Query psy1769
Match_columns 1662
No_of_seqs 551 out of 3471
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 20:26:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499|consensus 100.0 7.8E-42 1.7E-46 381.2 22.9 269 1372-1662 16-289 (346)
2 KOG1500|consensus 100.0 1.2E-32 2.5E-37 305.6 17.9 265 1374-1661 135-410 (517)
3 PF05185 PRMT5: PRMT5 arginine 99.9 1.5E-27 3.2E-32 275.8 16.9 249 1389-1661 151-410 (448)
4 KOG1501|consensus 99.7 7.8E-17 1.7E-21 184.8 9.9 238 1390-1636 34-287 (636)
5 PF12847 Methyltransf_18: Meth 99.6 1.1E-14 2.4E-19 134.5 14.4 107 1426-1536 1-111 (112)
6 COG2226 UbiE Methylase involve 99.5 1E-13 2.3E-18 150.9 14.5 119 1401-1536 36-156 (238)
7 KOG0822|consensus 99.5 3.1E-14 6.6E-19 166.7 10.2 237 1390-1644 334-577 (649)
8 PF08241 Methyltransf_11: Meth 99.5 5.1E-13 1.1E-17 117.9 10.9 94 1431-1534 1-95 (95)
9 PF01209 Ubie_methyltran: ubiE 99.4 2.9E-13 6.3E-18 145.9 10.7 104 1426-1536 47-153 (233)
10 PLN02396 hexaprenyldihydroxybe 99.4 6.8E-13 1.5E-17 149.3 13.8 106 1425-1537 130-236 (322)
11 PF13847 Methyltransf_31: Meth 99.4 3.1E-12 6.7E-17 126.4 13.1 106 1426-1537 3-111 (152)
12 PRK11207 tellurite resistance 99.4 2E-12 4.3E-17 134.6 12.3 101 1426-1533 30-131 (197)
13 COG2227 UbiG 2-polyprenyl-3-me 99.4 6.5E-13 1.4E-17 145.1 8.8 108 1425-1542 58-167 (243)
14 PLN02233 ubiquinone biosynthes 99.4 6.1E-12 1.3E-16 136.6 16.0 105 1426-1536 73-182 (261)
15 PLN02244 tocopherol O-methyltr 99.4 1.9E-12 4.2E-17 145.2 12.5 106 1425-1536 117-223 (340)
16 TIGR00477 tehB tellurite resis 99.4 4E-12 8.7E-17 132.2 12.8 100 1426-1533 30-130 (195)
17 TIGR02752 MenG_heptapren 2-hep 99.4 9.7E-12 2.1E-16 129.7 15.0 104 1426-1536 45-151 (231)
18 PRK11036 putative S-adenosyl-L 99.4 4.8E-12 1E-16 135.5 12.9 104 1426-1535 44-148 (255)
19 PF02353 CMAS: Mycolic acid cy 99.3 7.2E-12 1.6E-16 138.2 13.1 107 1421-1536 57-166 (273)
20 PTZ00357 methyltransferase; Pr 99.3 1.2E-11 2.5E-16 148.1 15.5 242 1389-1636 640-963 (1072)
21 PRK15451 tRNA cmo(5)U34 methyl 99.3 8.1E-12 1.7E-16 133.9 12.2 105 1426-1536 56-164 (247)
22 PF13659 Methyltransf_26: Meth 99.3 7.2E-12 1.6E-16 117.0 10.4 108 1427-1535 1-114 (117)
23 PF05175 MTS: Methyltransferas 99.3 2.4E-11 5.2E-16 123.8 13.7 104 1426-1534 31-138 (170)
24 PRK12335 tellurite resistance 99.3 1.9E-11 4.2E-16 133.8 12.6 101 1426-1534 120-221 (287)
25 TIGR00740 methyltransferase, p 99.3 3.1E-11 6.6E-16 127.8 13.2 105 1426-1536 53-161 (239)
26 KOG1270|consensus 99.3 4.3E-12 9.3E-17 140.3 7.1 102 1426-1538 89-197 (282)
27 PF06325 PrmA: Ribosomal prote 99.3 1.1E-11 2.3E-16 138.7 10.3 97 1426-1535 161-258 (295)
28 PF03848 TehB: Tellurite resis 99.3 2.5E-11 5.4E-16 129.1 12.0 101 1426-1534 30-131 (192)
29 PRK15068 tRNA mo(5)U34 methylt 99.3 2.3E-11 4.9E-16 136.5 11.7 105 1425-1536 121-226 (322)
30 PF13649 Methyltransf_25: Meth 99.3 1.9E-11 4.1E-16 113.5 9.2 95 1430-1530 1-101 (101)
31 PRK00107 gidB 16S rRNA methylt 99.3 5.7E-11 1.2E-15 124.9 13.7 98 1426-1535 45-144 (187)
32 TIGR02469 CbiT precorrin-6Y C5 99.2 1.4E-10 3E-15 108.1 14.1 102 1426-1536 19-122 (124)
33 TIGR00138 gidB 16S rRNA methyl 99.2 6.8E-11 1.5E-15 123.0 13.0 98 1426-1535 42-141 (181)
34 COG2230 Cfa Cyclopropane fatty 99.2 5E-11 1.1E-15 133.1 12.7 108 1423-1538 69-178 (283)
35 COG2264 PrmA Ribosomal protein 99.2 2.5E-11 5.5E-16 136.3 10.4 101 1426-1536 162-263 (300)
36 PRK14103 trans-aconitate 2-met 99.2 3.4E-11 7.3E-16 128.8 10.9 95 1426-1535 29-125 (255)
37 PRK10258 biotin biosynthesis p 99.2 3.5E-11 7.7E-16 127.7 10.7 98 1426-1536 42-140 (251)
38 TIGR00406 prmA ribosomal prote 99.2 8.4E-11 1.8E-15 129.4 13.4 99 1426-1535 159-258 (288)
39 PTZ00098 phosphoethanolamine N 99.2 6.3E-11 1.4E-15 128.9 11.9 104 1426-1536 52-156 (263)
40 TIGR00452 methyltransferase, p 99.2 8.3E-11 1.8E-15 132.4 13.2 105 1425-1536 120-225 (314)
41 PRK11873 arsM arsenite S-adeno 99.2 9.1E-11 2E-15 126.2 12.9 105 1425-1536 76-183 (272)
42 smart00828 PKS_MT Methyltransf 99.2 7.8E-11 1.7E-15 122.4 11.8 102 1428-1536 1-104 (224)
43 PRK01683 trans-aconitate 2-met 99.2 8.5E-11 1.8E-15 125.0 12.1 97 1426-1535 31-129 (258)
44 TIGR00537 hemK_rel_arch HemK-r 99.2 2E-10 4.2E-15 117.0 13.2 102 1426-1535 19-139 (179)
45 PRK00216 ubiE ubiquinone/menaq 99.2 4.3E-10 9.3E-15 115.8 14.2 105 1426-1536 51-158 (239)
46 PF13489 Methyltransf_23: Meth 99.2 1.4E-10 3E-15 112.1 9.9 94 1426-1537 22-116 (161)
47 PRK08317 hypothetical protein; 99.1 5E-10 1.1E-14 114.3 14.1 105 1426-1538 19-126 (241)
48 TIGR02021 BchM-ChlM magnesium 99.1 3.9E-10 8.4E-15 117.9 13.5 101 1426-1534 55-156 (219)
49 KOG1540|consensus 99.1 4.7E-10 1E-14 124.2 14.4 104 1423-1533 97-211 (296)
50 PRK00377 cbiT cobalt-precorrin 99.1 4.4E-10 9.5E-15 116.8 13.2 103 1426-1536 40-145 (198)
51 PLN02336 phosphoethanolamine N 99.1 2.4E-10 5.1E-15 132.2 12.3 102 1426-1536 266-369 (475)
52 COG4123 Predicted O-methyltran 99.1 1.2E-10 2.7E-15 128.0 9.5 108 1426-1534 44-168 (248)
53 PRK15001 SAM-dependent 23S rib 99.1 3.3E-10 7.1E-15 130.6 13.2 105 1427-1535 229-339 (378)
54 PRK00121 trmB tRNA (guanine-N( 99.1 2.1E-10 4.6E-15 120.2 10.7 108 1426-1535 40-155 (202)
55 PF08242 Methyltransf_12: Meth 99.1 1.7E-11 3.8E-16 112.6 2.2 97 1431-1532 1-99 (99)
56 PRK14967 putative methyltransf 99.1 5.1E-10 1.1E-14 118.2 13.2 104 1426-1535 36-158 (223)
57 PRK00517 prmA ribosomal protei 99.1 3.3E-10 7.2E-15 122.0 11.7 93 1426-1535 119-212 (250)
