVRQREGESR----------------------LSLVERNVNIFKGIIPNIVKYSPQ 68 (216)
Q Consensus 12 ~~~v~~~~~~~-~~~daDivvitag~~~k~g~~r----------------------~dll~~N~~i~~~i~~~i~~~~p~ 68 (216)
..++..++|++ +++|||+||++++.+..++++| .....+|+++++++++.+.++||+
T Consensus 59 ~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~ 138 (423)
T cd05297 59 PLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPD 138 (423)
T ss_pred CeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCC
Confidence 35667788965 6999999999999877777766 678889999999999999999999
Q ss_pred eEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc-cCCCCcccceeeeeECCe
Q psy17689 69 CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGV 147 (216)
Q Consensus 69 ~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G-~HGds~vp~~S~~~v~g~ 147 (216)
++++++|||+|+||+.+++.++ .|+||+|+. +.|+++.+|+.+++++++|+++++| || +.+|.+.+.+|+
T Consensus 139 a~~i~~tNPv~i~t~~~~k~~~---~rviG~c~~--~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~ 209 (423)
T cd05297 139 AWLLNYANPMAELTWALNRYTP---IKTVGLCHG--VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGE 209 (423)
T ss_pred CEEEEcCChHHHHHHHHHHhCC---CCEEEECCc--HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCc
Confidence 9999999999999999999988 699999767 8899999999999999999999999 99 779999999888
Q ss_pred ecc
Q psy17689 148 NLR 150 (216)
Q Consensus 148 ~l~ 150 (216)
++.
T Consensus 210 d~~ 212 (423)
T cd05297 210 DLY 212 (423)
T ss_pred chH
Confidence 765
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.44 E-value=4.9e-13 Score=122.17 Aligned_cols=130 Identities=25% Similarity=0.297 Sum_probs=107.8
Q ss_pred ceEEEcCCccc-cCCccEEEEcCCC------------CCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeEE
Q psy17689 13 VNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCTL 71 (216)
Q Consensus 13 ~~v~~~~~~~~-~~daDivvitag~------------~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~ii 71 (216)
.++..++|.++ ++|||+|+.+..+ |.|.|- .-.....++++++-+|++.|.++||+|++
T Consensus 63 ~kv~~ttd~~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~ 142 (442)
T COG1486 63 VKVEATTDRREALEGADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWM 142 (442)
T ss_pred eEEEEecCHHHHhcCCCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceE
Confidence 56778888875 9999999998642 444332 24677889999999999999999999999
Q ss_pred EEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC-CceeEEEEc-cCCCCcccceeeeeECCeec
Q psy17689 72 LIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP-ESVYGFIIG-EHGDSSVPVWSGVNVAGVNL 149 (216)
Q Consensus 72 ivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~-~~v~~~v~G-~HGds~vp~~S~~~v~g~~l 149 (216)
++.|||+.++|+.+.+.++ .-|++|+ |.-. .-....+|+.|++++ ++++.-+.| || +.+|..++.+|+++
T Consensus 143 lNytNP~~~vTeAv~r~~~--~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~ 214 (442)
T COG1486 143 LNYTNPAAIVTEAVRRLYP--KIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDL 214 (442)
T ss_pred EeccChHHHHHHHHHHhCC--CCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccc
Confidence 9999999999999999865 3489999 4443 346888999999975 999999999 99 77999999888664
Q ss_pred c
Q psy17689 150 R 150 (216)
Q Consensus 150 ~ 150 (216)
.
T Consensus 215 ~ 215 (442)
T COG1486 215 Y 215 (442)
T ss_pred h
Confidence 3
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.35 E-value=1e-11 Score=102.13 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=81.7
Q ss_pred CCceEEEcCCccc-cCCccEEEEcCCC------------CCCCCcC----------HHHHHHHhHHHHHHHHHHHHhhCC
Q psy17689 11 KGVNVLTRLNYAL-SEGSRIVIVTAGV------------RQREGES----------RLSLVERNVNIFKGIIPNIVKYSP 67 (216)
Q Consensus 11 ~~~~v~~~~~~~~-~~daDivvitag~------------~~k~g~~----------r~dll~~N~~i~~~i~~~i~~~~p 67 (216)
...++..++|.++ ++|||+||.+..+ |.|.|.. -.....++++++.++++.|+++||
T Consensus 57 ~~~~v~~ttd~~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~P 136 (183)
T PF02056_consen 57 ADLKVEATTDRREALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCP 136 (183)
T ss_dssp TSSEEEEESSHHHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCHHHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 3567888999886 9999999999753 5554432 578899999999999999999999
Q ss_pred CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 68 ~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v 118 (216)
+|+++++|||+.++|+.+.+..+ .-|++|+ |.-- .-+...+|+.||.
T Consensus 137 dAw~iNytNP~~~vt~a~~r~~~--~~k~vGl-Ch~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 137 DAWLINYTNPMGIVTEALSRYTP--KIKVVGL-CHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp TSEEEE-SSSHHHHHHHHHHHST--TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred CcEEEeccChHHHHHHHHHHhCC--CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence 99999999999999999998864 3589999 5544 3467778998874
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.46 E-value=1 Score=41.55 Aligned_cols=68 Identities=13% Similarity=0.196 Sum_probs=46.1
Q ss_pred ceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCC-eEEEE-EcCchhHHHHHHH
Q psy17689 13 VNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLI-VSNPVDILTYVSW 86 (216)
Q Consensus 13 ~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~-~iiiv-vtNPvd~~t~~~~ 86 (216)
.+...|+||++ ++++|+++|+.|-|.++.- - .+...+...++.|.++.+. .++++ -|=|+..-..+-+
T Consensus 62 gRl~fTtd~~~a~~~adv~fIavgTP~~~dg-~-----aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 62 GRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-S-----ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCC-C-----ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 34778999996 9999999999999987632 1 2456777777888887655 33332 2456665444433
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=90.03 E-value=3.1 Score=32.32 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=45.7
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh-HHHHHHHHhcCCCCCCEEeecc
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD-ILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd-~~t~~~~~~sg~~~~~viG~Gt 101 (216)
=.++|+|++++- .....+.++++++.+++.++ +..+++-+|+.+ -.. .++..|++ ++|+.||
T Consensus 51 e~~adii~iSsl------------~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~--~l~~~Gvd--~~~~~gt 114 (132)
T TIGR00640 51 EADVHVVGVSSL------------AGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFD--ELKEMGVA--EIFGPGT 114 (132)
T ss_pred HcCCCEEEEcCc------------hhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHH--HHHHCCCC--EEECCCC
Confidence 358899988753 23456778999999999876 445555555443 333 35667874 8999999
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
.+..
T Consensus 115 ~~~~ 118 (132)
T TIGR00640 115 PIPE 118 (132)
T ss_pred CHHH
Confidence 8876
No 47
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.96 E-value=0.99 Score=39.04 Aligned_cols=69 Identities=20% Similarity=0.279 Sum_probs=40.3
Q ss_pred eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
.+..++|++++++||+||++.- + +..+-.++...+.+++ |++++ +||=..+-...+.+..+.|
T Consensus 70 ~l~~~~~~~~~~~aDlVi~av~----e----------~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~la~~~~~~ 133 (282)
T PRK05808 70 RITGTTDLDDLKDADLVIEAAT----E----------NMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITELAAATKRP 133 (282)
T ss_pred CeEEeCCHHHhccCCeeeeccc----c----------cHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhhCCC
Confidence 4555778888999999999862 1 2333345555566775 56655 4554444333444444433
Q ss_pred CCCEEee
Q psy17689 93 KNRVIGS 99 (216)
Q Consensus 93 ~~~viG~ 99 (216)
.|++|+
T Consensus 134 -~r~ig~ 139 (282)
T PRK05808 134 -DKVIGM 139 (282)
T ss_pred -cceEEe
Confidence 456554
No 48
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.84 E-value=6.2 Score=32.80 Aligned_cols=47 Identities=9% Similarity=0.024 Sum_probs=28.2
Q ss_pred cCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 18 ~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+++.+.++++|+||++.-. ..+.++.+.+...-.+.++|-++||.+.
T Consensus 60 ~~~~ea~~~aDvVilavp~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 60 ADNAEAAKRADVVILAVPW----------------DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred eChHHHHhcCCEEEEECCH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 4445669999999998631 1122223333333234688899999753
No 49
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=77.97 E-value=6.3 Score=34.19 Aligned_cols=48 Identities=6% Similarity=0.214 Sum_probs=30.0
Q ss_pred EEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q psy17689 15 VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSN 76 (216)
Q Consensus 15 v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtN 76 (216)
+..+++++++++||+||.+... +..+.+++..++.++. |+++++..|.
T Consensus 74 i~~~~~~~~~~~aDlVieav~e--------------~~~~k~~~~~~l~~~~~~~~il~S~ts 122 (291)
T PRK06035 74 IRTSTSYESLSDADFIVEAVPE--------------KLDLKRKVFAELERNVSPETIIASNTS 122 (291)
T ss_pred cEeeCCHHHhCCCCEEEEcCcC--------------cHHHHHHHHHHHHhhCCCCeEEEEcCC
Confidence 3455677779999999998631 2334445555677764 5666554443
No 50
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=77.17 E-value=2.7 Score=34.40 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=40.0
Q ss_pred ceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc-CchhHHH----HHH
Q psy17689 13 VNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS-NPVDILT----YVS 85 (216)
Q Consensus 13 ~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt-NPvd~~t----~~~ 85 (216)
.+...++|+++ +++||+++|+.+.|..++.+ -+..-+.+.++.|.++ .++.++++=| =|+.+.. .++
T Consensus 62 ~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~il 135 (185)
T PF03721_consen 62 GRLRATTDIEEAIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPIL 135 (185)
T ss_dssp TSEEEESEHHHHHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhh
Confidence 34566788887 99999999999988765431 1234445556666666 3455555444 4655444 455
Q ss_pred HHhcC
Q psy17689 86 WKLSG 90 (216)
Q Consensus 86 ~~~sg 90 (216)
.+.++
T Consensus 136 e~~~~ 140 (185)
T PF03721_consen 136 EKRSG 140 (185)
T ss_dssp HHHCC
T ss_pred hhhcc
Confidence 55555
No 51
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=76.21 E-value=6.3 Score=34.11 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=45.0
Q ss_pred ccCCccEEEEcCCC----------------CCCCCcC---HH-----HHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 23 LSEGSRIVIVTAGV----------------RQREGES---RL-----SLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 23 ~~~daDivvitag~----------------~~k~g~~---r~-----dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
.+++||++|+|-|. |..|+.. ++ --..++...+..+...|++.+|+..||.---||
T Consensus 98 ~l~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPV 177 (251)
T PF08885_consen 98 ALEEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPV 177 (251)
T ss_pred HHHhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccc
Confidence 37899999999874 2223321 11 224678889999999999999999998888899
Q ss_pred hHHH
Q psy17689 79 DILT 82 (216)
Q Consensus 79 d~~t 82 (216)
-.+.
T Consensus 178 rl~~ 181 (251)
T PF08885_consen 178 RLIA 181 (251)
T ss_pred hhhc
Confidence 7665
No 52
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.84 E-value=14 Score=27.86 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=43.4
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcC-chhHHHHHHHHhcCCCCCCEEeecc
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSN-PVDILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtN-Pvd~~t~~~~~~sg~~~~~viG~Gt 101 (216)
=.++|+|+++... ....+.++++++.+++.+| +..+++-++ |-+... .++..|++ .+|+.||
T Consensus 48 ~~~~d~V~iS~~~------------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~--~~~~~G~d--~~~~~~~ 111 (122)
T cd02071 48 QEDVDVIGLSSLS------------GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYE--LLKEMGVA--EIFGPGT 111 (122)
T ss_pred HcCCCEEEEcccc------------hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHH--HHHHCCCC--EEECCCC
Confidence 3578888886542 2345677899999999977 544555544 433332 23457764 7899999
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
..+.
T Consensus 112 ~~~~ 115 (122)
T cd02071 112 SIEE 115 (122)
T ss_pred CHHH
Confidence 8775
No 53
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.68 E-value=7.9 Score=33.56 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=30.7
Q ss_pred eEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCch
Q psy17689 14 NVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPV 78 (216)
Q Consensus 14 ~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPv 78 (216)
.+..++|+++ +++||+||.+.- .+....+++..++.++. +++++ ++|..
T Consensus 71 ~i~~~~d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntS 121 (287)
T PRK08293 71 RITLTTDLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSS 121 (287)
T ss_pred CeEEeCCHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcc
Confidence 4456778875 899999999853 12445555556676765 45543 34443
No 54
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.23 E-value=28 Score=25.43 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=9.6
Q ss_pred HHHHHHHHhhCCCeEEEEE
Q psy17689 56 KGIIPNIVKYSPQCTLLIV 74 (216)
Q Consensus 56 ~~i~~~i~~~~p~~iiivv 74 (216)
.++.+.+.+..|+.+.+.+
T Consensus 41 ~~l~~~~~~~~pd~V~iS~ 59 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISV 59 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEc
Confidence 4444555555555555444
No 55
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.41 E-value=11 Score=29.82 Aligned_cols=50 Identities=8% Similarity=0.244 Sum_probs=34.1
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
...|+|+|..|...--.....+.+..| +.++.+.+.+..|++.+++++.|
T Consensus 66 ~~pd~Vii~~G~ND~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iiv~~~p 115 (191)
T cd01836 66 TRFDVAVISIGVNDVTHLTSIARWRKQ---LAELVDALRAKFPGARVVVTAVP 115 (191)
T ss_pred CCCCEEEEEecccCcCCCCCHHHHHHH---HHHHHHHHHhhCCCCEEEEECCC
Confidence 477999999987642222233444444 56677777777899999998865
No 56
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=73.07 E-value=11 Score=29.62 Aligned_cols=50 Identities=18% Similarity=0.430 Sum_probs=34.6
Q ss_pred CccEEEEcCCCCCCC--Cc---CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 26 GSRIVIVTAGVRQRE--GE---SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 26 daDivvitag~~~k~--g~---~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
..|+|||..|...-- +. ...+.+..| ++.+.+.+++..|++.++++|.|-
T Consensus 63 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~ii~~t~~~ 117 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQPQHVPLDEYKEN---LRKIVSHLKSLSPKTKVILITPPP 117 (199)
T ss_pred CceEEEEEecCccccCCCCCCcccHHHHHHH---HHHHHHHHHhhCCCCeEEEeCCCC
Confidence 799999999975321 11 234555555 667777888878999888888653
No 57
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.75 E-value=11 Score=32.76 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.5
Q ss_pred EEEcCCccccCCccEEEEcC
Q psy17689 15 VLTRLNYALSEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~~~daDivvita 34 (216)
+..+++++++++||+||.+.
T Consensus 72 i~~~~~~~~~~~aD~Vieav 91 (292)
T PRK07530 72 ISTATDLEDLADCDLVIEAA 91 (292)
T ss_pred eEeeCCHHHhcCCCEEEEcC
Confidence 45567888899999999975
No 58
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.78 E-value=14 Score=28.33 Aligned_cols=48 Identities=8% Similarity=0.232 Sum_probs=33.8
Q ss_pred CCccEEEEcCCCCCC-CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 25 EGSRIVIVTAGVRQR-EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 25 ~daDivvitag~~~k-~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
.+.|+|++..|...- .+. ..+. -.+-++++.+.+++.+|++.+++++-
T Consensus 39 ~~pd~vvi~~G~ND~~~~~-~~~~---~~~~~~~~i~~i~~~~p~~~ii~~~~ 87 (157)
T cd01833 39 AKPDVVLLHLGTNDLVLNR-DPDT---APDRLRALIDQMRAANPDVKIIVATL 87 (157)
T ss_pred CCCCEEEEeccCcccccCC-CHHH---HHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 578999999997642 222 2233 34556778888888899999888764
No 59
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.13 E-value=35 Score=26.52 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchhH---HH--HHHHHhcCCCCCCEEe
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVDI---LT--YVSWKLSGFPKNRVIG 98 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd~---~t--~~~~~~sg~~~~~viG 98 (216)
.++|+|.+.+-.. .+...++++.+.+++.++ +..+++-++|.-- -. .--.+..|+ ..||+
T Consensus 53 ~~~d~V~lS~~~~------------~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~--~~vf~ 118 (137)
T PRK02261 53 TDADAILVSSLYG------------HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF--DRVFP 118 (137)
T ss_pred cCCCEEEEcCccc------------cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCC--CEEEC
Confidence 4677777765432 356677888899988865 6667777776311 11 112344566 58999
Q ss_pred eccchhH
Q psy17689 99 SGTNLDS 105 (216)
Q Consensus 99 ~Gt~lds 105 (216)
.|+.+|.
T Consensus 119 ~~~~~~~ 125 (137)
T PRK02261 119 PGTDPEE 125 (137)
T ss_pred cCCCHHH
Confidence 9998886
No 60
>KOG2711|consensus
Probab=64.18 E-value=23 Score=32.26 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=50.0
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCc---------hhH
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNP---------VDI 80 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNP---------vd~ 80 (216)
+.+++..+|..+ ++||||+|+. .| - +.+.+++++|..+ .|++..|-++-= +.+
T Consensus 90 P~NvvAv~dl~ea~~dADilvf~--vP---h-----------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~l 153 (372)
T KOG2711|consen 90 PENVVAVPDLVEAAKDADILVFV--VP---H-----------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRL 153 (372)
T ss_pred CCCeEecchHHHHhccCCEEEEe--CC---h-----------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceee
Confidence 455788888765 9999999985 33 2 3455677788777 677766655432 346
Q ss_pred HHHHHHHhcCCCCCCEEeeccchh
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLD 104 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~ld 104 (216)
++.++.+..|.|-. +. +|.++-
T Consensus 154 iS~iI~~~lgI~~~-vL-~GaNiA 175 (372)
T KOG2711|consen 154 ISQIIHRALGIPCS-VL-MGANIA 175 (372)
T ss_pred hHHHHHHHhCCCce-ee-cCCchH
Confidence 77777788887765 32 444443
No 61
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.74 E-value=55 Score=25.55 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeE-EEEEcCch---hHHHH--HHHHhcCCCCCCEEe
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCT-LLIVSNPV---DILTY--VSWKLSGFPKNRVIG 98 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~i-iivvtNPv---d~~t~--~~~~~sg~~~~~viG 98 (216)
.++|+|-+.+- +..+...++++.+.+++.+...+ +++-++|+ +-... -..+..|+ .+|||
T Consensus 51 ~~adiVglS~l------------~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv--~~vF~ 116 (134)
T TIGR01501 51 TKADAILVSSL------------YGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF--DRVFA 116 (134)
T ss_pred cCCCEEEEecc------------cccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCC--CEEEC
Confidence 36787777542 23456678889999999986444 44556653 22221 12355677 58999
Q ss_pred eccchhHHHHHHHHHHHhC
Q psy17689 99 SGTNLDSMRFRVLLAQKLG 117 (216)
Q Consensus 99 ~Gt~lds~R~~~~la~~l~ 117 (216)
-||.++. .-..|-+.|+
T Consensus 117 pgt~~~~--iv~~l~~~~~ 133 (134)
T TIGR01501 117 PGTPPEV--VIADLKKDLN 133 (134)
T ss_pred cCCCHHH--HHHHHHHHhc
Confidence 9998865 3455555554
No 62
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=63.69 E-value=11 Score=29.73 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=30.4
Q ss_pred CccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC
Q psy17689 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP 67 (216)
Q Consensus 20 ~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p 67 (216)
|.+.+.++|+|++..|.|. .....+.+|..+..+|.+.+.+-.|
T Consensus 1 d~~~~~~~D~i~lpGg~pe----~~~~~l~~~~~~~~~I~~~~~~G~p 44 (158)
T PF07685_consen 1 DEELPPDADGIYLPGGYPE----LFALELSRNRGLKEAIREAAEAGGP 44 (158)
T ss_pred CCCCCCCCCEEEECCCcHH----HHHHHHHHHhCHHHHHHHHHHcCCc
Confidence 4466899999999888663 3555666787766666665555444
No 63
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=63.18 E-value=26 Score=30.14 Aligned_cols=61 Identities=16% Similarity=0.275 Sum_probs=37.0
Q ss_pred CCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHHHHHHHHhcCCCCCCE
Q psy17689 19 LNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRV 96 (216)
Q Consensus 19 ~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~t~~~~~~sg~~~~~v 96 (216)
+++++ .+++|+||++.-.+ -+.++.+.+.++ .++.+++.+.|.++....+.. . +|++++
T Consensus 60 ~~~~~~~~~~d~vilavk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~-~--~~~~~v 120 (305)
T PRK12921 60 TDPEELTGPFDLVILAVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP-Y--FGRERV 120 (305)
T ss_pred cCHHHccCCCCEEEEEeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH-h--CCcccE
Confidence 45655 48999999986432 123344455554 567888889999875443322 2 455566
Q ss_pred Ee
Q psy17689 97 IG 98 (216)
Q Consensus 97 iG 98 (216)
++
T Consensus 121 ~~ 122 (305)
T PRK12921 121 LG 122 (305)
T ss_pred EE
Confidence 63
No 64
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=62.83 E-value=17 Score=29.48 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=32.2
Q ss_pred eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEE
Q psy17689 14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLL 72 (216)
Q Consensus 14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iii 72 (216)
++..++|++++.|||+||=+.- ++.++=+++-.++.+.+ |++++.
T Consensus 66 ~i~~~~dl~~~~~adlViEai~--------------E~l~~K~~~~~~l~~~~~~~~ila 111 (180)
T PF02737_consen 66 RISFTTDLEEAVDADLVIEAIP--------------EDLELKQELFAELDEICPPDTILA 111 (180)
T ss_dssp TEEEESSGGGGCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEEE
T ss_pred hcccccCHHHHhhhheehhhcc--------------ccHHHHHHHHHHHHHHhCCCceEE
Confidence 4566789999889999876642 34566677888888986 676643
No 65
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.44 E-value=17 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.211 Sum_probs=34.2
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
.+.|+||+..|...-... . .-.+-++++.+.+++.+|++.+++++.|.
T Consensus 56 ~~pd~vii~~G~ND~~~~---~---~~~~~~~~~i~~i~~~~p~~~iil~~~~~ 103 (177)
T cd01844 56 VPADLYIIDCGPNIVGAE---A---MVRERLGPLVKGLRETHPDTPILLVSPRY 103 (177)
T ss_pred cCCCEEEEEeccCCCccH---H---HHHHHHHHHHHHHHHHCcCCCEEEEecCC
Confidence 368999999997642111 1 22455778888999999999988888654
No 66
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.61 E-value=30 Score=27.24 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=33.1
Q ss_pred CccEEEEcCCCCCC--CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 26 GSRIVIVTAGVRQR--EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 26 daDivvitag~~~k--~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
..|+|+|..|...- ......+.+..| ++.+.+.+++.+|++.++++|-|
T Consensus 67 ~pd~Vii~~G~ND~~~~~~~~~~~~~~~---l~~li~~i~~~~~~~~iil~t~~ 117 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQNWKYKDDFKKD---YETMIDSFQALPSKPKIYICYPI 117 (188)
T ss_pred CCCEEEEEcccCCCCCCCCccHHHHHHH---HHHHHHHHHHHCCCCeEEEEeCC
Confidence 57999999997642 112223444444 66778888888899888877743
No 67
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=61.54 E-value=16 Score=34.45 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=40.9
Q ss_pred eEEEcCCcc-ccCCccEEEEcCCCCCCCCc-CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEE--EcCchhHHHH
Q psy17689 14 NVLTRLNYA-LSEGSRIVIVTAGVRQREGE-SRLSLVERNVNIFKGIIPNIVKYSPQCTLLI--VSNPVDILTY 83 (216)
Q Consensus 14 ~v~~~~~~~-~~~daDivvitag~~~k~g~-~r~dll~~N~~i~~~i~~~i~~~~p~~iiiv--vtNPvd~~t~ 83 (216)
....++|++ .+++||++|||.+.|..++- .. + -.-+..-+.+.++.|.++-+++.+++ -|-|+.+...
T Consensus 65 ~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~-~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~ 136 (473)
T PLN02353 65 NLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGA-G-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEA 136 (473)
T ss_pred CEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcC-C-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHH
Confidence 356678876 49999999999999875321 00 0 01123446667777777754444333 2567765433
No 68
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=60.65 E-value=6.9 Score=39.10 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=36.7
Q ss_pred cCCccEEEEcCCCCC---CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEE-cCchhH
Q psy17689 24 SEGSRIVIVTAGVRQ---REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIV-SNPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~---k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivv-tNPvd~ 80 (216)
.++||++|++.|... .+|.+|.++-.. +--.++.+++.+.++..+++++ ++|.++
T Consensus 499 A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp--~~Q~~Li~~v~~~~~~vVvVl~~g~P~~l 557 (765)
T PRK15098 499 AKQADVVVAVVGEAQGMAHEASSRTDITIP--QSQRDLIAALKATGKPLVLVLMNGRPLAL 557 (765)
T ss_pred HhcCCEEEEEEcCCCCccccCCCcccccCC--HHHHHHHHHHHHhCcCEEEEEeCCceeec
Confidence 689999999998753 345566543221 1223455566667888777777 899997
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=60.52 E-value=5.5 Score=31.38 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=29.1
Q ss_pred eEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEc
Q psy17689 14 NVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVS 75 (216)
Q Consensus 14 ~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvt 75 (216)
.+..++|+++ +++||+||++. | ..-++++.+++.++- ++..+++++
T Consensus 56 ~i~~t~dl~~a~~~ad~Iiiav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 56 NIKATTDLEEALEDADIIIIAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp TEEEESSHHHHHTT-SEEEE-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred ccccccCHHHHhCcccEEEecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 4556788875 99999999864 2 344677888888885 444444433
No 70
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.94 E-value=44 Score=31.30 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=45.3
Q ss_pred CccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc---CchhHHHHHHHHhcCCCCCCEEeecc
Q psy17689 26 GSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS---NPVDILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 26 daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt---NPvd~~t~~~~~~sg~~~~~viG~Gt 101 (216)
+.|+|+| |+|... ++...+.++...+....|+.+++|++ .+-| +..++.++..++...+| + |
T Consensus 320 ~~DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~idglI-~-T 385 (436)
T PRK11889 320 RVDYILIDTAGKNY-----------RASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIHIDGIV-F-T 385 (436)
T ss_pred CCCEEEEeCccccC-----------cCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCCCCEEE-E-E
Confidence 5799988 677543 34455667777777778988887765 3334 34566677777778876 5 7
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
-||.
