BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1769
(1662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 182 bits (463), Expect = 1e-45, Method: Composition-based stats.
Identities = 99/263 (37%), Positives = 156/263 (59%), Gaps = 22/263 (8%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+DMTS++ + D YA H+ KD+ + +S+ +N HLFK DK+VL+
Sbjct: 27 EDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFK----------DKVVLD 76
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VG G G+L +F A+AGA+ VI ++CS I+ ++V+ N V+T+I ++E+++ LP
Sbjct: 77 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LP- 134
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAAT- 1551
+E VDII+S WMG+ L+ S++N V++ARD++L P GLI PDRA LY A D
Sbjct: 135 -VEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY 193
Query: 1552 KYSFWHDVYGFDMEPIQRDLPNIAKFHP----VPGDKVMTDSILIHSIDLNTCSVDDTSF 1607
K +W +VYGFDM I+ ++A P V +++T++ LI +D+ T V+D +F
Sbjct: 194 KIHWWENVYGFDMSCIK----DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTF 249
Query: 1608 NLEFAMVAKEGGFVNAFVLYFKV 1630
F + K +V+A V YF +
Sbjct: 250 TSPFCLQVKRNDYVHALVAYFNI 272
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 182 bits (462), Expect = 1e-45, Method: Composition-based stats.
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 22/263 (8%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+DMTS++ + D YA H+ KD+ + +S+ +N HLFK DK+VL+
Sbjct: 17 EDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFK----------DKVVLD 66
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VG G G+L +F A+AGA+ VI ++CS I+ ++V+ N V+T+I ++E+++ LP
Sbjct: 67 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LP- 124
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAAT- 1551
+E VDII+S WMG+ L+ +S++N V++ARD++L P GLI PDRA LY A D
Sbjct: 125 -VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY 183
Query: 1552 KYSFWHDVYGFDMEPIQRDLPNIAKFHP----VPGDKVMTDSILIHSIDLNTCSVDDTSF 1607
K +W +VYGFDM I+ ++A P V +++T++ LI +D+ T V+D +F
Sbjct: 184 KIHWWENVYGFDMSCIK----DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTF 239
Query: 1608 NLEFAMVAKEGGFVNAFVLYFKV 1630
F + K +V+A V YF +
Sbjct: 240 TSPFCLQVKRNDYVHALVAYFNI 262
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 182 bits (462), Expect = 1e-45, Method: Composition-based stats.
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 22/263 (8%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+DMTS++ + D YA H+ KD+ + +S+ +N HLFK DK+VL+
Sbjct: 14 EDMTSKDYYFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFK----------DKVVLD 63
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VG G G+L +F A+AGA+ VI ++CS I+ ++V+ N V+T+I ++E+++ LP
Sbjct: 64 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LP- 121
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAAT- 1551
+E VDII+S WMG+ L+ +S++N V++ARD++L P GLI PDRA LY A D
Sbjct: 122 -VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY 180
Query: 1552 KYSFWHDVYGFDMEPIQRDLPNIAKFHP----VPGDKVMTDSILIHSIDLNTCSVDDTSF 1607
K +W +VYGFDM I+ ++A P V +++T++ LI +D+ T V+D +F
Sbjct: 181 KIHWWENVYGFDMSCIK----DVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTF 236
Query: 1608 NLEFAMVAKEGGFVNAFVLYFKV 1630
F + K +V+A V YF +
Sbjct: 237 TSPFCLQVKRNDYVHALVAYFNI 259
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine Methyltransferase
1 (Prmt1) M48l Mutant
Length = 349
Score = 180 bits (456), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 14/259 (5%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+DMTS++ + D YA H+ KD+ + +S+ +N HLFK DK+VL+
Sbjct: 23 EDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFK----------DKVVLD 72
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VG G G+L +F A+AGA+ VI ++CS I+ ++V+ N V+T+I ++E+++ LP
Sbjct: 73 VGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-LP- 130
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAA-T 1551
+E VDII+S WMG+ L+ +S++N V++ARD++L P GLI PDRA LY A D
Sbjct: 131 -VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDY 189