58 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 9.6E-10 2.1E-14 112.2 14.2 102 1426-1536 39-143 (223)
59 PRK08287 cobalt-precorrin-6Y C 99.1 1E-09 2.2E-14 112.5 14.4 97 1426-1534 31-129 (187)
60 TIGR02072 BioC biotin biosynth 99.1 4.1E-10 8.8E-15 115.5 11.0 100 1426-1536 34-135 (240)
61 PRK13944 protein-L-isoaspartat 99.1 5.2E-10 1.1E-14 117.4 11.9 98 1426-1535 72-172 (205)
62 PLN02336 phosphoethanolamine N 99.1 4.9E-10 1.1E-14 129.6 12.6 106 1426-1537 37-143 (475)
63 TIGR01983 UbiG ubiquinone bios 99.1 1.4E-09 3.1E-14 112.6 14.0 104 1426-1536 45-149 (224)
64 PRK14968 putative methyltransf 99.1 1.4E-09 3.1E-14 108.8 13.4 105 1426-1535 23-147 (188)
65 PRK11783 rlmL 23S rRNA m(2)G24 99.1 6.6E-10 1.4E-14 135.8 12.8 110 1426-1537 538-657 (702)
66 PF05401 NodS: Nodulation prot 99.1 4.5E-10 9.7E-15 120.6 9.9 116 1428-1562 45-161 (201)
67 TIGR02716 C20_methyl_CrtF C-20 99.1 1.8E-09 3.8E-14 118.8 14.5 105 1426-1536 149-254 (306)
68 TIGR03533 L3_gln_methyl protei 99.1 1.4E-09 3E-14 120.2 13.6 108 1426-1537 121-252 (284)
69 PRK06922 hypothetical protein; 99.1 1.5E-09 3.3E-14 131.8 15.0 108 1426-1536 418-537 (677)
70 PRK15128 23S rRNA m(5)C1962 me 99.1 1.2E-09 2.6E-14 126.3 13.5 116 1426-1541 220-344 (396)
71 COG4076 Predicted RNA methylas 99.1 1.1E-09 2.3E-14 117.5 11.9 137 1389-1547 9-146 (252)
72 TIGR00091 tRNA (guanine-N(7)-) 99.0 7.4E-10 1.6E-14 115.2 10.2 110 1426-1536 16-132 (194)
73 TIGR00080 pimt protein-L-isoas 99.0 1.1E-09 2.3E-14 115.2 11.5 97 1426-1535 77-176 (215)
74 smart00138 MeTrc Methyltransfe 99.0 1.4E-09 3E-14 119.1 12.1 107 1426-1536 99-242 (264)
75 TIGR01177 conserved hypothetic 99.0 2.1E-09 4.5E-14 120.2 13.5 104 1426-1534 182-292 (329)
76 PRK05134 bifunctional 3-demeth 99.0 2.8E-09 6.1E-14 111.8 13.3 103 1426-1536 48-151 (233)
77 PRK07580 Mg-protoporphyrin IX 99.0 2.7E-09 5.8E-14 110.8 12.9 100 1426-1533 63-163 (230)
78 PRK09489 rsmC 16S ribosomal RN 99.0 1.6E-09 3.4E-14 123.2 12.0 101 1427-1534 197-301 (342)
79 PRK11805 N5-glutamine S-adenos 99.0 2.2E-09 4.8E-14 120.1 12.9 105 1428-1536 135-263 (307)
80 TIGR03840 TMPT_Se_Te thiopurin 99.0 2.7E-09 5.9E-14 114.1 12.5 102 1426-1534 34-150 (213)
81 PRK05785 hypothetical protein; 99.0 3.1E-09 6.8E-14 113.8 12.7 90 1426-1530 51-141 (226)
82 PLN02490 MPBQ/MSBQ methyltrans 99.0 1.4E-09 3.1E-14 124.0 10.5 100 1426-1535 113-214 (340)
83 PRK13942 protein-L-isoaspartat 99.0 4.1E-09 9E-14 111.5 13.2 97 1426-1535 76-175 (212)
84 TIGR03587 Pse_Me-ase pseudamin 99.0 4.3E-09 9.3E-14 111.5 13.1 97 1426-1535 43-141 (204)
85 PRK11705 cyclopropane fatty ac 99.0 4.1E-09 9E-14 121.2 14.0 101 1425-1536 166-267 (383)
86 TIGR03534 RF_mod_PrmC protein- 99.0 4.7E-09 1E-13 110.1 13.2 105 1426-1535 87-216 (251)
87 TIGR00536 hemK_fam HemK family 99.0 4.4E-09 9.4E-14 115.5 13.1 106 1428-1537 116-245 (284)
88 PRK07402 precorrin-6B methylas 99.0 5.4E-09 1.2E-13 108.2 12.8 101 1426-1536 40-142 (196)
89 cd02440 AdoMet_MTases S-adenos 99.0 6.8E-09 1.5E-13 89.4 11.3 102 1429-1535 1-103 (107)
90 PRK06202 hypothetical protein; 99.0 4.8E-09 1E-13 110.9 12.5 98 1426-1532 60-163 (232)
91 PRK00811 spermidine synthase; 98.9 4.8E-09 1E-13 115.9 12.0 110 1426-1537 76-192 (283)
92 PRK09328 N5-glutamine S-adenos 98.9 1.4E-08 3.1E-13 108.5 14.7 105 1426-1535 108-237 (275)
93 PRK04266 fibrillarin; Provisio 98.9 8.3E-09 1.8E-13 111.5 12.9 102 1425-1535 71-175 (226)
94 PRK10901 16S rRNA methyltransf 98.9 8.9E-09 1.9E-13 119.3 14.0 113 1425-1540 243-376 (427)
95 PRK13255 thiopurine S-methyltr 98.9 7.8E-09 1.7E-13 111.0 12.3 101 1426-1533 37-152 (218)
96 PRK03522 rumB 23S rRNA methylu 98.9 7.1E-09 1.5E-13 115.5 12.4 101 1426-1536 173-274 (315)
97 PRK00312 pcm protein-L-isoaspa 98.9 7.5E-09 1.6E-13 108.1 11.7 96 1426-1535 78-174 (212)
98 KOG4300|consensus 98.9 3.9E-09 8.5E-14 114.5 9.5 104 1427-1536 77-182 (252)
99 PF08003 Methyltransf_9: Prote 98.9 5E-09 1.1E-13 118.5 10.6 106 1424-1536 113-219 (315)
100 PHA03411 putative methyltransf 98.9 8.3E-09 1.8E-13 115.5 12.2 100 1426-1535 64-182 (279)
101 PLN02781 Probable caffeoyl-CoA 98.9 1.4E-08 3E-13 109.7 13.5 107 1426-1538 68-180 (234)
102 PRK01544 bifunctional N5-gluta 98.9 7.6E-09 1.6E-13 122.8 12.6 107 1426-1536 138-269 (506)
103 PRK04457 spermidine synthase; 98.9 4.6E-09 1E-13 115.1 9.8 108 1426-1535 66-176 (262)
104 PRK10909 rsmD 16S rRNA m(2)G96 98.9 9.4E-09 2E-13 109.5 11.5 104 1426-1536 53-159 (199)
105 PRK14904 16S rRNA methyltransf 98.9 1.6E-08 3.4E-13 117.8 14.1 110 1425-1539 249-380 (445)
106 KOG1271|consensus 98.9 3.2E-09 7E-14 113.5 7.6 111 1429-1542 70-187 (227)
107 TIGR03438 probable methyltrans 98.9 2.4E-08 5.2E-13 110.9 14.7 110 1426-1536 63-177 (301)
108 TIGR00446 nop2p NOL1/NOP2/sun 98.9 1.4E-08 3.1E-13 110.8 12.6 110 1426-1539 71-202 (264)
109 TIGR00479 rumA 23S rRNA (uraci 98.9 5.3E-09 1.2E-13 120.4 9.8 102 1426-1535 292-395 (431)
110 PRK14902 16S rRNA methyltransf 98.9 1.4E-08 3.1E-13 117.8 13.3 112 1426-1540 250-383 (444)
111 TIGR00095 RNA methyltransferas 98.9 1.3E-08 2.9E-13 106.8 11.7 109 1426-1536 49-159 (189)
112 PRK11088 rrmA 23S rRNA methylt 98.9 6.2E-09 1.4E-13 113.2 9.6 91 1426-1535 85-180 (272)
113 PRK11188 rrmJ 23S rRNA methylt 98.9 1.8E-08 3.9E-13 107.1 12.5 98 1426-1534 51-163 (209)
114 TIGR00563 rsmB ribosomal RNA s 98.9 1.7E-08 3.7E-13 116.7 13.4 115 1425-1540 237-372 (426)
115 PRK14901 16S rRNA methyltransf 98.9 1.7E-08 3.6E-13 117.2 13.4 114 1426-1540 252-388 (434)