T Consensus 386 KLDE 389 (436)
T PRK11889 386 KFDE 389 (436)
T ss_pred cccC
Confidence 8887
No 71
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=59.61 E-value=30 Score=26.90 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
...|+|++..|...-......+.+..| ++.+...+++..|++.+++++-|
T Consensus 50 ~~pd~v~i~~G~ND~~~~~~~~~~~~~---~~~l~~~~~~~~p~~~vi~~~~~ 99 (174)
T cd01841 50 KNPSKVFLFLGTNDIGKEVSSNQFIKW---YRDIIEQIREEFPNTKIYLLSVL 99 (174)
T ss_pred cCCCEEEEEeccccCCCCCCHHHHHHH---HHHHHHHHHHHCCCCEEEEEeeC
Confidence 467899999987643221123344444 55677778888898888888743
No 72
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=59.30 E-value=40 Score=29.58 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=32.4
Q ss_pred EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHH
Q psy17689 16 LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDIL 81 (216)
Q Consensus 16 ~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~ 81 (216)
..++++++++++|+||++...+. ..++.+.+.+. .++.+++..+|..+..
T Consensus 63 ~~~~~~~~~~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 63 AFSTDPAALATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EeccChhhccCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 34566777899999999874321 01233444444 5778888889987654
No 73
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=59.08 E-value=20 Score=32.02 Aligned_cols=88 Identities=18% Similarity=0.236 Sum_probs=51.1
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
..+..++++++++|||+||=+. .+|..+=+++-.++.+++ |++++ .||--.+.-.-+...+.
T Consensus 69 ~~i~~~~~~~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~~~~- 131 (307)
T COG1250 69 ARITPTTDLAALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAEALK- 131 (307)
T ss_pred hhccccCchhHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHHHhC-
Confidence 3455577888999999977543 235556666777777774 67654 45544432222222222
Q ss_pred CCCCEEee------------------ccchhHHHHHHHHHHHhC
Q psy17689 92 PKNRVIGS------------------GTNLDSMRFRVLLAQKLG 117 (216)
Q Consensus 92 ~~~~viG~------------------Gt~lds~R~~~~la~~l~ 117 (216)
.|+|++|+ -|.=++...-..+++++|
T Consensus 132 rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~ig 175 (307)
T COG1250 132 RPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIG 175 (307)
T ss_pred CchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 24455554 344466555666777776
No 74
>PRK08130 putative aldolase; Validated
Probab=59.00 E-value=1e+02 Score=25.48 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=59.5
Q ss_pred CccccCCccEEEEcC-CCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHh----cCCCC-
Q psy17689 20 NYALSEGSRIVIVTA-GVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKL----SGFPK- 93 (216)
Q Consensus 20 ~~~~~~daDivvita-g~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~----sg~~~- 93 (216)
+++++.-.|++++.. |.. -.|...... .. +=..|=+..|+...++.+-|...+++.+... ..+|+
T Consensus 47 ~~~~l~~~div~vd~~g~~-~~g~~ps~E----~~----~H~~iy~~rpdv~avvH~H~~~~~a~s~~~~~~~~~~~~~~ 117 (213)
T PRK08130 47 CLGRLDPARLSKVDADGNW-LSGDKPSKE----VP----LHRAIYRNNPECGAVVHLHSTHLTALSCLGGLDPTNVLPPF 117 (213)
T ss_pred CccCCCHhHEEEECCCCCC-CCCCCCChh----HH----HHHHHHHhCCCCCEEEECCcHHHHHHHhcCccccccCCCCC
Confidence 577898899999974 322 122100000 11 1123334689999999999999888766431 12222
Q ss_pred --C--------CEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccce
Q psy17689 94 --N--------RVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139 (216)
Q Consensus 94 --~--------~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~ 139 (216)
. .++-. ...++..+...+++.++- -++.+|.+|| +..|
T Consensus 118 ~~~~~~~~g~i~v~~y-~~~g~~~la~~~~~~l~~----~~~vll~nHG---vi~~ 165 (213)
T PRK08130 118 TPYYVMRVGHVPLIPY-YRPGDPAIAEALAGLAAR----YRAVLLANHG---PVVW 165 (213)
T ss_pred ChhhhhccCccceECC-CCCChHHHHHHHHHHhcc----CCEEEEcCCC---Ceee
Confidence 1 11111 113455677777777752 3678999999 4444
No 75
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=58.85 E-value=31 Score=26.96 Aligned_cols=48 Identities=15% Similarity=0.321 Sum_probs=32.8
Q ss_pred ccEEEEcCCCCCCC---CcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 27 SRIVIVTAGVRQRE---GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 27 aDivvitag~~~k~---g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
.|+||+..|....- +.+.. .+. .-++.+.+.+++..|++.+++++.|.
T Consensus 56 pd~vii~~G~ND~~~~~~~~~~-~~~---~~~~~li~~i~~~~p~~~i~~~~~~~ 106 (169)
T cd01831 56 PDLVVINLGTNDFSTGNNPPGE-DFT---NAYVEFIEELRKRYPDAPIVLMLGPM 106 (169)
T ss_pred CCEEEEECCcCCCCCCCCCCHH-HHH---HHHHHHHHHHHHHCCCCeEEEEecCc
Confidence 89999999986421 11222 233 34567777888889999888877665
No 76
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.76 E-value=27 Score=30.38 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=37.7
Q ss_pred eEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC--CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 14 NVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS--PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 14 ~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~--p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
++..++|++++++||+|+=+.- ++.++=+++-..+.+++ |++++ +||--..-...+...+..
T Consensus 72 ~l~~~~~~~~~~~~d~ViEav~--------------E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~la~~~~~ 135 (286)
T PRK07819 72 RLRFTTDLGDFADRQLVIEAVV--------------EDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKLAAATKR 135 (286)
T ss_pred CeEeeCCHHHhCCCCEEEEecc--------------cCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHhhcCC
Confidence 4556789988999999887642 22333334444777875 56554 444333222222233333
Q ss_pred CCCCEEee
Q psy17689 92 PKNRVIGS 99 (216)
Q Consensus 92 ~~~~viG~ 99 (216)
++|++|+
T Consensus 136 -~~r~~g~ 142 (286)
T PRK07819 136 -PGRVLGL 142 (286)
T ss_pred -CccEEEE
Confidence 3455554
No 77
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.13 E-value=39 Score=26.41 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=34.2
Q ss_pred CCccEEEEcCCCCCC-CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQR-EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k-~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
...|+|+|..|.... .+....+.+. .-++.+...+.+.+|++.+++++-|
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~~~~~---~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNASEYR---QQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCCEEEEECCCcccccCCCCHHHHH---HHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467999999998642 1211123333 4466777788888899999998855
No 78
>KOG2666|consensus
Probab=56.54 E-value=1.5e+02 Score=27.11 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=40.9
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCCCCCC-----Cc-CHHHHHHHhHHHHH---------------------HHHHHHH
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQRE-----GE-SRLSLVERNVNIFK---------------------GIIPNIV 63 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~~~k~-----g~-~r~dll~~N~~i~~---------------------~i~~~i~ 63 (216)
..+...++|.+. ++.||+|+|....|.|- |+ ..+.+.+.-+..+. .|..-+.
T Consensus 63 gknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~ 142 (481)
T KOG2666|consen 63 GKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILN 142 (481)
T ss_pred CCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHh
Confidence 345566788774 99999999988776542 22 12333333333332 2333334
Q ss_pred hhCCCeEEEEEcCc
Q psy17689 64 KYSPQCTLLIVSNP 77 (216)
Q Consensus 64 ~~~p~~iiivvtNP 77 (216)
+.+|+-.+=+++||
T Consensus 143 ~n~~~i~fqilsnp 156 (481)
T KOG2666|consen 143 HNSKGIKFQILSNP 156 (481)
T ss_pred cCCCCceeEeccCh
Confidence 45788889999999
No 79
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.00 E-value=37 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.280 Sum_probs=32.7
Q ss_pred CCccEEEEcCCCCCC-CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQR-EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k-~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
...|+|++..|.... .+. ..+.+.+| +.++...+.+..|++.+++++-|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~-~~~~~~~~---l~~li~~~~~~~~~~~vi~~~~~ 96 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGT-SDEDIVAN---YRTILEKLRKHFPNIKIVVQSIL 96 (169)
T ss_pred cCCCEEEEEeeccCCCCCC-CHHHHHHH---HHHHHHHHHHHCCCCeEEEEecC
Confidence 367999999997642 232 23444444 56667777777888888888743
No 80
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=55.93 E-value=33 Score=28.02 Aligned_cols=48 Identities=13% Similarity=0.254 Sum_probs=32.1
Q ss_pred CccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 26 GSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 26 daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
..|+|||..|...-....-.+.+. .-++.+.+.+++.+|++.+++++-
T Consensus 89 ~pd~VvI~~G~ND~~~~~~~~~~~---~~l~~ii~~l~~~~P~~~Iil~~~ 136 (214)
T cd01820 89 NPKVVVLLIGTNNIGHTTTAEEIA---EGILAIVEEIREKLPNAKILLLGL 136 (214)
T ss_pred CCCEEEEEecccccCCCCCHHHHH---HHHHHHHHHHHHHCCCCeEEEEec
Confidence 589999999986421111122333 446677888888899998888773
No 81
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=55.71 E-value=34 Score=29.58 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=15.7
Q ss_pred EEEcCCccccCCccEEEEcC
Q psy17689 15 VLTRLNYALSEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~~~daDivvita 34 (216)
+..+++++++++||+||.+.
T Consensus 72 ~~~~~~~~~~~~aD~Vieav 91 (295)
T PLN02545 72 IRCTTNLEELRDADFIIEAI 91 (295)
T ss_pred eEeeCCHHHhCCCCEEEEcC
Confidence 34456788899999999975
No 82
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.61 E-value=35 Score=30.49 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=39.3
Q ss_pred eEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC
Q psy17689 14 NVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92 (216)
Q Consensus 14 ~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~ 92 (216)
++..++++++ +++||+|+-+. | +|..+=+++-..+.+++|... |+.||-..+...-+......
T Consensus 70 ~i~~~~~l~~av~~aDlViEav--p------------E~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~~- 133 (321)
T PRK07066 70 RLRFVATIEACVADADFIQESA--P------------EREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARATH- 133 (321)
T ss_pred hceecCCHHHHhcCCCEEEECC--c------------CCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcCC-
Confidence 4455677865 89999988764 2 133333444467777764433 66777665544334433333
Q ss_pred CCCEEe
Q psy17689 93 KNRVIG 98 (216)
Q Consensus 93 ~~~viG 98 (216)
|+|++|
T Consensus 134 p~R~~g 139 (321)
T PRK07066 134 PERCVV 139 (321)
T ss_pred cccEEE
Confidence 345555
No 83
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=55.01 E-value=38 Score=26.31 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=33.8
Q ss_pred CccEEEEcCCCCCC-CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 26 GSRIVIVTAGVRQR-EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 26 daDivvitag~~~k-~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
..|+|++..|...- .|.+ .+.+ ..-++++.+.+++.+|++.+++++-
T Consensus 50 ~p~~vvi~~G~ND~~~~~~-~~~~---~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 50 QPRRVVLYAGDNDLASGRT-PEEV---LRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CCCEEEEEEecCcccCCCC-HHHH---HHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 67899999997642 3333 3333 4557778888888899998888875
No 84
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.00 E-value=34 Score=31.77 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=44.1
Q ss_pred cCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC--CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeec
Q psy17689 24 SEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP--QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100 (216)
Q Consensus 24 ~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p--~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~G 100 (216)
++++|+|++ |+|.+.+..+ ++.-++++. ....+ .-.++-.|---..|-.++.+++-+|...+| +
T Consensus 279 l~~~d~ILVDTaGrs~~D~~--------~i~el~~~~---~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I-~- 345 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKE--------KIEELKELI---DVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLI-F- 345 (407)
T ss_pred hhcCCEEEEeCCCCCccCHH--------HHHHHHHHH---hccccceEEEEEecCcchHHHHHHHHHhccCCcceeE-E-
Confidence 899999999 8887754333 122223333 23322 233344444566788888999999999987 5
Q ss_pred cchhH
Q psy17689 101 TNLDS 105 (216)
Q Consensus 101 t~lds 105 (216)
|-||.
T Consensus 346 TKlDE 350 (407)
T COG1419 346 TKLDE 350 (407)
T ss_pred Ecccc
Confidence 77775
No 85
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=53.88 E-value=45 Score=28.32 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=33.0
Q ss_pred EcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHHHH
Q psy17689 17 TRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDILTY 83 (216)
Q Consensus 17 ~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~t~ 83 (216)
.+++++++.+.|+||++.-... ..+..+.++.+ .++++++.+.|-++..-.
T Consensus 50 ~~~~~~~~~~~D~iiv~vKs~~----------------~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~ 101 (293)
T TIGR00745 50 AATSPEELPPADLVIITVKAYQ----------------TEEAAALLLPLIGKNTKVLFLQNGLGHEER 101 (293)
T ss_pred cccChhhcCCCCEEEEeccchh----------------HHHHHHHhHhhcCCCCEEEEccCCCCCHHH
Confidence 3456677889999999864321 12233344444 578899999998775443
No 86
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=53.11 E-value=62 Score=25.06 Aligned_cols=67 Identities=19% Similarity=0.201 Sum_probs=44.7
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCch---hHHHH--HHHHhcCCCCCCEEe
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPV---DILTY--VSWKLSGFPKNRVIG 98 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPv---d~~t~--~~~~~sg~~~~~viG 98 (216)
.++|+|-+.+= +......++++.+.+++.+. +..+++-++|+ .-..+ -..+..|+ .+|||
T Consensus 49 ~~adiVglS~L------------~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv--~~vf~ 114 (128)
T cd02072 49 TDADAILVSSL------------YGHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGF--DRVFA 114 (128)
T ss_pred cCCCEEEEecc------------ccCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCC--CEEEC
Confidence 47888877652 22345677788889999876 77777777853 22221 22455687 47999
Q ss_pred eccchhH
Q psy17689 99 SGTNLDS 105 (216)
Q Consensus 99 ~Gt~lds 105 (216)
-||.++.
T Consensus 115 pgt~~~~ 121 (128)
T cd02072 115 PGTPPEE 121 (128)
T ss_pred cCCCHHH
Confidence 9998765
No 87
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=52.56 E-value=51 Score=27.51 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
..-++++.+.|++..|++.|++++-
T Consensus 130 ~~~l~~~l~~i~~~~p~a~I~~~gy 154 (259)
T cd01823 130 GARLKAVLDRIRERAPNARVVVVGY 154 (259)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEecc
Confidence 3457778888888999999888884
No 88
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=52.52 E-value=21 Score=30.99 Aligned_cols=72 Identities=14% Similarity=0.219 Sum_probs=51.1
Q ss_pred CCccc-cC--CccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch---hHHHHHHHHhcCCC
Q psy17689 19 LNYAL-SE--GSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFP 92 (216)
Q Consensus 19 ~~~~~-~~--daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv---d~~t~~~~~~sg~~ 92 (216)
++.+| ++ ++|++|=+.+.| |- +=+++.+.|.+++++.+|.-.+||. ++...-+++++.
T Consensus 96 ~~L~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~-- 159 (254)
T cd00762 96 GDLEDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE-- 159 (254)
T ss_pred CCHHHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC--
Confidence 35544 66 788776666544 31 2246777888899999999999997 577788888873
Q ss_pred CCCEEeeccchhHH
Q psy17689 93 KNRVIGSGTNLDSM 106 (216)
Q Consensus 93 ~~~viG~Gt~lds~ 106 (216)
-+.+|++|..-+..
T Consensus 160 G~ai~AtGspf~pv 173 (254)
T cd00762 160 GRAIFASGSPFHPV 173 (254)
T ss_pred CCEEEEECCCCCCc
Confidence 24689998876554
No 89
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=52.42 E-value=31 Score=28.93 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=35.8
Q ss_pred cccCCccEEEEcCCCCCCCC----cCHHHHHHHhHHHHHHHHHHHHhhCCC
Q psy17689 22 ALSEGSRIVIVTAGVRQREG----ESRLSLVERNVNIFKGIIPNIVKYSPQ 68 (216)
Q Consensus 22 ~~~~daDivvitag~~~k~g----~~r~dll~~N~~i~~~i~~~i~~~~p~ 68 (216)
+.++++|+||-+||.+...+ ....++...|+...+.+.+.+.+++..
T Consensus 53 ~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 53 EALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred hhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 35889999999998764322 124567788999999999999998753
No 90
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=52.35 E-value=53 Score=26.03 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=43.9
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchh
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLD 104 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~ld 104 (216)
.|+|+|+++.-. ..-...+.++.+++++++.+-+.++++-+.-.=.+...+..|++ +||+-||.+.
T Consensus 62 ~dv~vIgvSsl~------------g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~--~if~pgt~~~ 127 (143)
T COG2185 62 EDVDVIGVSSLD------------GGHLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVD--RIFGPGTPIE 127 (143)
T ss_pred cCCCEEEEEecc------------chHHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcc--eeeCCCCCHH
Confidence 567777775321 12245678899999999999888666633222224444556754 8999999876
Q ss_pred H
Q psy17689 105 S 105 (216)
Q Consensus 105 s 105 (216)
.
T Consensus 128 ~ 128 (143)
T COG2185 128 E 128 (143)
T ss_pred H
Confidence 5
No 91
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.13 E-value=46 Score=28.95 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=15.2
Q ss_pred EEEcCCccc-cCCccEEEEcC
Q psy17689 15 VLTRLNYAL-SEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~-~~daDivvita 34 (216)
+..++|+++ +++||+||++.
T Consensus 67 i~~~~~~~~~~~~aDlVi~av 87 (311)
T PRK06130 67 IRMEAGLAAAVSGADLVIEAV 87 (311)
T ss_pred eEEeCCHHHHhccCCEEEEec
Confidence 344567775 89999999975
No 92
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=51.97 E-value=26 Score=34.90 Aligned_cols=89 Identities=22% Similarity=0.316 Sum_probs=53.9
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
.++..++||++++|||+||=+. .+|.++=+++-.++.+++ |++++ .||-..+-..-+...++.
T Consensus 401 ~~i~~~~~~~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la~~~~~ 464 (737)
T TIGR02441 401 SNLTPTLDYSGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIAAVSSR 464 (737)
T ss_pred hCeEEeCCHHHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhcCC
Confidence 3566778999999999877543 235566667777888886 56544 577555332222233333
Q ss_pred CCCCEEee------------------ccchhHHHHHHHHHHHhCC
Q psy17689 92 PKNRVIGS------------------GTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 92 ~~~~viG~------------------Gt~lds~R~~~~la~~l~v 118 (216)
|+|++|+ .|.-++.-.-..+++.+|-
T Consensus 465 -p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk 508 (737)
T TIGR02441 465 -PEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGK 508 (737)
T ss_pred -ccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCC
Confidence 4566664 4555554444556666664
No 93
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=51.32 E-value=37 Score=33.70 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=42.8
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
.++..++|+++++|||+||=+. .++.++=+++-.++.+++ |+++ +.||-..+-...+...+..
T Consensus 379 ~~i~~~~~~~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~i--lasnTS~l~i~~ia~~~~~ 442 (714)
T TIGR02437 379 NGITPTLSYAGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAI--LASNTSTISISLLAKALKR 442 (714)
T ss_pred hCeEEeCCHHHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcCC
Confidence 3466778998999999988764 134556666777778886 5654 4677554322222233332
Q ss_pred CCCCEEee
Q psy17689 92 PKNRVIGS 99 (216)
Q Consensus 92 ~~~~viG~ 99 (216)
|+|++|+
T Consensus 443 -p~r~ig~ 449 (714)
T TIGR02437 443 -PENFCGM 449 (714)
T ss_pred -cccEEEE
Confidence 4556654
No 94
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=51.30 E-value=49 Score=28.30 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=32.1
Q ss_pred cCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHHHH
Q psy17689 18 RLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDILTY 83 (216)
Q Consensus 18 ~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~t~ 83 (216)
+.+.++.+++|+||++.... . +.++.+.+.++ .++..++.+.|.++....
T Consensus 58 ~~~~~~~~~~d~vila~k~~----~------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~ 108 (304)
T PRK06522 58 ADDPAELGPQDLVILAVKAY----Q------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEE 108 (304)
T ss_pred CCChhHcCCCCEEEEecccc----c------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence 34555569999999986422 1 23334444444 577889999999875443
No 95
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=51.17 E-value=18 Score=28.53 Aligned_cols=52 Identities=21% Similarity=0.416 Sum_probs=33.0
Q ss_pred cEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 28 RIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 28 Divvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
|.||+++|..++-|..-.-+--.+.+++....+.+.+..++-++++++++.+
T Consensus 1 ~~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~ 52 (188)
T TIGR03310 1 DAIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEAD 52 (188)
T ss_pred CeEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHH
Confidence 5688888876654422111111457888888888888777766666665543
No 96
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=50.60 E-value=40 Score=32.04 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=17.1
Q ss_pred eEEEcCCccccCCccEEEEcC
Q psy17689 14 NVLTRLNYALSEGSRIVIVTA 34 (216)
Q Consensus 14 ~v~~~~~~~~~~daDivvita 34 (216)
++..+++++++++||+||-+.
T Consensus 72 ~i~~~~~~~~l~~aDlVIEav 92 (503)
T TIGR02279 72 RLIPVTDLHALADAGLVIEAI 92 (503)
T ss_pred ccEEeCCHHHhCCCCEEEEcC
Confidence 355678899999999998875
No 97
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=50.52 E-value=66 Score=23.66 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchhHHHHHHHHhcCCCCCCEEee
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~ 99 (216)
.+.|+|.++.... .+.+-++++++.+++.+| +..+++.++|....-. .++..|++ .++..
T Consensus 49 ~~pdvV~iS~~~~------------~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~-~~~~~G~D--~~~~~ 109 (119)
T cd02067 49 EDADAIGLSGLLT------------THMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFK-FLKEIGVD--AYFGP 109 (119)
T ss_pred cCCCEEEEecccc------------ccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHH-HHHHcCCe--EEECC
Confidence 4667777765422 245667788888888877 7777777777665433 34555653 44444
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=50.28 E-value=14 Score=37.02 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=35.3
Q ss_pred cCCccEEEEcCCCCC---CCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEc-CchhH
Q psy17689 24 SEGSRIVIVTAGVRQ---REGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVS-NPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~---k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvt-NPvd~ 80 (216)
.++||+||+++|... .+|.+|.++..-. --.++++++.+.++ ..++++.+ +|+++
T Consensus 485 A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~--~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l 544 (779)
T PLN03080 485 AKRADFVVVVAGLDLSQETEDHDRVSLLLPG--KQMDLISSVASVSKKPVVLVLTGGGPVDV 544 (779)
T ss_pred hccCCEEEEEeCCCccccccCCCcccccCCc--cHHHHHHHHHhhcCCCEEEEEeCCceeec
Confidence 789999999998653 3455676554322 12356666777655 45555554 79987
No 99
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=50.23 E-value=39 Score=33.51 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=42.4
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
.++..++|+++++|||+||=+. | ++.++=+++-.++.+++ |+++ +.||-..+-...+...+..
T Consensus 379 ~~i~~~~~~~~~~~aDlViEav--~------------E~l~~K~~vf~~l~~~~~~~~i--lasNTSsl~i~~la~~~~~ 442 (715)
T PRK11730 379 SSIRPTLDYAGFERVDVVVEAV--V------------ENPKVKAAVLAEVEQKVREDTI--LASNTSTISISLLAKALKR 442 (715)
T ss_pred hCeEEeCCHHHhcCCCEEEecc--c------------CcHHHHHHHHHHHHhhCCCCcE--EEEcCCCCCHHHHHhhcCC
Confidence 3466678999999999987653 1 34555566677777886 5544 4677555332222233333
Q ss_pred CCCCEEee
Q psy17689 92 PKNRVIGS 99 (216)
Q Consensus 92 ~~~~viG~ 99 (216)
|+|++|+
T Consensus 443 -p~r~~g~ 449 (715)
T PRK11730 443 -PENFCGM 449 (715)
T ss_pred -CccEEEE
Confidence 4566664
No 100
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=49.17 E-value=49 Score=29.53 Aligned_cols=59 Identities=10% Similarity=0.282 Sum_probs=38.7
Q ss_pred eEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhH-----HHHHHH
Q psy17689 14 NVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDI-----LTYVSW 86 (216)
Q Consensus 14 ~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~-----~t~~~~ 86 (216)
.+..++|.++ ++++|+||++.- ..-++++.++++.+ .++..++.++|-.+. +..++.
T Consensus 64 ~i~~t~d~~~a~~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~ 127 (341)
T PRK12439 64 TLRATTDFAEAANCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIE 127 (341)
T ss_pred CeEEECCHHHHHhcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHH
Confidence 3455677764 899999999752 22455556666655 577788899987763 444554
Q ss_pred Hh
Q psy17689 87 KL 88 (216)
Q Consensus 87 ~~ 88 (216)
+.