Query: 1552 KYSFWHDVYGFDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEF 1611
K +W +VYGFDM I+ V +++T++ LI +D+ T V+D +F F
Sbjct: 190 KIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPF 249
Query: 1612 AMVAKEGGFVNAFVLYFKV 1630
+ K +V+A V YF +
Sbjct: 250 CLQVKRNDYVHALVAYFNI 268
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase, Hmt1
Length = 328
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/251 (37%), Positives = 136/251 (54%), Gaps = 14/251 (5%)
Query: 1383 DVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSL 1442
D Y H+ +D + ++II N LFK DKIVL+VGCG G+LS+
Sbjct: 5 DSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFK----------DKIVLDVGCGTGILSM 54
Query: 1443 FCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502
F A+ GAKHVI VD S I ++ +E+VE N SD IT++ ++ED+ LP VDII+S
Sbjct: 55 FAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV-HLP--FPKVDIIIS 111
Query: 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAA-TKYSFWHDVYG 1561
WMG+ L +S+++ V+YARD +L GLI PD+ ++ D+ K ++W DVYG
Sbjct: 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171
Query: 1562 FDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFV 1621
FD P + + V + V T S + DLNT + D +F F + AK +
Sbjct: 172 FDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMI 231
Query: 1622 NAFVLYFKVIL 1632
N V +F ++
Sbjct: 232 NGIVTWFDIVF 242
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein Arginine
Methyltransferase Prmt3
Length = 321
Score = 148 bits (374), Expect = 2e-35, Method: Composition-based stats.
Identities = 84/252 (33%), Positives = 137/252 (54%), Gaps = 14/252 (5%)
Query: 1380 IFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGL 1439
++ Y H+ KDK + D I N H+FK DK+VL+VGCG G+
Sbjct: 9 VYFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFK----------DKVVLDVGCGTGI 58
Query: 1440 LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499
LS+F A+AGAK VI+VD S I +++ N D I +I ++E++ LP +E VD+
Sbjct: 59 LSMFAAKAGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVS-LP--VEKVDV 115
Query: 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAND-TMAATKYSFWHD 1558
I+S WMG+ L +S++++V+YA+ ++L G + PD + VA +D + A + +FW D
Sbjct: 116 IISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDD 175
Query: 1559 VYGFDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEG 1618
VYGF+M +++ + A V +++D I ID +T S+ D F+ +F + +
Sbjct: 176 VYGFNMSCMKKAVIPEAVVEVVDHKTLISDPCDIKHIDCHTTSISDLEFSSDFTLRTTKT 235
Query: 1619 GFVNAFVLYFKV 1630
A YF +
Sbjct: 236 AMCTAVAGYFDI 247
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 143 bits (361), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 133/247 (53%), Gaps = 14/247 (5%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y H+ KDK + D I N H+FK DK+VL+VGCG G+LS+F
Sbjct: 33 YGHYGIHEEMLKDKIRTESYRDFIYQNPHIFK----------DKVVLDVGCGTGILSMFA 82
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGAK V+ VD S I +++ N D IT+I ++E++ LP +E VD+I+S W
Sbjct: 83 AKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV-HLP--VEKVDVIISEW 139
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT-MAATKYSFWHDVYGFD 1563
MG+ L +S++++V+YA++++L G + PD + VA +D A + +FW DVYGF
Sbjct: 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFK 199
Query: 1564 MEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNA 1623
M +++ + A + ++++ I ID +T S+ D F+ +F + A
Sbjct: 200 MSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTA 259
Query: 1624 FVLYFKV 1630
YF +
Sbjct: 260 IAGYFDI 266
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 119 bits (299), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 111/199 (55%), Gaps = 20/199 (10%)
Query: 1376 TSRE---IFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
T RE ++ + Y+D+ H+ D+ + I+ N L+ K VL+
Sbjct: 40 TKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAA----------LRGKTVLD 89
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VG G G+LS+FCA+AGA+ V +V+ S I Q +EVV N D + V+ +E ++ LP
Sbjct: 90 VGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVE-LP- 147
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATK 1552