116 TIGR03704 PrmC_rel_meth putati 98.9 2E-08 4.3E-13 109.5 13.0 103 1427-1535 87-215 (251)
117 TIGR02085 meth_trns_rumB 23S r 98.9 8E-09 1.7E-13 118.1 10.3 100 1426-1535 233-333 (374)
118 PRK14966 unknown domain/N5-glu 98.9 2.7E-08 5.8E-13 116.6 14.7 106 1426-1535 251-380 (423)
119 PRK14903 16S rRNA methyltransf 98.8 1.9E-08 4.1E-13 117.3 13.2 111 1426-1539 237-369 (431)
120 PLN03075 nicotianamine synthas 98.8 2.9E-08 6.3E-13 111.9 14.1 106 1426-1536 123-233 (296)
121 PLN02585 magnesium protoporphy 98.8 1.9E-08 4.2E-13 113.6 12.4 99 1426-1533 144-247 (315)
122 smart00650 rADc Ribosomal RNA 98.8 1.6E-08 3.4E-13 102.8 10.5 100 1426-1536 13-113 (169)
123 COG2890 HemK Methylase of poly 98.8 2.2E-08 4.7E-13 111.3 12.4 102 1429-1536 113-238 (280)
124 COG2813 RsmC 16S RNA G1207 met 98.8 1.6E-08 3.5E-13 114.1 11.3 103 1426-1534 158-264 (300)
125 PRK14121 tRNA (guanine-N(7)-)- 98.8 2.2E-08 4.8E-13 116.3 12.4 109 1426-1536 122-235 (390)
126 COG1092 Predicted SAM-dependen 98.8 1.2E-08 2.6E-13 118.6 9.8 116 1426-1541 217-341 (393)
127 PHA03412 putative methyltransf 98.8 1.9E-08 4.2E-13 110.7 10.7 101 1426-1536 49-163 (241)
128 COG2242 CobL Precorrin-6B meth 98.8 3.3E-08 7.1E-13 105.7 11.9 103 1424-1537 32-136 (187)
129 COG2263 Predicted RNA methylas 98.8 2.8E-08 6.1E-13 106.6 10.1 76 1424-1507 43-119 (198)
130 COG2518 Pcm Protein-L-isoaspar 98.8 3.7E-08 8E-13 106.7 11.1 96 1425-1534 71-167 (209)
131 COG2265 TrmA SAM-dependent met 98.8 4.8E-08 1E-12 114.7 12.7 103 1426-1536 293-396 (432)
132 PF10672 Methyltrans_SAM: S-ad 98.8 3E-08 6.4E-13 111.3 10.3 112 1426-1538 123-240 (286)
133 PF03291 Pox_MCEL: mRNA cappin 98.7 7.8E-08 1.7E-12 109.5 13.3 110 1426-1535 62-185 (331)
134 COG4106 Tam Trans-aconitate me 98.7 1.8E-08 4E-13 110.0 7.8 100 1426-1538 30-131 (257)
135 COG4976 Predicted methyltransf 98.7 6.5E-09 1.4E-13 114.2 4.3 102 1427-1539 126-228 (287)
136 PRK13168 rumA 23S rRNA m(5)U19 98.7 1E-07 2.2E-12 110.9 14.1 102 1426-1536 297-400 (443)
137 PF10294 Methyltransf_16: Puta 98.7 7.1E-08 1.5E-12 99.8 11.1 104 1426-1533 45-153 (173)
138 TIGR00438 rrmJ cell division p 98.7 8E-08 1.7E-12 99.0 11.4 99 1426-1535 32-145 (188)
139 PLN02366 spermidine synthase 98.7 8.2E-08 1.8E-12 108.4 12.1 112 1426-1538 91-208 (308)
140 TIGR00417 speE spermidine synt 98.7 8.6E-08 1.9E-12 105.0 11.3 110 1426-1537 72-187 (270)
141 PF03602 Cons_hypoth95: Conser 98.7 3.5E-08 7.6E-13 103.8 7.9 109 1426-1536 42-153 (183)
142 PTZ00146 fibrillarin; Provisio 98.7 1.3E-07 2.9E-12 106.6 12.8 102 1425-1534 131-235 (293)
143 PRK13943 protein-L-isoaspartat 98.7 1.1E-07 2.3E-12 108.0 12.0 96 1426-1534 80-178 (322)
144 PF01135 PCMT: Protein-L-isoas 98.7 1.5E-07 3.2E-12 101.3 11.4 96 1426-1534 72-170 (209)
145 PLN02476 O-methyltransferase 98.6 1.7E-07 3.7E-12 105.0 12.2 106 1426-1537 118-229 (278)
146 KOG2361|consensus 98.6 5.4E-08 1.2E-12 107.5 8.0 178 1429-1635 74-263 (264)
147 PRK01581 speE spermidine synth 98.6 1.9E-07 4.2E-12 108.1 12.2 110 1426-1537 150-269 (374)
148 PF01596 Methyltransf_3: O-met 98.6 1.6E-07 3.5E-12 100.7 10.7 109 1426-1540 45-159 (205)
149 PLN02672 methionine S-methyltr 98.6 2.2E-07 4.7E-12 118.6 13.4 112 1426-1539 118-281 (1082)
150 COG2519 GCD14 tRNA(1-methylade 98.6 2.9E-07 6.2E-12 102.3 12.6 99 1424-1534 92-193 (256)
151 TIGR02081 metW methionine bios 98.6 1.1E-07 2.4E-12 98.5 8.7 91 1426-1528 13-104 (194)
152 PRK03612 spermidine synthase; 98.6 1.1E-07 2.3E-12 113.4 9.4 110 1426-1537 297-416 (521)
153 KOG1975|consensus 98.6 1.5E-07 3.3E-12 107.3 9.8 108 1426-1533 117-234 (389)
154 PF00891 Methyltransf_2: O-met 98.6 8.3E-07 1.8E-11 94.5 13.6 97 1426-1536 100-199 (241)
155 COG0742 N6-adenine-specific me 98.5 8.9E-07 1.9E-11 94.9 13.0 115 1425-1539 42-157 (187)
156 PRK13256 thiopurine S-methyltr 98.5 5.1E-07 1.1E-11 98.7 11.4 108 1426-1535 43-162 (226)
157 KOG2904|consensus 98.5 9.3E-07 2E-11 99.5 13.6 111 1426-1536 148-285 (328)
158 KOG2899|consensus 98.5 2.9E-07 6.4E-12 102.1 9.4 104 1426-1534 58-207 (288)
159 PF08704 GCD14: tRNA methyltra 98.5 9.7E-07 2.1E-11 97.6 13.3 101 1425-1534 39-144 (247)
160 COG4122 Predicted O-methyltran 98.5 6.6E-07 1.4E-11 97.6 11.7 108 1426-1540 59-170 (219)
161 KOG3010|consensus 98.5 1E-07 2.3E-12 105.3 4.9 97 1429-1533 36-133 (261)
162 PLN02589 caffeoyl-CoA O-methyl 98.5 9.6E-07 2.1E-11 97.4 11.5 108 1426-1539 79-193 (247)
163 PTZ00338 dimethyladenosine tra 98.4 9.7E-07 2.1E-11 99.2 10.5 78 1426-1509 36-114 (294)
164 PRK14896 ksgA 16S ribosomal RN 98.4 1.2E-06 2.5E-11 95.7 10.4 74 1426-1508 29-103 (258)
165 PF02475 Met_10: Met-10+ like- 98.4 1.2E-06 2.7E-11 94.1 9.8 97 1426-1533 101-199 (200)
166 PF05724 TPMT: Thiopurine S-me 98.4 6.9E-07 1.5E-11 96.5 7.6 104 1426-1533 37-152 (218)
167 KOG1541|consensus 98.4 9.7E-07 2.1E-11 97.1 8.6 101 1426-1535 50-159 (270)
168 PF02390 Methyltransf_4: Putat 98.4 1.7E-06 3.6E-11 91.9 10.0 106 1429-1535 20-132 (195)
169 PLN02823 spermine synthase 98.4 1.9E-06 4E-11 98.8 10.8 109 1426-1536 103-220 (336)
170 PF01170 UPF0020: Putative RNA 98.3 5.1E-06 1.1E-10 86.9 12.9 105 1426-1533 28-148 (179)
171 PF07021 MetW: Methionine bios 98.3 2.2E-06 4.7E-11 92.4 9.0 94 1426-1534 13-107 (193)
172 PRK00274 ksgA 16S ribosomal RN 98.3 2.2E-06 4.7E-11 94.4 9.2 75 1426-1508 42-117 (272)
173 COG2521 Predicted archaeal met 98.3 8.8E-07 1.9E-11 98.1 5.6 107 1426-1533 134-242 (287)
174 PRK11727 23S rRNA mA1618 methy 98.3 3.3E-06 7.1E-11 96.4 10.0 84 1426-1509 114-202 (321)