T Consensus 128 ~~ 129 (341)
T PRK12439 128 EV 129 (341)
T ss_pred HH
Confidence 43
No 101
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.15 E-value=52 Score=29.15 Aligned_cols=61 Identities=7% Similarity=0.052 Sum_probs=33.6
Q ss_pred cccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCCCCCCEEee
Q psy17689 22 ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99 (216)
Q Consensus 22 ~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~ 99 (216)
+.+++||+||-+.- +|..+=+++-..+.+.+ |++++ .||-..+...-+...... |+|++|+
T Consensus 75 ~a~~~aD~ViEav~--------------E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~-p~r~~g~ 136 (314)
T PRK08269 75 DALADADLVFEAVP--------------EVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAH-PERFLNA 136 (314)
T ss_pred HHhccCCEEEECCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCC-cccEEEE
Confidence 45999999988752 12333334444477774 66666 666555443333333332 3455554
No 102
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=48.94 E-value=42 Score=33.20 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=42.5
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
.++..++|+++++|||+||=+. .++.++=+++-.++.+++ |++++ .||-..+-..-+.....
T Consensus 371 ~~i~~~~~~~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la~~~~- 433 (699)
T TIGR02440 371 ALITGTTDYRGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIAAAAS- 433 (699)
T ss_pred cCeEEeCChHHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHHHhcC-
Confidence 3566778999999999987654 134566667777888886 55444 56654432222222233
Q ss_pred CCCCEEee
Q psy17689 92 PKNRVIGS 99 (216)
Q Consensus 92 ~~~~viG~ 99 (216)
.|+|++|+
T Consensus 434 ~p~r~~g~ 441 (699)
T TIGR02440 434 RPENVIGL 441 (699)
T ss_pred CcccEEEE
Confidence 24566654
No 103
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=48.92 E-value=53 Score=29.63 Aligned_cols=62 Identities=8% Similarity=0.162 Sum_probs=40.4
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcC-----chhHHHHH
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSN-----PVDILTYV 84 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtN-----Pvd~~t~~ 84 (216)
++.+..+.|.++ +++||+||+.. | ..-+++++++++.+ .++.+++.+|- ....++.+
T Consensus 56 p~~l~at~Dl~~a~~~ad~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~sei 119 (329)
T COG0240 56 PPNLKATTDLAEALDGADIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEI 119 (329)
T ss_pred CcccccccCHHHHHhcCCEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHH
Confidence 456677888886 88899999963 2 35566677777655 57777777772 23344444
Q ss_pred HHHhc
Q psy17689 85 SWKLS 89 (216)
Q Consensus 85 ~~~~s 89 (216)
+++..
T Consensus 120 i~e~l 124 (329)
T COG0240 120 IEEEL 124 (329)
T ss_pred HHHHc
Confidence 44443
No 104
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=48.73 E-value=25 Score=30.99 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=48.5
Q ss_pred CCccc-cC--CccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch---hHHHHHHHHhcCCC
Q psy17689 19 LNYAL-SE--GSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFP 92 (216)
Q Consensus 19 ~~~~~-~~--daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv---d~~t~~~~~~sg~~ 92 (216)
++.+| ++ ++|++|=+.+.| |- +=+++.+.+.+++++.+|.-.+||. ++...-+++++.
T Consensus 95 ~~L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~-- 158 (279)
T cd05312 95 KSLLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD-- 158 (279)
T ss_pred CCHHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc--
Confidence 34554 66 778776655533 31 2246777888899999999999997 577777777762
Q ss_pred CCCEEeeccchhH
Q psy17689 93 KNRVIGSGTNLDS 105 (216)
Q Consensus 93 ~~~viG~Gt~lds 105 (216)
-+.+|++|+-.+-
T Consensus 159 G~ai~ATGsPf~p 171 (279)
T cd05312 159 GRALFASGSPFPP 171 (279)
T ss_pred CCEEEEeCCCCCC
Confidence 1358888865443
No 105
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=48.29 E-value=41 Score=30.36 Aligned_cols=48 Identities=13% Similarity=0.250 Sum_probs=30.5
Q ss_pred CceEEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS 75 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt 75 (216)
+..+..++|.++ +++||+||++. | ...+++++++++.+ .++.+++.++
T Consensus 67 p~~i~at~dl~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 67 PANLVAVPDLVEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI 116 (342)
T ss_pred CCCeEEECCHHHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 345667788876 89999999873 2 24455555556555 3455555555
No 106
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=47.83 E-value=25 Score=27.93 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=31.4
Q ss_pred ceEEEcCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 13 VNVLTRLNYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 13 ~~v~~~~~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
..+..+.|.+ .+++||+|..+.=.+... .+|.+.+..-.+ +.=-.+.+...+|++++ .-.=|++
T Consensus 59 ~~i~~~~~~~e~l~~aDvvy~~~~~s~~~-~e~~~~~~~~~~-y~v~~~~m~~a~~~~i~-mH~LP~~ 123 (158)
T PF00185_consen 59 GKITITDDIEEALKGADVVYTDRWQSMGD-KERFKRLEKFKP-YQVTEELMERAKPDAIF-MHPLPAN 123 (158)
T ss_dssp TEEEEESSHHHHHTT-SEEEEESSSCTTS-GGHHHHHHHHGG-GSBSHHHHHTSSTT-EE-EESSS--
T ss_pred CCeEEEeCHHHhcCCCCEEEEcCcccccc-hHHHHHHHHhcC-CccCHHHHHhcCCCcEE-EeCCCCC
Confidence 4556678885 599999987764332212 345544433333 22222333344677644 4454643
No 107
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.72 E-value=77 Score=29.16 Aligned_cols=70 Identities=21% Similarity=0.191 Sum_probs=43.1
Q ss_pred ccCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCC-eEEEEEc--CchhHHHHHHHHhcCCCCCCEEe
Q psy17689 23 LSEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVS--NPVDILTYVSWKLSGFPKNRVIG 98 (216)
Q Consensus 23 ~~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~-~iiivvt--NPvd~~t~~~~~~sg~~~~~viG 98 (216)
.+.+.|+|+| |+|...+ |..-+.++-..+....|+ -.++|++ .=.+.+..++.+++.++...+|
T Consensus 251 ~~~~~DlVLIDTaGr~~~-----------~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I- 318 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-----------DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI- 318 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-----------CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE-
Confidence 3689999999 7775432 222234444444444433 3444443 2244566888888888888887
Q ss_pred eccchhH
Q psy17689 99 SGTNLDS 105 (216)
Q Consensus 99 ~Gt~lds 105 (216)
+ |-||.
T Consensus 319 ~-TKlDe 324 (388)
T PRK12723 319 F-TKLDE 324 (388)
T ss_pred E-EeccC
Confidence 5 88887
No 108
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.11 E-value=1e+02 Score=26.84 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=41.3
Q ss_pred CccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc---CchhHHHHHHHHhcCCCCCCEEeecc
Q psy17689 26 GSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS---NPVDILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 26 daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt---NPvd~~t~~~~~~sg~~~~~viG~Gt 101 (216)
+.|+|+| |+|...+ +...++++.+.+....|+-+++|++ .+.|+. .++.++..++...+| . |
T Consensus 154 ~~D~ViIDt~Gr~~~-----------~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~-~~~~~f~~~~~~~~I-~-T 219 (270)
T PRK06731 154 RVDYILIDTAGKNYR-----------ASETVEEMIETMGQVEPDYICLTLSASMKSKDMI-EIITNFKDIHIDGIV-F-T 219 (270)
T ss_pred CCCEEEEECCCCCcC-----------CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH-HHHHHhCCCCCCEEE-E-E
Confidence 6799998 6775432 2233444444445557877777764 344444 466666778888876 5 8
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
-||.
T Consensus 220 KlDe 223 (270)
T PRK06731 220 KFDE 223 (270)
T ss_pred eecC
Confidence 8887
No 109
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=46.68 E-value=88 Score=26.43 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=30.6
Q ss_pred EEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 15 VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 15 v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
++.....++.+.+||||++. | +.....+++++...+ .+-++|=.|||.+
T Consensus 49 i~~~~~~dA~~~aDVVvLAV--P----------~~a~~~v~~~l~~~~----~~KIvID~tnp~~ 97 (211)
T COG2085 49 ITGGSNEDAAALADVVVLAV--P----------FEAIPDVLAELRDAL----GGKIVIDATNPIE 97 (211)
T ss_pred cccCChHHHHhcCCEEEEec--c----------HHHHHhHHHHHHHHh----CCeEEEecCCCcc
Confidence 44444556799999999984 2 122334444444333 3678899999964
No 110
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=46.62 E-value=1.2e+02 Score=30.32 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchh-HHHHHHHHhcCCCCCCEEeeccc
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVD-ILTYVSWKLSGFPKNRVIGSGTN 102 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd-~~t~~~~~~sg~~~~~viG~Gt~ 102 (216)
.++|+|+|++-. ....+.+..+++.+++.+. +.++++-++|.. -. -.++..|++ .+|..|+.
T Consensus 632 ~~a~ivvlcs~d------------~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~~~~~~~--~~l~~aGvD--~~i~~g~d 695 (714)
T PRK09426 632 NDVHVVGVSSLA------------AGHKTLVPALIEALKKLGREDIMVVVGGVIPPQDY--DFLYEAGVA--AIFGPGTV 695 (714)
T ss_pred cCCCEEEEeccc------------hhhHHHHHHHHHHHHhcCCCCcEEEEeCCCChhhH--HHHHhCCCC--EEECCCCC
Confidence 688999997642 2345678999999999975 577888888332 23 224666764 78999998
Q ss_pred hhH
Q psy17689 103 LDS 105 (216)
Q Consensus 103 lds 105 (216)
+..
T Consensus 696 ~~~ 698 (714)
T PRK09426 696 IAD 698 (714)
T ss_pred HHH
Confidence 776
No 111
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=45.95 E-value=35 Score=27.65 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=29.6
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+++||.+++.-.... +.. ..-++.+.+.+.+++|+..+++++|=.|+
T Consensus 76 ~~~ad~illVfD~t~-----~~S-----f~~~~~w~~~i~~~~~~~piilVGNK~DL 122 (189)
T cd04121 76 SRGAQGIILVYDITN-----RWS-----FDGIDRWIKEIDEHAPGVPKILVGNRLHL 122 (189)
T ss_pred hcCCCEEEEEEECcC-----HHH-----HHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 467787777655432 111 11223455666667788888999998886
No 112
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=44.84 E-value=67 Score=28.15 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=39.6
Q ss_pred cCCccEEEEcCCCCCC--CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH---HHHHHHHhc
Q psy17689 24 SEGSRIVIVTAGVRQR--EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI---LTYVSWKLS 89 (216)
Q Consensus 24 ~~daDivvitag~~~k--~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~---~t~~~~~~s 89 (216)
-+++|++++=.|.-.. -|.....-+..-+..+.++.+...+.+|+.+++...-|... +-|++.+..
T Consensus 168 ~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~ 238 (268)
T PF09370_consen 168 EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTK 238 (268)
T ss_dssp HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-T
T ss_pred HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCC
Confidence 5789999987765332 22233334566789999999999999999999999888653 455555554
No 113
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=44.72 E-value=52 Score=26.40 Aligned_cols=48 Identities=19% Similarity=0.363 Sum_probs=30.7
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+++||.++++-.... |..+ . | +.+.+.+.+.+++|+..+++++|=.|+
T Consensus 74 ~~~ad~~ilvyDit~-----~~Sf-~-~--~~~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 74 YPDSDAVLICFDISR-----PETL-D-S--VLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred cCCCCEEEEEEECCC-----HHHH-H-H--HHHHHHHHHHHHCCCCCEEEEeEChhh
Confidence 677888877765432 2211 1 1 224455666677788888999999996
No 114
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=44.55 E-value=1.2e+02 Score=27.97 Aligned_cols=78 Identities=19% Similarity=0.321 Sum_probs=59.3
Q ss_pred HhHHHHHHHHHHHHhhCCCeEEEEEc--CchhHHHHHHHHhcCCCCCCEEeeccchhH--HHHHHHHHHHhCCCCCceeE
Q psy17689 50 RNVNIFKGIIPNIVKYSPQCTLLIVS--NPVDILTYVSWKLSGFPKNRVIGSGTNLDS--MRFRVLLAQKLGLSPESVYG 125 (216)
Q Consensus 50 ~N~~i~~~i~~~i~~~~p~~iiivvt--NPvd~~t~~~~~~sg~~~~~viG~Gt~lds--~R~~~~la~~l~v~~~~v~~ 125 (216)
....+++.+++.+++.+.+..++.++ .|.++++.+. +..|+ ++|+=|.... -.++..|...++..+.+-.+
T Consensus 259 ~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~-~a~~~----vvGsPT~~~~~~p~i~~~l~~v~~~~~~~k~~ 333 (388)
T COG0426 259 NTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEIL-DAKGL----VVGSPTINGGAHPPIQTALGYVLALAPKNKLA 333 (388)
T ss_pred CHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHh-hcceE----EEecCcccCCCCchHHHHHHHHHhccCcCceE
Confidence 34677888999999999998887776 4667777654 44443 7788664222 45788888999999998889
Q ss_pred EEEccCC
Q psy17689 126 FIIGEHG 132 (216)
Q Consensus 126 ~v~G~HG 132 (216)
-++|.+|
T Consensus 334 ~vfgS~G 340 (388)
T COG0426 334 GVFGSYG 340 (388)
T ss_pred EEEeccC
Confidence 9999997
No 115
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.49 E-value=56 Score=32.41 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCC
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGF 91 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~ 91 (216)
.++..++|+++++|||+||=+. .+|.++=+++-.++.+++ |++++ .||-..+....+......
T Consensus 376 ~~i~~~~~~~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~la~~~~~ 439 (708)
T PRK11154 376 ALISGTTDYRGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQIAAAAAR 439 (708)
T ss_pred hcEEEeCChHHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHHHhcCc
Confidence 3567778998999999877653 245666777888888885 67655 466555333223333333
Q ss_pred CCCCEEee------------------ccchhHHHHHHHHHHHhCCCC
Q psy17689 92 PKNRVIGS------------------GTNLDSMRFRVLLAQKLGLSP 120 (216)
Q Consensus 92 ~~~~viG~------------------Gt~lds~R~~~~la~~l~v~~ 120 (216)
|+|++|+ .|.-++.-.-..+++.+|-.|
T Consensus 440 -p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p 485 (708)
T PRK11154 440 -PEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP 485 (708)
T ss_pred -ccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 3456654 455555444445556666543
No 116
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=44.21 E-value=62 Score=25.24 Aligned_cols=48 Identities=8% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCccEEEEcCCCCCCCC-cCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQREG-ESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k~g-~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
.+.|+|||..|...... ....+.+..+ ++.+.+.++ .|++.++++|.|
T Consensus 66 ~~~d~vii~~G~ND~~~~~~~~~~~~~~---~~~~i~~i~--~~~~~vil~~~~ 114 (185)
T cd01832 66 LRPDLVTLLAGGNDILRPGTDPDTYRAD---LEEAVRRLR--AAGARVVVFTIP 114 (185)
T ss_pred cCCCEEEEeccccccccCCCCHHHHHHH---HHHHHHHHH--hCCCEEEEecCC
Confidence 57899999998764321 3333334444 344555555 466677777754
No 117
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=43.83 E-value=51 Score=26.34 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=32.7
Q ss_pred cCCccEEEEcCCCCCC---------C-CcCHHH-HHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQR---------E-GESRLS-LVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k---------~-g~~r~d-ll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
..+.|+|+|..|...- + +..+.. -...-..-++++...+++.+|++.+++++
T Consensus 66 ~~~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~ 128 (204)
T cd04506 66 LKKADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVG 128 (204)
T ss_pred cccCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 3489999999986521 0 111111 11222344677888899999999888876
No 118
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=43.27 E-value=76 Score=27.69 Aligned_cols=20 Identities=15% Similarity=-0.019 Sum_probs=15.5
Q ss_pred EEEcCCccc-cCCccEEEEcC
Q psy17689 15 VLTRLNYAL-SEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~-~~daDivvita 34 (216)
+..+.++++ +++||+|+.+.
T Consensus 70 i~~~~~~~~a~~~ad~Vi~av 90 (308)
T PRK06129 70 IRVTDSLADAVADADYVQESA 90 (308)
T ss_pred eEEECcHHHhhCCCCEEEECC
Confidence 455678875 89999998875
No 119
>PRK10867 signal recognition particle protein; Provisional
Probab=42.92 E-value=1.2e+02 Score=28.40 Aligned_cols=92 Identities=24% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch--hHHHHHHHHhc-CCCCCCEEeec
Q psy17689 25 EGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV--DILTYVSWKLS-GFPKNRVIGSG 100 (216)
Q Consensus 25 ~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv--d~~t~~~~~~s-g~~~~~viG~G 100 (216)
.+.|+||| |+|.... +...+.++..-.....|+.+++|+..=. |.+ ..+..+. .++...+| .
T Consensus 182 ~~~DvVIIDTaGrl~~-----------d~~lm~eL~~i~~~v~p~evllVlda~~gq~av-~~a~~F~~~~~i~giI-l- 247 (433)
T PRK10867 182 NGYDVVIVDTAGRLHI-----------DEELMDELKAIKAAVNPDEILLVVDAMTGQDAV-NTAKAFNEALGLTGVI-L- 247 (433)
T ss_pred cCCCEEEEeCCCCccc-----------CHHHHHHHHHHHHhhCCCeEEEEEecccHHHHH-HHHHHHHhhCCCCEEE-E-
Confidence 46788888 6774321 1223333322222336888877766322 222 2222222 34445554 3
Q ss_pred cchh-HHHHHHH--HHHHhCCCCCceeEEEEccCCC
Q psy17689 101 TNLD-SMRFRVL--LAQKLGLSPESVYGFIIGEHGD 133 (216)
Q Consensus 101 t~ld-s~R~~~~--la~~l~v~~~~v~~~v~G~HGd 133 (216)
|-+| +.|.-.. ++..+++| |.....||+=+
T Consensus 248 TKlD~~~rgG~alsi~~~~~~P---I~fig~Ge~v~ 280 (433)
T PRK10867 248 TKLDGDARGGAALSIRAVTGKP---IKFIGTGEKLD 280 (433)
T ss_pred eCccCcccccHHHHHHHHHCcC---EEEEeCCCccc
Confidence 7788 3443333 44566665 45566688743
No 120
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=42.68 E-value=1.4e+02 Score=22.77 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=21.0
Q ss_pred hhHHHHHHHHhcCCCCCCEEeec---cchhHHHHHHHHHHHhCC
Q psy17689 78 VDILTYVSWKLSGFPKNRVIGSG---TNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 78 vd~~t~~~~~~sg~~~~~viG~G---t~lds~R~~~~la~~l~v 118 (216)
.+.|...+.+. |+|.++|+--. +..+.+++...+-+..+.
T Consensus 56 a~~~~~~l~~~-gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~ 98 (155)
T PF02698_consen 56 AEAMRDYLIEL-GVPEERIILEPKSTNTYENARFSKRLLKERGW 98 (155)
T ss_dssp HHHHHHHHHHT----GGGEEEE----SHHHHHHHHHHHHHT-SS
T ss_pred HHHHHHHHHhc-ccchheeEccCCCCCHHHHHHHHHHHHHhhcC
Confidence 45677777666 89988886322 445555555555555554
No 121
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=42.50 E-value=80 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.125 Sum_probs=36.9
Q ss_pred cCCccEEEEcCCCCCCCC-cCHHHHHHHhHHHHHHHHHHHHhhCCC
Q psy17689 24 SEGSRIVIVTAGVRQREG-ESRLSLVERNVNIFKGIIPNIVKYSPQ 68 (216)
Q Consensus 24 ~~daDivvitag~~~k~g-~~r~dll~~N~~i~~~i~~~i~~~~p~ 68 (216)
++++|+|+-+|+...-.+ ..+..+..-|+.-.+.+.+...+.+-.
T Consensus 64 ~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk 109 (280)
T PF01073_consen 64 LEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVK 109 (280)
T ss_pred hcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999998643334 467889999999999999999987644
No 122
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.38 E-value=64 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCccEEEEcCCCCCCC-C-cCHHHHHHHhHHHHHHHHHHHHhhC-----CCeEEEEEcCc
Q psy17689 25 EGSRIVIVTAGVRQRE-G-ESRLSLVERNVNIFKGIIPNIVKYS-----PQCTLLIVSNP 77 (216)
Q Consensus 25 ~daDivvitag~~~k~-g-~~r~dll~~N~~i~~~i~~~i~~~~-----p~~iiivvtNP 77 (216)
...|+|+|..|...-- + ....+.+..| ++++...+++.+ |+..+++++-|
T Consensus 78 ~~pd~vii~lGtND~~~~~~~~~~~~~~~---l~~lv~~i~~~~~~~~~~~~~iil~~pp 134 (208)
T cd01839 78 SPLDLVIIMLGTNDLKSYFNLSAAEIAQG---LGALVDIIRTAPIEPGMPAPKILIVAPP 134 (208)
T ss_pred CCCCEEEEeccccccccccCCCHHHHHHH---HHHHHHHHHhccccccCCCCCEEEEeCC
Confidence 5789999999986421 1 1123455545 446666777765 78888888754
No 123
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=42.22 E-value=58 Score=25.86 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=32.0
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
+++||.++++-.... +..+ . .+.+.+.+.+.+++|+..+++++|=.|+-
T Consensus 70 ~~~a~~~ilvfdit~-----~~Sf-~---~~~~~w~~~i~~~~~~~~iilVgnK~DL~ 118 (178)
T cd04131 70 YPDSDAVLICFDISR-----PETL-D---SVLKKWRGEIQEFCPNTKVLLVGCKTDLR 118 (178)
T ss_pred cCCCCEEEEEEECCC-----hhhH-H---HHHHHHHHHHHHHCCCCCEEEEEEChhhh
Confidence 678888887765432 2111 1 22345566677788888899999999963
No 124
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=42.03 E-value=66 Score=30.56 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=16.5
Q ss_pred EEEcCCccccCCccEEEEcC
Q psy17689 15 VLTRLNYALSEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~~~daDivvita 34 (216)
+..+.+++++++||+||-+.
T Consensus 75 i~~~~~~~~~~~aDlViEav 94 (507)
T PRK08268 75 LRPVEALADLADCDLVVEAI 94 (507)
T ss_pred eEEeCCHHHhCCCCEEEEcC
Confidence 56677899999999988864
No 125
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.22 E-value=82 Score=27.12 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=15.8
Q ss_pred EEEcCCcc-ccCCccEEEEcCC
Q psy17689 15 VLTRLNYA-LSEGSRIVIVTAG 35 (216)
Q Consensus 15 v~~~~~~~-~~~daDivvitag 35 (216)
+..+.+++ .+++||+|+.+..
T Consensus 69 i~~~~~~~~~~~~aD~Vi~avp 90 (288)
T PRK09260 69 LSYSLDLKAAVADADLVIEAVP 90 (288)
T ss_pred eEEeCcHHHhhcCCCEEEEecc
Confidence 44566786 5999999998753
No 126
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=40.98 E-value=27 Score=26.29 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHcCCCceEEEEe
Q psy17689 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213 (216)
Q Consensus 159 ~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~~~~~ilpvS~ 213 (216)
.++..+...|...|+++..+++.++++..|.--.--..+-..|+++.++.+-|+.
T Consensus 32 ~i~~~q~~~i~~~v~~rv~~~lgg~~s~ay~~~~~~~k~f~~i~~~lk~~F~V~s 86 (116)
T PF10552_consen 32 PIDPGQQKEIQKAVKSRVYELLGGKGSPAYKDKSFRRKLFSDIYRDLKRHFGVPS 86 (116)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchhhhhHHhHHHHHHHHHHHHHHhCCch
Confidence 3667778899999999999999999888886644455566667776665555544
No 127
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=40.78 E-value=52 Score=30.09 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=33.4
Q ss_pred EEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc
Q psy17689 15 VLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS 75 (216)
Q Consensus 15 v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt 75 (216)
+..++++++ +++||+||++.+.|..+.. . -+...+.+..+.+.++ .+..+++..|
T Consensus 64 l~~~~~~~~~~~~advvii~vpt~~~~~~-~-----~d~~~v~~~~~~i~~~l~~g~lvi~~S 120 (411)
T TIGR03026 64 LRATTDYEDAIRDADVIIICVPTPLKEDG-S-----PDLSYVESAAETIAKHLRKGATVVLES 120 (411)
T ss_pred eEEECCHHHHHhhCCEEEEEeCCCCCCCC-C-----cChHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 445667775 9999999999988764321 1 1334444555556555 4555555444
No 128
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=40.48 E-value=1.4e+02 Score=24.37 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh--HHHHHHHHhcCCCCCCEEeecc
Q psy17689 25 EGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD--ILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 25 ~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd--~~t~~~~~~sg~~~~~viG~Gt 101 (216)
+++|+|+| |+|...+ +...+.++..-+....|.-+++|++=... .+..+......++...+| . |
T Consensus 82 ~~~D~vlIDT~Gr~~~-----------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lI-l-T 148 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPR-----------DEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLI-L-T 148 (196)
T ss_dssp TTSSEEEEEE-SSSST-----------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEE-E-E
T ss_pred cCCCEEEEecCCcchh-----------hHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEE-E-E
Confidence 56899999 7775421 12222333333333377777777764332 222333344455566776 5 8
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
-||.
