RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17689
(216 letters)
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 322 bits (828), Expect = e-112
Identities = 130/197 (65%), Positives = 170/197 (86%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+++ S++VI+TAG RQ+EGESRL+LV+RNVNIFK IIPN+VKYSPQC LLIVSNPVD
Sbjct: 81 DYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
ILTYV+WK+SGFPKNRVIGSG NLDS RFR L+ ++LG+ P S +G+++GEHGDSSVPVW
Sbjct: 141 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 200
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
SGVNVAGV+L+ +NP +GT+ D E++ +H VV+SAYE+I+LKGYTSWAIGLS+A L
Sbjct: 201 SGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 260
Query: 200 TLLNNTNKIHAISTLIQ 216
+++ N ++H IST+I+
Sbjct: 261 SIMKNLRRVHPISTMIK 277
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 314 bits (808), Expect = e-109
Identities = 90/212 (42%), Positives = 131/212 (61%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
N F G L +Y+ + +++VTAG ++ GE+RL L ++NV I K + NI+K
Sbjct: 53 NHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMK 112
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
Y +L+VSNPVDI+TY+ K SG P +VIGSGT LDS+RFR LL++KLG+ ++V+
Sbjct: 113 YYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172
Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
G+IIGEHGDS +P+WS ++AG N+ E E+ K+ DV + II+ KG
Sbjct: 173 GYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKG 232
Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
T + I +SI ++ TLL N N I + T+I
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 264
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 312 bits (802), Expect = e-108
Identities = 83/212 (39%), Positives = 127/212 (59%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
+ F + +Y EG+R V++ AGV QR GE+RL L++RN +F ++P +++
Sbjct: 46 LHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLE 105
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
+P+ LL+ +NPVD++T V++ LSG P RV+GSGT LD+ RFR LLA+ L ++P+SV+
Sbjct: 106 AAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVH 165
Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+++GEHGDS V VWS V GV L E A G E+ ++ V +AY II KG
Sbjct: 166 AYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKG 225
Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
T + IG +A L +L + ++ +S
Sbjct: 226 ATYYGIGAGLARLVRAILTDEKGVYTVSAFTP 257
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 311 bits (800), Expect = e-108
Identities = 83/198 (41%), Positives = 137/198 (69%), Gaps = 1/198 (0%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+ + + +V++TAG RQ+ G+SRL LV VNI K I+PN+VK +P ++++NPVD
Sbjct: 69 DPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 128
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I T+V+ KL+G P+N++ GSGTNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W
Sbjct: 129 IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLW 188
Query: 140 SGVNVAGVNLREVNPAIGTEG-DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLT 198
+ GV + + P G + D ++ ++H +V N+AY+II KG T++AIG+S +
Sbjct: 189 ESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDII 248
Query: 199 YTLLNNTNKIHAISTLIQ 216
+L++TN+I +S++++
Sbjct: 249 EAVLHDTNRILPVSSMLK 266
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 310 bits (798), Expect = e-107
Identities = 79/213 (37%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 5 NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
N F V Y + +V++ AG Q+ GE+RL LV++N+ IF+ I+ +++
Sbjct: 52 NHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVM 111
Query: 64 KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
Q L+ +NPVDILTY +WK SG P RVIGSGT LD+ RFR LL + ++P++V
Sbjct: 112 ASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNV 171
Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
+ +IIGEHGD+ +PVWS + + +R++ + G E ++ ++ +V ++AY+II K
Sbjct: 172 HAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQ-KDLERIFVNVRDAAYQIIEKK 230
Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
G T + I + +A +T +L+N N I +S +
