RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17689
(216 letters)
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 93.5 bits (232), Expect = 4e-25
Identities = 37/81 (45%), Positives = 58/81 (71%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+ + + +V++TAG RQ+ G+SRL LV VNI K I+PN+VK +P ++++NPVD
Sbjct: 63 DPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 122
Query: 80 ILTYVSWKLSGFPKNRVIGSG 100
I T+V+ KL+G P+N++ GSG
Sbjct: 123 IATHVAQKLTGLPENQIFGSG 143
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 93.6 bits (232), Expect = 6e-25
Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 1 VLTTNDHSSFKGVNV-LTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGII 59
+ N F V + +Y + +V++ AG Q+ GE+RL LV++N+ IF+ I+
Sbjct: 48 AMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIV 107
Query: 60 PNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
+++ Q L+ +NPVDILTY +WK SG P RVIGSG
Sbjct: 108 ESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSG 148
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 92.8 bits (230), Expect = 9e-25
Identities = 41/100 (41%), Positives = 60/100 (60%)
Query: 1 VLTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIP 60
+ N F G L +Y+ + +++VTAG ++ GE+RL L ++NV I K +
Sbjct: 43 AMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQ 102
Query: 61 NIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
NI+KY +L+VSNPVDI+TY+ K SG P +VIGSG
Sbjct: 103 NIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSG 142
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 93.0 bits (230), Expect = 2e-24
Identities = 61/113 (53%), Positives = 86/113 (76%)
Query: 99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
SG NLDS RFR L+ +KLG++P S +G+++GEHGDSSVP+WSGVNVAGV L+ +NPAIGT
Sbjct: 1 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGT 60
Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAI 211
+ + + + +H VV YE++ +KGYTSWAIGLS+ L ++L N ++H +
Sbjct: 61 DKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPV 113
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 91.8 bits (227), Expect = 4e-24
Identities = 69/111 (62%), Positives = 92/111 (82%)
Query: 99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
SG NLDS RFR L+A+KLG+ P S +G+I+GEHGDSSV VWSGVNVAGV+L+E+NP +GT
Sbjct: 1 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGT 60
Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
+ D+E + ++H VV SAYE+I+LKGYT+WAIGLS+A L ++L N ++IH
Sbjct: 61 DNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIH 111
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 90.9 bits (225), Expect = 5e-24
Identities = 43/99 (43%), Positives = 59/99 (59%)
Query: 2 LTTNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPN 61
L D +F + Y+ + + +V++TAG Q+ GESRL LV +N+NI I+
Sbjct: 48 LDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKP 107
Query: 62 IVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGSG 100
+V L+ +NPVDILTY +WK SGFPK RVIGSG
Sbjct: 108 VVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSG 146
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 89.3 bits (221), Expect = 3e-23
Identities = 43/79 (54%), Positives = 61/79 (77%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y +S S++VI+TAG R G++RL L++RNV I K I+P +++ SP C +++V+NPVD
Sbjct: 81 DYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVD 140
Query: 80 ILTYVSWKLSGFPKNRVIG 98
ILTYV WK+SGFP RVIG
Sbjct: 141 ILTYVVWKISGFPVGRVIG 159
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 140
Score = 88.2 bits (218), Expect = 5e-23
Identities = 39/92 (42%), Positives = 56/92 (60%)
Query: 8 SSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSP 67
+ F + +YA +GS +VIV AGV Q+ GE+RL L+ RN + K I N+ KY+P
Sbjct: 49 TPFTRRANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAP 108
Query: 68 QCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99
+++V+NPVD+LTY K SG +V GS
Sbjct: 109 DSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 142
Score = 88.2 bits (218), Expect = 5e-23
Identities = 36/79 (45%), Positives = 55/79 (69%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+YA + S IVI+TAG+ ++ G +R L+ +N I K + NI+K+S +++VSNP+D
Sbjct: 63 DYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIG 98
I+T+V+W SG PK RVIG
Sbjct: 123 IMTHVAWVRSGLPKERVIG 141
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase
{Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Length = 170
Score = 88.7 bits (219), Expect = 6e-23
Identities = 44/110 (40%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
TNLDS R R L+AQ+ G++ ++V+ +I GEHGDS VP+W + GV + + P G +
Sbjct: 1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60