T Consensus 149 KlDe 152 (196)
T PF00448_consen 149 KLDE 152 (196)
T ss_dssp STTS
T ss_pred eecC
Confidence 8887
No 129
>PRK02628 nadE NAD synthetase; Reviewed
Probab=40.39 E-value=1.3e+02 Score=29.72 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCchhHH--HHHHHHh---cCCCCCCEEeeccch------hHHHHHHHHHHHhCCCCC
Q psy17689 53 NIFKGIIPNIVKYSPQCTLLIVSNPVDIL--TYVSWKL---SGFPKNRVIGSGTNL------DSMRFRVLLAQKLGLSPE 121 (216)
Q Consensus 53 ~i~~~i~~~i~~~~p~~iiivvtNPvd~~--t~~~~~~---sg~~~~~viG~Gt~l------ds~R~~~~la~~l~v~~~ 121 (216)
.++..+.+.+++.+.++++|=+|-=.|.. ..++.++ .|.++.+|+|+ ++. .+......+|+.+|++..
T Consensus 347 ~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v-~mp~~~ss~~s~~~a~~la~~LGi~~~ 425 (679)
T PRK02628 347 IQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAY-TMPGFATTDRTKNNAVALMKALGVTAR 425 (679)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEE-ECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 35556667777778999999999999954 3444455 47778899877 443 455677779999999876
Q ss_pred ceeE
Q psy17689 122 SVYG 125 (216)
Q Consensus 122 ~v~~ 125 (216)
.+.-
T Consensus 426 ~i~I 429 (679)
T PRK02628 426 EIDI 429 (679)
T ss_pred EEEc
Confidence 6553
No 130
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=40.25 E-value=1.1e+02 Score=26.03 Aligned_cols=47 Identities=19% Similarity=0.449 Sum_probs=18.9
Q ss_pred HHHHHHhhCCCeEEEEEcCchhHHHHHH-HHhcCCCCCCEEeeccchhH
Q psy17689 58 IIPNIVKYSPQCTLLIVSNPVDILTYVS-WKLSGFPKNRVIGSGTNLDS 105 (216)
Q Consensus 58 i~~~i~~~~p~~iiivvtNPvd~~t~~~-~~~sg~~~~~viG~Gt~lds 105 (216)
++.++++.+|++ ++..++|.+....+- .+..|+.+.+++..++.++.
T Consensus 182 ~~~~l~~~~~d~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (343)
T PF13458_consen 182 LVQQLKSAGPDV-VVLAGDPADAAAFLRQLRQLGLKPPRIPLFGTSLDD 229 (343)
T ss_dssp HHHHHHHTTTSE-EEEESTHHHHHHHHHHHHHTTGCSCTEEEEEGGGSS
T ss_pred HHHHHhhcCCCE-EEEeccchhHHHHHHHHHhhccccccceeeccccCc
Confidence 444444445554 333334444332221 12334444444444444443
No 131
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.74 E-value=60 Score=29.61 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=17.6
Q ss_pred CceEEEcCCccc-cCCccEEEEcC
Q psy17689 12 GVNVLTRLNYAL-SEGSRIVIVTA 34 (216)
Q Consensus 12 ~~~v~~~~~~~~-~~daDivvita 34 (216)
+..+..++|.++ +++||+||++.
T Consensus 78 p~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 78 PDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred CCceEEecCHHHHHhcCCEEEEEc
Confidence 456677788765 99999988864
No 132
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=39.72 E-value=1.7e+02 Score=23.34 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCCCC--CCEEeeccc---hhHHHHHHHHHHHhCCCCCceeEEEE
Q psy17689 55 FKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGFPK--NRVIGSGTN---LDSMRFRVLLAQKLGLSPESVYGFII 128 (216)
Q Consensus 55 ~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~~~--~~viG~Gt~---lds~R~~~~la~~l~v~~~~v~~~v~ 128 (216)
+..+.+.+.+.. ....+.++||..........+..|+.. ..+++.... -....+-..+.+++|++|+++ .++
T Consensus 77 ~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~--l~i 154 (205)
T TIGR01454 77 FPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDA--VMV 154 (205)
T ss_pred CCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhhe--EEE
Confidence 334444444442 345788999976665555556666643 456665221 112334445668889988764 677
Q ss_pred ccC
Q psy17689 129 GEH 131 (216)
Q Consensus 129 G~H 131 (216)
|.+
T Consensus 155 gD~ 157 (205)
T TIGR01454 155 GDA 157 (205)
T ss_pred cCC
Confidence 865
No 133
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=39.57 E-value=1.4e+02 Score=24.76 Aligned_cols=60 Identities=12% Similarity=0.152 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCchhH--HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHH
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVDI--LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLA 113 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPvd~--~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la 113 (216)
+..-..++++.+.+.+-..+=+-.++|... +..+.. .++..-++|.||.++..+++..++
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~---~~~~~~~iGaGTV~~~~~~~~a~~ 81 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVK---ALGDRALIGAGTVLSPEQVDRLAD 81 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHH---HcCCCcEEeEEecCCHHHHHHHHH
Confidence 456677889999999999888888888643 333322 345457899999999988876543
No 134
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=38.31 E-value=1.2e+02 Score=22.06 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=21.9
Q ss_pred cCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
-.+||++|| |.++..+. -.++++.+.+..+...|+.++++.+
T Consensus 34 ~e~AD~iiiNTC~V~~~A----------e~k~~~~i~~l~~~~~~~~~ivv~G 76 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESA----------EQKSRNRIRKLKKLKKPGAKIVVTG 76 (98)
T ss_pred cccCCEEEEEcCCCCcHH----------HHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 478998888 45543211 1233333333333334887776654
No 135
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=38.06 E-value=81 Score=29.24 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEc-CchhHHHHHHHHhcCCCCCCEEeeccch
Q psy17689 54 IFKGIIPNIVKYSPQCTLLIVS-NPVDILTYVSWKLSGFPKNRVIGSGTNL 103 (216)
Q Consensus 54 i~~~i~~~i~~~~p~~iiivvt-NPvd~~t~~~~~~sg~~~~~viG~Gt~l 103 (216)
+.+++...+.+.+.+-+.|++| |=.|=-.-...+..|.+ .-.||+||.|
T Consensus 277 ~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L 326 (405)
T COG1488 277 LSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNL 326 (405)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhh
Confidence 3344445555555444555555 44443333333334444 4455555554
No 136
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=37.05 E-value=2.1e+02 Score=23.97 Aligned_cols=52 Identities=17% Similarity=0.130 Sum_probs=36.5
Q ss_pred cCC--ccEEEEcCCCCC--CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEG--SRIVIVTAGVRQ--REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~d--aDivvitag~~~--k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
+++ +|+||-+|+... .....-...+..|+.-...+++.+.+...+..++.+|
T Consensus 69 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 69 FTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred HhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 444 899999988542 1223345677889998999999998876655566554
No 137
>KOG0781|consensus
Probab=36.97 E-value=50 Score=31.59 Aligned_cols=95 Identities=21% Similarity=0.355 Sum_probs=60.6
Q ss_pred cCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccc
Q psy17689 24 SEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTN 102 (216)
Q Consensus 24 ~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~ 102 (216)
=.+.|||+| |||.- ..|.+.|..+...++...|+-++.|- +-.+|. -.
T Consensus 464 ~~gfDVvLiDTAGR~-----------~~~~~lm~~l~k~~~~~~pd~i~~vg-------------------ealvg~-ds 512 (587)
T KOG0781|consen 464 NQGFDVVLIDTAGRM-----------HNNAPLMTSLAKLIKVNKPDLILFVG-------------------EALVGN-DS 512 (587)
T ss_pred hcCCCEEEEeccccc-----------cCChhHHHHHHHHHhcCCCceEEEeh-------------------hhhhCc-HH
Confidence 467888888 77732 35778889999888888899766552 123455 45
Q ss_pred hhH-HHHHHHHHHHhCCCCCceeEEEEccC---CCCcccceeeeeECCeeccc
Q psy17689 103 LDS-MRFRVLLAQKLGLSPESVYGFIIGEH---GDSSVPVWSGVNVAGVNLRE 151 (216)
Q Consensus 103 lds-~R~~~~la~~l~v~~~~v~~~v~G~H---Gds~vp~~S~~~v~g~~l~~ 151 (216)
+|. ..|+..++..- .|+.+.++++--- +|-.=...|-+++-|.|+.-
T Consensus 513 v~q~~~fn~al~~~~--~~r~id~~~ltk~dtv~d~vg~~~~m~y~~~~pi~f 563 (587)
T KOG0781|consen 513 VDQLKKFNRALADHS--TPRLIDGILLTKFDTVDDKVGAAVSMVYITGKPILF 563 (587)
T ss_pred HHHHHHHHHHHhcCC--CccccceEEEEeccchhhHHHHHhhheeecCCceEE
Confidence 555 34666665543 6777888776532 33222355666777777653
No 138
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=36.96 E-value=73 Score=24.76 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=29.5
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
++++|.||.++|.+.+ + ...++.+.+.+++.+.. .++.+|
T Consensus 58 l~~~d~vi~~~~~~~~------~-----~~~~~~~~~a~~~~~~~-~~v~~s 97 (183)
T PF13460_consen 58 LKGADAVIHAAGPPPK------D-----VDAAKNIIEAAKKAGVK-RVVYLS 97 (183)
T ss_dssp HTTSSEEEECCHSTTT------H-----HHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred hhhcchhhhhhhhhcc------c-----ccccccccccccccccc-cceeee
Confidence 8899999999986654 1 67788888888888644 344444
No 139
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=36.95 E-value=52 Score=24.90 Aligned_cols=49 Identities=22% Similarity=0.401 Sum_probs=32.3
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCC-CeEEEEEcCchhHHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP-QCTLLIVSNPVDILT 82 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p-~~iiivvtNPvd~~t 82 (216)
++++|.+|++..... + ....-++.+.+.+.++.+ +..+++++|-.|.--
T Consensus 69 ~~~~~~~ii~fd~~~-----~-----~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 69 YRNSDAIIIVFDVTD-----E-----ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HTTESEEEEEEETTB-----H-----HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred ccccccccccccccc-----c-----ccccccccccccccccccccccceeeeccccccc
Confidence 778888888765432 1 233445577777777776 677888888777543
No 140
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=36.71 E-value=1e+02 Score=23.68 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=26.0
Q ss_pred CccEEEEcCCCCCC-CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 26 GSRIVIVTAGVRQR-EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 26 daDivvitag~~~k-~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
+.|+|+|..|.... .+.+ .+.+..| ++++.+.+++.++. +++++
T Consensus 64 ~pd~v~i~~G~ND~~~~~~-~~~~~~~---l~~li~~~~~~~~~--vil~~ 108 (177)
T cd01822 64 KPDLVILELGGNDGLRGIP-PDQTRAN---LRQMIETAQARGAP--VLLVG 108 (177)
T ss_pred CCCEEEEeccCcccccCCC-HHHHHHH---HHHHHHHHHHCCCe--EEEEe
Confidence 78999999987642 2333 3334444 55666667666444 44444
No 141
>KOG0093|consensus
Probab=36.62 E-value=80 Score=25.61 Aligned_cols=50 Identities=34% Similarity=0.513 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHhhC-CCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689 51 NVNIFKGIIPNIVKYS-PQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~-p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v 118 (216)
...-+.+++.+|+.|+ -++-+|+++|-||+ +.+|+|.. .|-+. ++++||.
T Consensus 108 Sf~svqdw~tqIktysw~naqvilvgnKCDm-----------d~eRvis~------e~g~~-l~~~LGf 158 (193)
T KOG0093|consen 108 SFNSVQDWITQIKTYSWDNAQVILVGNKCDM-----------DSERVISH------ERGRQ-LADQLGF 158 (193)
T ss_pred HHHHHHHHHHHheeeeccCceEEEEecccCC-----------ccceeeeH------HHHHH-HHHHhCh
Confidence 3456788889999997 58889999998874 56787744 44444 7788886
No 142
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=36.34 E-value=51 Score=21.61 Aligned_cols=40 Identities=28% Similarity=0.372 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeecccc
Q psy17689 106 MRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREV 152 (216)
Q Consensus 106 ~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~ 152 (216)
.++...+++.+|++++++...+ -+|... .|+ ++|+++.+.
T Consensus 22 ~~it~~l~~~lg~p~~~v~V~i-~e~~~~---~w~---~gg~~~~~~ 61 (64)
T PRK01964 22 REVTEAISATLDVPKERVRVIV-NEVPSS---HWG---VAGVPKSEL 61 (64)
T ss_pred HHHHHHHHHHhCcChhhEEEEE-EEcChH---Hee---ECCEEHHHc
Confidence 3466778889999999998665 455321 565 577777654
No 143
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=35.45 E-value=84 Score=29.25 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCchhHH--HHHHHHhc-CCCCCCEEeeccchhHHHHHHHHHHHhCCCCCcee
Q psy17689 53 NIFKGIIPNIVKYSPQCTLLIVSNPVDIL--TYVSWKLS-GFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124 (216)
Q Consensus 53 ~i~~~i~~~i~~~~p~~iiivvtNPvd~~--t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~ 124 (216)
.-+.++...|.++.|+.+ ++.|.-+. +..+.+.. .+.+++|+.+|-.|.. ..+..|.+.+|++..+..
T Consensus 174 ~~~~~~l~~L~~~~P~~L---~g~pS~l~~LA~~~~~~~l~~~~k~ii~~~E~l~~-~~r~~Ie~~fg~~V~~~Y 244 (430)
T TIGR02304 174 APFQAHIKRLNQRKPSII---VAPPSVLRALALEVMEGELTIKPKKVISVAEVLEP-QDRELIRNVFKNTVHQIY 244 (430)
T ss_pred cCHHHHHHHHHHhCCCEE---EEcHHHHHHHHHHHHhcCCCCCceEEEEccCCCCH-HHHHHHHHHhCCCeeEcc
Confidence 447889999999999974 45566544 33333211 3678899999888875 477889999998777654
No 144
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=35.36 E-value=51 Score=31.87 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=28.5
Q ss_pred HHhcCCCCCCEEeeccchhHHHHH---HHHHHHhCCCCCce
Q psy17689 86 WKLSGFPKNRVIGSGTNLDSMRFR---VLLAQKLGLSPESV 123 (216)
Q Consensus 86 ~~~sg~~~~~viG~Gt~lds~R~~---~~la~~l~v~~~~v 123 (216)
-+..|+| +|+-.|+-.|+.|+- ..||+.||++..+.
T Consensus 456 c~~lGIP--pVLd~GqCnD~~r~~~la~aLae~lgvdI~dL 494 (576)
T COG1151 456 GDILGIP--RVLDFGQCNDIYRIIVLALALAEVLGLDINDL 494 (576)
T ss_pred ccccCCC--ccccccccchHHHHHHHHHHHHHHhCCCCccc
Confidence 3567999 589999999999875 56889999976553
No 145
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.93 E-value=1.7e+02 Score=21.06 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeecc-chhHHHHHHHHHHHhCCCCCceeEEEEccCC
Q psy17689 57 GIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGT-NLDSMRFRVLLAQKLGLSPESVYGFIIGEHG 132 (216)
Q Consensus 57 ~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt-~lds~R~~~~la~~l~v~~~~v~~~v~G~HG 132 (216)
-++..+++.+.+..++-...|.+-+...+.+. .+ +++|+.+ ...+...-..+++...-...++...+-|.|.
T Consensus 19 ~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~---~p-d~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 19 YLAAYLRKAGHEVDILDANVPPEELVEALRAE---RP-DVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT---TC-SEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred HHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC---CC-cEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 36677777889888776666666666555544 22 6788866 5555555566666665555555655555553
No 146
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=34.55 E-value=1e+02 Score=29.15 Aligned_cols=53 Identities=28% Similarity=0.285 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhH
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDS 105 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds 105 (216)
..+.+++-+.+.+.+.+-+-|++||-.|.-.-.-.+..|.+.. .||+||.|-+
T Consensus 269 ~~l~~~vr~~ld~~G~~~~kIi~S~gLde~~i~~l~~~g~~id-~fGvGt~L~~ 321 (464)
T PRK09243 269 AYLSKKVRKMLDEAGFTDTKIVASNDLDEYTIASLKLQGAPID-GFGVGTKLVT 321 (464)
T ss_pred HHHHHHHHHHHHHCCCCCcEEEEeCCCCHHHHHHHHhCCCCce-EEEcCccccC
Confidence 4555666666666664334488888877433222245676554 8899998754
No 147
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=34.34 E-value=1.5e+02 Score=25.94 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=34.6
Q ss_pred ccEEEEcCCCCCC--CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 27 SRIVIVTAGVRQR--EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 27 aDivvitag~~~k--~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
.|+||-+|+.+.. ........+..|+.....+.+.+.+.+....++.+|.
T Consensus 76 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 76 PEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 5999999986432 1223466778899888999998887663345666554
No 148
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=34.27 E-value=3.5e+02 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=33.8
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689 43 SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT 82 (216)
Q Consensus 43 ~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t 82 (216)
||...+.++.+++.+.+..+.+..|+-.+++..-|-....
T Consensus 193 SR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~ 232 (373)
T PF02684_consen 193 SRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEE 232 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHH
Confidence 6888999999999999999999999998887765544433
No 149
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=34.14 E-value=19 Score=29.98 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=31.6
Q ss_pred cCCccEEEEcCCCCCCCCc--------CHHHHHHHhHHHHHHHHHHHHhhCCCeE-EEEEcCchhHHH
Q psy17689 24 SEGSRIVIVTAGVRQREGE--------SRLSLVERNVNIFKGIIPNIVKYSPQCT-LLIVSNPVDILT 82 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~--------~r~dll~~N~~i~~~i~~~i~~~~p~~i-iivvtNPvd~~t 82 (216)
.++||++|+..|.+..+|. .|.++-. -.--.++.+.+.+.+.+.+ +++..||.++.-
T Consensus 83 ~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l--~~~q~~li~~v~~~~~~~Ivvv~~~~P~~l~~ 148 (227)
T PF01915_consen 83 AKEADVVIVFVGRPSGEGNDNNTEGESDRSDLAL--PANQQELIKAVAAAGKKVIVVVNSGNPYDLDP 148 (227)
T ss_dssp HHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBC--CCHHHHHHHHHHHHHSCEEEEEE-SSGGCGHC
T ss_pred hhcCCEEEEeccccccccccccccccCCcccccc--hhhHHHHHHHHHHhcCCeEEEEecCCccccHH
Confidence 6789999998883333332 1111100 1223456666666654444 456689999853
No 150
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=33.45 E-value=97 Score=24.68 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=32.0
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
+++||.+|++-.... |.. +. | +.+.+.+.+++++++..+++++|=+|+.
T Consensus 70 ~~~a~~~ilvyd~~~-----~~S-f~-~--~~~~w~~~i~~~~~~~piilvgnK~Dl~ 118 (176)
T cd04133 70 YRGADVFVLAFSLIS-----RAS-YE-N--VLKKWVPELRHYAPNVPIVLVGTKLDLR 118 (176)
T ss_pred cCCCcEEEEEEEcCC-----HHH-HH-H--HHHHHHHHHHHhCCCCCEEEEEeChhhc
Confidence 678888888765432 222 21 1 1234556677777888899999999974
No 151
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.76 E-value=1.3e+02 Score=27.93 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=39.5
Q ss_pred CCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC---chhHHHHHHHHhcCCCCCCEEeec
Q psy17689 25 EGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN---PVDILTYVSWKLSGFPKNRVIGSG 100 (216)
Q Consensus 25 ~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN---Pvd~~t~~~~~~sg~~~~~viG~G 100 (216)
.++|+|+| |+|.... +...+.++..-.....|+-.++|++. +.|+ ..++.++..++...+| .
T Consensus 284 ~~~D~VLIDTAGr~~~-----------d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~-~~i~~~f~~l~i~glI-~- 349 (407)
T PRK12726 284 NCVDHILIDTVGRNYL-----------AEESVSEISAYTDVVHPDLTCFTFSSGMKSADV-MTILPKLAEIPIDGFI-I- 349 (407)
T ss_pred CCCCEEEEECCCCCcc-----------CHHHHHHHHHHhhccCCceEEEECCCcccHHHH-HHHHHhcCcCCCCEEE-E-
Confidence 36899888 7775431 22333344333334467766665542 2443 3566667778888887 5
Q ss_pred cchhH
Q psy17689 101 TNLDS 105 (216)
Q Consensus 101 t~lds 105 (216)
|-||.
T Consensus 350 TKLDE 354 (407)
T PRK12726 350 TKMDE 354 (407)
T ss_pred EcccC
Confidence 88887
No 152
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=32.75 E-value=2.3e+02 Score=25.60 Aligned_cols=71 Identities=14% Similarity=0.054 Sum_probs=48.5
Q ss_pred CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH--HHHHHhcCCCCCCEEeeccchhHHHHHH
Q psy17689 39 REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT--YVSWKLSGFPKNRVIGSGTNLDSMRFRV 110 (216)
Q Consensus 39 k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t--~~~~~~sg~~~~~viG~Gt~lds~R~~~ 110 (216)
.|-|+|.+.. +-...=+++++.+.+.+.+-+++==.-|-++-+ -++....|++++.++|.|+.+|...++.
T Consensus 127 ~pAMt~~e~~-~a~~~G~~~~~~~~~~g~dll~~GEmGiGnTTtAaAvl~aL~g~~~~~~vg~Gsg~~~~~~~~ 199 (333)
T TIGR03160 127 GPAMTREEAE-AALEAGIEAADEAADSGADLLGTGEMGIGNTTPAAALLAALTGLPPEEVVGRGTGLDDEGLAR 199 (333)
T ss_pred CCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCcCchhhHHHHHHHHHHhCcCHHHhcCCCCCCChHHHHH
Confidence 4567776553 456667778888888778855544334555443 2344566999999999999999866654
No 153
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=32.65 E-value=68 Score=29.93 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=30.0
Q ss_pred ceEEEcCCccccCCccEEEEcCCCCCCC-CcCHHHHHHHhHHHHHHHHHHHHhh
Q psy17689 13 VNVLTRLNYALSEGSRIVIVTAGVRQRE-GESRLSLVERNVNIFKGIIPNIVKY 65 (216)
Q Consensus 13 ~~v~~~~~~~~~~daDivvitag~~~k~-g~~r~dll~~N~~i~~~i~~~i~~~ 65 (216)
-+...|+|+++++.||+++||.=.|.+. .+.-+.++. .-++.|.++
T Consensus 71 g~lraTtd~~~l~~~dv~iI~VPTPl~~~~~pDls~v~-------~aa~sIa~~ 117 (436)
T COG0677 71 GKLRATTDPEELKECDVFIICVPTPLKKYREPDLSYVE-------SAARSIAPV 117 (436)
T ss_pred CCceEecChhhcccCCEEEEEecCCcCCCCCCChHHHH-------HHHHHHHHh
Confidence 3456789999999999999997666433 233334433 344555555
No 154
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=32.62 E-value=1.6e+02 Score=25.10 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=34.7
Q ss_pred CccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 26 GSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 26 daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
++|+||-+|+.+..+.......+..|+.....+.+.+.+.+- .++..|
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 689999999865433344556788899888889998888753 355544
No 155
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=32.21 E-value=1.3e+02 Score=23.91 Aligned_cols=30 Identities=7% Similarity=0.121 Sum_probs=16.4
Q ss_pred HHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 48 VERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 48 l~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
+..+-+...+....+.+.-|+-.++-.-+|
T Consensus 54 lG~~~~~~~~~~~~l~~~yP~l~ivg~~~g 83 (172)
T PF03808_consen 54 LGGSEEVLEKAAANLRRRYPGLRIVGYHHG 83 (172)
T ss_pred EeCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 333445556666666666666555544444
No 156
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=32.19 E-value=1.6e+02 Score=24.92 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=36.2
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
.+.|+||-+|+.+.....+....+..|+.-...+.+.+.+.+. .++.+|-
T Consensus 65 ~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS 114 (314)
T TIGR02197 65 GKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASS 114 (314)
T ss_pred CCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEcc
Confidence 4799999999865433334566778899989999998888764 3555553
No 157
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=32.17 E-value=1.9e+02 Score=24.64 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCchh--HHHHHHHHhcCCCCCCEEeeccc------hhHHHHHHHHHHHhCCCC
Q psy17689 55 FKGIIPNIVKYSPQCTLLIVSNPVD--ILTYVSWKLSGFPKNRVIGSGTN------LDSMRFRVLLAQKLGLSP 120 (216)
Q Consensus 55 ~~~i~~~i~~~~p~~iiivvtNPvd--~~t~~~~~~sg~~~~~viG~Gt~------lds~R~~~~la~~l~v~~ 120 (216)
+..+-+.+++.+.+++++-+|==+| +.+.++.++.| +++|+|. .. -.+..-...+++.+|++.
T Consensus 6 ~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg--~~~v~~v-~mp~~~~~~~~~~~A~~la~~lgi~~ 76 (242)
T PF02540_consen 6 VDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALG--PDNVLAV-IMPSGFSSEEDIEDAKELAEKLGIEY 76 (242)
T ss_dssp HHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHG--GGEEEEE-EEESSTSTHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhh--hcccccc-ccccccCChHHHHHHHHHHHHhCCCe
Confidence 3344455556677888888888887 34555556653 4577665 22 122334455777787654
No 158
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=31.96 E-value=13 Score=32.97 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=30.3
Q ss_pred cCCCCCCEE-----eeccchhHHHHHHHHHHHhCCCCCceeEE-EEccC-CC
Q psy17689 89 SGFPKNRVI-----GSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEH-GD 133 (216)
Q Consensus 89 sg~~~~~vi-----G~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~H-Gd 133 (216)
..|.|++|. |+|-. + +...+|...+++--.|++. .+||| ||
T Consensus 147 g~WAPknVLFyGppGTGKT---m-~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 147 GDWAPKNVLFYGPPGTGKT---M-MAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred cccCcceeEEECCCCccHH---H-HHHHHhcccCCceEEechHHHHHHHhhh
Confidence 467888876 33332 2 4556888889999999997 99999 76
No 159
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=31.92 E-value=91 Score=28.93 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=20.6
Q ss_pred EEEcCCccccCCccEEEEcCCCCCCC
Q psy17689 15 VLTRLNYALSEGSRIVIVTAGVRQRE 40 (216)
Q Consensus 15 v~~~~~~~~~~daDivvitag~~~k~ 40 (216)
...+++++.+++||+++++.+.|.+.