Sbjct: 231 GATYYGIAMGLARVTRAILHNENAILTVSAYLD 263
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 308 bits (792), Expect = e-106
Identities = 92/213 (43%), Positives = 128/213 (60%), Gaps = 2/213 (0%)
Query: 5 NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
N +F V T Y + + IV + AG Q+ GE+RL LVE+N+ IFKGI+ ++
Sbjct: 51 NHGKAFAPQPVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVM 110
Query: 64 KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
L+ +NPVDILTY +WK SG PK RVIGSGT LDS RFR +L++ G +P++V
Sbjct: 111 ASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNV 170
Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
IIGEHGD+ +PVWS NV GV + E+ EE ++ DV N+AY II K
Sbjct: 171 CAHIIGEHGDTELPVWSHANVGGVPVSELVEK-NDAYKQEELDQIVDDVKNAAYHIIEKK 229
Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
G T + + +S+A +T +L+N N I +ST +
Sbjct: 230 GATYYGVAMSLARITKAILHNENSILTVSTYLD 262
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 308 bits (791), Expect = e-106
Identities = 82/209 (39%), Positives = 125/209 (59%), Gaps = 1/209 (0%)
Query: 8 SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP 67
+ F + +YA +GS +VIV AGV Q+ GE+RL L+ RN + K I N+ KY+P
Sbjct: 49 TPFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP 108
Query: 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFI 127
+++V+NPVD+LTY K SG +V GSGT LD+ R R L+AQ G SP SV+ ++
Sbjct: 109 DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYV 168
Query: 128 IGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTS 187
IGEHGDS VPVWSG + G+ L+ + + + D++ +AYEII KG T
Sbjct: 169 IGEHGDSEVPVWSGAMIGGIPLQNMCQ-VCQKCDSKILENFAEKTKRAAYEIIERKGATH 227
Query: 188 WAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
+AI L++A + ++ + ++ +S ++
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLE 256
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 306 bits (786), Expect = e-106
Identities = 76/213 (35%), Positives = 122/213 (57%), Gaps = 3/213 (1%)
Query: 5 NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
+ + V + Y+ + +V++ AG Q+ GE+RL LV +N+ IFK I+ ++
Sbjct: 52 KHATPYSPTTVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVM 111
Query: 64 KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
L+ +NPVDIL Y +WK SG PK RVIGSGT LDS RFR+LL++ ++P SV
Sbjct: 112 ASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSV 171
Query: 124 YGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLK 183
IIGEHGD+ +PVWS N+AG L+ + + ++ ++AY+II+ K
Sbjct: 172 DAQIIGEHGDTELPVWSHANIAGQPLKTLLEQ--RPEGKAQIEQIFVQTRDAAYDIIQAK 229
Query: 184 GYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
G T + + + +A +T + N + + +S L++
Sbjct: 230 GATYYGVAMGLARITEAIFRNEDAVLTVSALLE 262
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 306 bits (786), Expect = e-105
Identities = 85/212 (40%), Positives = 132/212 (62%), Gaps = 1/212 (0%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
++ F + Y+ ++ + +V++TAG Q+ GE+RL LV +N+ I K I+ IV
Sbjct: 55 SNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVD 114
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
L+ +NPVDILTY +WKLSGFPKNRV+GSGT+LD+ RFR +A+ + + SV+
Sbjct: 115 SGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVH 174
Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+I+GEHGD+ PVWS N+ GV + E A E ++ K+ DV ++AYEII+LKG
Sbjct: 175 AYIMGEHGDTEFPVWSHANIGGVTIAEWVKA-HPEIKEDKLVKMFEDVRDAAYEIIKLKG 233
Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
T + I ++A ++ +LN+ N + +S +
Sbjct: 234 ATFYGIATALARISKAILNDENAVLPLSVYMD 265
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 304 bits (781), Expect = e-105
Identities = 80/212 (37%), Positives = 119/212 (56%), Gaps = 2/212 (0%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
D +F + Y+ + + +V++TAG Q+ GESRL LV +N+NI I+ +V
Sbjct: 51 EDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVD 110
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVY 124
L+ +NPVDILTY +WK SGFPK RVIGSGT+LDS R RV L ++ + P SV
Sbjct: 111 SGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVD 170
Query: 125 GFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKG 184