E VD IVS WMG+ L +S++++V++AR ++LK GL+LP AEL+ V +D M +
Sbjct: 148 --EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQMLEWR 205
Query: 1553 YSFWHDV---YGFDMEPIQ 1568
FW V YG DM ++
Sbjct: 206 LGFWSQVKQHYGVDMSCLE 224
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVI 1480
N H + K VL+VG G G+L+++ A+AGA+ V +V+ + + + +V+ N+ ++ VI
Sbjct: 58 NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVI 117
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540
+EDI LP E VD+I+S WMG+ L +S+ ++V+ ARDR+LKP G++ P A ++
Sbjct: 118 EGSVEDIS-LP---EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMW 173
Query: 1541 CVAANDTMAATK-------YSFWHDV-------YGFDM 1564
+A K + WH+ YG DM
Sbjct: 174 LAPIKSNIADRKRNDFDGAMADWHNFSDEIKSYYGVDM 211
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y + Q +D G + +I+ N FK DKIVL+VGCG G+LS F
Sbjct: 10 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLDVGCGSGILSFFA 59
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP E VDII+S
Sbjct: 60 AQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP---EQVDIIISEP 115
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA----ATKYSFWH--D 1558
MG++L+ + ++ + ++A+ ++LKP G + P +++ D TK +FW+
Sbjct: 116 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 174
Query: 1559 VYGFDMEPIQ 1568
+G D+ ++
Sbjct: 175 FHGVDLSALR 184
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y + Q +D G + +I+ N FK DKIVL+VGCG G+LS F
Sbjct: 19 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLDVGCGSGILSFFA 68
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP E VDII+S
Sbjct: 69 AQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP---EQVDIIISEP 124
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA----ATKYSFWH--D 1558
MG++L+ + ++ + ++A+ ++LKP G + P +++ D TK +FW+
Sbjct: 125 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 183
Query: 1559 VYGFDMEPIQ 1568
+G D+ ++
Sbjct: 184 FHGVDLSALR 193
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y + Q +D G + +I+ N FK DKIVL+VGCG G+LS F
Sbjct: 15 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLDVGCGSGILSFFA 64
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP E VDII+S
Sbjct: 65 AQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP---EQVDIIISEP 120
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA----ATKYSFWH--D 1558
MG++L+ + ++ + ++A+ ++LKP G + P +++ D TK +FW+
Sbjct: 121 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 179
Query: 1559 VYGFDMEPIQ 1568
+G D+ ++
Sbjct: 180 FHGVDLSALR 189
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y + Q +D G + +I+ N FK DKIVL+VGCG G+LS F
Sbjct: 127 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLDVGCGSGILSFFA 176
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP E VDII+S
Sbjct: 177 AQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP---EQVDIIISEP 232
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA----ATKYSFWH--D 1558
MG++L+ + ++ + ++A+ ++LKP G + P +++ D TK +FW+
Sbjct: 233 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 291
Query: 1559 VYGFDMEPIQ 1568
+G D+ ++
Sbjct: 292 FHGVDLSALR 301
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y + Q +D G + +I+ N FK DKIVL+VGCG G+LS F
Sbjct: 14 YGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLDVGCGSGILSFFA 63
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP E VDII+S
Sbjct: 64 AQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP---EQVDIIISEP 119
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA----ATKYSFWH--D 1558
MG++L+ + ++ + ++A+ ++LKP G + P +++ D TK +FW+
Sbjct: 120 MGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPS 178
Query: 1559 VYGFDMEPIQ 1568
+G D+ ++
Sbjct: 179 FHGVDLSALR 188
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine Dependent
Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine Dependent
Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDI 1487
K VL++GCG G ++ AE GAK V+ +D L++ ++ E V+C + I
Sbjct: 46 KTVLDLGCGFGWHCIYAAEHGAKKVLGID------LSERMLTEAKRKTTSPVVCYEQKAI 99
Query: 1488 DRLPHGIENVDIIVSNWMGHVL 1509