T Consensus 65 l~~t~~~~~~~~advvii~Vptp~~~ 90 (425)
T PRK15182 65 LKFTSEIEKIKECNFYIITVPTPINT 90 (425)
T ss_pred eeEEeCHHHHcCCCEEEEEcCCCCCC
Confidence 34566777899999999999988643
No 160
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.77 E-value=94 Score=24.05 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=29.8
Q ss_pred CCccEEEEcCCCCCCC-C---cCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 25 EGSRIVIVTAGVRQRE-G---ESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 25 ~daDivvitag~~~k~-g---~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
...|+|++..|....- + ..-.+.+..| ++.+...+.+..|++.+++++.
T Consensus 60 ~~~d~v~l~~G~ND~~~~~~~~~~~~~~~~~---l~~~v~~~~~~~~~~~ii~~~p 112 (191)
T cd01834 60 AKPDVVSIMFGINDSFRGFDDPVGLEKFKTN---LRRLIDRLKNKESAPRIVLVSP 112 (191)
T ss_pred CCCCEEEEEeecchHhhcccccccHHHHHHH---HHHHHHHHHcccCCCcEEEECC
Confidence 3479999998865311 1 1223444444 5566677766678877777764
No 161
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=31.69 E-value=1.3e+02 Score=25.61 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=6.5
Q ss_pred ccccCCccEEEEc
Q psy17689 21 YALSEGSRIVIVT 33 (216)
Q Consensus 21 ~~~~~daDivvit 33 (216)
.+.++++|+||++
T Consensus 40 ~~~~~~~Dlvvla 52 (258)
T PF02153_consen 40 IEAVEDADLVVLA 52 (258)
T ss_dssp HHHGGCCSEEEE-
T ss_pred HhHhcCCCEEEEc
Confidence 3345555655554
No 162
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=31.66 E-value=3.4e+02 Score=23.76 Aligned_cols=105 Identities=8% Similarity=0.031 Sum_probs=60.0
Q ss_pred cCCccEEEEcCCCCCCC--CcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHH----HHHHhcCCCCCCEE
Q psy17689 24 SEGSRIVIVTAGVRQRE--GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTY----VSWKLSGFPKNRVI 97 (216)
Q Consensus 24 ~~daDivvitag~~~k~--g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~----~~~~~sg~~~~~vi 97 (216)
++++|+||=+|+.+..+ .+...+....|+.-...+.+.+++.+.. .++.+|-. .+... ...+..-..|....
T Consensus 88 ~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~-~vyg~~~~~~~~e~~~~~p~~~Y 165 (348)
T PRK15181 88 CKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASS-STYGDHPDLPKIEERIGRPLSPY 165 (348)
T ss_pred hhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeech-HhhCCCCCCCCCCCCCCCCCChh
Confidence 68899999999864322 2345677889999999999999888654 34444311 00000 00011111122334
Q ss_pred eeccchhHHHHHHHHHHHhCCCCCceeEE-EEccC
Q psy17689 98 GSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEH 131 (216)
Q Consensus 98 G~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~H 131 (216)
|. +-+...++-...++..+++...++-. |.|.+
T Consensus 166 ~~-sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 166 AV-TKYVNELYADVFARSYEFNAIGLRYFNVFGRR 199 (348)
T ss_pred hH-HHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence 44 33333444344455668888788775 88865
No 163
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=31.62 E-value=1.4e+02 Score=21.97 Aligned_cols=54 Identities=11% Similarity=0.305 Sum_probs=32.9
Q ss_pred ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 23 LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 23 ~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
...+.|+|++..|...--... ..-...-.+-++.+.+.+.+..|++.+++++-|
T Consensus 62 ~~~~~d~vil~~G~ND~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~ 115 (187)
T cd00229 62 LKDKPDLVIIELGTNDLGRGG-DTSIDEFKANLEELLDALRERAPGAKVILITPP 115 (187)
T ss_pred ccCCCCEEEEEeccccccccc-ccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 377889999998865321100 011122345566677777777788878777754
No 164
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=31.31 E-value=20 Score=25.16 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=25.7
Q ss_pred Ccc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 20 NYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 20 ~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
+++ .+++||+||++.- | ..+.++++.+....++.++|-++||
T Consensus 54 ~~~~~~~~advvilav~----p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVK----P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp EHHHHHHHTSEEEE-S-----G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred ChHHhhccCCEEEEEEC----H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 444 4788999999752 2 2234455555455677788877775
No 165
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=30.77 E-value=28 Score=27.98 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=14.1
Q ss_pred CCccc-cCCccEEEEcCCCC
Q psy17689 19 LNYAL-SEGSRIVIVTAGVR 37 (216)
Q Consensus 19 ~~~~~-~~daDivvitag~~ 37 (216)
.+.++ ++.|||||.++|.|
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~ 90 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKP 90 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSST
T ss_pred CcccceeeeccEEeeeeccc
Confidence 34444 99999999999975
No 166
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=30.59 E-value=1.1e+02 Score=27.29 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=38.7
Q ss_pred hCCCeEEEEEcCchhHHHHHHH--HhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC
Q psy17689 65 YSPQCTLLIVSNPVDILTYVSW--KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH 131 (216)
Q Consensus 65 ~~p~~iiivvtNPvd~~t~~~~--~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H 131 (216)
..+.|+=+=-+||....-++.+ +..|+++-+|+-+ ..||-.+++.+.. .|. .+.++=+|.+
T Consensus 248 ~~~~gvR~DSGd~~~~~~~~r~~l~~~G~~~~~Iv~S-dgld~~~i~~l~~--~g~---~~d~fGvGt~ 310 (327)
T cd01570 248 YRLVGVRIDSGDLAYLSKEARKMLDEAGLTKVKIVAS-NDLDEYTIAALNA--QGA---PIDAFGVGTR 310 (327)
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHHHCCCCCcEEEEe-CCCCHHHHHHHHH--CCC---eeEEEecCcc
Confidence 3455666666788887766654 3458888888855 6778888777653 233 2345544544
No 167
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=30.42 E-value=1.3e+02 Score=27.73 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=21.9
Q ss_pred CCeEEEEEcCchhHHHHHHH--HhcCC-CCCCEEeeccchhHHHHHHHH
Q psy17689 67 PQCTLLIVSNPVDILTYVSW--KLSGF-PKNRVIGSGTNLDSMRFRVLL 112 (216)
Q Consensus 67 p~~iiivvtNPvd~~t~~~~--~~sg~-~~~~viG~Gt~lds~R~~~~l 112 (216)
++|+=+=-++|....-.+.+ +..|+ |..|+|=.-..||-.|+..+.
T Consensus 274 ~~GvR~DSGD~~~~~~k~r~~~~~~Gi~p~~K~iv~Sd~Lde~~i~~L~ 322 (377)
T cd01401 274 FDGVRHDSGDPFEWGEKAIAHYEKLGIDPKTKTLVFSDGLDVEKALELY 322 (377)
T ss_pred CCEEeeCCCCHHHHHHHHHHHHHHcCCCCCCcEEEEcCCCCHHHHHHHH
Confidence 45555555566555444333 33454 445522222456655555543
No 168
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=30.36 E-value=17 Score=28.03 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 29 IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 29 ivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
+||++||...+=|....-+--.+-+++..+.+.+.+.+++-++++..+
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~ 48 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREAGVDDIVVVTGE 48 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhccCCceEEEecCh
Confidence 478888876443332111111345677777888888877766655555
No 169
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.08 E-value=1.7e+02 Score=21.69 Aligned_cols=39 Identities=5% Similarity=-0.031 Sum_probs=22.9
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
.+.|+|.++.-.+ |...++++++.+++.+|+..+++.+.
T Consensus 38 ~~pdiv~~S~~~~-------------~~~~~~~~~~~ik~~~p~~~iv~GG~ 76 (127)
T cd02068 38 LKPDVVGISLMTS-------------AIYEALELAKIAKEVLPNVIVVVGGP 76 (127)
T ss_pred cCCCEEEEeeccc-------------cHHHHHHHHHHHHHHCCCCEEEECCc
Confidence 4677777764211 22345667777777777766655443
No 170
>PTZ00323 NAD+ synthase; Provisional
Probab=29.80 E-value=2.7e+02 Score=24.58 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=49.3
Q ss_pred CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh--HHHHHHHHhcCC---CCCCEEeeccc----hhHHHHH
Q psy17689 39 REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD--ILTYVSWKLSGF---PKNRVIGSGTN----LDSMRFR 109 (216)
Q Consensus 39 k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd--~~t~~~~~~sg~---~~~~viG~Gt~----lds~R~~ 109 (216)
++..+-.+.+.. .+..+-+.+++.+.+++++-+|-=+| +.+.++.++.|- |..+++|.-.- -++....
T Consensus 21 ~~~~~~~~~i~~---~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A 97 (294)
T PTZ00323 21 KRAFNPAAWIEK---KCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRG 97 (294)
T ss_pred CCCCCHHHHHHH---HHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHH
Confidence 444444444433 23334444555678899999999999 344555666653 33567766211 1333445
Q ss_pred HHHHHHhCCCCCceeE
Q psy17689 110 VLLAQKLGLSPESVYG 125 (216)
Q Consensus 110 ~~la~~l~v~~~~v~~ 125 (216)
..+++.+|++...|..
T Consensus 98 ~~la~~lGi~~~~idi 113 (294)
T PTZ00323 98 RENIQACGATEVTVDQ 113 (294)
T ss_pred HHHHHHhCCcEEEEEC
Confidence 5678899987655543
No 171
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=29.66 E-value=2.8e+02 Score=21.87 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=46.9
Q ss_pred CCccEEEEcCCCCCCCC-----cCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEee
Q psy17689 25 EGSRIVIVTAGVRQREG-----ESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99 (216)
Q Consensus 25 ~daDivvitag~~~k~g-----~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~ 99 (216)
+..|+|++..|...-.. ....+.+..|.. ++...+++. ++.++++|.|.. ..++..+.+--
T Consensus 64 ~~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~---~ii~~~~~~--~~~~il~tp~~~---------~~~~~~~~~~~ 129 (198)
T cd01821 64 KPGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLR---RYIAEARAK--GATPILVTPVTR---------RTFDEGGKVED 129 (198)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHH---HHHHHHHHC--CCeEEEECCccc---------cccCCCCcccc
Confidence 47899999999764221 124566666644 455555554 345566664431 11111110000
Q ss_pred ccchhHHHHHHHHHHHhCCCCCceeEE
Q psy17689 100 GTNLDSMRFRVLLAQKLGLSPESVYGF 126 (216)
Q Consensus 100 Gt~lds~R~~~~la~~l~v~~~~v~~~ 126 (216)
..-+-.++.+.+|++.|++.-++...
T Consensus 130 -~~~~~~~~~~~~a~~~~~~~vD~~~~ 155 (198)
T cd01821 130 -TLGDYPAAMRELAAEEGVPLIDLNAA 155 (198)
T ss_pred -cchhHHHHHHHHHHHhCCCEEecHHH
Confidence 12233566777888888877665543
No 172
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=29.49 E-value=2.6e+02 Score=25.23 Aligned_cols=72 Identities=11% Similarity=0.038 Sum_probs=49.2
Q ss_pred CCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH--HHHHHhcCCCCCCEEeeccchhHHHHHH
Q psy17689 38 QREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT--YVSWKLSGFPKNRVIGSGTNLDSMRFRV 110 (216)
Q Consensus 38 ~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t--~~~~~~sg~~~~~viG~Gt~lds~R~~~ 110 (216)
+.|-|++.+.. +-+..=+++++.+.+.+.+-+++==.-|-++-+ -++...+|++++.++|.|+.+|...++.
T Consensus 126 ~~pAMt~~e~~-~ai~~G~~l~~~~~~~g~dll~~GEmGiGnTTtAaAvl~aL~g~~~~~~vg~Gsg~~~~~~~~ 199 (335)
T PRK00105 126 KEPAMTREEAE-AALAAGAALADEAADAGTDLLGVGEMGIGNTTPAAALVAALTGGDPEEVVGRGTGIDDAGLAR 199 (335)
T ss_pred cCCCCCHHHHH-HHHHHHHHHHHHHHHcCCCEEEEeCcCcchhHHHHHHHHHHhCcCHHHhcCCCCCCCcHHHHH
Confidence 34667776553 456677778888888778855544344555443 2344566999999999999999866553
No 173
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=29.31 E-value=80 Score=22.38 Aligned_cols=30 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCceeEEEEccCCCCcccceee
Q psy17689 108 FRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSG 141 (216)
Q Consensus 108 ~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~ 141 (216)
+...|++.+|++|++|...+.-++ --.||-
T Consensus 52 l~~~L~~~~gi~p~Dv~I~l~e~~----~edWSF 81 (82)
T PF14552_consen 52 LAERLAEKLGIRPEDVMIVLVENP----REDWSF 81 (82)
T ss_dssp HHHHHHHHH---GGGEEEEEEEE-----GGGEEE
T ss_pred HHHHHHHHcCCCHHHEEEEEEECC----cccCCC
Confidence 456677888999999998877665 337773
No 174
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=29.30 E-value=1.8e+02 Score=25.98 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=26.9
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc--CchhH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS--NPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvd~ 80 (216)
-.++|+.+|+.|.- +.-.-+-++.+++.+=++-+|.+. -|.|-
T Consensus 190 rdG~D~tiiA~G~m--------------v~~al~AA~~L~~~GIsa~Vi~m~tIKPiD~ 234 (312)
T COG3958 190 RDGSDLTIIATGVM--------------VAEALEAAEILKKEGISAAVINMFTIKPIDE 234 (312)
T ss_pred ecCCceEEEecCcc--------------hHHHHHHHHHHHhcCCCEEEEecCccCCCCH
Confidence 34799999998852 233334566666666666666554 56663
No 175
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=29.18 E-value=60 Score=25.87 Aligned_cols=38 Identities=11% Similarity=0.315 Sum_probs=23.9
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEE
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLL 72 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iii 72 (216)
++.||+||+. +-|++... .-+..+.+.+++.+|++.++
T Consensus 140 i~~ADvIvln----------K~D~~~~~-~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 140 IAFADVIVLN----------KIDLVSDE-QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HCT-SEEEEE-----------GGGHHHH---HHHHHHHHHHH-TTSEEE
T ss_pred chhcCEEEEe----------ccccCChh-hHHHHHHHHHHHHCCCCEEe
Confidence 7788888884 45555444 34567788888889988765
No 176
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=29.12 E-value=1.9e+02 Score=24.78 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=28.9
Q ss_pred CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 40 EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 40 ~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
+|..+.+....-..-++++++.+.+..|++++|+-+
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~l~~~~Pd~ivvis~ 53 (271)
T cd07359 18 ADPGPDAVRAAVFAAFARIRDRLEAARPDVVVVVGN 53 (271)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 344455677777889999999999999999887766
No 177
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=28.97 E-value=1.1e+02 Score=24.70 Aligned_cols=49 Identities=24% Similarity=0.410 Sum_probs=28.4
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
+++||+++++..... +..+ .|+. ..+.+.+.+++++..+++++|=.|+.
T Consensus 85 ~~~ad~iilv~d~t~-----~~Sf--~~~~--~~w~~~i~~~~~~~piilvgNK~DL~ 133 (195)
T cd01873 85 YGRSDVVLLCFSIAS-----PNSL--RNVK--TMWYPEIRHFCPRVPVILVGCKLDLR 133 (195)
T ss_pred CCCCCEEEEEEECCC-----hhHH--HHHH--HHHHHHHHHhCCCCCEEEEEEchhcc
Confidence 678888888765432 1111 1111 12333445566777788889988863
No 178
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.91 E-value=3.1e+02 Score=22.84 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCchhH--HHHHHHHhcCCCCCCEEeeccchhHHHHHHHH
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVDI--LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLL 112 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPvd~--~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~l 112 (216)
+..-..++++.+.+-+...+=|..++|... +..+..+ +| +=.+|.||.+|..-++..+
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~---~~-~~~vGAGTVl~~e~a~~ai 73 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAE---VE-EAIVGAGTILNAKQFEDAA 73 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHH---CC-CCEEeeEeCcCHHHHHHHH
Confidence 456677899999999999999999988754 3332222 44 5789999999988776644
No 179
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=28.87 E-value=2.8e+02 Score=23.48 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCch--hHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHH
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPV--DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLL 112 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPv--d~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~l 112 (216)
+.+-...++..+.+-+..++=|-...|. +.+..+..++ | +=+||.||.|+..-++..+
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~---p-~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEF---P-EALIGAGTVLNPEQARQAI 82 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhC---c-ccEEccccccCHHHHHHHH
Confidence 3455667888999999999999888885 4555555544 3 6799999999987766544
No 180
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.62 E-value=3.1e+02 Score=22.83 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCchh--HHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEE
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVD--ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFII 128 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPvd--~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~ 128 (216)
+..-..++++.+.+.+.+.+=+-.++|.- .+..+..+ +| +=.+|.||.+|..-++..+. .|.+ +++
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~---~~-~~~vGAGTVl~~~~a~~a~~--aGA~------Fiv 85 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKE---VP-DALIGAGTVLNPEQLRQAVD--AGAQ------FIV 85 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHH---CC-CCEEEEEeCCCHHHHHHHHH--cCCC------EEE
Confidence 45666789999999999998888888764 33333332 44 57899999999987776543 4432 455
Q ss_pred ccCCCCcccce
Q psy17689 129 GEHGDSSVPVW 139 (216)
Q Consensus 129 G~HGds~vp~~ 139 (216)
..|-+..+..+
T Consensus 86 sP~~~~~v~~~ 96 (204)
T TIGR01182 86 SPGLTPELAKH 96 (204)
T ss_pred CCCCCHHHHHH
Confidence 55544444433
No 181
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=28.61 E-value=3.7e+02 Score=22.93 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=60.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch------hHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhC
Q psy17689 44 RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV------DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLG 117 (216)
Q Consensus 44 r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv------d~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~ 117 (216)
..+-+.+-..+++++...+.+++.+-+.++.|.-+ +-+...+++.+|++- +|+ +.-+.+|+.+.= -..+
T Consensus 33 ~~e~i~r~~~~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i-~iI---sgeeEa~l~~~g-v~~~ 107 (285)
T PF02541_consen 33 SEEAIERAIDALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGIDI-EII---SGEEEARLSFLG-VLSS 107 (285)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-E-EEE----HHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCce-EEe---cHHHHHHHHHHH-HHhh
Confidence 35666788999999999999999999999987442 233444567789875 344 556778877743 3344
Q ss_pred C-CCCceeEEEEccCCCCcccceeeee
Q psy17689 118 L-SPESVYGFIIGEHGDSSVPVWSGVN 143 (216)
Q Consensus 118 v-~~~~v~~~v~G~HGds~vp~~S~~~ 143 (216)
. +..+.-..=+|+ |++++..+..-.
T Consensus 108 l~~~~~~lviDIGG-GStEl~~~~~~~ 133 (285)
T PF02541_consen 108 LPPDKNGLVIDIGG-GSTELILFENGK 133 (285)
T ss_dssp STTTSSEEEEEEES-SEEEEEEEETTE
T ss_pred ccccCCEEEEEECC-CceEEEEEECCe
Confidence 5 444333334454 778888775433
No 182
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=28.60 E-value=63 Score=28.30 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
.+-+.++++.+++..|+. +|++|||.-.+
T Consensus 34 ~~a~~~~~~~v~~~~PDv-vVvis~dH~~~ 62 (278)
T PRK13364 34 FDGFPPVREWLEKVKPDV-AVVFYNDHGLN 62 (278)
T ss_pred HHHHHHHHHHHHHhCCCE-EEEECCchHhh
Confidence 678899999999999997 55678887544
No 183
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=28.29 E-value=70 Score=25.43 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=31.1
Q ss_pred EEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 29 IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 29 ivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
.||+++|..++-|....-+--.+-+++........+...+.++++....
T Consensus 3 ~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~ 51 (190)
T TIGR03202 3 AIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSSRLSKVIVVIGEK 51 (190)
T ss_pred EEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCc
Confidence 4788888877667553333335677777777666666666666555433
No 184
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=28.26 E-value=1.1e+02 Score=19.69 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeecc
Q psy17689 107 RFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLR 150 (216)
Q Consensus 107 R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~ 150 (216)
++...+.+.+|+++.++.. ++-||... .|+ ++|+++.
T Consensus 23 ~it~~l~~~~~~p~~~v~V-~i~e~~~~---~w~---~gG~~~~ 59 (62)
T PRK00745 23 EITRVTVETLGCPPESVDI-IITDVKRE---NWA---TGGKLWS 59 (62)
T ss_pred HHHHHHHHHcCCChhHEEE-EEEEcChH---Hee---ECCEEcC
Confidence 4566788899999999854 44666422 454 4676654
No 185
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=28.21 E-value=1.1e+02 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 40 EGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 40 ~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
|+..+.+..+...+-++++++.+.+..|++++++ |+
T Consensus 16 ~~~~~~~~~~~~~~al~~~~~~l~~~~Pd~ivvi-s~ 51 (268)
T cd07367 16 SPKGVEDQAARVVQGMAEIGRRVRESRPDVLVVI-SS 51 (268)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHcCCCEEEEE-eC
Confidence 3445567788888999999999999999987655 54
No 186
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=28.21 E-value=77 Score=30.87 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=48.9
Q ss_pred CCccc-cCC--ccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch---hHHHHHHHHhcCCC
Q psy17689 19 LNYAL-SEG--SRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFP 92 (216)
Q Consensus 19 ~~~~~-~~d--aDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv---d~~t~~~~~~sg~~ 92 (216)
++.++ +++ +|++|=+.+.| |- +=+++.+.+.+++++.||.-.|||. ++...-+++++.
T Consensus 391 ~~L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~-- 454 (581)
T PLN03129 391 ASLLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTG-- 454 (581)
T ss_pred CCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhc--
Confidence 34444 666 77766655543 21 2246777888889999999999996 778887777762
Q ss_pred CCCEEeeccchhHH
Q psy17689 93 KNRVIGSGTNLDSM 106 (216)
Q Consensus 93 ~~~viG~Gt~lds~ 106 (216)
-+-+|++|+-.+..
T Consensus 455 G~ai~AtGSPf~pv 468 (581)
T PLN03129 455 GRAIFASGSPFDPV 468 (581)
T ss_pred CCEEEEeCCCCCCe
Confidence 13488888755543
No 187
>PRK08508 biotin synthase; Provisional
Probab=28.18 E-value=3.6e+02 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.084 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHhhCCCeE
Q psy17689 51 NVNIFKGIIPNIVKYSPQCT 70 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~i 70 (216)
..+.+.++++.|++..|+..
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~ 92 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLH 92 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcE
Confidence 35677788888888777643
No 188
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=28.06 E-value=1.2e+02 Score=19.38 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeec
Q psy17689 106 MRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNL 149 (216)
Q Consensus 106 ~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l 149 (216)
.++...+++.+|++++++...+ -+|... .|+ ++|+.+
T Consensus 22 ~~it~~l~~~~~~p~~~v~V~i-~e~~~~---~~~---~gG~~~ 58 (61)
T PRK02220 22 KDVTAAVSKNTGAPAEHIHVII-NEMSKN---HYA---VGGKRL 58 (61)
T ss_pred HHHHHHHHHHhCcChhhEEEEE-EEeChh---HeE---ECCEEC
Confidence 3466778889999999998554 556322 454 455543
No 189
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.00 E-value=74 Score=29.13 Aligned_cols=65 Identities=17% Similarity=0.410 Sum_probs=40.2
Q ss_pred HHHHHHHHHH-HhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCC
Q psy17689 53 NIFKGIIPNI-VKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119 (216)
Q Consensus 53 ~i~~~i~~~i-~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~ 119 (216)
++.++++..= ++.=|+|-+ |+|||-+.-.-+=++-...+.=.|+.-|...-..|.|. +|++.|++
T Consensus 246 q~~re~a~~rm~~~Vp~Adv-VItNPTH~AVAlkY~~~~~~AP~VvAKG~d~~AlkIre-iA~e~~Ip 311 (363)
T COG1377 246 QMQREIARRRMMSDVPKADV-VITNPTHYAVALKYDPEKMPAPVVVAKGVDLVALKIRE-IAKEHGIP 311 (363)
T ss_pred HHHHHHHHHHHHhhCCCCCE-EeeCcCceeeeeeeccccCCCCEEEEeCCcHHHHHHHH-HHHHcCCc
Confidence 3444554443 333488855 67999875332222222233348999999988888777 78887764
No 190
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=27.95 E-value=3.3e+02 Score=23.61 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=37.3
Q ss_pred cCCccEEEEcCCCCCCC--CcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQRE--GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~--g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
+++.|+||-+||....+ ..+..+.+..|+.-...+.+.+.+.+.. .++.+|
T Consensus 72 ~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 72 LRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred HhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 57799999999864322 2345678899999999999998887644 455554
No 191
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.92 E-value=1.8e+02 Score=29.40 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=40.0
Q ss_pred ccCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc--hhHHHHHHHHhc---CCCCCCE
Q psy17689 23 LSEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP--VDILTYVSWKLS---GFPKNRV 96 (216)
Q Consensus 23 ~~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP--vd~~t~~~~~~s---g~~~~~v 96 (216)
++++.|+|+| |+|...+ |..++.++........|.-+++|++-= .+.+..++..+. +.+...+
T Consensus 260 ~~~~~D~VLIDTAGRs~~-----------d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~gl 328 (767)
T PRK14723 260 ALGDKHLVLIDTVGMSQR-----------DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGC 328 (767)
T ss_pred HhcCCCEEEEeCCCCCcc-----------CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEE
Confidence 4788999999 7775431 122233332222234576677776432 445555555443 4467777
Q ss_pred EeeccchhH
Q psy17689 97 IGSGTNLDS 105 (216)
Q Consensus 97 iG~Gt~lds 105 (216)
| + |-||.