175 PRK05031 tRNA (uracil-5-)-meth 98.3 5.7E-06 1.2E-10 94.9 11.9 98 1428-1535 208-319 (362)
176 COG1041 Predicted DNA modifica 98.3 6.1E-06 1.3E-10 95.3 12.0 107 1425-1536 196-310 (347)
177 TIGR02143 trmA_only tRNA (urac 98.2 4.3E-06 9.4E-11 95.7 10.2 98 1428-1535 199-310 (353)
178 PRK04338 N(2),N(2)-dimethylgua 98.2 4.8E-06 1E-10 96.7 10.7 98 1427-1535 58-157 (382)
179 PF05891 Methyltransf_PK: AdoM 98.2 3.3E-06 7.1E-11 92.5 8.7 106 1426-1536 55-161 (218)
180 PF01739 CheR: CheR methyltran 98.2 5.7E-06 1.2E-10 88.6 9.6 107 1426-1536 31-175 (196)
181 PF12147 Methyltransf_20: Puta 98.2 2E-05 4.3E-10 89.7 14.0 115 1426-1540 135-253 (311)
182 KOG0820|consensus 98.2 4E-06 8.7E-11 94.4 8.1 80 1423-1508 55-135 (315)
183 TIGR00755 ksgA dimethyladenosi 98.2 1.7E-05 3.6E-10 86.2 12.3 74 1426-1508 29-106 (253)
184 TIGR00478 tly hemolysin TlyA f 98.2 1.5E-05 3.2E-10 87.4 11.8 38 1426-1463 75-113 (228)
185 COG0421 SpeE Spermidine syntha 98.1 8.4E-06 1.8E-10 91.8 10.1 113 1428-1542 78-196 (282)
186 PLN02232 ubiquinone biosynthes 98.1 5.2E-06 1.1E-10 84.8 7.7 78 1453-1536 1-81 (160)
187 COG0220 Predicted S-adenosylme 98.1 1E-05 2.2E-10 88.7 10.2 108 1428-1536 50-164 (227)
188 PRK11933 yebU rRNA (cytosine-C 98.1 2.3E-05 5E-10 93.5 13.1 112 1425-1539 112-245 (470)
189 PF01564 Spermine_synth: Sperm 98.1 9.8E-06 2.1E-10 88.9 9.2 109 1426-1536 76-191 (246)
190 COG2520 Predicted methyltransf 98.1 1.2E-05 2.7E-10 92.7 10.1 98 1426-1533 188-286 (341)
191 PRK10611 chemotaxis methyltran 98.1 1.3E-05 2.9E-10 90.4 9.5 107 1427-1536 116-262 (287)
192 COG0500 SmtA SAM-dependent met 98.1 8.4E-05 1.8E-09 63.4 12.1 102 1430-1538 52-157 (257)
193 PF05958 tRNA_U5-meth_tr: tRNA 98.0 3.6E-05 7.8E-10 88.3 11.9 80 1429-1510 199-292 (352)
194 KOG3191|consensus 98.0 4E-05 8.7E-10 82.9 11.4 101 1427-1533 44-165 (209)
195 PF06080 DUF938: Protein of un 98.0 1.4E-05 3E-10 86.9 8.1 105 1429-1535 28-140 (204)
196 KOG1501|consensus 98.0 4E-06 8.6E-11 98.6 4.0 160 1495-1662 428-599 (636)
197 TIGR00308 TRM1 tRNA(guanine-26 98.0 2.2E-05 4.8E-10 91.3 9.6 99 1427-1535 45-146 (374)
198 PF05219 DREV: DREV methyltran 98.0 2.4E-05 5.2E-10 87.8 9.4 93 1426-1536 94-188 (265)
199 PRK11783 rlmL 23S rRNA m(2)G24 98.0 5.6E-05 1.2E-09 93.6 13.3 108 1426-1534 190-345 (702)
200 PF09445 Methyltransf_15: RNA 97.9 2.9E-05 6.4E-10 81.8 7.2 75 1429-1505 2-78 (163)
201 COG0030 KsgA Dimethyladenosine 97.9 5.9E-05 1.3E-09 84.5 9.8 76 1426-1509 30-108 (259)
202 KOG3420|consensus 97.8 1.6E-05 3.5E-10 83.6 4.8 77 1425-1506 47-124 (185)
203 COG0116 Predicted N6-adenine-s 97.8 0.00016 3.4E-09 84.8 12.8 109 1426-1537 191-345 (381)
204 PF02527 GidB: rRNA small subu 97.8 0.00028 6.1E-09 75.4 12.9 97 1429-1537 51-149 (184)
205 COG1352 CheR Methylase of chem 97.8 0.00015 3.2E-09 81.6 11.3 107 1426-1536 96-241 (268)
206 COG0144 Sun tRNA and rRNA cyto 97.8 0.00024 5.3E-09 81.9 13.2 117 1423-1540 153-292 (355)
207 PF04816 DUF633: Family of unk 97.7 0.00018 3.9E-09 77.9 10.7 96 1430-1533 1-98 (205)
208 PRK00536 speE spermidine synth 97.7 0.00015 3.2E-09 81.4 10.0 102 1426-1542 72-177 (262)
209 KOG2940|consensus 97.7 4.1E-05 8.9E-10 85.1 5.6 99 1428-1535 74-173 (325)
210 PF01728 FtsJ: FtsJ-like methy 97.7 4.9E-05 1.1E-09 78.0 5.4 97 1426-1533 23-136 (181)
211 COG3897 Predicted methyltransf 97.7 0.00011 2.5E-09 80.1 8.0 75 1425-1507 78-153 (218)
212 KOG2187|consensus 97.7 6.9E-05 1.5E-09 90.0 6.8 105 1393-1509 360-468 (534)
213 PRK04148 hypothetical protein; 97.6 0.00036 7.7E-09 72.0 10.7 66 1426-1502 16-83 (134)
214 PRK01544 bifunctional N5-gluta 97.6 0.00021 4.6E-09 85.8 10.3 108 1426-1535 347-461 (506)
215 KOG1663|consensus 97.6 0.00059 1.3E-08 75.9 12.3 110 1426-1541 73-188 (237)
216 COG3963 Phospholipid N-methylt 97.5 0.00026 5.6E-09 76.1 8.4 104 1426-1536 48-156 (194)
217 PF03141 Methyltransf_29: Puta 97.5 7.9E-05 1.7E-09 89.4 4.3 101 1428-1540 119-223 (506)
218 PF02384 N6_Mtase: N-6 DNA Met 97.5 0.00052 1.1E-08 76.0 10.1 107 1426-1533 46-180 (311)
219 PF13578 Methyltransf_24: Meth 97.4 4.7E-05 1E-09 71.8 1.3 100 1431-1536 1-105 (106)
220 PRK00050 16S rRNA m(4)C1402 me 97.4 0.00022 4.8E-09 81.2 6.5 76 1426-1504 19-98 (296)
221 PF07942 N2227: N2227-like pro 97.4 0.0018 3.9E-08 73.3 13.5 104 1425-1533 55-199 (270)
222 PF00398 RrnaAD: Ribosomal RNA 97.4 0.00091 2E-08 73.6 11.0 87 1426-1519 30-118 (262)
223 PF08123 DOT1: Histone methyla 97.4 0.00082 1.8E-08 72.9 10.0 104 1426-1533 42-155 (205)
224 KOG2915|consensus 97.3 0.0014 3E-08 74.8 11.5 100 1425-1533 104-207 (314)
225 KOG1661|consensus 97.3 0.00088 1.9E-08 74.1 8.9 96 1426-1533 82-190 (237)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.3 0.0011 2.4E-08 74.4 9.8 111 1425-1535 55-198 (256)
227 COG1189 Predicted rRNA methyla 97.2 0.0013 2.8E-08 73.6 9.8 96 1425-1534 78-176 (245)
228 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.2 0.00092 2E-08 75.1 8.5 113 1425-1540 84-223 (283)
229 PF05148 Methyltransf_8: Hypot 97.2 0.00046 1E-08 76.0 6.0 87 1426-1536 72-158 (219)
230 COG0357 GidB Predicted S-adeno 97.2 0.0021 4.5E-08 70.8 10.6 95 1427-1533 68-165 (215)
231 TIGR01444 fkbM_fam methyltrans 97.2 0.001 2.2E-08 65.2 7.3 57 1429-1486 1-59 (143)
232 TIGR02987 met_A_Alw26 type II 97.2 0.0018 3.9E-08 77.6 10.5 81 1426-1507 31-123 (524)
233 PRK11760 putative 23S rRNA C24 97.2 0.0013 2.9E-08 76.7 9.1 87 1425-1529 210-296 (357)
234 COG0293 FtsJ 23S rRNA methylas 97.1 0.0047 1E-07 67.9 12.3 97 1426-1533 45-156 (205)