Query: 161 DTE-EFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
+ ++H +V N+AY+II KG T++AIG+S + +L++TN+I
Sbjct: 61 LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRIL 110
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 88.6 bits (219), Expect = 7e-23
Identities = 57/89 (64%), Positives = 75/89 (84%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQC 69
+ ++ +Y+++ S+IV+VTAGVRQ+EGESRL+LV+RNVN+FK IIP IVKYSP C
Sbjct: 72 LQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131
Query: 70 TLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
+++VSNPVDILTYV+WKLSG PK+RVIG
Sbjct: 132 IIIVVSNPVDILTYVTWKLSGLPKHRVIG 160
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 169
Score = 88.7 bits (219), Expect = 7e-23
Identities = 49/116 (42%), Positives = 72/116 (62%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T LDS+RFR LL++KLG+ ++V+G+IIGEHGDS +P+WS ++AG N+ E
Sbjct: 1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60
Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
E+ K+ DV + II+ KG T + I +SI ++ TLL N N I + T+I
Sbjct: 61 TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVIN 116
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 87.3 bits (216), Expect = 1e-22
Identities = 24/94 (25%), Positives = 49/94 (52%)
Query: 5 NDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVK 64
N ++ + + Y + GS +V++TAG+ ++ G++R+ L N I + I ++ +
Sbjct: 49 NHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDE 108
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
++ L SNPVD+L ++ + +VIG
Sbjct: 109 HNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIG 142
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 142
Score = 85.1 bits (210), Expect = 8e-22
Identities = 35/79 (44%), Positives = 56/79 (70%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
+Y+L +GS I++VTAG+ ++ G +RL L +N I K I IV+ +P+ +L+V+NP+D
Sbjct: 63 DYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122
Query: 80 ILTYVSWKLSGFPKNRVIG 98
++TY+ WK SG P+N V G
Sbjct: 123 VMTYIMWKESGKPRNEVFG 141
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 84.4 bits (208), Expect = 1e-21
Identities = 20/96 (20%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 8 SSFKGVNVLTRLNYALSEGSRIVIVTAGV----RQREGESRLSLVERNVNIFKGIIPNIV 63
++ + + ++A + +VI T G + R + ++ ++ + + N+
Sbjct: 51 ANLEAHGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLK 110
Query: 64 KYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIGS 99
+ L+++SNPVD++T + ++GFP ++VIG+
Sbjct: 111 ESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGT 146
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 84.8 bits (209), Expect = 2e-21
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 25 EGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
G+ +VIVTAG + G+S R L+ N I I +I K P +++V+NPVD
Sbjct: 70 AGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD 129
Query: 80 ILTYVSWKLSGFPKNRVIGSG 100
++ + + SG PKN++IG G
Sbjct: 130 VMVQLLHQHSGVPKNKIIGLG 150
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 84.0 bits (207), Expect = 3e-21
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 21 YALSEGSRIVIVTAGVRQREGES-----RLSLVERNVNIFKGIIPNIVKYSPQCTLLIVS 75
A G+ VIVTAG+ + G+ R L+ N I + I NI KY P+ +++V+
Sbjct: 71 EAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130
Query: 76 NPVDILTYVSWKLSGFPKNRVIG 98
NP+D + V + SG P N + G
Sbjct: 131 NPLDCMVKVMCEASGVPTNMICG 153
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga
maritima [TaxId: 2336]}
Length = 172
Score = 84.1 bits (207), Expect = 4e-21
Identities = 43/117 (36%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
GT LD+ R R L+AQ G SP SV+ ++IGEHGDS VPVWSG + G+ L+ + + +
Sbjct: 1 GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQ-VCQK 59
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
D++ +AYEII KG T +AI L++A + ++ + ++ +S ++
Sbjct: 60 CDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLE 116
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 83.7 bits (206), Expect = 4e-21
Identities = 60/111 (54%), Positives = 82/111 (73%), Gaps = 3/111 (2%)
Query: 99 SGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGT 158
SG NLDS RFR L+ ++LG+ S +G++IGEHGDS VWSG+NVA + L ++ GT
Sbjct: 1 SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLD---GT 57
Query: 159 EGDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
D +++ KLH DVV+SAYE+I+LKGYTSWAIGLS+A L T++ N ++H
Sbjct: 58 NKDKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVH 108
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 152
Score = 82.3 bits (203), Expect = 1e-20
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