T Consensus 329 I-l-TKLDE 335 (767)
T PRK14723 329 I-I-TKLDE 335 (767)
T ss_pred E-E-eccCC
Confidence 6 5 88887
No 192
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=27.75 E-value=1.4e+02 Score=27.36 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=35.3
Q ss_pred EEEcCCcc-ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEE-cCchhHHHHHHH
Q psy17689 15 VLTRLNYA-LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIV-SNPVDILTYVSW 86 (216)
Q Consensus 15 v~~~~~~~-~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivv-tNPvd~~t~~~~ 86 (216)
...+.+++ ..++||+|+++...|........ +..-+++.++.+.+..|+.++++- |=|..+.-.+..
T Consensus 61 l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~-----dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~ 129 (388)
T PRK15057 61 FNATLDKNEAYRDADYVIIATPTDYDPKTNYF-----NTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHK 129 (388)
T ss_pred EEEecchhhhhcCCCEEEEeCCCCCccCCCCc-----ChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHH
Confidence 34455554 47999999999876632211111 223334444444444555555443 456665554443
No 193
>KOG1111|consensus
Probab=27.48 E-value=1.9e+02 Score=26.79 Aligned_cols=118 Identities=25% Similarity=0.391 Sum_probs=68.3
Q ss_pred ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC-chh-HHHHHHHHhcCCCCCCEEeec
Q psy17689 23 LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN-PVD-ILTYVSWKLSGFPKNRVIGSG 100 (216)
Q Consensus 23 ~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN-Pvd-~~t~~~~~~sg~~~~~viG~G 100 (216)
+-..+|++.|++- +|+ +..+-+...-++.+.+.+.-|+.-+++++. |-- .+-+...|..=.++=+++|+
T Consensus 189 ~~~S~~i~~ivv~-------sRL-vyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~- 259 (426)
T KOG1111|consen 189 DKPSADIITIVVA-------SRL-VYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGT- 259 (426)
T ss_pred ccCCCCeeEEEEE-------eee-eeccchHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecc-
Confidence 3556665444432 244 444445677788888999999999999984 633 34445545443444455544
Q ss_pred cchhHHHHHHHHHHH-hCCCCCceeEE--EEccCCCCcccceeeeeECCeeccccCc
Q psy17689 101 TNLDSMRFRVLLAQK-LGLSPESVYGF--IIGEHGDSSVPVWSGVNVAGVNLREVNP 154 (216)
Q Consensus 101 t~lds~R~~~~la~~-l~v~~~~v~~~--v~G~HGds~vp~~S~~~v~g~~l~~~~~ 154 (216)
+++.|.+..+++= .=++++--+++ ++=|-.+.-.+.-| +++||.| |.+|
T Consensus 260 --v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVs-TrVGGIp--eVLP 311 (426)
T KOG1111|consen 260 --VPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVS-TRVGGIP--EVLP 311 (426)
T ss_pred --cchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEE-eecCCcc--ccCC
Confidence 8999999888651 11344444444 33344333344444 4677755 4444
No 194
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=27.35 E-value=82 Score=30.54 Aligned_cols=72 Identities=13% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCccc-cCCc--cEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch---hHHHHHHHHhcCCC
Q psy17689 19 LNYAL-SEGS--RIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFP 92 (216)
Q Consensus 19 ~~~~~-~~da--Divvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv---d~~t~~~~~~sg~~ 92 (216)
++.+| ++++ |++|=+.+.| |- +-+++.+.+.++++..||.=.|||. ++...-+++++.
T Consensus 371 ~~L~e~v~~~KPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~-- 434 (559)
T PTZ00317 371 KTLEDVVRFVKPTALLGLSGVG---GV-----------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTN-- 434 (559)
T ss_pred CCHHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhcc--
Confidence 34544 6777 7766555543 31 2246778889999999999999996 777777777762
Q ss_pred CCCEEeeccchhHH
Q psy17689 93 KNRVIGSGTNLDSM 106 (216)
Q Consensus 93 ~~~viG~Gt~lds~ 106 (216)
-+-+|++|.-.+..
T Consensus 435 Grai~AtGspf~pv 448 (559)
T PTZ00317 435 GRAIVASGSPFPPV 448 (559)
T ss_pred CCEEEEECCCCCCc
Confidence 24588888876653
No 195
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=27.14 E-value=2.3e+02 Score=24.64 Aligned_cols=44 Identities=14% Similarity=0.105 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCchhHHHH-HHHHhcCCCCCCEEee
Q psy17689 55 FKGIIPNIVKYSPQCTLLIVSNPVDILTY-VSWKLSGFPKNRVIGS 99 (216)
Q Consensus 55 ~~~i~~~i~~~~p~~iiivvtNPvd~~t~-~~~~~sg~~~~~viG~ 99 (216)
+..++.++++.+|+++++. +++.+.... -..+..|+++..+++.
T Consensus 188 ~~~~i~~l~~~~~d~v~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~ 232 (347)
T cd06340 188 LTSEVLKLKAANPDAILPA-SYTNDAILLVRTMKEQRVEPKAVYSV 232 (347)
T ss_pred hHHHHHHHHhcCCCEEEEc-ccchhHHHHHHHHHHcCCCCcEEEec
Confidence 4445556666677765543 344443221 1123456655444443
No 196
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.01 E-value=1.5e+02 Score=23.60 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=9.4
Q ss_pred HHHHHHhhCCCeEEEEEcCc
Q psy17689 58 IIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 58 i~~~i~~~~p~~iiivvtNP 77 (216)
+++.|++.+|+.+++-.+.|
T Consensus 91 i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 91 IIERINASGADILFVGLGAP 110 (171)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 44444444444444444444
No 197
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=26.98 E-value=2.2e+02 Score=24.76 Aligned_cols=104 Identities=10% Similarity=0.034 Sum_probs=57.5
Q ss_pred CccEEEEcCCCCCC--CCcCHHHHHHHhHHHHHHHHHHHHhhC-------CC-eEEEEEcCchhHHHH------------
Q psy17689 26 GSRIVIVTAGVRQR--EGESRLSLVERNVNIFKGIIPNIVKYS-------PQ-CTLLIVSNPVDILTY------------ 83 (216)
Q Consensus 26 daDivvitag~~~k--~g~~r~dll~~N~~i~~~i~~~i~~~~-------p~-~iiivvtNPvd~~t~------------ 83 (216)
+.|+||-+|+.... +.....+.+..|+.-...+.+.+.++. .. ..++.+|-. .+...
T Consensus 73 ~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~-~vyg~~~~~~~~~~~~~ 151 (352)
T PRK10084 73 QPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTD-EVYGDLPHPDEVENSEE 151 (352)
T ss_pred CCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecch-hhcCCCCcccccccccc
Confidence 47999999986432 222346788999999999999888751 11 234444321 11110
Q ss_pred --HHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccC
Q psy17689 84 --VSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEH 131 (216)
Q Consensus 84 --~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~H 131 (216)
.+.+...+.+....|. +-....++-...++..+++.-.++.. |.|++
T Consensus 152 ~~~~~E~~~~~p~~~Y~~-sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 152 LPLFTETTAYAPSSPYSA-SKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY 201 (352)
T ss_pred CCCccccCCCCCCChhHH-HHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence 0001112223334444 34444444555567778776666654 88865
No 198
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=26.77 E-value=2.3e+02 Score=23.96 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=36.5
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
++++|+||-+++.......+..+....|+.....+.+.+.+.+-. .++.++
T Consensus 62 ~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S 112 (328)
T TIGR03466 62 VAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS 112 (328)
T ss_pred HhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence 678999999887543334456778888999999999988877543 344444
No 199
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=26.56 E-value=1.9e+02 Score=28.21 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=32.9
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
+.++|+||.++|....+...-...+..|..-.+.+++.+.+.+-. .||+++
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS 207 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT 207 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence 789999999998754322222234556777778888888776544 444444
No 200
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=26.54 E-value=2.8e+02 Score=27.12 Aligned_cols=100 Identities=10% Similarity=0.062 Sum_probs=58.6
Q ss_pred CchhHHHHHHHH--hcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccccC
Q psy17689 76 NPVDILTYVSWK--LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVN 153 (216)
Q Consensus 76 NPvd~~t~~~~~--~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~~~ 153 (216)
-|-|++-..+++ ..|++--|||-..+.++.++..-..+++.|....-.=.|. +.|
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt-~sp---------------------- 149 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYT-TSP---------------------- 149 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEec-CCC----------------------
Confidence 477888877765 4588888888888888888777777777775221111111 211
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHc
Q psy17689 154 PAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLN 203 (216)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~v~~~g~~ii~~Kg~t~~~~a~a~~~ii~ail~ 203 (216)
..+.+.+.++.+++.+.|...+..|-......-..+.+++.+|..
T Consensus 150 -----~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~ 194 (596)
T PRK14042 150 -----VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQ 194 (596)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHh
Confidence 012344455555555556555555555555555555555555543
No 201
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=26.45 E-value=4.5e+02 Score=25.15 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCeEEEEEcC----------chhHHHHHHHHh--cCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689 58 IIPNIVKYSPQCTLLIVSN----------PVDILTYVSWKL--SGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 58 i~~~i~~~~p~~iiivvtN----------Pvd~~t~~~~~~--sg~~~~~viG~Gt~lds~R~~~~la~~l~v 118 (216)
..+.+++..|+..+-.... |-|++-..+.+. .|.+-=|||-..+.++.++..-..+++.|.
T Consensus 66 rlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~ 138 (499)
T PRK12330 66 RLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGK 138 (499)
T ss_pred HHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCC
Confidence 3455666666777666653 666777776654 477777777666667666555555566554
No 202
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=26.39 E-value=3.6e+02 Score=22.64 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCchhH--HHHHHHHhcCCCCCCEEeecc-----chhHHHHHHHHHHHhCCCCCce
Q psy17689 53 NIFKGIIPNIVKYSPQCTLLIVSNPVDI--LTYVSWKLSGFPKNRVIGSGT-----NLDSMRFRVLLAQKLGLSPESV 123 (216)
Q Consensus 53 ~i~~~i~~~i~~~~p~~iiivvtNPvd~--~t~~~~~~sg~~~~~viG~Gt-----~lds~R~~~~la~~l~v~~~~v 123 (216)
.++..+-+.+.+.+.+.+++-+|-=+|. ++.++.+..+ +.++++..- .-+.......+++.+|++...+
T Consensus 9 ~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~--~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i 84 (248)
T cd00553 9 ALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALG--RENVLALFMPSRYSSEETREDAKELAEALGIEHVNI 84 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhC--cccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEe
Confidence 3445555666667788899999988884 4555656544 345665511 1345566777889999875444
No 203
>PLN00198 anthocyanidin reductase; Provisional
Probab=26.36 E-value=2.4e+02 Score=24.44 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=34.8
Q ss_pred cCCccEEEEcCCCCCCCCcC-HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQREGES-RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~-r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
++++|+||-+|+.......+ ..+++..|+.-...+.+.+.+.+.-..++.+|
T Consensus 78 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S 130 (338)
T PLN00198 78 IAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS 130 (338)
T ss_pred HhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence 67899999988853222122 34567889999999999988874222444443
No 204
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=25.96 E-value=2.1e+02 Score=26.07 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHhhC-CCeEEEEEc--CchhHHHHHHHHhcCCCCCCEEeeccchhH
Q psy17689 50 RNVNIFKGIIPNIVKYS-PQCTLLIVS--NPVDILTYVSWKLSGFPKNRVIGSGTNLDS 105 (216)
Q Consensus 50 ~N~~i~~~i~~~i~~~~-p~~iiivvt--NPvd~~t~~~~~~sg~~~~~viG~Gt~lds 105 (216)
.+...++++.+.+.+.+ |+.+|++-+ |+-.+-.+ ...|-|- -.+|+||.|-+
T Consensus 261 ~~~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~---~~~g~pi-D~~GVGt~l~~ 315 (352)
T PRK07188 261 VNPELIKALRKALDENGGKHVKIIVSSGFDAKKIREF---EAQNVPV-DIYGVGSSLLK 315 (352)
T ss_pred ccHHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHH---HHcCCCc-cEEecCccccc
Confidence 36788888888888887 555544433 33323222 2234333 36777777755
No 205
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=25.93 E-value=1.4e+02 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=15.7
Q ss_pred HHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 56 KGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 56 ~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+.+...+.+++++.-++++.|..|.
T Consensus 92 ~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 92 PNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred HHHHHHHHHhCCCCcEEEEEEchhc
Confidence 3344555555556667777887776
No 206
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.92 E-value=3.6e+02 Score=25.13 Aligned_cols=91 Identities=23% Similarity=0.226 Sum_probs=46.1
Q ss_pred CCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc--CchhHHHHHHHHh-cCCCCCCEEeec
Q psy17689 25 EGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS--NPVDILTYVSWKL-SGFPKNRVIGSG 100 (216)
Q Consensus 25 ~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvd~~t~~~~~~-sg~~~~~viG~G 100 (216)
.+.|+||+ |+|... .+...+.++..-.....|+.+++|+. ..-|..... ..+ ..++...+| .
T Consensus 181 ~~~DvVIIDTaGr~~-----------~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a-~~f~~~v~i~giI-l- 246 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQ-----------IDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA-KTFNERLGLTGVV-L- 246 (428)
T ss_pred cCCCEEEEeCCCccc-----------cCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH-HHHHhhCCCCEEE-E-
Confidence 56788888 666432 12223333333333336888877764 233333322 222 234455665 4
Q ss_pred cchh-HHHHHH--HHHHHhCCCCCceeEEEEccCC
Q psy17689 101 TNLD-SMRFRV--LLAQKLGLSPESVYGFIIGEHG 132 (216)
Q Consensus 101 t~ld-s~R~~~--~la~~l~v~~~~v~~~v~G~HG 132 (216)
|-+| +.|.-. -++..+++| |.....|++=
T Consensus 247 TKlD~~~~~G~~lsi~~~~~~P---I~fi~~Ge~i 278 (428)
T TIGR00959 247 TKLDGDARGGAALSVRSVTGKP---IKFIGVGEKI 278 (428)
T ss_pred eCccCcccccHHHHHHHHHCcC---EEEEeCCCCh
Confidence 7778 344333 344667766 4445557773
No 207
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=25.87 E-value=1.5e+02 Score=27.62 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.2
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTY 83 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~ 83 (216)
.++.|+|.|++..+ +.+-..++++.+++.+|+..+++.+..+..+..
T Consensus 66 ~~~~Dlv~is~~t~-------------~~~~~~~ia~~iK~~~p~~~vv~GG~h~t~~pe 112 (472)
T TIGR03471 66 AKDYDLVVLHTSTP-------------SFPSDVKTAEALKEQNPATKIGFVGAHVAVLPE 112 (472)
T ss_pred hcCCCEEEEECCCc-------------chHHHHHHHHHHHHhCCCCEEEEECCCcccCHH
Confidence 56789999987644 245566789999999999988888766555544
No 208
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=25.87 E-value=1.8e+02 Score=25.32 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHH
Q psy17689 46 SLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILT 82 (216)
Q Consensus 46 dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t 82 (216)
+..+...+-++++++.+++..|+.+ |+++||.-.+-
T Consensus 28 ~~~~~~~~a~~~~~~~i~~~~PD~i-Vvi~~dH~~~f 63 (277)
T cd07950 28 PAWAPIFDGYEPVKQWLAEQKPDVL-FMVYNDHVTSF 63 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEE-EEEcCcHHHHh
Confidence 3446778899999999999999975 56688876554
No 209
>PRK07680 late competence protein ComER; Validated
Probab=25.80 E-value=1.3e+02 Score=25.71 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=27.7
Q ss_pred cCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689 18 RLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD 79 (216)
Q Consensus 18 ~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd 79 (216)
+.+.++ ++++|+||++.- |. .+.++.+.+..+ .++.+++-++|++.
T Consensus 53 ~~~~~~~~~~aDiVilav~----p~------------~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 53 AKTIEEVISQSDLIFICVK----PL------------DIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ECCHHHHHHhCCEEEEecC----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 345544 789999999861 11 122333444444 46678888888764
No 210
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.76 E-value=98 Score=28.86 Aligned_cols=71 Identities=23% Similarity=0.283 Sum_probs=40.1
Q ss_pred cccCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc-C-chhHHHHHHHHhcCCCCCCEE
Q psy17689 22 ALSEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS-N-PVDILTYVSWKLSGFPKNRVI 97 (216)
Q Consensus 22 ~~~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt-N-Pvd~~t~~~~~~sg~~~~~vi 97 (216)
..+++.|+|+| |+|..+ |...+ +.++.. +... .|.-.++|++ + =.+.+..++..+..++...+|
T Consensus 265 ~~l~~~d~VLIDTaGrsq-----rd~~~------~~~l~~-l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~~~I 332 (420)
T PRK14721 265 HELRGKHMVLIDTVGMSQ-----RDQML------AEQIAM-LSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIHGCI 332 (420)
T ss_pred HHhcCCCEEEecCCCCCc-----chHHH------HHHHHH-HhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 34889999988 554332 22222 222222 2222 3444444443 2 244567777778888888887
Q ss_pred eeccchhHH
Q psy17689 98 GSGTNLDSM 106 (216)
Q Consensus 98 G~Gt~lds~ 106 (216)
+ |-||..
T Consensus 333 -~-TKlDEt 339 (420)
T PRK14721 333 -I-TKVDEA 339 (420)
T ss_pred -E-EeeeCC
Confidence 5 888863
No 211
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=25.71 E-value=3.7e+02 Score=26.43 Aligned_cols=61 Identities=5% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccch
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNL 103 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~l 103 (216)
.++||+|||..-. .......++++.+++.++. .+++.++|-+ +.. ++..|.+ .+|-+|+..
T Consensus 545 sga~i~viCssD~------------~Y~~~a~~~~~al~~ag~~-~v~lAG~p~~-~~~--~~~aGvd--~fi~~g~d~ 605 (619)
T TIGR00642 545 AGAQVAVLCSSDK------------VYAQQGLEVAKALKAAGAK-ALYLAGAFKE-FGD--DAAEAID--GRLFMKMNV 605 (619)
T ss_pred cCCCEEEEeCCCc------------chHHHHHHHHHHHHhCCCC-EEEEeCCCcc-hhh--HHhcCCc--ceeEcCCcH
Confidence 7888999987532 2345667888999999887 8999999988 444 5666765 344455543
No 212
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=25.58 E-value=1.3e+02 Score=19.25 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCCceeEEEEccCCCCcccceeeeeECCeeccc
Q psy17689 107 RFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLRE 151 (216)
Q Consensus 107 R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~S~~~v~g~~l~~ 151 (216)
.+...+++.+|++++++...+ -+|... .|+ ++|.++.+
T Consensus 23 ~it~~l~~~lg~~~~~v~V~i-~e~~~~---~w~---~gG~~~~~ 60 (63)
T TIGR00013 23 GVTEAMAETLGANLESIVVII-DEMPKN---NYG---IGGELVSD 60 (63)
T ss_pred HHHHHHHHHhCCCcccEEEEE-EEcCHH---Hee---ECCEEhhH
Confidence 456778888999999988554 666322 565 47776654
No 213
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p). This family includes Noc4p (neighbor of COX4; neighbor of Cytochrome c Oxidase 4; nucleolar complex associated 4 homolog) which belongs to the family of unknown function, UPF0172, with MPN/JAMM-like domains. Proteins in this family are homologs of the NOC4 gene which is conserved in eukaryotic members including human, dog, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, and rice. NOC4 highly expressed in the pancreas and moderately in liver, heart, lung, kidney, brain, skeletal muscle, and placenta. This nucleolar protein forms a complex with Nop14p that mediates maturation and nuclear export of 40S ribosomal subunits. This family of eukaryotic MPN-like domains lacks the key residues that coordinate a metal ion and therefore does not show catalytic isopeptidase activity.
Probab=25.50 E-value=89 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
-++.+.|+++|.++.|++.++++.|
T Consensus 88 ~~~a~kIadki~~~~~~a~ll~vdn 112 (182)
T cd08060 88 SPVAKKIADKIAENFSNACLLMVDN 112 (182)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3788899999999999999999988
No 214
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=25.15 E-value=97 Score=23.96 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=28.4
Q ss_pred EEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 29 IVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 29 ivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
.||+++|..++-|....-+--.+.+++..+.+.+.+.+.+-+++ ++++.+
T Consensus 3 ~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~~~~~i~v-v~~~~~ 52 (186)
T cd04182 3 AIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAAGLSRVIV-VLGAEA 52 (186)
T ss_pred EEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhCCCCcEEE-ECCCcH
Confidence 46777887665443211111245677777788887775555544 455433
No 215
>TIGR03289 frhB coenzyme F420 hydrogenase, subunit beta. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. The N- and C-terminal domains of this protein are modelled by pfam04422 and pfam04423 respectively.
Probab=25.09 E-value=3.8e+02 Score=23.26 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=40.6
Q ss_pred CCeEEEEEcCchhHHHHHHHHhc--CCC--CCCE---Eeecc--chhHHHHHHHHHHHhCCCCCceeEEEE
Q psy17689 67 PQCTLLIVSNPVDILTYVSWKLS--GFP--KNRV---IGSGT--NLDSMRFRVLLAQKLGLSPESVYGFII 128 (216)
Q Consensus 67 p~~iiivvtNPvd~~t~~~~~~s--g~~--~~~v---iG~Gt--~lds~R~~~~la~~l~v~~~~v~~~v~ 128 (216)
+...+++++-||++.+.-..... ++. .++| +|+=| ......++.+|.++.|++|.+|..+-+
T Consensus 91 ~~~~va~vGtPCqi~alr~l~~~~~~~~~~~d~i~~~Igl~C~g~~s~~~~~~~l~~~~g~~~~~v~~~~~ 161 (275)
T TIGR03289 91 GLEKIGTVGTPCQVMGLRKAQTYPVGVRNVVDKIALSIGIYCMENFPYESLKTFINDKCGVTMEQVTKMDI 161 (275)
T ss_pred CCCEEEEEccchHHHHHHHHHhccccccccccceEEEEeeeCCCCCCHHHHHHHHHHhcCCCHHHccEEEe
Confidence 46889999999999875544321 222 2454 33322 234467889998888999888876544
No 216
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=24.93 E-value=2.9e+02 Score=20.48 Aligned_cols=62 Identities=24% Similarity=0.326 Sum_probs=33.2
Q ss_pred CCeEEEEEcCch-hHHHHHHHHhcCCC--CCCEEeeccc---hhHHHHHHHHHHHhCCCCCceeEEEEccC
Q psy17689 67 PQCTLLIVSNPV-DILTYVSWKLSGFP--KNRVIGSGTN---LDSMRFRVLLAQKLGLSPESVYGFIIGEH 131 (216)
Q Consensus 67 p~~iiivvtNPv-d~~t~~~~~~sg~~--~~~viG~Gt~---lds~R~~~~la~~l~v~~~~v~~~v~G~H 131 (216)
.+..+.++||-. +.+...+.+ .|+. ...+++.... -....+-..+.++++++|+++ +++|.+
T Consensus 92 ~~~~~~i~Sn~~~~~~~~~l~~-~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~--~~vgD~ 159 (176)
T PF13419_consen 92 KGIPLVIVSNGSRERIERVLER-LGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEI--LFVGDS 159 (176)
T ss_dssp TTSEEEEEESSEHHHHHHHHHH-TTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGE--EEEESS
T ss_pred ccceeEEeecCCcccccccccc-cccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceE--EEEeCC
Confidence 355666667543 334444443 3444 4567755311 112234445667789988664 566765
No 217
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=24.92 E-value=1.7e+02 Score=27.52 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchh
Q psy17689 53 NIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLD 104 (216)
Q Consensus 53 ~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~ld 104 (216)
.+.+++.+.+.+.+.+-+-|++||=.|.-.-.-.+..|.|.. .||+||.|-
T Consensus 261 ~l~~~vr~~ld~~G~~~vkIi~S~gLde~~i~~l~~~g~~~d-~fGvGt~L~ 311 (443)
T TIGR01513 261 YLSKQARKQLDAAGLTQVKIVVSNDLDENSIAALKAEGAPID-VYGVGTSLV 311 (443)
T ss_pred HHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHCCCcee-EEecCccee
Confidence 444444444455543333366666554322111222344443 666666664
No 218
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=24.78 E-value=1.8e+02 Score=22.82 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=14.1
Q ss_pred EEEEEcC-chhHHHHHHHHhcCCCCCCEEee
Q psy17689 70 TLLIVSN-PVDILTYVSWKLSGFPKNRVIGS 99 (216)
Q Consensus 70 iiivvtN-Pvd~~t~~~~~~sg~~~~~viG~ 99 (216)
+++.+.| +-|+.+| +.-|+|++|||-+
T Consensus 121 f~~~~gn~~~D~~~y---~~~gi~~~~i~~i 148 (157)
T smart00775 121 FYAGFGNRITDVISY---SAVGIPPSRIFTI 148 (157)
T ss_pred EEEEeCCCchhHHHH---HHcCCChhhEEEE
Confidence 3344444 6665554 3456666666544
No 219
>PRK13529 malate dehydrogenase; Provisional
Probab=24.69 E-value=99 Score=30.02 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=48.0
Q ss_pred Cccc-cCCc--cEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch---hHHHHHHHHhcCCCC
Q psy17689 20 NYAL-SEGS--RIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV---DILTYVSWKLSGFPK 93 (216)
Q Consensus 20 ~~~~-~~da--Divvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv---d~~t~~~~~~sg~~~ 93 (216)
+.++ ++++ |++|=+.+.| | -.=+++.+.|.++++..||.-.|||. ++...-+++++. -
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~--G 436 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTD--G 436 (563)
T ss_pred CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhc--C
Confidence 4444 6776 7766555543 3 12246777888899999999999997 467777777762 2
Q ss_pred CCEEeeccchhH
Q psy17689 94 NRVIGSGTNLDS 105 (216)
Q Consensus 94 ~~viG~Gt~lds 105 (216)
+-+|++|+-.+-
T Consensus 437 rai~AtGspf~p 448 (563)
T PRK13529 437 RALVATGSPFAP 448 (563)
T ss_pred CEEEEECCCCCC
Confidence 468888886554
No 220
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.65 E-value=3.2e+02 Score=23.69 Aligned_cols=18 Identities=6% Similarity=0.147 Sum_probs=8.5
Q ss_pred HHHHHHHhhCCCeEEEEE
Q psy17689 57 GIIPNIVKYSPQCTLLIV 74 (216)
Q Consensus 57 ~i~~~i~~~~p~~iiivv 74 (216)
.++.++++.+|+++++..