235 PF09243 Rsm22: Mitochondrial 97.1 0.0027 5.8E-08 71.0 10.7 100 1424-1528 31-133 (274)
236 KOG3045|consensus 97.1 0.00086 1.9E-08 76.0 6.6 84 1426-1535 180-263 (325)
237 PF05971 Methyltransf_10: Prot 97.0 0.0026 5.6E-08 73.0 9.8 83 1427-1510 103-191 (299)
238 KOG2730|consensus 97.0 0.0004 8.7E-09 77.1 3.3 104 1426-1533 94-199 (263)
239 PF13679 Methyltransf_32: Meth 97.0 0.0083 1.8E-07 60.6 12.0 73 1426-1502 25-105 (141)
240 PF03059 NAS: Nicotianamine sy 96.9 0.007 1.5E-07 68.9 11.7 105 1426-1535 120-229 (276)
241 KOG1269|consensus 96.9 0.0014 2.9E-08 76.8 6.2 104 1426-1536 110-215 (364)
242 COG4262 Predicted spermidine s 96.9 0.0046 1E-07 72.8 10.1 118 1426-1545 289-416 (508)
243 TIGR03439 methyl_EasF probable 96.8 0.014 3.1E-07 67.4 13.6 107 1426-1535 76-196 (319)
244 PF01269 Fibrillarin: Fibrilla 96.8 0.021 4.5E-07 63.9 13.8 104 1424-1535 71-177 (229)
245 KOG1331|consensus 96.8 0.0014 3E-08 74.9 4.6 95 1426-1533 45-140 (293)
246 PRK10742 putative methyltransf 96.7 0.006 1.3E-07 68.7 9.5 78 1429-1509 91-177 (250)
247 KOG1709|consensus 96.7 0.025 5.4E-07 63.4 14.0 101 1425-1534 100-204 (271)
248 KOG3178|consensus 96.7 0.0042 9E-08 72.5 8.4 98 1427-1537 178-276 (342)
249 KOG3201|consensus 96.6 0.0014 3.1E-08 70.4 3.6 105 1426-1534 29-138 (201)
250 KOG2352|consensus 96.6 0.0095 2.1E-07 72.0 9.9 100 1428-1533 50-158 (482)
251 COG2384 Predicted SAM-dependen 96.5 0.024 5.1E-07 63.3 12.1 95 1426-1528 16-112 (226)
252 PF04989 CmcI: Cephalosporin h 96.0 0.049 1.1E-06 60.2 10.7 123 1394-1536 14-147 (206)
253 KOG1122|consensus 95.9 0.046 1E-06 65.6 11.0 120 1423-1544 238-379 (460)
254 PF11968 DUF3321: Putative met 95.9 0.0089 1.9E-07 66.3 4.8 87 1427-1531 52-139 (219)
255 KOG1227|consensus 95.9 0.0033 7.1E-08 72.5 1.4 95 1426-1531 194-290 (351)
256 PF02005 TRM: N2,N2-dimethylgu 95.7 0.032 7E-07 65.7 8.6 101 1427-1536 50-154 (377)
257 KOG2798|consensus 95.6 0.086 1.9E-06 61.7 11.3 129 1398-1533 125-293 (369)
258 COG1889 NOP1 Fibrillarin-like 95.5 0.11 2.3E-06 58.1 11.1 105 1423-1535 73-179 (231)
259 KOG4589|consensus 95.4 0.12 2.6E-06 57.3 10.9 96 1425-1533 68-181 (232)
260 KOG3987|consensus 95.3 0.0052 1.1E-07 68.3 0.3 93 1426-1536 112-207 (288)
261 PF04672 Methyltransf_19: S-ad 95.3 0.046 1E-06 62.3 7.6 108 1428-1538 70-192 (267)
262 PF04445 SAM_MT: Putative SAM- 95.2 0.047 1E-06 61.3 7.4 78 1428-1508 77-163 (234)
263 PF06962 rRNA_methylase: Putat 95.2 0.086 1.9E-06 55.4 8.8 81 1451-1535 1-91 (140)
264 PHA01634 hypothetical protein 95.2 0.06 1.3E-06 56.7 7.4 71 1426-1503 28-99 (156)
265 KOG4058|consensus 95.0 0.051 1.1E-06 58.3 6.5 99 1426-1535 72-171 (199)
266 KOG2793|consensus 94.9 0.096 2.1E-06 59.3 8.9 103 1427-1533 87-196 (248)
267 cd00315 Cyt_C5_DNA_methylase C 94.7 0.14 3.1E-06 57.5 9.3 69 1429-1506 2-72 (275)
268 COG5459 Predicted rRNA methyla 94.4 0.075 1.6E-06 62.9 6.5 112 1423-1536 110-225 (484)
269 PF00145 DNA_methylase: C-5 cy 94.3 0.12 2.6E-06 56.4 7.7 93 1429-1533 2-108 (335)
270 PF03141 Methyltransf_29: Puta 94.3 0.057 1.2E-06 65.8 5.7 100 1428-1536 367-467 (506)
271 PF01861 DUF43: Protein of unk 94.1 1 2.2E-05 51.4 14.4 100 1425-1533 43-146 (243)
272 KOG1562|consensus 93.8 0.17 3.6E-06 59.0 7.8 111 1425-1536 120-236 (337)
273 TIGR00006 S-adenosyl-methyltra 93.3 0.27 5.8E-06 57.1 8.4 77 1426-1504 20-100 (305)
274 KOG3115|consensus 93.0 0.2 4.2E-06 56.2 6.3 59 1429-1487 63-129 (249)
275 KOG2198|consensus 92.4 0.78 1.7E-05 54.8 10.6 122 1423-1547 152-305 (375)
276 KOG2920|consensus 92.2 0.11 2.3E-06 59.9 3.3 106 1426-1534 116-232 (282)
277 PF11599 AviRa: RRNA methyltra 92.0 0.84 1.8E-05 51.7 9.6 107 1426-1533 51-211 (246)
278 COG1064 AdhP Zn-dependent alco 91.9 0.59 1.3E-05 55.2 8.9 92 1424-1536 164-259 (339)
279 PRK09424 pntA NAD(P) transhydr 91.6 1.1 2.4E-05 55.4 10.9 43 1423-1466 161-206 (509)
280 COG1063 Tdh Threonine dehydrog 91.2 0.4 8.7E-06 55.4 6.5 96 1426-1535 168-268 (350)
281 COG4798 Predicted methyltransf 91.2 0.57 1.2E-05 52.4 7.2 111 1422-1537 44-167 (238)
282 PRK09880 L-idonate 5-dehydroge 91.1 1 2.2E-05 50.7 9.4 95 1426-1536 169-266 (343)
283 KOG2671|consensus 91.0 0.28 6.1E-06 58.2 5.1 79 1425-1506 207-294 (421)
284 PF07091 FmrO: Ribosomal RNA m 90.9 0.78 1.7E-05 52.4 8.2 78 1426-1509 105-184 (251)
285 KOG1253|consensus 90.7 0.18 3.8E-06 61.7 3.2 108 1426-1540 109-220 (525)
286 KOG0024|consensus 90.1 0.49 1.1E-05 55.9 5.9 97 1425-1535 168-272 (354)
287 TIGR00027 mthyl_TIGR00027 meth 90.1 3.3 7.3E-05 46.8 12.2 128 1399-1538 65-199 (260)
288 PRK01747 mnmC bifunctional tRN 89.7 0.99 2.1E-05 56.2 8.5 106 1426-1533 57-203 (662)
289 KOG1099|consensus 89.3 0.92 2E-05 51.9 7.0 96 1427-1533 42-160 (294)
290 KOG1596|consensus 89.3 0.86 1.9E-05 52.4 6.8 100 1424-1535 154-260 (317)
291 TIGR00675 dcm DNA-methyltransf 88.8 1.5 3.2E-05 50.5 8.4 67 1430-1505 1-68 (315)
292 PLN02668 indole-3-acetate carb 88.4 2.9 6.2E-05 50.4 10.7 21 1515-1535 216-236 (386)
293 COG0286 HsdM Type I restrictio 88.3 2.9 6.2E-05 51.2 10.8 82 1426-1507 186-275 (489)
294 PF01555 N6_N4_Mtase: DNA meth 88.0 0.77 1.7E-05 47.5 5.1 40 1426-1466 191-231 (231)
295 COG1867 TRM1 N2,N2-dimethylgua 87.1 2 4.4E-05 51.6 8.3 99 1427-1535 53-153 (380)
296 cd08283 FDH_like_1 Glutathione 86.8 0.91 2E-05 52.3 5.2 42 1426-1467 184-228 (386)
297 PF05711 TylF: Macrocin-O-meth 86.2 6.3 0.00014 45.1 11.2 125 1398-1539 56-215 (248)
298 COG3129 Predicted SAM-dependen 86.1 1.1 2.3E-05 51.4 5.2 83 1426-1509 78-166 (292)