+I+GEHGDS +S + +R+V G ++ KL V N AY+II LKG
Sbjct: 171 AYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGV--SDDDLAKLEDGVRNKAYDIINLKG 228
Query: 185 YTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
T + IG ++ ++ +L + N + + +
Sbjct: 229 ATFYGIGTALMRISKAILRDENAVLPVGAYMD 260
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 298 bits (765), Expect = e-102
Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 2/196 (1%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
++ +++VI+TAG Q+ GESRL L+E+N +IF+ ++P I + +P LL+ SNPVD
Sbjct: 61 GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+LT ++ +L+ P VIGSGT LDS RFR L+AQ G+ +G+++GEHGDS V W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S VAG+ + + A + + K+ N+A II K T + IG ++A +T
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238
Query: 200 TLLNNTNKIHAISTLI 215
+L + + +S
Sbjct: 239 AVLRDRRAVLTVSAPT 254
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 289 bits (743), Expect = 2e-99
Identities = 60/197 (30%), Positives = 106/197 (53%), Gaps = 9/197 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +++ L SNPVD
Sbjct: 64 GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+L ++ + +VIG G LDS RFR +L+++ ++V G I+GEHGD+ VPV+
Sbjct: 124 LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVF 183
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S V+V G + +E +L D+ SA ++I KG T W +A +
Sbjct: 184 SKVSVDGTDPEF---------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVE 234
Query: 200 TLLNNTNKIHAISTLIQ 216
+L++T ++ S ++
Sbjct: 235 AILHDTGEVLPASVKLE 251
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 289 bits (742), Expect = 4e-99
Identities = 49/216 (22%), Positives = 100/216 (46%), Gaps = 10/216 (4%)
Query: 5 NDHSSFKGVNVLTRLN-YALSEGSRIVIVTAGV----RQREGESRLSLVERNVNIFKGII 59
D + + +N +A + +VI T G + R + ++ ++ + +
Sbjct: 47 QDAMANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVG 106
Query: 60 PNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
N+ + L+++SNPVD++T + ++GFP ++VIG+GT LD+ R + + + L
Sbjct: 107 TNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLD 166
Query: 120 PESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEI 179
P SV G+ +GEHG+S WS V V G + + + + + + + +
Sbjct: 167 PRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTL-----ADAGDIDLAAIEEEARKGGFTV 221
Query: 180 IRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI 215
+ KGYTS+ + S + ++ + + +S
Sbjct: 222 LNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRR 257
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 277 bits (712), Expect = 9e-95
Identities = 71/211 (33%), Positives = 110/211 (52%), Gaps = 19/211 (9%)
Query: 6 DHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKY 65
D F NV + + S S++VI T +S L +V+ NV++F+ ++P + Y
Sbjct: 57 DLEIFNLPNVEISKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHY 115
Query: 66 SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYG 125
S LL+ S PV+I+TYV+WKLS FP NRVIG G NLDS R + ++ L
Sbjct: 116 SQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEV 175
Query: 126 FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGY 185
++IGE G+ V WSG + + N A E++R+KG
Sbjct: 176 WVIGEQGEDKVLTWSGQEEVVSH------------------TSQVQLSNRAMELLRVKGQ 217
Query: 186 TSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
SW++GLS+A + +++NN K+H++S L +
Sbjct: 218 RSWSVGLSVADMVDSIVNNKKKVHSVSALAK 248
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 271 bits (696), Expect = 2e-92
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+L +GS I++VTAG+ ++ G +RL L +N I K I IV+ +P+ +L+V+NP+D
Sbjct: 63 DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TY+ WK SG P+N V G G LDS R + L + +IIGEHGDS
Sbjct: 123 VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRR--AWIIGEHGDSMFVAK 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S + G E + DV A E+I+ KG T + ++I +
Sbjct: 181 SLADFDGEVDWE---------------AVENDVRFVAAEVIKRKGATIFGPAVAIYRMVK 225
Query: 200 TLLNNTNKIHAISTLIQ 216
++ +T +I S ++Q
Sbjct: 226 AVVEDTGEIIPTSMILQ 242
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 268 bits (686), Expect = 2e-90