+ + + ++++S+ H +
Sbjct: 100 EDIAIEPDAYNVVLSSLALHYI 121
>pdb|2P4A|B Chain B, X-Ray Structure Of A Camelid Affinity Matured Single-Domain
Vhh Antibody Fragment In Complex With Rnase A
pdb|2P4A|D Chain D, X-Ray Structure Of A Camelid Affinity Matured Single-Domain
Vhh Antibody Fragment In Complex With Rnase A
Length = 121
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 1506 GHVLYLDSLINAVVYARDR-----FLKPHGLILPDRAELYCVAANDTMAATKYSFW 1556
G LY DS+ +RD+ +L+ L D A YC A D + AT+Y W
Sbjct: 56 GGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAGGDALVATRYGRW 111
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDC--SVITQLTQEVVEENDCSDVITV 1479
+ L D + ++GCG G +LF A+ + +D I + V+ N C+D +
Sbjct: 42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN-CADRVKG 100
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539
I M D LP E +D+I S + + + +N ++LK G I A
Sbjct: 101 ITGSM---DNLPFQNEELDLIWSEGAIYNIGFERGMN----EWSKYLKKGGFIAVSEASW 153
Query: 1540 YCVAANDTMAATKYSFWHDVY 1560
+ A FW D Y
Sbjct: 154 F----TSERPAEIEDFWMDAY 170
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 33.1 bits (74), Expect = 1.4, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDC--SVITQLTQEVVEENDCSDVITV 1479
+ L D + ++GCG G +LF A+ + +D I + V+ N C+D +
Sbjct: 48 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN-CADRVKG 106
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539
I M D LP E +D+I S + + + +N ++LK G I A
Sbjct: 107 ITGSM---DNLPFQNEELDLIWSEGAIYNIGFERGMN----EWSKYLKKGGFIAVSEASW 159
Query: 1540 YCVAANDTMAATKYSFWHDVY 1560
+ A FW D Y
Sbjct: 160 F----TSERPAEIEDFWMDAY 176
>pdb|3GRZ|A Chain A, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
pdb|3GRZ|B Chain B, Crystal Structure Of Ribosomal Protein L11 Methylase From
Lactobacillus Delbrueckii Subsp. Bulgaricus
Length = 205
Score = 32.0 bits (71), Expect = 2.7, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 18/102 (17%)
Query: 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRR 1483
++K V +VG G G+L++ + GAK V++ D I+ + EEN + I I +
Sbjct: 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATD---ISDESMTAAEENAALNGIYDIALQ 114
Query: 1484 ----MEDIDRLPHGIENVDIIVSNWMGHVLY-----LDSLIN 1516
+ D+D D+IV+N + +L LDS +N
Sbjct: 115 KTSLLADVD------GKFDLIVANILAEILLDLIPQLDSHLN 150
>pdb|4E31|A Chain A, X-Ray Structure Of The Y76f Mutant Of Tcab9, A
C-3'-Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.4 bits (67), Expect = 9.4, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQE--------VVEENDCSDVIT 1478
D ++E+GC G++ EAG +H+ S + +E E+ DV
Sbjct: 108 DPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-- 165
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538
RR E G NV I +N + H+ Y+ S++ V D L P G+ + +
Sbjct: 166 ---RRTE-------GPANV-IYAANTLCHIPYVQSVLEGV----DALLAPDGVFVFEDPY 210
Query: 1539 LYCVAANDTMAATKYSFWHDVYGF 1562
L D +A T + +D + F
Sbjct: 211 L-----GDIVAKTSFDQIYDEHFF 229
>pdb|4E2Y|A Chain A, X-Ray Structure Of The E224q Mutant Of Tcab9, A C-3'-
Methyltransferase, In Complex With
S-Adenosyl-L-Homocysteine And Sugar Product
Length = 416
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQE--------VVEENDCSDVIT 1478
D ++E+GC G++ EAG +H+ S + +E E+ DV
Sbjct: 108 DPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDV-- 165
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538
RR E G NV I +N + H+ Y+ S++ V D L P G+ + +
Sbjct: 166 ---RRTE-------GPANV-IYAANTLCHIPYVQSVLEGV----DALLAPDGVFVFEDPY 210
Query: 1539 LYCVAANDTMAATKYSFWHDVYGF 1562
L D +A T + +D + F
Sbjct: 211 L-----GDIVAKTSFDQIYDQHFF 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,689,144
Number of Sequences: 62578
Number of extensions: 1672884
Number of successful extensions: 2567
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2518
Number of HSP's gapped (non-prelim): 35
length of query: 1662
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1550
effective length of database: 7,964,601
effective search space: 12345131550
effective search space used: 12345131550
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)