T Consensus 190 ~~v~~i~~~~~d~v~~~~ 207 (362)
T cd06343 190 SQVAKLKAAGADVVVLAT 207 (362)
T ss_pred HHHHHHHhcCCCEEEEEc
Confidence 344444445555544433
No 221
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=24.50 E-value=1.9e+02 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.3
Q ss_pred CccccCCccEEEEcCC
Q psy17689 20 NYALSEGSRIVIVTAG 35 (216)
Q Consensus 20 ~~~~~~daDivvitag 35 (216)
+++++++.|++++++|
T Consensus 58 ~~~~~~~vDivffa~g 73 (366)
T TIGR01745 58 DIDALKALDIIITCQG 73 (366)
T ss_pred ccccccCCCEEEEcCC
Confidence 3457999999999987
No 222
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=24.24 E-value=1.6e+02 Score=25.92 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=24.2
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEE
Q psy17689 43 SRLSLVERNVNIFKGIIPNIVKYSPQCTLLI 73 (216)
Q Consensus 43 ~r~dll~~N~~i~~~i~~~i~~~~p~~iiiv 73 (216)
.|.....+-.+-++++++.+++..|+++|++
T Consensus 27 ~~~~~~~~~~~a~~~~~~~i~~~~Pd~IVVi 57 (294)
T cd07372 27 RSQGGWEQLRWAYERARESIEALKPDVLLVH 57 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3444455567889999999999999987665
No 223
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.10 E-value=1.4e+02 Score=24.83 Aligned_cols=31 Identities=10% Similarity=0.113 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 49 ERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 49 ~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
..+.+-++++.+.+++.+++..+++-++|++
T Consensus 150 ~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred hccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 3455666666666666666666666666554
No 224
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=24.05 E-value=1.4e+02 Score=24.33 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=28.3
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
++++|++|++-.... |..+ .-++.+.+.+.+++++..++++.|=.|.
T Consensus 65 ~~~ad~~ilV~D~t~-----~~S~-----~~i~~w~~~i~~~~~~~piilvgNK~Dl 111 (200)
T smart00176 65 YIQGQCAIIMFDVTA-----RVTY-----KNVPNWHRDLVRVCENIPIVLCGNKVDV 111 (200)
T ss_pred hcCCCEEEEEEECCC-----hHHH-----HHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 567777777643321 2222 1123455666666778888888888885
No 225
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=24.00 E-value=2.3e+02 Score=22.82 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHHHHHHHHhcCCCC
Q psy17689 40 EGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPK 93 (216)
Q Consensus 40 ~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~t~~~~~~sg~~~ 93 (216)
.|++-.++..+-...++++.+.+.+. +++..+++|| -..++..++..+.|+|.
T Consensus 115 ~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVs-Hg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 115 GGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACS-HGDVIKSVLADALGMHL 168 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEe-CChHHHHHHHHHhCCCH
Confidence 46788888888888888877765443 3555566666 34445445555555443
No 226
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.00 E-value=2.4e+02 Score=21.85 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
...|+|++..|....-.....+.+.+| ++.+++.+++.++. ++++...|+.
T Consensus 58 ~~~d~v~i~~G~ND~~~~~~~~~~~~~---~~~li~~~~~~~~~-~il~~~~p~~ 108 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNTSLEMIKDN---IRSMVELAEANGIK-VILASPLPVD 108 (183)
T ss_pred cCCCEEEEEeccCccccCCCHHHHHHH---HHHHHHHHHHCCCc-EEEEeCCCcC
Confidence 467999999887642211233344444 55666777665543 3444556664
No 227
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=23.99 E-value=1.7e+02 Score=25.28 Aligned_cols=49 Identities=6% Similarity=0.265 Sum_probs=29.1
Q ss_pred EEEcCCccc-cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchh
Q psy17689 15 VLTRLNYAL-SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVD 79 (216)
Q Consensus 15 v~~~~~~~~-~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd 79 (216)
...+.+.++ ++++|+||++... ..++++.+.+.++ .|+.+++.++|-++
T Consensus 59 ~~~~~~~~~~~~~~D~vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 59 LRATTDLAEALADADLILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred eEEeCCHHHHHhCCCEEEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 334556664 7899999998641 1123333444444 56777777776544
No 228
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=23.89 E-value=1.1e+02 Score=24.30 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=28.7
Q ss_pred HhcCCCCCCEEeeccchhHHHHHHHHHHHhCCC
Q psy17689 87 KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119 (216)
Q Consensus 87 ~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~ 119 (216)
+.++.+.++|+.+|....+..+.+++|+.+|.+
T Consensus 144 ~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~ 176 (198)
T PF02782_consen 144 ELTGIPIRRIRVSGGGAKNPLWMQILADVLGRP 176 (198)
T ss_dssp HHHTSCESEEEEESGGGGSHHHHHHHHHHHTSE
T ss_pred ccccccceeeEeccccccChHHHHHHHHHhCCc
Confidence 345889999999999999999999999999854
No 229
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=23.76 E-value=3.6e+02 Score=23.90 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=38.3
Q ss_pred cCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC--chhHHHHHHHHhcCCCCCCEEeec
Q psy17689 24 SEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN--PVDILTYVSWKLSGFPKNRVIGSG 100 (216)
Q Consensus 24 ~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN--Pvd~~t~~~~~~sg~~~~~viG~G 100 (216)
.++.|+|+| |+|... +.+.+..-..-+..++..+....|+..++|+.- .-+.+.........++...+| .
T Consensus 194 ~~~~D~ViIDTaGr~~-----~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~~~~giI-l- 266 (318)
T PRK10416 194 ARGIDVLIIDTAGRLH-----NKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAVGLTGII-L- 266 (318)
T ss_pred hCCCCEEEEeCCCCCc-----CCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhCCCCEEE-E-
Confidence 477899999 666432 122222223344445555556678886666653 233443322212234455554 3
Q ss_pred cchhH
Q psy17689 101 TNLDS 105 (216)
Q Consensus 101 t~lds 105 (216)
|-+|.
T Consensus 267 TKlD~ 271 (318)
T PRK10416 267 TKLDG 271 (318)
T ss_pred ECCCC
Confidence 66665
No 230
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=23.73 E-value=1.7e+02 Score=24.00 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=28.5
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
++++|.+|+...... +..+ .-++++.+.+.+.+++.-++++.|-.|.-
T Consensus 83 ~~~~~~~ilvfD~~~-----~~s~-----~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 83 YIHGQCAIIMFDVTA-----RLTY-----KNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred cccccEEEEEEeCCC-----HHHH-----HHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 566776666544321 2211 12244556666667777888889998863
No 231
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.73 E-value=3.8e+02 Score=22.41 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCchhH--HHHHHHHhcCCCCCCEEeeccchhHHHHHH
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVDI--LTYVSWKLSGFPKNRVIGSGTNLDSMRFRV 110 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPvd~--~t~~~~~~sg~~~~~viG~Gt~lds~R~~~ 110 (216)
+..-..++++.+.+.+.+.+=+-.++|... +..+-. .|| +-.+|.||.++..-++.
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~---~~p-~~~IGAGTVl~~~~a~~ 82 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAK---EVP-EALIGAGTVLNPEQLAQ 82 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHH---HCC-CCEEEEeeccCHHHHHH
Confidence 355567789999999999888888888432 222222 345 68899999999865554
No 232
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=23.69 E-value=4.1e+02 Score=21.75 Aligned_cols=61 Identities=20% Similarity=0.354 Sum_probs=33.1
Q ss_pred eEEEEEcCchhHHHHHHHHhcCCCC--CCEEeec---cchhHHHHHHHHHHHhCCCCCceeEEEEccC
Q psy17689 69 CTLLIVSNPVDILTYVSWKLSGFPK--NRVIGSG---TNLDSMRFRVLLAQKLGLSPESVYGFIIGEH 131 (216)
Q Consensus 69 ~iiivvtNPvd~~t~~~~~~sg~~~--~~viG~G---t~lds~R~~~~la~~l~v~~~~v~~~v~G~H 131 (216)
-.+.++||-..-+.....+..|+.. ..+++.. ..-..-..-..+.+++|++|++ .+++|.+
T Consensus 112 ~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~--~l~IGDs 177 (229)
T PRK13226 112 CVWGIVTNKPEYLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTD--CVYVGDD 177 (229)
T ss_pred CeEEEECCCCHHHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCChhh--EEEeCCC
Confidence 3667888755444443445456543 2234321 1112222334567889999866 5777866
No 233
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.53 E-value=4e+02 Score=25.04 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc--CchhHHHHHHHHhcCCCCCCEEeecc
Q psy17689 25 EGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS--NPVDILTYVSWKLSGFPKNRVIGSGT 101 (216)
Q Consensus 25 ~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvd~~t~~~~~~sg~~~~~viG~Gt 101 (216)
.+.|+|+| |+|.+.+.. ..+.-++++...+....|.-.++|++ -=.+.+..++..+..++...+| . |
T Consensus 298 ~~~D~VLIDTaGr~~rd~--------~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glI-l-T 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNL--------EQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRIL-L-T 367 (432)
T ss_pred CCCCEEEEeCCCCCccCH--------HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEE-E-E
Confidence 48898888 666542111 12233333333333333434444443 2233566677777888888886 5 8
Q ss_pred chhH
Q psy17689 102 NLDS 105 (216)
Q Consensus 102 ~lds 105 (216)
-||.
T Consensus 368 KLDE 371 (432)
T PRK12724 368 KLDE 371 (432)
T ss_pred cccC
Confidence 8887
No 234
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=23.50 E-value=2.4e+02 Score=22.97 Aligned_cols=37 Identities=8% Similarity=-0.051 Sum_probs=21.8
Q ss_pred cccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHH
Q psy17689 22 ALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNI 62 (216)
Q Consensus 22 ~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i 62 (216)
+++.++|.||+..|.+. .-.+.|.+|-.+...+-+.+
T Consensus 36 ~~l~~~D~lilPGG~~~----~~~~~L~~~~~~~~~i~~~~ 72 (198)
T cd03130 36 EELPDADGLYLGGGYPE----LFAEELSANQSMRESIRAFA 72 (198)
T ss_pred CCCCCCCEEEECCCchH----HHHHHHHhhHHHHHHHHHHH
Confidence 55778999999887542 12445555544444444443
No 235
>PTZ00413 lipoate synthase; Provisional
Probab=23.34 E-value=3.6e+02 Score=25.06 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEc
Q psy17689 25 EGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75 (216)
Q Consensus 25 ~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvt 75 (216)
.++..+|+|+|. |+|+-..=+..+.+.++.|++..|+..+-+..
T Consensus 192 ~Gl~~~VVTSv~-------RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ievli 235 (398)
T PTZ00413 192 MGVDYIVMTMVD-------RDDLPDGGASHVARCVELIKESNPELLLEALV 235 (398)
T ss_pred cCCCEEEEEEEc-------CCCCChhhHHHHHHHHHHHHccCCCCeEEEcC
Confidence 456788888873 33333344778888889999888877665553
No 236
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=23.31 E-value=2.1e+02 Score=26.53 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=7.7
Q ss_pred eeECCeeccccCcc
Q psy17689 142 VNVAGVNLREVNPA 155 (216)
Q Consensus 142 ~~v~g~~l~~~~~~ 155 (216)
+.++|+|...+-++
T Consensus 359 v~~~g~P~~KlSd~ 372 (394)
T TIGR01514 359 VECNGNPVAKLSDS 372 (394)
T ss_pred EEECCccceEecCC
Confidence 44567666555443
No 237
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=23.29 E-value=2.3e+02 Score=25.20 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=24.1
Q ss_pred CCeEEEEEcCchhHHHHHHHH--hcCC--CCCCEEeeccchh-HHHHHH
Q psy17689 67 PQCTLLIVSNPVDILTYVSWK--LSGF--PKNRVIGSGTNLD-SMRFRV 110 (216)
Q Consensus 67 p~~iiivvtNPvd~~t~~~~~--~sg~--~~~~viG~Gt~ld-s~R~~~ 110 (216)
+.++=+=-++|.+...++.+. ..|+ ++.+++=+ ..|| ..+++.
T Consensus 264 ~~gvR~DSGd~~~~~~~~~~~l~~~g~~~~~~~ii~s-g~l~~~~~i~~ 311 (343)
T cd01567 264 LLGVRLDSGDPVELIKKVRKHLDELGIDLNKKKIIIS-GDLDTEEAIEL 311 (343)
T ss_pred CcEEECCCCCHHHHHHHHHHHHHHcCCCCCCeEEEEE-CCCCHHHHHHH
Confidence 444444447888887776653 3455 55556655 4555 444444
No 238
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=23.29 E-value=2.1e+02 Score=24.38 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=8.3
Q ss_pred HHHHHHHHhhCCCeEEE
Q psy17689 56 KGIIPNIVKYSPQCTLL 72 (216)
Q Consensus 56 ~~i~~~i~~~~p~~iii 72 (216)
..++.++++.+|+++++
T Consensus 179 ~~~v~~~~~~~pd~v~~ 195 (336)
T cd06360 179 ASYLAQIPDDVPDAVFV 195 (336)
T ss_pred HHHHHHHHhcCCCEEEE
Confidence 34444455555555443
No 239
>PRK09330 cell division protein FtsZ; Validated
Probab=23.20 E-value=1.4e+02 Score=27.48 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=25.4
Q ss_pred ccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCc
Q psy17689 23 LSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNP 77 (216)
Q Consensus 23 ~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 77 (216)
.+.+||.|+|+||..-.-|- .-++++.++++. ++ --.+.++|.|
T Consensus 94 ~l~~~D~vfI~AGmGGGTGT-------GaapvIA~iake---~g-~ltvaVvt~P 137 (384)
T PRK09330 94 ALEGADMVFITAGMGGGTGT-------GAAPVVAEIAKE---LG-ILTVAVVTKP 137 (384)
T ss_pred HHcCCCEEEEEecCCCcccH-------HHHHHHHHHHHH---cC-CcEEEEEecC
Confidence 48999999999997543332 123444444433 22 2345666666
No 240
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=23.19 E-value=5.5e+02 Score=25.07 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=34.2
Q ss_pred HHHHHHhhCCCeEEEEEc---------C-chhHHHHHHHH--hcCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689 58 IIPNIVKYSPQCTLLIVS---------N-PVDILTYVSWK--LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 58 i~~~i~~~~p~~iiivvt---------N-Pvd~~t~~~~~--~sg~~~~~viG~Gt~lds~R~~~~la~~l~v 118 (216)
..+.+++..|++.+-.+. + |-|++-..+.. ..|.+.=||+-....++.++-.-..|++.|.
T Consensus 66 ~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~ 138 (593)
T PRK14040 66 RLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGA 138 (593)
T ss_pred HHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCC
Confidence 344555556776663333 2 55666665544 3466655665444555655555556666665
No 241
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=22.90 E-value=1.4e+02 Score=25.14 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=26.5
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~ 80 (216)
+++||++|++-.... +..+ . + ++..+.+.+.+++|+..+++++|=.|.
T Consensus 82 ~~~ad~vIlVyDit~-----~~Sf-~-~--~~~~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 82 YSDSDAVLLCFDISR-----PETV-D-S--ALKKWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred cCCCcEEEEEEECCC-----hHHH-H-H--HHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 567777776654321 1111 1 1 123344555666677777788888875
No 242
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.89 E-value=2.1e+02 Score=27.26 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=41.3
Q ss_pred cCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHH--HHHHhhCCCeEEEEEcCchhHH---HHHHHHhcCCCCCCEE
Q psy17689 24 SEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGII--PNIVKYSPQCTLLIVSNPVDIL---TYVSWKLSGFPKNRVI 97 (216)
Q Consensus 24 ~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~--~~i~~~~p~~iiivvtNPvd~~---t~~~~~~sg~~~~~vi 97 (216)
..+||+||+ |+++... ...+++..+. ..+++.+|+.+++|.+-=+..- -.+..+..+. .-|+
T Consensus 101 ~~~ADviiiNTC~V~~~----------Ae~k~~~~i~~l~~~k~~~p~~~i~v~GCmaq~~~~~~~~~~~~p~v--d~v~ 168 (509)
T PRK14327 101 TEDADVILLNTCAIREN----------AENKVFGEIGHLKHLKRENPDLLIGVCGCMSQEESVVNKILKKYQHV--DMIF 168 (509)
T ss_pred cCCCCEEEEECCCCccH----------HHHHHHHHHHHHHHHHhhCCCCEEEEEcchhcCcCchHHHHhcCCCC--CEEE
Confidence 557999888 5555421 1233444442 4567778999888877432211 1223332222 3577
Q ss_pred eeccchhHHHHHHHHHHHh
Q psy17689 98 GSGTNLDSMRFRVLLAQKL 116 (216)
Q Consensus 98 G~Gt~lds~R~~~~la~~l 116 (216)
|. ..+ .++-.++.+.+
T Consensus 169 g~-~~~--~~l~~~l~~~~ 184 (509)
T PRK14327 169 GT-HNI--HRLPEILKEAY 184 (509)
T ss_pred CC-CCH--HHHHHHHHHHh
Confidence 77 433 34555555443
No 243
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.79 E-value=4e+02 Score=22.05 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcCch--hHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEc
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSNPV--DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG 129 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtNPv--d~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G 129 (216)
..-..++++++.+.+...+=|..+.|. +++..+..++ ++=++|.||.++..-++..+ ..|.+ +++-
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~----p~~~vGAGTV~~~e~a~~a~--~aGA~------FivS 86 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF----PDLLVGAGTVLTAEQAEAAI--AAGAQ------FIVS 86 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH----TTSEEEEES--SHHHHHHHH--HHT-S------EEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC----CCCeeEEEeccCHHHHHHHH--HcCCC------EEEC
Confidence 344567889999999998888888883 3444444343 35789999999988766644 45543 5555
Q ss_pred cCCCCccc
Q psy17689 130 EHGDSSVP 137 (216)
Q Consensus 130 ~HGds~vp 137 (216)
.|-+..+.
T Consensus 87 P~~~~~v~ 94 (196)
T PF01081_consen 87 PGFDPEVI 94 (196)
T ss_dssp SS--HHHH
T ss_pred CCCCHHHH
Confidence 55443333
No 244
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=22.64 E-value=3e+02 Score=21.48 Aligned_cols=72 Identities=11% Similarity=0.086 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhCCCeEEEEEcC-chhHHHHHHHHhcCCCC--CCEEeeccc-------hhHHHHHHHHHHHhCCCCCcee
Q psy17689 55 FKGIIPNIVKYSPQCTLLIVSN-PVDILTYVSWKLSGFPK--NRVIGSGTN-------LDSMRFRVLLAQKLGLSPESVY 124 (216)
Q Consensus 55 ~~~i~~~i~~~~p~~iiivvtN-Pvd~~t~~~~~~sg~~~--~~viG~Gt~-------lds~R~~~~la~~l~v~~~~v~ 124 (216)
+..+.+.+.+... .+.++|| |.+.....+ +..|+.. ..|++.... -..-.+-..+.+++|++|+++
T Consensus 86 ~~g~~~~L~~L~~--~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~- 161 (184)
T TIGR01993 86 DPELRNLLLRLPG--RKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKALREAGVDPERA- 161 (184)
T ss_pred CHHHHHHHHhCCC--CEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHHHHhCCCccce-
Confidence 3344444444432 3455665 444444444 3334432 356655321 112234445667888888653
Q ss_pred EEEEccC
Q psy17689 125 GFIIGEH 131 (216)
Q Consensus 125 ~~v~G~H 131 (216)
.++|.+
T Consensus 162 -l~vgD~ 167 (184)
T TIGR01993 162 -IFFDDS 167 (184)
T ss_pred -EEEeCC
Confidence 566765
No 245
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=22.56 E-value=2e+02 Score=25.06 Aligned_cols=25 Identities=8% Similarity=0.090 Sum_probs=21.6
Q ss_pred HHhHHHHHHHHHHHHhhCCCeEEEE
Q psy17689 49 ERNVNIFKGIIPNIVKYSPQCTLLI 73 (216)
Q Consensus 49 ~~N~~i~~~i~~~i~~~~p~~iiiv 73 (216)
+...+-++++++.+.+..|++++++
T Consensus 30 ~~~~~al~~l~~~l~~~~Pd~IVVi 54 (282)
T TIGR02298 30 QGAIDGHKEISRRAKEMGVDTIVVF 54 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 5678899999999999999987665
No 246
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.45 E-value=3e+02 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCchhHHHHHH-HHhcCCCCCCEEeeccch
Q psy17689 55 FKGIIPNIVKYSPQCTLLIVSNPVDILTYVS-WKLSGFPKNRVIGSGTNL 103 (216)
Q Consensus 55 ~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~-~~~sg~~~~~viG~Gt~l 103 (216)
+..++.+|+..+|++++ +.+.|-|....+- .+..|+.+ ++++.+...
T Consensus 192 ~~~~v~~ik~a~pD~v~-~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~~~ 239 (357)
T cd06337 192 FSSQINAFKREGVDIVT-GFAIPPDFATFWRQAAQAGFKP-KIVTIAKAL 239 (357)
T ss_pred HHHHHHHHHhcCCCEEE-eCCCccHHHHHHHHHHHCCCCC-CeEEEeccc
Confidence 66788889999999965 4555666433222 24568854 566654444
No 247
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=22.38 E-value=1.6e+02 Score=24.53 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=30.6
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
++++|+++++...... ..++-+ .+.+...+.+++|+.-+++++|=.|+.
T Consensus 70 ~~~~d~illvfdis~~---~Sf~~i------~~~w~~~~~~~~~~~piiLVgnK~DL~ 118 (222)
T cd04173 70 YPDSDAVLICFDISRP---ETLDSV------LKKWQGETQEFCPNAKVVLVGCKLDMR 118 (222)
T ss_pred ccCCCEEEEEEECCCH---HHHHHH------HHHHHHHHHhhCCCCCEEEEEECcccc
Confidence 5788888887654321 122221 122334566678888899999998864
No 248
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=22.32 E-value=1.9e+02 Score=27.34 Aligned_cols=20 Identities=10% Similarity=0.017 Sum_probs=15.0
Q ss_pred EEEcCCccc-cCCccEEEEcC
Q psy17689 15 VLTRLNYAL-SEGSRIVIVTA 34 (216)
Q Consensus 15 v~~~~~~~~-~~daDivvita 34 (216)
+..+.++++ +++||+|+.+.
T Consensus 68 i~~~~~~~ea~~~aD~Vieav 88 (495)
T PRK07531 68 LTFCASLAEAVAGADWIQESV 88 (495)
T ss_pred eEeeCCHHHHhcCCCEEEEcC
Confidence 455667864 99999988764
No 249
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=22.32 E-value=2.2e+02 Score=21.20 Aligned_cols=13 Identities=31% Similarity=0.703 Sum_probs=6.1
Q ss_pred CCeEEEEEcCchh
Q psy17689 67 PQCTLLIVSNPVD 79 (216)
Q Consensus 67 p~~iiivvtNPvd 79 (216)
++.-++++.|-.|
T Consensus 104 ~~~pivvv~nK~D 116 (164)
T smart00175 104 PNVVIMLVGNKSD 116 (164)
T ss_pred CCCeEEEEEEchh
Confidence 3444444445444
No 250
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=22.31 E-value=1.6e+02 Score=25.74 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=35.1
Q ss_pred CCccEEEEcCCCCCCC---CcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 25 EGSRIVIVTAGVRQRE---GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 25 ~daDivvitag~~~k~---g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
+|.|+|+|..|...-- ......-...-..-++++...+++..|.++|++++-|.-
T Consensus 118 ~dwklVtI~IG~ND~c~~~~~~~~~~~~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~ 175 (288)
T cd01824 118 NDWKLITIFIGGNDLCSLCEDANPGSPQTFVKNLRKALDILRDEVPRAFVNLVGLLNV 175 (288)
T ss_pred cCCcEEEEEecchhHhhhcccccCcCHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCc
Confidence 3788899998864210 000001123334557778888889999999988886654
No 251
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.20 E-value=2.1e+02 Score=26.19 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=37.1
Q ss_pred cccCCccEEEE-cCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEE--cCchhHHHHHHHHhcCC------
Q psy17689 22 ALSEGSRIVIV-TAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIV--SNPVDILTYVSWKLSGF------ 91 (216)
Q Consensus 22 ~~~~daDivvi-tag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivv--tNPvd~~t~~~~~~sg~------ 91 (216)
+.+.+.|+|+| |+|.+. +.+.+. . ....+... .|.-.++|+ ++-.+.+..+++++...