Identities = 96/214 (44%), Positives = 132/214 (61%), Gaps = 38/214 (17%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y++S GS++V++TAG RQ+EGESRL+LV+RNVNIFK IIPNIVK+SP C +
Sbjct: 83 DYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGT 142
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
WKLSG P +R+IGSG NLDS RFR L+ ++LG+ V G++IG+HGDS VW
Sbjct: 143 DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVIGQHGDSVPSVW 202
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL------- 192
SG+ A + H DVV+SAYE+I+LKGYTSWAIGL
Sbjct: 203 SGMWDAKL---------------------HKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241
Query: 193 ----------SIASLTYTLLNNTNKIHAISTLIQ 216
S+A L T++ + ++H +ST+++
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVK 275
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 261 bits (669), Expect = 4e-88
Identities = 66/199 (33%), Positives = 112/199 (56%), Gaps = 9/199 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S IVI+TAG+ ++ G +R L+ +N I K + NI+K+S +++VSNP+D
Sbjct: 63 DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I+T+V+W SG PK RVIG LD+ RFR +A +LG+S + + ++G HGD+ VPV
Sbjct: 123 IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVV 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
VAG+ + ++ PA E KL N EI+ +G +A S+ +
Sbjct: 183 KYTTVAGIPISDLLPA-------ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEM 235
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+++ + ++ + ++
Sbjct: 236 VESIVLDRKRVLPCAVGLE 254
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 253 bits (648), Expect = 6e-85
Identities = 61/198 (30%), Positives = 107/198 (54%), Gaps = 8/198 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y +E S + I+TAG+ + G SR L+ +N I G+ V+ SP T+++V+NP+D
Sbjct: 63 DYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TYV+++ SGFP NRV+G LD+ RFR +A++L +S V ++G HGD+ VP+
Sbjct: 123 VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPLP 182
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLT 198
V G+ + ++ ++ + EI+ L G ++W A G + A +T
Sbjct: 183 RYTTVGGIPVPQLIDD-------ARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEMT 235
Query: 199 YTLLNNTNKIHAISTLIQ 216
+L + +I +
Sbjct: 236 EAILKDNKRILPCAAYCD 253
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 248 bits (636), Expect = 4e-83
Identities = 61/197 (30%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
N + + S +VI+T+GV ++EG SR+ L + N I I + + +++NPVD
Sbjct: 68 NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVITNPVD 126
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++TY + S F +N+V G GT+LDS+RF+V +A+ G+ + V IIGEHGDS VP+
Sbjct: 127 VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLL 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTY 199
S ++ G+ +++ ++ DV +IIRLKG + + +I ++
Sbjct: 187 SATSIGGIPIQKF-----ERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVR 241
Query: 200 TLLNNTNKIHAISTLIQ 216
++NN ++ +S +
Sbjct: 242 CIVNNEKRLLTLSAYVD 258
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 245 bits (629), Expect = 5e-82
Identities = 65/198 (32%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y GS IV+VTAG+ ++ G +R L+E N N + I Y+ ++I +NPVD
Sbjct: 61 SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TYV +K +GFP+ RVIG LDS R ++QKLG+S +SV ++G HG PV
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLT 198
+V GV L + EE ++ ++ VN+ +I L+GY+S +
Sbjct: 181 RLSSVGGVPLEHLMSK-------EEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 199 YTLLNNTNKIHAISTLIQ 216
+ ++ +I+ S +Q
Sbjct: 234 EAIKRDSKRIYPYSLYLQ 251
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 242 bits (621), Expect = 1e-80
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 4/199 (2%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA GS +VI+TA + R + R L+ N I + + KY P ++ ++NP+D
Sbjct: 66 DYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
++ K+SG P N+V G LDS RFR +AQ G++ V +IG HGD VP
Sbjct: 126 VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPAT 185
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
S V+V GV L E+ ++ + E+ G +A + +