299 PRK11524 putative methyltransf 85.5 1 2.2E-05 50.9 4.6 58 1476-1535 8-79 (284)
300 PRK11524 putative methyltransf 85.4 1.4 3.1E-05 49.8 5.7 44 1426-1470 208-252 (284)
301 PF03492 Methyltransf_7: SAM d 84.9 5.5 0.00012 46.7 10.4 104 1426-1535 16-182 (334)
302 PF02737 3HCDH_N: 3-hydroxyacy 84.0 5.5 0.00012 42.6 9.1 103 1429-1544 1-122 (180)
303 COG0270 Dcm Site-specific DNA 83.9 3.2 6.9E-05 48.1 7.8 75 1427-1507 3-78 (328)
304 PF02636 Methyltransf_28: Puta 82.5 4 8.7E-05 45.2 7.6 75 1427-1509 19-108 (252)
305 PRK10458 DNA cytosine methylas 81.9 9.1 0.0002 47.2 10.9 60 1426-1488 87-147 (467)
306 PRK10309 galactitol-1-phosphat 81.8 5.4 0.00012 45.0 8.4 97 1426-1535 160-259 (347)
307 COG1568 Predicted methyltransf 81.7 5.5 0.00012 46.9 8.4 99 1423-1529 149-250 (354)
308 PRK13699 putative methylase; P 81.3 2.9 6.2E-05 46.5 6.0 44 1426-1470 163-207 (227)
309 cd08281 liver_ADH_like1 Zinc-d 80.3 4.9 0.00011 46.1 7.5 95 1426-1535 191-289 (371)
310 TIGR01202 bchC 2-desacetyl-2-h 79.9 5.3 0.00011 44.9 7.5 84 1426-1535 144-230 (308)
311 cd08237 ribitol-5-phosphate_DH 79.8 8 0.00017 44.1 8.9 89 1426-1535 163-255 (341)
312 PRK13699 putative methylase; P 79.4 2.6 5.7E-05 46.8 4.9 56 1477-1534 2-70 (227)
313 TIGR03451 mycoS_dep_FDH mycoth 79.1 7.3 0.00016 44.4 8.4 96 1426-1535 176-275 (358)
314 KOG2078|consensus 78.8 0.79 1.7E-05 55.7 0.7 61 1426-1487 249-311 (495)
315 PF10354 DUF2431: Domain of un 78.8 12 0.00025 40.2 9.3 105 1432-1536 2-125 (166)
316 cd08239 THR_DH_like L-threonin 78.0 7.3 0.00016 43.6 7.9 96 1426-1535 163-261 (339)
317 PF04072 LCM: Leucine carboxyl 78.0 12 0.00025 39.9 9.0 93 1428-1521 80-181 (183)
318 PRK12548 shikimate 5-dehydroge 77.7 9.3 0.0002 43.6 8.7 132 1426-1567 125-264 (289)
319 PF03269 DUF268: Caenorhabditi 77.1 2.1 4.5E-05 47.0 3.2 96 1427-1534 2-109 (177)
320 COG0275 Predicted S-adenosylme 76.5 7.1 0.00015 46.2 7.4 78 1425-1504 22-104 (314)
321 PF06859 Bin3: Bicoid-interact 75.7 2 4.4E-05 44.1 2.5 40 1496-1535 1-43 (110)
322 cd08230 glucose_DH Glucose deh 74.9 9.8 0.00021 43.3 7.9 91 1426-1535 172-268 (355)
323 cd00401 AdoHcyase S-adenosyl-L 74.4 14 0.00031 44.9 9.4 86 1426-1536 201-289 (413)
324 PF01795 Methyltransf_5: MraW 74.1 6.1 0.00013 46.5 6.2 77 1426-1504 20-101 (310)
325 PF03721 UDPG_MGDP_dh_N: UDP-g 74.0 13 0.00029 40.1 8.2 100 1428-1535 1-119 (185)
326 TIGR03366 HpnZ_proposed putati 74.0 7.5 0.00016 42.9 6.5 94 1426-1535 120-217 (280)
327 PRK05786 fabG 3-ketoacyl-(acyl 73.6 29 0.00063 36.6 10.4 75 1426-1504 4-89 (238)
328 PF07757 AdoMet_MTase: Predict 72.6 2.7 5.9E-05 43.4 2.5 32 1426-1458 58-89 (112)
329 TIGR00561 pntA NAD(P) transhyd 72.5 8.2 0.00018 48.1 7.0 41 1424-1465 161-204 (511)
330 PRK05854 short chain dehydroge 71.4 17 0.00036 41.3 8.6 79 1425-1504 12-101 (313)
331 PRK07066 3-hydroxybutyryl-CoA 71.3 21 0.00046 42.0 9.7 97 1428-1536 8-119 (321)
332 PLN02740 Alcohol dehydrogenase 71.1 13 0.00028 43.1 7.9 42 1425-1466 197-241 (381)
333 cd08232 idonate-5-DH L-idonate 70.6 23 0.0005 39.5 9.4 93 1426-1534 165-260 (339)
334 PLN02827 Alcohol dehydrogenase 70.4 13 0.00028 43.3 7.6 40 1426-1465 193-235 (378)
335 PRK06701 short chain dehydroge 70.3 30 0.00065 38.8 10.2 75 1426-1503 45-131 (290)
336 PRK08293 3-hydroxybutyryl-CoA 70.2 27 0.00059 39.4 9.9 96 1428-1535 4-119 (287)
337 COG4301 Uncharacterized conser 70.1 53 0.0011 38.8 12.0 105 1426-1535 78-192 (321)
338 PRK09260 3-hydroxybutyryl-CoA 69.2 23 0.0005 40.0 9.1 98 1429-1538 3-119 (288)
339 cd08254 hydroxyacyl_CoA_DH 6-h 68.9 21 0.00046 39.3 8.5 93 1426-1535 165-262 (338)
340 cd05188 MDR Medium chain reduc 68.5 13 0.00028 39.1 6.5 94 1426-1535 134-231 (271)
341 COG3510 CmcI Cephalosporin hyd 67.3 38 0.00082 38.7 9.9 117 1396-1538 53-182 (237)
342 PRK05808 3-hydroxybutyryl-CoA 67.1 45 0.00097 37.6 10.7 98 1429-1539 5-121 (282)
343 PRK07530 3-hydroxybutyryl-CoA 67.0 50 0.0011 37.4 11.1 99 1428-1539 5-122 (292)
344 COG4627 Uncharacterized protei 66.8 2.2 4.8E-05 46.7 0.5 47 1490-1537 41-87 (185)
345 PRK06035 3-hydroxyacyl-CoA deh 66.2 40 0.00086 38.2 10.2 93 1428-1533 4-118 (291)
346 PRK07688 thiamine/molybdopteri 65.9 11 0.00024 44.4 5.9 33 1426-1458 23-57 (339)
347 COG1565 Uncharacterized conser 65.7 10 0.00023 45.7 5.7 45 1426-1470 77-131 (370)
348 KOG2352|consensus 65.6 6.9 0.00015 48.5 4.4 108 1426-1534 295-414 (482)
349 PF00107 ADH_zinc_N: Zinc-bind 64.5 5.6 0.00012 38.5 2.8 85 1436-1538 1-91 (130)
350 PRK15001 SAM-dependent 23S rib 64.4 39 0.00084 40.9 10.1 94 1429-1535 47-141 (378)
351 TIGR02356 adenyl_thiF thiazole 64.3 11 0.00024 41.0 5.2 33 1426-1458 20-54 (202)
352 PF10237 N6-adenineMlase: Prob 64.2 61 0.0013 35.3 10.5 98 1426-1536 25-123 (162)
353 PRK07819 3-hydroxybutyryl-CoA 64.1 33 0.00072 39.3 9.1 98 1428-1538 6-123 (286)
354 PRK08594 enoyl-(acyl carrier p 61.9 67 0.0015 35.3 10.7 77 1426-1504 6-95 (257)
355 cd08293 PTGR2 Prostaglandin re 61.7 23 0.00051 39.6 7.3 92 1428-1534 156-252 (345)
356 PLN03209 translocon at the inn 61.7 43 0.00093 42.7 10.2 77 1426-1504 79-167 (576)
357 PRK12475 thiamine/molybdopteri 61.6 17 0.00037 42.8 6.5 78 1426-1504 23-124 (338)
358 TIGR02354 thiF_fam2 thiamine b 61.4 46 0.001 36.6 9.3 33 1426-1458 20-54 (200)
359 cd08285 NADP_ADH NADP(H)-depen 61.2 26 0.00056 39.6 7.6 95 1426-1534 166-264 (351)
360 COG1748 LYS9 Saccharopine dehy 61.1 13 0.00027 45.2 5.4 75 1428-1507 2-79 (389)