G LDS R + L + +IIGEHGDS S + G E
Sbjct: 1 GNQLDSQRLKERLYNAGARNIRR--AWIIGEHGDSMFVAKSLADFDGEVDWEAV------ 52
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
DV A E+I+ KG T + ++I + ++ +T +I S ++Q
Sbjct: 53 ---------ENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQ 100
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 81.6 bits (201), Expect = 2e-20
Identities = 31/79 (39%), Positives = 52/79 (65%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
NYA + S +++VT+G ++ G SR L++ N +I + I SP +++V+NP+D
Sbjct: 63 NYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD 122
Query: 80 ILTYVSWKLSGFPKNRVIG 98
+TY++ ++SGFPK RVIG
Sbjct: 123 AMTYLAAEVSGFPKERVIG 141
>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 171
Score = 82.2 bits (202), Expect = 2e-20
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T+LDS R RV L ++ + P SV +I+GEHGDS +S + +R+V G
Sbjct: 1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGV-- 58
Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
++ KL V N AY+II LKG T + IG ++ ++ +L + N + +
Sbjct: 59 SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGA 111
>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate
dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId:
1583]}
Length = 163
Score = 81.8 bits (201), Expect = 3e-20
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
GT LD+ R + + + L P SV G+ +GEHG+S WS V V G + + +
Sbjct: 1 GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTL-----AD 55
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTL 214
+ + + + ++ KGYTS+ + S + ++ + + +S
Sbjct: 56 AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNR 110
>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
gondii [TaxId: 5811]}
Length = 174
Score = 81.1 bits (199), Expect = 6e-20
Identities = 30/113 (26%), Positives = 46/113 (40%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
LDS RFR +A L +SP V +IG HGD VP+ + V G +++
Sbjct: 1 ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT 60
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIS 212
E HT V +G +A S ++ + LN+ ++ S
Sbjct: 61 EKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCS 113
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 145
Score = 80.2 bits (197), Expect = 6e-20
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
N + + S +VI+T+GV ++EG SR+ L + N I I + + +++NPVD
Sbjct: 68 NLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVITNPVD 126
Query: 80 ILTYVSWKLSGFPKNRVIG 98
++TY + S F +N+V G
Sbjct: 127 VMTYKALVDSKFERNQVFG 145
>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
casei [TaxId: 1582]}
Length = 172
Score = 80.3 bits (197), Expect = 1e-19
Identities = 42/116 (36%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T+LD+ RFR +A+ + + SV+ +I+GEHGD+ PVWS N+ GV + E A
Sbjct: 1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEI- 59
Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
++ K+ DV ++AYEII+LKG T + I ++A ++ +LN+ N + +S +
Sbjct: 60 KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMD 115
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 169
Score = 79.8 bits (196), Expect = 2e-19
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 11/115 (9%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T LD +R +A+ GL P V +IG H ++ V+
Sbjct: 2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDF----------- 50
Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLI 215
++ L + + E+++ K A + + + + ++ ++
Sbjct: 51 PQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVV 105
>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium
vibrioforme [TaxId: 1098]}
Length = 163
Score = 79.4 bits (195), Expect = 2e-19
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
LD+ RFR +A +LG+S + + ++G HGD+ VPV VAG+ + ++ PA
Sbjct: 4 LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPA------- 56
Query: 163 EEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
E KL N EI+ +G +A S+ + +++ + ++ +
Sbjct: 57 ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAV 109
>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 164
Score = 78.6 bits (193), Expect = 5e-19
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
LD+ R+R +A + G+S + V ++G HGD VP+ ++G+ + E
Sbjct: 4 LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFI-------AP 56
Query: 163 EEFGKLHTDVVNSAYEIIRL--KGYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
+ ++ EI+ L G +A + A + +L + ++ ++
Sbjct: 57 DRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAA 109
>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum
vulgare), chloroplast [TaxId: 4558]}
Length = 175
Score = 78.1 bits (192), Expect = 7e-19