Sbjct: 186 SSVSVGGVPLSSFIKQGLI--TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAAAVKM 243
Query: 198 TYTLLNNTNKIHAISTLIQ 216
L + + S
Sbjct: 244 AEAYLKDKKAVVPCSAFCS 262
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 240 bits (614), Expect = 1e-79
Identities = 59/199 (29%), Positives = 105/199 (52%), Gaps = 4/199 (2%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA EG+ +VIVTAGV ++ G SR L+ N+ + + + I KY+P+ ++ ++NP+D
Sbjct: 69 DYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLD 128
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+ + K SG P ++V+G LDS RFR L+++ +S E V F++G HGDS VP+
Sbjct: 129 AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHGDSMVPLA 188
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
VAG+ L ++ ++ K+ + EI+ L G +A S +
Sbjct: 189 RYSTVAGIPLPDL--VKMGWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAASAIQM 246
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+ L + ++ ++ +
Sbjct: 247 AESYLKDKKRVLPVAAQLS 265
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 239 bits (613), Expect = 2e-79
Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 4/199 (2%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NY + S +VI+TAGV ++ +R L+ N I + N+ KY P ++ ++NP+D
Sbjct: 76 NYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD 135
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+ Y + SG P N+V G LDS RFR L++ LG+ P V ++G HGD +P+
Sbjct: 136 AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPLT 195
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
S V + G+ L + + ++ EI+ L G +A S ++
Sbjct: 196 SSVTIGGILLSDFVEQGKI--THSQINEIIKKTAFGGGEIVELLKTGSAFYAPAASAVAM 253
Query: 198 TYTLLNNTNKIHAISTLIQ 216
L ++ + ST +
Sbjct: 254 AQAYLKDSKSVLVCSTYLT 272
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 237 bits (608), Expect = 8e-79
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 4/199 (2%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y E S +VIVTAGV ++ G SR L+ N+ + + + I P ++ ++NP+D
Sbjct: 67 DYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLD 126
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
I+ + K SG P N+++G LDS RFR LA +L +S + V +++G HGD+ VP+
Sbjct: 127 IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTMVPLT 186
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
NVAGV+L ++ E + + + EI+ L G +A + +
Sbjct: 187 KMSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAGIQM 244
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+ L + I + ++
Sbjct: 245 AESFLKDKKMILPCAAKVK 263
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 237 bits (606), Expect = 1e-78
Identities = 55/199 (27%), Positives = 102/199 (51%), Gaps = 9/199 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 64 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 123
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY++ ++SGFPK RVIG LD+ R+R +A + G+S E V ++G HGD VP+
Sbjct: 124 AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLP 183
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
++G+ + E + ++ EI+ L G +A + A +
Sbjct: 184 RFSCISGIPVSEFIAP-------DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQM 236
Query: 198 TYTLLNNTNKIHAISTLIQ 216
+L + ++ ++ +
Sbjct: 237 VEAVLKDKKRVMPVAAYLT 255
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 236 bits (605), Expect = 3e-78
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 7/202 (3%)
Query: 20 NYALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIV 74
Y G+ +VIVTAG + G+S R L+ N I I +I K P +++V
Sbjct: 66 TYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVV 125
Query: 75 SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
+NPVD++ + + SG PKN++IG G LD+ R + ++QKL + P V I+G HG+
Sbjct: 126 TNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNK 185
Query: 135 SVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSI 194
V + + V G+ L+E E + VN+A EI+ L A +I
Sbjct: 186 MVLLKRYITVGGIPLQEFINNKLI--SDAELEAIFDRTVNTALEIVNLHASPYVAPAAAI 243
Query: 195 ASLTYTLLNNTNKIHAISTLIQ 216
+ + L + K+ STL++
Sbjct: 244 IEMAESYLKDLKKVLICSTLLE 265
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 235 bits (601), Expect = 1e-77