T Consensus 211 ~~l~~~DlVLIDTaG~~~-----~d~~l~------e-~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~ 278 (374)
T PRK14722 211 AELRNKHMVLIDTIGMSQ-----RDRTVS------D-QIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKA 278 (374)
T ss_pred HHhcCCCEEEEcCCCCCc-----ccHHHH------H-HHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhccccc
Confidence 34789999999 777542 111111 1 11222222 343344443 45567777777766533
Q ss_pred ---CCCCEEeeccchhH
Q psy17689 92 ---PKNRVIGSGTNLDS 105 (216)
Q Consensus 92 ---~~~~viG~Gt~lds 105 (216)
+...+| . |-||.
T Consensus 279 ~~~~~~~~I-~-TKlDE 293 (374)
T PRK14722 279 ALPDLAGCI-L-TKLDE 293 (374)
T ss_pred ccCCCCEEE-E-ecccc
Confidence 245555 4 78887
No 252
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=22.14 E-value=1.1e+02 Score=26.49 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=45.5
Q ss_pred CCccc-cCCc--cEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh---HHHHHHHHhcCCC
Q psy17689 19 LNYAL-SEGS--RIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD---ILTYVSWKLSGFP 92 (216)
Q Consensus 19 ~~~~~-~~da--Divvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd---~~t~~~~~~sg~~ 92 (216)
.+.+| ++++ |++|=+.|.| |- +=+++.+.+.+++++.+|.=+|||.. +...-+++++.
T Consensus 96 ~~L~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~-- 159 (255)
T PF03949_consen 96 GSLLEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTD-- 159 (255)
T ss_dssp SSHHHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTT--
T ss_pred cCHHHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCC--
Confidence 35554 7888 8877777644 31 23567888999999999999999976 66677777763
Q ss_pred CCCEEeeccchh
Q psy17689 93 KNRVIGSGTNLD 104 (216)
Q Consensus 93 ~~~viG~Gt~ld 104 (216)
-+-+|++|+-.+
T Consensus 160 g~ai~AtGSpf~ 171 (255)
T PF03949_consen 160 GRAIFATGSPFP 171 (255)
T ss_dssp SEEEEEESS---
T ss_pred ceEEEecCCccC
Confidence 123578876544
No 253
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=22.12 E-value=3.6e+02 Score=23.44 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=28.2
Q ss_pred CCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHH
Q psy17689 19 LNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDIL 81 (216)
Q Consensus 19 ~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~ 81 (216)
++.++...+|+||++.-... . . +..+.+... +|++.++.+.|=.+..
T Consensus 65 ~~~~~~~~~D~vilavK~~~----~--------~----~~~~~l~~~~~~~~~iv~lqNG~~~~ 112 (313)
T PRK06249 65 RSAEDMPPCDWVLVGLKTTA----N--------A----LLAPLIPQVAAPDAKVLLLQNGLGVE 112 (313)
T ss_pred cchhhcCCCCEEEEEecCCC----h--------H----hHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 44556788999999853221 1 1 222233333 5788888888877643
No 254
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.93 E-value=2.9e+02 Score=23.97 Aligned_cols=37 Identities=5% Similarity=0.004 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHH
Q psy17689 44 RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDIL 81 (216)
Q Consensus 44 r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~ 81 (216)
+.+.......-++++++.+++..||.+| ++|||.-.+
T Consensus 24 ~~~~~~~~~~a~~~~~~~v~~~~pD~iv-vi~~dH~~~ 60 (277)
T cd07368 24 PAAQREICWHAYAICAERLAALQVTSVV-VIGDDHYTL 60 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEcCchHhh
Confidence 3466777889999999999999999755 567775543
No 255
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=21.82 E-value=2.5e+02 Score=22.40 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC--CCEEeeccc---hhHHHHHHHHHHHh-CCCCCceeEEE
Q psy17689 54 IFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK--NRVIGSGTN---LDSMRFRVLLAQKL-GLSPESVYGFI 127 (216)
Q Consensus 54 i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~--~~viG~Gt~---lds~R~~~~la~~l-~v~~~~v~~~v 127 (216)
.+....+.+.+..-...+.++||-..-......+..|+.+ ..+++.+.. -..-.+-..+.+++ |++|++ +++
T Consensus 98 ~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~--~v~ 175 (224)
T TIGR02254 98 LLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE--VLM 175 (224)
T ss_pred eCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh--eEE
Confidence 3333444444442226778888743333333344444432 466665321 13333444566778 988874 678
Q ss_pred EccC
Q psy17689 128 IGEH 131 (216)
Q Consensus 128 ~G~H 131 (216)
+|..
T Consensus 176 igD~ 179 (224)
T TIGR02254 176 IGDS 179 (224)
T ss_pred ECCC
Confidence 8864
No 256
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=21.73 E-value=1.7e+02 Score=25.76 Aligned_cols=35 Identities=9% Similarity=-0.052 Sum_probs=28.4
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 43 SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 43 ~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
.+.+..+.-.+-++++.+.+++..|+.+||+ +||.
T Consensus 25 ~~~~~~~~~~~a~~~i~~~i~~~~PDvvVii-~~dH 59 (284)
T PRK13366 25 TGEPYWQPVFKGYEFSKQWEKEEKPDVIFLV-YNDH 59 (284)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCEEEEE-cCCc
Confidence 4566778889999999999999999986655 5565
No 257
>PRK07090 class II aldolase/adducin domain protein; Provisional
Probab=21.55 E-value=5e+02 Score=22.31 Aligned_cols=100 Identities=14% Similarity=0.255 Sum_probs=56.2
Q ss_pred CccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCCC------
Q psy17689 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPK------ 93 (216)
Q Consensus 20 ~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~~------ 93 (216)
++++++-.|++++...-...+|.. .-|... .+=..|-+..|+.--|+.+=|...++...... .+|.
T Consensus 73 ~~~~lt~~Div~vd~dG~~v~G~~-----kPs~E~--~lH~~IYr~rPDv~AVvHtH~p~ata~s~~~~-~l~~~~~~~~ 144 (260)
T PRK07090 73 GFDEITASNLLLVDEDLNVLDGEG-----MPNPAN--RFHSWIYRARPDVNCIIHTHPPHVAALSMLEV-PLVVSHMDTC 144 (260)
T ss_pred ChhhCCHHHeEEECCCCCCCCCCC-----CCChhH--HHHHHHHHhCCCCCEEEEeCCHHHHHHHhcCC-CCCccchhHH
Confidence 577899999999964221112211 011111 13334445689999999999999887766432 2331
Q ss_pred ---C--CEEee--ccchhHHHHHHHHHHHhCCCCCceeEEEEccCC
Q psy17689 94 ---N--RVIGS--GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHG 132 (216)
Q Consensus 94 ---~--~viG~--Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~HG 132 (216)
+ -++|- |.-.++ .....+++.++- -+++++.|||
T Consensus 145 ~~~~~~~~~~~~~~ip~~~-~~a~~va~~l~~----~~avLL~nHG 185 (260)
T PRK07090 145 PLYDDCAFLKDWPGVPVGN-EEGEIISAALGD----KRAILLSHHG 185 (260)
T ss_pred hhccceeeccCcCCcCCCh-HHHHHHHHHhcc----CCEEEECCCC
Confidence 0 11110 011122 235567777762 2589999999
No 258
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=21.51 E-value=3.1e+02 Score=23.27 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=34.8
Q ss_pred cCCccEEEEcCCCCCCC-CcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc
Q psy17689 24 SEGSRIVIVTAGVRQRE-GESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS 75 (216)
Q Consensus 24 ~~daDivvitag~~~k~-g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt 75 (216)
++++|+||-+|+..... .....+.+..|+.-...+.+.+.+. +.. .++.+|
T Consensus 74 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~S 126 (322)
T PLN02662 74 VDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTS 126 (322)
T ss_pred HcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcc
Confidence 67899999999854221 1223467788999999999988876 444 344433
No 259
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=21.50 E-value=2e+02 Score=21.87 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=10.0
Q ss_pred HHHHHhhCCCeEEEEEcCchh
Q psy17689 59 IPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 59 ~~~i~~~~p~~iiivvtNPvd 79 (216)
...+.+.+++.-++++.|-.|
T Consensus 95 ~~~i~~~~~~~p~ivv~nK~D 115 (161)
T cd04124 95 YEELREYRPEIPCIVVANKID 115 (161)
T ss_pred HHHHHHhCCCCcEEEEEECcc
Confidence 333344444445555555555
No 260
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=21.46 E-value=4.5e+02 Score=22.17 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEEEcCchh--HHHHHHHHhc-CCCCCCEEeeccchhHHHHHHH
Q psy17689 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVD--ILTYVSWKLS-GFPKNRVIGSGTNLDSMRFRVL 111 (216)
Q Consensus 51 N~~i~~~i~~~i~~~~p~~iiivvtNPvd--~~t~~~~~~s-g~~~~~viG~Gt~lds~R~~~~ 111 (216)
+..-..++++.+.+.+...+=|..++|.. .+..+..++. .+| +=++|.||.++..-++..
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p-~~~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP-GMILGVGSIVDAATAALY 87 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC-CeEEeeEeCcCHHHHHHH
Confidence 45667789999999999988888887764 3433333332 355 568999999998766653
No 261
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.34 E-value=1.7e+02 Score=26.40 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=28.3
Q ss_pred CHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCch
Q psy17689 43 SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPV 78 (216)
Q Consensus 43 ~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 78 (216)
.+.+.......-++++++.+++..|+.+||+ +||.
T Consensus 23 ~~~~~~~~~~~a~~~l~~~v~~~~PD~iVV~-~sdH 57 (329)
T cd07369 23 PSPDVRARTEEATLKLGRTLTAARPDVIIAF-LDDH 57 (329)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhCCCEEEEE-cCCc
Confidence 4567778889999999999999999986655 4455
No 262
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=21.27 E-value=48 Score=24.16 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=5.6
Q ss_pred HHHHHHHhhCCCeEEEEEcC
Q psy17689 57 GIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 57 ~i~~~i~~~~p~~iiivvtN 76 (216)
++++.+.+..|+-.+-+.||
T Consensus 69 ~~i~~~~~~~~~~~i~i~TN 88 (119)
T PF13394_consen 69 ELIEYLKERGPEIKIRIETN 88 (119)
T ss_dssp HHHCTSTT-----EEEEEE-
T ss_pred HHHHHHHhhCCCceEEEEeC
Confidence 33344444443333334443
No 263
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=21.24 E-value=1.4e+02 Score=23.86 Aligned_cols=101 Identities=17% Similarity=0.165 Sum_probs=59.5
Q ss_pred cCCc--cEEEEcCCCCC--CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhcCCC-------
Q psy17689 24 SEGS--RIVIVTAGVRQ--REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP------- 92 (216)
Q Consensus 24 ~~da--Divvitag~~~--k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~sg~~------- 92 (216)
+++. |.|+.+|+.+. .....-.+.+..|+...+.+.+.+.+.+. ..++.++- ..+.. ...+.+
T Consensus 61 ~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~y~----~~~~~~~~e~~~~ 134 (236)
T PF01370_consen 61 LEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASVYG----DPDGEPIDEDSPI 134 (236)
T ss_dssp HHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGGGT----SSSSSSBETTSGC
T ss_pred ccccCceEEEEeeccccccccccccccccccccccccccccccccccc-cccccccc-ccccc----ccccccccccccc
Confidence 4555 99999998753 11135678899999999999999999987 44555443 21110 000100
Q ss_pred -CCCEEeeccchhHHHHHHHHHHHhCCCCCceeEE-EEccC
Q psy17689 93 -KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGF-IIGEH 131 (216)
Q Consensus 93 -~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~-v~G~H 131 (216)
+..-.|. +-....++-...+++.+++...++.. |+|.+
T Consensus 135 ~~~~~Y~~-~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 135 NPLSPYGA-SKRAAEELLRDYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp CHSSHHHH-HHHHHHHHHHHHHHHHTSEEEEEEESEEESTT
T ss_pred cccccccc-cccccccccccccccccccccccccccccccc
Confidence 1111222 22233333444555568888888874 88876
No 264
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=21.22 E-value=3e+02 Score=26.04 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=36.1
Q ss_pred HHHHHHHhhCCCeEEEE---Ec-------CchhHHHHHHHH--hcCCCCCCEEeeccchhHHHHHHHHHHHhCC
Q psy17689 57 GIIPNIVKYSPQCTLLI---VS-------NPVDILTYVSWK--LSGFPKNRVIGSGTNLDSMRFRVLLAQKLGL 118 (216)
Q Consensus 57 ~i~~~i~~~~p~~iiiv---vt-------NPvd~~t~~~~~--~sg~~~~~viG~Gt~lds~R~~~~la~~l~v 118 (216)
+..+.+.+..|+..+.. .. .|-|++-..+.+ ..|.+.=+++-..+.++.++-.-..+++.|.
T Consensus 63 e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~ 136 (467)
T PRK14041 63 ERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGA 136 (467)
T ss_pred HHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCC
Confidence 34445555556555543 21 366766665543 3477766777665666666555556666665
No 265
>KOG2882|consensus
Probab=21.15 E-value=1.8e+02 Score=26.01 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCCCceeEEEEccC
Q psy17689 81 LTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH 131 (216)
Q Consensus 81 ~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~~~v~~~v~G~H 131 (216)
+...+...+|-.| .|+|= .+-.+...|.++++++|+ +..++|.-
T Consensus 207 ~v~av~~~t~R~P-~v~GK----P~~~m~~~l~~~~~i~ps--Rt~mvGDR 250 (306)
T KOG2882|consen 207 FVAAVKFATGRQP-IVLGK----PSTFMFEYLLEKFNIDPS--RTCMVGDR 250 (306)
T ss_pred HHHHHHHHhcCCC-eecCC----CCHHHHHHHHHHcCCCcc--eEEEEccc
Confidence 4445555555444 34443 444556666666666654 23444543
No 266
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function.
Probab=21.08 E-value=1.2e+02 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 52 VNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 52 ~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
-++.+.++++|.++.|++.++++-|
T Consensus 94 ~~~a~kiad~I~~~~~~a~ll~idn 118 (196)
T PF03665_consen 94 SPVAEKIADKIAENFSDACLLMIDN 118 (196)
T ss_pred CHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 3567888999999999999988887
No 267
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=21.04 E-value=3e+02 Score=25.28 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=31.5
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEc-CchhHHH
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVS-NPVDILT 82 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvt-NPvd~~t 82 (216)
.++||+||++...|.++.. . .+..-+.+....+.++ .+..++|+-| -|....-
T Consensus 73 ~~~aDvvii~vptp~~~~~-~-----~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~ 127 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDH-E-----PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATE 127 (415)
T ss_pred cccCCEEEEEcCCCCCCCC-C-----cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHH
Confidence 4589999999988754331 1 1334445555666666 4555555554 4665443
No 268
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=20.91 E-value=3.5e+02 Score=23.85 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=35.1
Q ss_pred EEcCCccccCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhh-CCCeEEEEEcCchhHHH
Q psy17689 16 LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY-SPQCTLLIVSNPVDILT 82 (216)
Q Consensus 16 ~~~~~~~~~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPvd~~t 82 (216)
..+.+.+.+..+|+||++.-.. -..+..+.+..+ .|+.+++.+-|=....-
T Consensus 57 ~~~~~~~~~~~~Dlviv~vKa~----------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 57 VAATDAEALGPADLVIVTVKAY----------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred ccccChhhcCCCCEEEEEeccc----------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 3455667788999999986422 223455666666 57778888888777665
No 269
>PRK06298 type III secretion system protein; Validated
Probab=20.89 E-value=45 Score=30.33 Aligned_cols=52 Identities=27% Similarity=0.417 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCC
Q psy17689 66 SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119 (216)
Q Consensus 66 ~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~ 119 (216)
=|++- +|+|||-..-.-+-++-..-+.=.|+.-|+..-..|.+. +|++.|++
T Consensus 254 V~~Ad-VVItNPTH~AVALkYd~~~~~AP~VvAKG~d~~A~~Ir~-iA~e~~VP 305 (356)
T PRK06298 254 VKHAS-AVVSNPKDIAVAIGYMPEKYKAPWIIAMGINLRAKRIIA-EAEKYGVP 305 (356)
T ss_pred CCCCc-EEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHHHHHH-HHHHcCCC
Confidence 37764 467999775433323322223337999999999888877 78887765
No 270
>KOG0652|consensus
Probab=20.82 E-value=1.9e+02 Score=25.84 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhCC--CeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccchhHHHHHHHHHHHhCCCC
Q psy17689 55 FKGIIPNIVKYSP--QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSP 120 (216)
Q Consensus 55 ~~~i~~~i~~~~p--~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~lds~R~~~~la~~l~v~~ 120 (216)
+.++-.++.-+++ +.++|-.||-+|++-..+.+...++++==|-.-+..-.+|..+.=+++.++++
T Consensus 295 MLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~ 362 (424)
T KOG0652|consen 295 MLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD 362 (424)
T ss_pred HHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC
Confidence 4556667777755 56788899999999998888877776544434333334566666677777654
No 271
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=20.62 E-value=2.8e+02 Score=25.69 Aligned_cols=51 Identities=10% Similarity=-0.026 Sum_probs=38.8
Q ss_pred cCCccEEEEcCCCCC--CCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcC
Q psy17689 24 SEGSRIVIVTAGVRQ--REGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSN 76 (216)
Q Consensus 24 ~~daDivvitag~~~--k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtN 76 (216)
+.++|+||-+|+... ....+..+.+..|+.....+.+.+++.+. .+|.++.
T Consensus 182 ~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS 234 (436)
T PLN02166 182 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTST 234 (436)
T ss_pred ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECc
Confidence 788999999997532 22235678889999999999999998863 5666654
No 272
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=20.32 E-value=4.7e+02 Score=21.14 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=59.4
Q ss_pred CccccCCccEEEEcC-CCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHHHHHhc--CCCCCC-
Q psy17689 20 NYALSEGSRIVIVTA-GVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLS--GFPKNR- 95 (216)
Q Consensus 20 ~~~~~~daDivvita-g~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~~~~~s--g~~~~~- 95 (216)
++++++..|++++.. |... .|..+- .....+-. .|-+..|+..-++.+=|...++....... .+|...
T Consensus 38 ~~~~l~~~di~~v~~~g~~~-~g~~~p---s~e~~~H~----~iy~~~pdv~aVvH~H~~~a~a~s~~~~~~~~~~~~~~ 109 (193)
T TIGR03328 38 DKGRLTPEDFLVVDLQGKPV-SGGLKP---SAETLLHT----QLYRLTPGAGAVLHTHSVEATVLSRLYPSNGAFELEGY 109 (193)
T ss_pred ChhhCCcceEEEEcCCCCCC-CCCCCC---CcHHHHHH----HHHHhCCCCeEEEEcCCHHHHHHHhhcccCCeeeccch
Confidence 577899999988864 3221 121110 00111111 12245799999999999887665443221 122110
Q ss_pred -EE----eec------------cchhHHHHHHHHHHHhCCCCCceeEEEEccCCCCcccce
Q psy17689 96 -VI----GSG------------TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139 (216)
Q Consensus 96 -vi----G~G------------t~lds~R~~~~la~~l~v~~~~v~~~v~G~HGds~vp~~ 139 (216)
.+ |.. -...+.++...+++.+.-. .+..+.+|.+|| +..|
T Consensus 110 ~~~~~~~g~~~~~~~~~vp~~~~~~gs~ela~~~~~~l~~~-~~~~avll~nHG---v~~~ 166 (193)
T TIGR03328 110 EMLKALPGITTHEDKLTIPIFENTQDIARLADSVAPYLEAY-PDVPGVLIRGHG---LYAW 166 (193)
T ss_pred hhhhhhCCCcCCCCceEEeeecCCCChHHHHHHHHHHHhcC-CCCCEEEEcCCc---ceEE
Confidence 00 100 0245677888888888532 234789999999 5555
No 273
>PF02277 DBI_PRT: Phosphoribosyltransferase; InterPro: IPR003200 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin []. It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop [, ]. Vitamin B12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes []. The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin []. Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) []. One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction []. This entry represents bacterial- and archaeal-type nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase enzymes involved in dimethylbenzimidazole synthesis, as well as a group of proteins of unknown function. This function is essential to de novo cobalamin (vitamin B12) production in bacteria.; GO: 0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1L5F_A 1L4E_A 1JHO_A 1L4F_A 1D0V_A 1L4N_A 1L4G_A 1JHR_A 1L5M_A 1JHA_A ....
Probab=20.18 E-value=3.1e+02 Score=24.59 Aligned_cols=84 Identities=15% Similarity=0.241 Sum_probs=53.9
Q ss_pred CCccEEEEcCCCC--------CCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchhHHHHH--HHHhcCCCCC
Q psy17689 25 EGSRIVIVTAGVR--------QREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYV--SWKLSGFPKN 94 (216)
Q Consensus 25 ~daDivvitag~~--------~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd~~t~~--~~~~sg~~~~ 94 (216)
.++++.|+-.|.. +.|-|+|.+. .+-+..=++++.+..+.+.+-+++==..|-++-+-. +.-.+|+|++
T Consensus 99 ~g~~v~vvDvg~~~~gt~~~~~~~AMt~ee~-~~a~~~G~~~a~~~~~~g~~ll~~GE~giGnTTtAaav~~aL~g~~~~ 177 (327)
T PF02277_consen 99 AGADVKVVDVGLDGRGTRNIRKGPAMTREEA-EAALEAGIELADELIDSGADLLILGEMGIGNTTTAAAVLAALTGYDPE 177 (327)
T ss_dssp CTECCECEEEESSSSSB-BTTTSBSSCHHHH-HHHHHHHHHHHHHHHTTTESEEEEEEE-TTHHHHHHHHHHHCHT--HH
T ss_pred cCCeEEEeeccCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHhCCCHH
Confidence 4555555544432 3456888775 556777778888877888887777767888876543 3345699999
Q ss_pred CEEeeccchhHHHHH
Q psy17689 95 RVIGSGTNLDSMRFR 109 (216)
Q Consensus 95 ~viG~Gt~lds~R~~ 109 (216)
.++|.|+.+|...++
T Consensus 178 ~~vg~Gsg~~~~~~~ 192 (327)
T PF02277_consen 178 EVVGRGSGIDDNPLE 192 (327)
T ss_dssp HHS--TTTSSHHHHH
T ss_pred HhcCCCCCCChhhHH
Confidence 999988988875554
No 274
>PF13651 EcoRI_methylase: Adenine-specific methyltransferase EcoRI
Probab=20.06 E-value=1.7e+02 Score=26.51 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=27.7
Q ss_pred cCCccEEEEcCCCCCCCCcCHHHHHHHhHHHHHHHHHHHHhhCCCeEEEEEcCchh
Q psy17689 24 SEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79 (216)
Q Consensus 24 ~~daDivvitag~~~k~g~~r~dll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvd 79 (216)
++.|||||.- |- -..++|+..+|.++..+ +++++|=..
T Consensus 133 l~eADIVVTN------PP----------FSLFrEyv~~Li~~~Kk--FlIIGN~Na 170 (336)
T PF13651_consen 133 LKEADIVVTN------PP----------FSLFREYVAQLIEYDKK--FLIIGNINA 170 (336)
T ss_pred HhcCCEEEeC------CC----------cHHHHHHHHHHHHhCCC--EEEEecccc
Confidence 7888887762 22 24678999999999665 778887643
No 275
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=20.06 E-value=1.4e+02 Score=22.00 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhh--CCCeEEEEEcCchhHHHHHHHHhcCCCCCCEEeeccc------hhHHHHHHHHHHHhCCCCCcee
Q psy17689 53 NIFKGIIPNIVKY--SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTN------LDSMRFRVLLAQKLGLSPESVY 124 (216)
Q Consensus 53 ~i~~~i~~~i~~~--~p~~iiivvtNPvd~~t~~~~~~sg~~~~~viG~Gt~------lds~R~~~~la~~l~v~~~~v~ 124 (216)
.+.+++.+.+.+. .|...++|.-.|..-|.+--... ..--=+|...|.. -=+.++...+++.+|++|++|.
T Consensus 19 ~~~~~~~~~l~~~lgkPe~~~~v~~~~~~~m~f~g~~~-p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~ 97 (116)
T PTZ00397 19 AALSDIENAIADVLGKPLSYIMSGYDYQKHMRFGGSHD-GCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVY 97 (116)
T ss_pred HHHHHHHHHHHHHhCCChHHEEEEEeCCceEEECCCCC-ceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 3445566666665 46667766666665444321000 0000012212221 1135677888999999999998
Q ss_pred EEEE
Q psy17689 125 GFII 128 (216)
Q Consensus 125 ~~v~ 128 (216)
..+-
T Consensus 98 I~f~ 101 (116)
T PTZ00397 98 IEFK 101 (116)
T ss_pred EEEE
Confidence 7553
No 276
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=20.06 E-value=1.6e+02 Score=24.25 Aligned_cols=16 Identities=13% Similarity=0.364 Sum_probs=13.0
Q ss_pred cCCccEEEEcCCCCCC
Q psy17689 24 SEGSRIVIVTAGVRQR 39 (216)
Q Consensus 24 ~~daDivvitag~~~k 39 (216)
=++||+++++..++++
T Consensus 72 Pr~aDvllV~G~vt~~ 87 (183)
T PRK06411 72 PRQADLMIVAGTLTNK 87 (183)
T ss_pred CCceeEEEEEeCCCcc
Confidence 5679999999888654
Done!