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 2/97 (2%)
Query: 4 TNDHSSFKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIV 63
+ + Y + E ++ + G R +L++ N IF +
Sbjct: 78 EDSLYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALN 137
Query: 64 KYSPQ-CTLLIVSNPVDILTYVSWK-LSGFPKNRVIG 98
+ + +L+V NP + + K P
Sbjct: 138 AVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHA 174
>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 165
Score = 78.0 bits (191), Expect = 7e-19
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGDT 162
LD+ R + ++QKL + P V I+G HG+ V + + V G+ L+E
Sbjct: 3 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFIN--NKLISD 60
Query: 163 EEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
E + VN+A EI+ L A +I + + L + K+ STL++
Sbjct: 61 AELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLE 114
>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 154
Score = 75.9 bits (186), Expect = 3e-18
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ-CTLLIVSNPV 78
+ + ++ ++ G R L++ N IF + + + + +L+V NP
Sbjct: 74 PKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 133
Query: 79 DILTYVSWKL-SGFPKNRVI 97
+ +++K G
Sbjct: 134 NTNALIAYKNAPGLNPRNFT 153
>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 179
Score = 76.7 bits (188), Expect = 3e-18
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 3/118 (2%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
T LD R + +A KLG++ + V II G H + P + V +
Sbjct: 1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYE-AVK 59
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSW-AIGLSIASLTYTLLNNTNKIHAISTLIQ 216
D+ G+ T V +I+ + +S + +I + T + +S I
Sbjct: 60 DDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGII 117
>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 154
Score = 75.9 bits (186), Expect = 4e-18
Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 10 FKGVNVLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQ- 68
+ T + + I+ + +R+G R L++ NV IFK + KY+ +
Sbjct: 63 LLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKS 122
Query: 69 CTLLIVSNPVDILTYVSWKLS-GFPKNRVIG 98
+++V NP + + K + PK
Sbjct: 123 VKVIVVGNPANTNCLTASKSAPSIPKENFSC 153
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
(Sorghum vulgare), chloroplast [TaxId: 4558]}
Length = 188
Score = 76.2 bits (187), Expect = 6e-18
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
T LD R + LA K G+ + V I G H + VP + + G ++EV T+
Sbjct: 1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIK--RTK 58
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWA-IGLSIASLTYTLLNNTNKIHAISTLIQ 216
EEF V +I+ G +S A +SIA +L+ T + ST +
Sbjct: 59 WLEEEF---TITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVY 113
>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 161
Score = 75.3 bits (184), Expect = 8e-18
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 9/110 (8%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
G LDS RFR +L+++ ++V G I+GEHGD+ VPV+S V+V G +
Sbjct: 2 GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEF-------- 53
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
+E +L D+ SA ++I KG T W +A + +L++T ++
Sbjct: 54 -SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVL 102
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 73.1 bits (179), Expect = 3e-17
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 20 NYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVD 79
EG+ +V+++AGVR++ G R L N I K ++ + K P+ + I++NPV+
Sbjct: 63 ATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVN 122
Query: 80 ILTYVSW----KLSGFPKNRVIG 98
++ K + KN++ G
Sbjct: 123 TTVAIAAEVLKKAGVYDKNKLFG 145
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 71.2 bits (174), Expect = 2e-16
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 21 YALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGIIPNIVKYSPQCTLLIVSNPVDI 80
+G +V++ AGV ++ G +R L N I + ++ P + I+SNPV+
Sbjct: 63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS 122
Query: 81 LTYVSW----KLSGFPKNRVIG 98
++ K + N++ G
Sbjct: 123 TIPITAEVFKKHGVYNPNKIFG 144
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 71.8 bits (175), Expect = 2e-16
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 5/117 (4%)
Query: 100 GTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
GT+LDS+RF+V +A+ G+ + V IIGEHGDS VP+ S ++ G+ +++
Sbjct: 2 GTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKELP 61
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
D DV +IIRLKG + + +I ++ ++NN ++ +S +
Sbjct: 62 IDEI-----IEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVD 113