Identities = 65/199 (32%), Positives = 104/199 (52%), Gaps = 9/199 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S +V++TAG+ ++ G SR LV N I K I +I K+SP +++++NPVD
Sbjct: 72 DYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVD 131
Query: 80 ILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVW 139
+TY +K +GFPK RVIG LD+ RFR +AQ+L LS + + GF++G HGD VP+
Sbjct: 132 AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGHGDDMVPLV 191
Query: 140 SGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASL 197
G+ L + P E + EI+ L G +A S+ +
Sbjct: 192 RYSYAGGIPLETLIPK-------ERLEAIVERTRKGGGEIVGLLGNGSAYYAPAASLVEM 244
Query: 198 TYTLLNNTNKIHAISTLIQ 216
T +L + ++ ++
Sbjct: 245 TEAILKDQRRVLPAIAYLE 263
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 232 bits (594), Expect = 1e-76
Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 9/203 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGE-----SRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
A G+ VIVTAG+ + G+ SR L+ N I + I NI KY P+ +++V+
Sbjct: 73 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132
Query: 76 NPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
NP+D + V + SG P N + G LDS RFR +A L +SP V +IG HGD
Sbjct: 133 NPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCM 192
Query: 136 VPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLS 193
VP+ + V G +++ ++ ++ S EI+R +G +A S
Sbjct: 193 VPLVRYITVNGYPIQKFIKDGVV--TEKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAAS 250
Query: 194 IASLTYTLLNNTNKIHAISTLIQ 216
++ + LN+ ++ S
Sbjct: 251 AVAMATSFLNDEKRVIPCSVYCN 273
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 157 bits (399), Expect = 3e-47
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 7/207 (3%)
Query: 6 DHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
H F+G+N+ T ++ ++ + G ++EG +R L++ N I + +I
Sbjct: 55 RHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKS 114
Query: 65 YSPQCTLLIV-SNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESV 123
Y P C +I+ NP DI V+ SG ++V LDS R + LA+ G+ V
Sbjct: 115 YCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLV 173
Query: 124 YG-FIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRL 182
G HG+ S V G L ++ E++ +L VV II+L
Sbjct: 174 TNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTDKL--TNEQWAELKQRVVKGGANIIKL 231
Query: 183 KGYTSW-AIGLSIASLTYTLLNNTNKI 208
+G +S+ + + +
Sbjct: 232 RGRSSFQSPSYVSIEMIRAAMGGEAFR 258
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 123 bits (312), Expect = 2e-34
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
A G ++IV AGV ++ G +R L + N I K + I K P+ + ++SNPV+
Sbjct: 70 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVN 129
Query: 80 ILTYVS----WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDS 134
++ K + R++G LD +R +A+ LGL P V ++G H G +
Sbjct: 130 STVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 188
Query: 135 SVPVWSGVNVAG 146
+P+ S V
Sbjct: 189 ILPLLSQVKPPS 200
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 122 bits (308), Expect = 5e-34
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
EG+ +V+++AGV ++ G R L N I K ++ + K P+ + I++NPV+
Sbjct: 63 ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVN 122
Query: 80 ILTYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSS 135
++ K + KN++ G T LD +R +A+ G P V +IG H +
Sbjct: 123 TTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVT 181
Query: 136 -VPVWSGVNVAGVNLRE 151
+P+ S V GV+ E
Sbjct: 182 ILPLLS--QVPGVSFTE 196
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 120 bits (304), Expect = 2e-33
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+G +V++ AGV ++ G +R L N I + ++ P + I+SNPV+
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 80 ILTYVSW----KLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEH-GDS 134
++ K + N++ G T LD +R +A+ GL P V +IG H G +
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAGKT 180
Query: 135 SVPVWSGVNVAG 146
+P+ S
Sbjct: 181 IIPLISQCTPKV 192
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 112 bits (282), Expect = 5e-30
Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 22/191 (11%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
T + +FK + ++ ++ G R L++ N IF
Sbjct: 69 EATDDPKVAFKDADY--------------ALLVGAAPRKAGMERRDLLQVNGKIFTEQGR 114
Query: 61 NIVKYSPQ-CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
+ + + + +L+V NP + +++K + R + T LD R + LA+K G
Sbjct: 115 ALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTG 174
Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
+ + + G H + P V G E+ + E + F + T V
Sbjct: 175 VDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALEL---VDMEWYEKVF--IPT-VAQRGAA 228
Query: 179 IIRLKGYTSWA 189
II+ +G +S A
Sbjct: 229 IIQARGASSAA 239
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 111 bits (279), Expect = 1e-29
Identities = 35/191 (18%), Positives = 64/191 (33%), Gaps = 21/191 (10%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
+ ++FK +V ++ + G R L+E N IF
Sbjct: 72 TAHADPMTAFKDADV--------------ALLVGARPRGPGMERKDLLEANAQIFTVQGK 117
Query: 61 NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
I S +L+V NP + Y++ K + + + LD R +A K G
Sbjct: 118 AIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177
Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
S+ + G H + + + G +++++ D V
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAA 232
Query: 179 IIRLKGYTSWA 189
II +G +S A
Sbjct: 233 IIDARGVSSAA 243
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 109 bits (274), Expect = 7e-29
Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 20/198 (10%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
+ T + +FK ++V I+ + +R+G R L++ NV IFK
Sbjct: 68 IATDKEEIAFKDLDV--------------AILVGSMPRRDGMERKDLLKANVKIFKCQGA 113
Query: 61 NIVKYSPQ-CTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
+ KY+ + +++V NP + + K + T LD R + +A KLG++
Sbjct: 114 ALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVT 173
Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
+ V II G H + P + V + D+ G+ T V
Sbjct: 174 SDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD-DSWLKGEFITTVQQRGAA 232
Query: 179 IIRLKGYTSWAIGLSIAS 196
+I+ + +S S A
Sbjct: 233 VIKARKLSSAM---SAAK 247
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 109 bits (273), Expect = 1e-28
Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 21/191 (10%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
+ + + F+ V+ ++ + G R +L++ N IF
Sbjct: 97 SIGIDPYEVFEDVDW--------------ALLIGAKPRGPGMERAALLDINGQIFADQGK 142
Query: 61 NIVKY-SPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLS 119
+ S +L+V NP + + K + + + T LD R + LA K G+
Sbjct: 143 ALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVF 202
Query: 120 PESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYE 178
+ V I G H + VP + + G ++EV I EE + V
Sbjct: 203 YDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEV---IKRTKWLEE--EFTITVQKRGGA 257
Query: 179 IIRLKGYTSWA 189
+I+ G +S A
Sbjct: 258 LIQKWGRSSAA 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 3e-07
Identities = 40/234 (17%), Positives = 74/234 (31%), Gaps = 67/234 (28%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
+LTT ++ T + +L S + E SL+ + ++ +P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSM------TLTPDEV---KSLLLKYLDCRPQDLP 319
Query: 61 N-IVKYSPQCTLLI---VSNPVDILTYVSWKLSGFPK-NRVIGSG-TNLDSMRFRVLLAQ 114
++ +P+ +I + + + WK K +I S L+ +R +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMF-D 376
Query: 115 KLGLSPESVYGFIIGEHGDSSVP------VWSGVNVAGV----------NLREVNPAIGT 158
+L + P S + +P +W V + V +L E P T
Sbjct: 377 RLSVFPPSAH-----------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 159 ----------EGDTEEFGKLHTDVVNSAYEIIR-----------LKGYTSWAIG 191
+ E LH +V+ Y I + L Y IG
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIG 478
Score = 36.8 bits (84), Expect = 0.005
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
+DHSS N+ R++ +E R++ + + E+ L LV NV
Sbjct: 217 SDHSS----NIKLRIHSIQAELRRLL------KSKPYENCL-LVLLNVQN-----AKAWN 260
Query: 65 -YSPQCTLLIVSNPVDILTYVS-WKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPES 122
++ C +L+ + + ++S + + + T + LL + L P+