361 COG3315 O-Methyltransferase in 61.0 59 0.0013 38.1 10.5 109 1427-1536 93-209 (297)
362 PF07279 DUF1442: Protein of u 60.6 65 0.0014 37.0 10.3 100 1426-1534 41-146 (218)
363 PRK06130 3-hydroxybutyryl-CoA 60.4 58 0.0013 37.1 10.1 96 1428-1535 5-114 (311)
364 KOG2651|consensus 60.4 25 0.00054 43.2 7.5 41 1426-1466 153-194 (476)
365 PLN02989 cinnamyl-alcohol dehy 60.2 55 0.0012 36.7 9.8 76 1426-1503 4-84 (325)
366 KOG3924|consensus 60.0 24 0.00052 43.3 7.4 104 1426-1533 192-305 (419)
367 PRK07063 short chain dehydroge 59.7 42 0.0009 36.2 8.5 78 1426-1504 6-94 (260)
368 PRK07533 enoyl-(acyl carrier p 58.8 89 0.0019 34.3 10.9 76 1425-1504 8-96 (258)
369 cd08300 alcohol_DH_class_III c 58.8 39 0.00084 39.0 8.6 40 1426-1465 186-228 (368)
370 PRK07985 oxidoreductase; Provi 58.5 88 0.0019 35.3 11.0 75 1426-1503 48-135 (294)
371 cd08277 liver_alcohol_DH_like 58.5 40 0.00088 38.8 8.6 41 1425-1465 183-226 (365)
372 PRK07806 short chain dehydroge 58.4 69 0.0015 34.2 9.8 76 1426-1504 5-92 (248)
373 PRK08644 thiamine biosynthesis 58.2 21 0.00045 39.5 6.0 33 1426-1458 27-61 (212)
374 PF05206 TRM13: Methyltransfer 57.7 27 0.00058 40.3 7.0 63 1426-1488 18-86 (259)
375 PRK06128 oxidoreductase; Provi 57.6 82 0.0018 35.4 10.6 76 1426-1504 54-142 (300)
376 PRK08324 short chain dehydroge 57.4 43 0.00094 42.5 9.3 76 1425-1504 420-506 (681)
377 PRK06197 short chain dehydroge 57.2 47 0.001 37.2 8.6 79 1425-1504 14-103 (306)
378 PRK07576 short chain dehydroge 56.9 94 0.002 34.1 10.7 76 1426-1504 8-94 (264)
379 cd05278 FDH_like Formaldehyde 56.8 25 0.00054 39.2 6.4 95 1426-1534 167-265 (347)
380 PRK10083 putative oxidoreducta 55.8 49 0.0011 37.0 8.5 40 1426-1465 160-203 (339)
381 PRK07502 cyclohexadienyl dehyd 55.6 52 0.0011 37.6 8.8 87 1428-1533 7-97 (307)
382 TIGR02822 adh_fam_2 zinc-bindi 55.1 83 0.0018 36.0 10.3 85 1426-1535 165-253 (329)
383 PLN02586 probable cinnamyl alc 54.9 45 0.00099 38.6 8.3 90 1426-1535 183-277 (360)
384 PRK05872 short chain dehydroge 54.8 95 0.0021 34.9 10.5 76 1425-1504 7-93 (296)
385 PRK07417 arogenate dehydrogena 54.7 55 0.0012 37.0 8.7 87 1429-1537 2-91 (279)
386 PLN02545 3-hydroxybutyryl-CoA 54.6 1.2E+02 0.0025 34.6 11.2 99 1428-1539 5-122 (295)
387 KOG1201|consensus 54.6 32 0.00068 40.9 7.0 77 1424-1504 35-122 (300)
388 PRK06079 enoyl-(acyl carrier p 54.4 94 0.002 34.0 10.2 73 1426-1504 6-91 (252)
389 PF00106 adh_short: short chai 54.4 47 0.001 33.2 7.3 74 1429-1504 2-88 (167)
390 PRK07889 enoyl-(acyl carrier p 53.2 83 0.0018 34.5 9.5 73 1426-1504 6-93 (256)
391 PRK07062 short chain dehydroge 52.7 62 0.0013 35.0 8.4 78 1426-1504 7-95 (265)
392 PRK06249 2-dehydropantoate 2-r 52.7 44 0.00095 38.3 7.7 96 1426-1536 4-106 (313)
393 PF02254 TrkA_N: TrkA-N domain 52.5 65 0.0014 31.1 7.7 85 1435-1533 4-93 (116)
394 PRK05708 2-dehydropantoate 2-r 52.0 64 0.0014 37.2 8.8 96 1428-1537 3-105 (305)
395 PF03446 NAD_binding_2: NAD bi 51.9 78 0.0017 33.1 8.7 84 1429-1533 3-91 (163)
396 PRK05225 ketol-acid reductoiso 51.9 19 0.00041 45.0 4.8 90 1426-1536 35-131 (487)
397 KOG0725|consensus 51.8 1.9E+02 0.0041 33.3 12.4 79 1425-1504 6-97 (270)
398 PRK08159 enoyl-(acyl carrier p 51.0 1.6E+02 0.0034 32.9 11.4 77 1424-1504 7-96 (272)
399 cd00757 ThiF_MoeB_HesA_family 50.9 24 0.00051 39.0 5.0 33 1426-1458 20-54 (228)
400 TIGR02437 FadB fatty oxidation 50.8 67 0.0015 41.6 9.6 101 1426-1539 312-431 (714)
401 PRK06914 short chain dehydroge 50.8 70 0.0015 34.9 8.5 77 1427-1504 3-89 (280)
402 PRK05867 short chain dehydroge 50.3 67 0.0014 34.7 8.2 76 1426-1504 8-94 (253)
403 KOG0821|consensus 50.2 23 0.0005 41.0 4.9 62 1425-1488 49-111 (326)
404 PLN02662 cinnamyl-alcohol dehy 50.0 36 0.00077 37.8 6.2 75 1426-1502 3-82 (322)
405 PRK08339 short chain dehydroge 49.7 73 0.0016 35.1 8.5 77 1426-1504 7-93 (263)
406 cd05213 NAD_bind_Glutamyl_tRNA 49.5 83 0.0018 36.5 9.2 35 1425-1459 176-212 (311)
407 PF02826 2-Hacid_dh_C: D-isome 49.3 83 0.0018 33.5 8.6 85 1423-1533 32-124 (178)
408 cd08278 benzyl_alcohol_DH Benz 49.1 50 0.0011 38.1 7.4 91 1426-1534 186-283 (365)
409 PLN03154 putative allyl alcoho 48.7 75 0.0016 36.7 8.8 94 1426-1535 158-257 (348)
410 cd05279 Zn_ADH1 Liver alcohol 48.5 59 0.0013 37.5 7.9 95 1425-1534 182-283 (365)
411 cd05285 sorbitol_DH Sorbitol d 48.2 70 0.0015 36.2 8.3 95 1426-1534 162-263 (343)
412 PRK07677 short chain dehydroge 47.9 76 0.0016 34.2 8.1 74 1428-1504 2-86 (252)
413 KOG1209|consensus 47.9 79 0.0017 36.9 8.5 69 1426-1503 6-88 (289)
414 PRK06603 enoyl-(acyl carrier p 47.7 1.8E+02 0.0038 32.2 11.0 75 1426-1504 7-94 (260)
415 COG0541 Ffh Signal recognition 47.7 49 0.0011 41.2 7.3 109 1426-1539 99-224 (451)
416 PF05050 Methyltransf_21: Meth 47.6 39 0.00084 33.6 5.5 51 1432-1482 1-59 (167)
417 COG2933 Predicted SAM-dependen 47.6 41 0.0009 39.9 6.4 72 1425-1507 210-281 (358)
418 cd01065 NAD_bind_Shikimate_DH 47.5 99 0.0021 31.2 8.4 34 1426-1459 18-53 (155)
419 COG0686 Ald Alanine dehydrogen 47.5 44 0.00094 40.4 6.7 99 1423-1533 164-265 (371)
420 cd01492 Aos1_SUMO Ubiquitin ac 47.5 47 0.001 36.4 6.5 76 1426-1504 20-118 (197)
421 cd01487 E1_ThiF_like E1_ThiF_l 47.3 42 0.00091 36.0 6.0 30 1429-1458 1-32 (174)
422 TIGR03201 dearomat_had 6-hydro 47.1 64 0.0014 36.9 7.8 40 1426-1466 166-208 (349)
423 PF07991 IlvN: Acetohydroxy ac 46.9 73 0.0016 35.3 7.8 89 1426-1536 3-95 (165)
424 cd01483 E1_enzyme_family Super 46.9 46 0.001 33.7 6.0 30 1429-1458 1-32 (143)