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 71.4 bits (174), Expect = 3e-16
Identities = 39/109 (35%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T LD+ RFR LL + ++P++V+ +IIGEHGD+ +PVWS + + +R++ + G E
Sbjct: 1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEE- 59
Query: 161 DTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIH 209
++ ++ +V ++AY+II KG T + I + +A +T +L+N N I
Sbjct: 60 AQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAIL 108
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga
maritima [TaxId: 2336]}
Length = 162
Score = 70.5 bits (172), Expect = 4e-16
Identities = 10/103 (9%), Positives = 26/103 (25%), Gaps = 21/103 (20%)
Query: 15 VLTRLNYALSEGSRIVIVTAGVRQREGESRLSLVERNVNIFKGI---------------- 58
+++ ++ VI +G + +
Sbjct: 60 LISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119
Query: 59 ---IPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
+ V+ + T++ +NP +T + IG
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSGHITEFVRNY--LEYEKFIG 160
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 70.5 bits (172), Expect = 6e-16
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGDSSVPVWSGVNVAGVNLREVNPAIGTEG 160
T LD +R +A+ G P V +IG H ++ ++ G
Sbjct: 2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPL------------LSQVPGVSF 49
Query: 161 DTEEFGKLHTDVVNSAYEIIRLK---GYTSWAIGLSIASLTYTLLNNTNKIHAIST 213
+E L + N+ E++ K G + ++G + A +L+ +
Sbjct: 50 TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVE 105
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 169
Score = 67.8 bits (165), Expect = 6e-15
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 22/94 (23%)
Query: 25 EGSRIVIVTAGVRQRE--------------------GESRLSLVERNVNIFKGIIPNIVK 64
+G+ V V E G L R + + II ++ +
Sbjct: 76 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEE 135
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
P L+ +NP ++T + + +V+G
Sbjct: 136 LCPDAWLINFTNPAGMVTEAVLRY--TKQEKVVG 167
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga
maritima [TaxId: 2336]}
Length = 171
Score = 67.1 bits (163), Expect = 1e-14
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 3 TTNDHSSFKGVNVLTR----LNYALSEGSRIVIVTAGVRQREGESRLSLVE--------R 50
T N + + + E R + G + ++V
Sbjct: 67 TMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYN 126
Query: 51 NVNIFKGIIPNIVKYSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVIG 98
+ F I I K SP+ L +NP+ T + + + +G
Sbjct: 127 QLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPI---KAVG 171
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 173
Score = 66.3 bits (161), Expect = 2e-14
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 101 TNLDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTE 159
T LD R + LA+K G + + + G H + P V G E+
Sbjct: 2 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM---- 57
Query: 160 GDTEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAIS 212
+ E + T A I ++ + + T + +S
Sbjct: 58 -EWYEKVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVS 109
>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
arcticum [TaxId: 87645]}
Length = 171
Score = 63.7 bits (154), Expect = 2e-13
Identities = 18/115 (15%), Positives = 34/115 (29%), Gaps = 4/115 (3%)
Query: 103 LDSMRFRVLLAQKLGLSPESVYGFII-GEHGDSSVPVWSGVNVAGVNLREVNPAIGTEGD 161
LD R +A K G S+ + G H + + + G +++++ D
Sbjct: 3 LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62
Query: 162 TEEFGKLHTDVVNSAYEIIRLKGYTSWAIGLSIASLTYTLLNNTNKIHAISTLIQ 216
T A R + A +I + +L K +
Sbjct: 63 TFLPTVGKRGA---AIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSD 114
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 167
Score = 62.7 bits (152), Expect = 3e-13
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 22/93 (23%)
Query: 25 EGSRIVIVTAGVRQREGESRLSLVERN--------------------VNIFKGIIPNIVK 64
V+ V + + + + I+ + K
Sbjct: 76 TDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEK 135
Query: 65 YSPQCTLLIVSNPVDILTYVSWKLSGFPKNRVI 97
YSP +L SNP I+ + +L P ++++
Sbjct: 136 YSPDAWMLNYSNPAAIVAEATRRL--RPNSKIL 166
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 207
Score = 24.8 bits (54), Expect = 7.5
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 79 DILTYVSWKLSGFPKNRVIGSGTNLDSMRFRVLLAQKLGLSPESVYGFIIGEHGD 133
+IL + + F N V ++ FR+L +S + F + D
Sbjct: 65 EILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGID 119
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.387
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 762,385
Number of extensions: 34423
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 49
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)