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS---LLLKYLDCRPQD 317
Score = 29.1 bits (64), Expect = 1.4
Identities = 26/161 (16%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 71 LLIVSNPVDILTYVSWKLSGFPKNRV---IGSGTNLDSMRFRVLLA--QKLGLSPESVYG 125
+++ + V + W L + V + ++ ++ L++ + P +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTR 110
Query: 126 FIIGEHGD--SSVPVWSGVNVAGV--------NLREVNPAI-----GTEGDTEEFGK--L 168
I + + V++ NV+ + L E+ PA G G GK +
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SGKTWV 166
Query: 169 HTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
DV S ++ W + L + T+L K+
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLL 206
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 44.1 bits (103), Expect = 2e-05
Identities = 32/181 (17%), Positives = 55/181 (30%), Gaps = 19/181 (10%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLV--------ERNVNIFKGIIPNIVKYSPQCTL 71
+ E R + G + ++V + F I I K SP+
Sbjct: 89 GHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 148
Query: 72 LIVSNPVDILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-E 130
L +NP+ T ++ + +G + + +KLGL E V + G
Sbjct: 149 LQAANPIFEGT---TLVTRTVPIKAVGFCHGHYGVME---IVEKLGLEEEKVDWQVAGVN 202
Query: 131 HGDSSVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAI 190
HG + G N + E + + + S I + Y I
Sbjct: 203 HGI----WLNRFRYNGGNAYPLLDKWIEEKSKDWKPENPFNDQLSPAAIDMYRFYGVMPI 258
Query: 191 G 191
G
Sbjct: 259 G 259
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 42.5 bits (99), Expect = 5e-05
Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 11/134 (8%)
Query: 35 GVRQRE--GESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFP 92
GV +E G L R + + II ++ + P L+ +NP ++T +
Sbjct: 110 GVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY--TK 167
Query: 93 KNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIG-EHGDSSVPVWSGVNVAGVNLRE 151
+ +V+G MR +A+ LG+ + V+ G H V + GV + E
Sbjct: 168 QEKVVGLCNVPIGMRMG--VAKLLGVDADRVHIDFAGLNHMV----FGLHVYLDGVEVTE 221
Query: 152 VNPAIGTEGDTEEF 165
+ D
Sbjct: 222 KVIDLVAHPDRSGV 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 6e-05
Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 26/82 (31%)
Query: 58 IIPNIVKYSPQCTLLIVSNPVDILTYVSW-KLSGFPKNRVI--GSGT----------NLD 104
I IV I+ PV W + F ++ G G N D
Sbjct: 475 ISERIVD-------CIIRLPVK------WETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 105 SMRFRVLLAQKLGLSPESVYGF 126
RV++A L ++P+ YGF
Sbjct: 522 GTGVRVIVAGTLDINPDDDYGF 543
Score = 38.5 bits (89), Expect = 0.001
Identities = 32/157 (20%), Positives = 54/157 (34%), Gaps = 50/157 (31%)
Query: 16 LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
+ + N L G ++ I SLV N + L+VS
Sbjct: 353 VNKTNSHLPAGKQVEI--------------SLV--N--------------GAKN--LVVS 380
Query: 76 NPVDILTYVSWKL------SGFPKNRVIGSGTNLD-SMRF-RV-------LLAQKLGLSP 120
P L ++ L SG ++R+ S L S RF V LL L
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 121 ESVYGFIIGEHGDS-SVPVWSGVNVAGVNLREVNPAI 156
+ + + + +PV+ + G +LR ++ +I
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFD--GSDLRVLSGSI 475
Score = 32.7 bits (74), Expect = 0.093
Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 38/118 (32%)
Query: 77 PVDILTY--VSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDS 134
D L +S L G L + V A+ LG +P + ++ G G S
Sbjct: 227 DKDYLLSIPISCPLIGV---------IQL--AHYVVT-AKLLGFTPGELRSYLKGATGHS 274
Query: 135 SVPVWSGVNVAGVNLREVNPAIGTEGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGL 192
G+ V V AI E F V A ++ + IG+
Sbjct: 275 -----QGL-VTAV-------AIAETDSWESF----FVSVRKAITVL------FF-IGV 308
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 27.2 bits (61), Expect = 4.0
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 9/40 (22%)
Query: 109 RVLLAQKLGLSPESVYGFIIG---------EHGDSSVPVW 139
R ++ + + L F + EHG + V
Sbjct: 157 RAVITRWVQLPLAEGSRFAMPTASIGICGFEHGVRQLAVL 196
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,215,002
Number of extensions: 193489
Number of successful extensions: 697
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 50
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)