425 PRK06124 gluconate 5-dehydroge 46.8 89 0.0019 33.6 8.4 77 1425-1504 9-96 (256)
426 PRK06172 short chain dehydroge 46.8 88 0.0019 33.6 8.4 76 1426-1504 6-92 (253)
427 cd08233 butanediol_DH_like (2R 46.5 60 0.0013 36.8 7.5 96 1426-1535 172-271 (351)
428 PRK06522 2-dehydropantoate 2-r 46.5 1.4E+02 0.0031 33.3 10.2 93 1429-1536 2-100 (304)
429 PRK11730 fadB multifunctional 46.3 90 0.002 40.5 9.7 99 1428-1539 314-431 (715)
430 cd08231 MDR_TM0436_like Hypoth 46.3 80 0.0017 36.0 8.4 96 1426-1535 177-279 (361)
431 TIGR02825 B4_12hDH leukotriene 46.2 98 0.0021 34.8 8.9 93 1426-1535 138-236 (325)
432 PRK07890 short chain dehydroge 46.0 99 0.0022 33.1 8.6 76 1426-1504 4-90 (258)
433 KOG1098|consensus 45.8 23 0.00049 45.5 4.3 34 1426-1459 44-79 (780)
434 PRK05597 molybdopterin biosynt 45.6 40 0.00086 40.0 6.1 75 1426-1503 27-125 (355)
435 KOG2912|consensus 45.5 23 0.0005 42.7 4.1 77 1430-1507 106-189 (419)
436 PRK09242 tropinone reductase; 45.2 1.1E+02 0.0023 33.2 8.7 78 1426-1504 8-96 (257)
437 cd08286 FDH_like_ADH2 formalde 45.0 1E+02 0.0022 34.8 8.9 95 1426-1534 166-264 (345)
438 PRK00094 gpsA NAD(P)H-dependen 44.9 1.1E+02 0.0025 34.5 9.2 94 1429-1536 3-105 (325)
439 PF05430 Methyltransf_30: S-ad 44.5 12 0.00027 38.6 1.6 55 1476-1533 32-87 (124)
440 PRK09291 short chain dehydroge 44.1 62 0.0013 34.6 6.7 73 1428-1503 3-80 (257)
441 TIGR02441 fa_ox_alpha_mit fatt 44.1 73 0.0016 41.5 8.5 101 1426-1539 334-453 (737)
442 COG0604 Qor NADPH:quinone redu 44.1 79 0.0017 37.1 8.1 94 1426-1535 142-240 (326)
443 cd08255 2-desacetyl-2-hydroxye 43.9 1.2E+02 0.0026 32.9 9.0 89 1426-1534 97-188 (277)
444 cd08294 leukotriene_B4_DH_like 43.8 88 0.0019 34.7 8.0 89 1426-1534 143-239 (329)
445 cd08240 6_hydroxyhexanoate_dh_ 43.8 62 0.0013 36.6 7.0 91 1426-1534 175-272 (350)
446 PRK07984 enoyl-(acyl carrier p 43.6 2.2E+02 0.0047 31.8 11.0 75 1426-1504 5-92 (262)
447 PRK08762 molybdopterin biosynt 43.5 38 0.00081 40.2 5.5 33 1426-1458 134-168 (376)
448 PLN02494 adenosylhomocysteinas 43.4 87 0.0019 39.4 8.6 85 1426-1535 253-340 (477)
449 cd08234 threonine_DH_like L-th 43.0 1.7E+02 0.0036 32.7 10.0 91 1426-1534 159-255 (334)
450 PF11312 DUF3115: Protein of u 42.7 60 0.0013 38.9 6.9 109 1426-1535 86-241 (315)
451 KOG1205|consensus 42.4 64 0.0014 38.0 7.0 78 1426-1504 11-99 (282)
452 cd08236 sugar_DH NAD(P)-depend 42.2 69 0.0015 36.0 7.0 93 1426-1535 159-257 (343)
453 PRK11154 fadJ multifunctional 42.0 1.3E+02 0.0027 39.1 10.0 101 1426-1539 308-428 (708)
454 PRK06125 short chain dehydroge 41.8 1.2E+02 0.0026 32.9 8.5 77 1426-1504 6-89 (259)
455 COG0059 IlvC Ketol-acid reduct 41.8 86 0.0019 37.9 7.9 89 1426-1536 17-109 (338)
456 PRK09186 flagellin modificatio 41.8 1.1E+02 0.0024 32.7 8.2 78 1426-1504 3-91 (256)
457 PRK08589 short chain dehydroge 41.7 1.2E+02 0.0025 33.6 8.5 76 1426-1504 5-90 (272)
458 PRK00258 aroE shikimate 5-dehy 41.7 80 0.0017 36.0 7.5 34 1426-1459 122-157 (278)
459 PRK07035 short chain dehydroge 41.6 1.2E+02 0.0026 32.6 8.4 76 1426-1504 7-93 (252)
460 PRK05690 molybdopterin biosynt 41.5 55 0.0012 36.9 6.2 33 1426-1458 31-65 (245)
461 TIGR02279 PaaC-3OHAcCoADH 3-hy 41.4 90 0.002 39.0 8.4 98 1426-1536 4-120 (503)
462 PRK08268 3-hydroxy-acyl-CoA de 41.4 1.6E+02 0.0035 36.8 10.5 95 1428-1535 8-121 (507)
463 PLN02896 cinnamyl-alcohol dehy 41.2 2.3E+02 0.005 32.6 11.0 72 1426-1502 9-85 (353)
464 PRK05876 short chain dehydroge 41.1 1.1E+02 0.0023 34.2 8.2 76 1426-1504 5-91 (275)
465 COG0373 HemA Glutamyl-tRNA red 41.0 87 0.0019 38.7 8.0 86 1424-1520 175-263 (414)
466 PRK06129 3-hydroxyacyl-CoA deh 41.0 2E+02 0.0044 33.1 10.5 37 1429-1466 4-43 (308)
467 TIGR01809 Shik-DH-AROM shikima 40.9 1.4E+02 0.003 34.5 9.2 34 1426-1459 124-159 (282)
468 cd01491 Ube1_repeat1 Ubiquitin 40.9 75 0.0016 37.3 7.2 73 1426-1503 18-112 (286)
469 PF01210 NAD_Gly3P_dh_N: NAD-d 40.8 83 0.0018 32.9 6.9 94 1429-1536 1-103 (157)
470 PRK06935 2-deoxy-D-gluconate 3 40.7 1.1E+02 0.0024 33.1 8.1 76 1426-1504 14-99 (258)
471 PF01488 Shikimate_DH: Shikima 40.7 89 0.0019 32.1 7.0 73 1424-1504 9-83 (135)
472 KOG0022|consensus 40.5 46 0.001 40.3 5.5 42 1426-1467 192-236 (375)
473 TIGR01963 PHB_DH 3-hydroxybuty 40.5 98 0.0021 32.9 7.5 73 1428-1504 2-86 (255)
474 PRK07231 fabG 3-ketoacyl-(acyl 40.5 1.2E+02 0.0027 32.1 8.2 75 1426-1504 4-89 (251)
475 TIGR00936 ahcY adenosylhomocys 40.4 98 0.0021 38.1 8.3 85 1426-1535 194-281 (406)
476 PRK12823 benD 1,6-dihydroxycyc 40.4 1.2E+02 0.0025 32.8 8.1 76 1426-1504 7-92 (260)
477 cd00755 YgdL_like Family of ac 40.1 59 0.0013 36.8 6.1 33 1426-1458 10-44 (231)
478 PRK07097 gluconate 5-dehydroge 39.9 1.3E+02 0.0028 32.9 8.4 76 1426-1504 9-95 (265)
479 PRK12549 shikimate 5-dehydroge 39.9 1.4E+02 0.003 34.6 9.0 34 1426-1459 126-161 (284)
480 PLN02427 UDP-apiose/xylose syn 39.8 49 0.0011 38.4 5.6 76 1425-1502 12-92 (386)
481 PRK09072 short chain dehydroge 39.7 1.2E+02 0.0027 32.8 8.3 75 1426-1504 4-88 (263)
482 PRK06194 hypothetical protein; 39.7 1.2E+02 0.0027 33.2 8.3 76 1426-1504 5-91 (287)
483 TIGR00518 alaDH alanine dehydr 39.5 58 0.0012 38.9 6.2 34 1425-1459 165-200 (370)
484 PF06460 NSP13: Coronavirus NS 39.4 91 0.002 37.1 7.4 92 1426-1534 61-167 (299)
485 PF11899 DUF3419: Protein of u 39.2 47 0.001 40.3 5.4 62 1472-1537 273-335 (380)
486 COG1062 AdhC Zn-dependent alco 39.2 54 0.0012 39.9 5.8 42 1426-1467 185-229 (366)
487 PF02558 ApbA: Ketopantoate re 39.1 2.8E+02 0.0062 28.0 10.1 91 1430-1535 1-100 (151)
488 TIGR00692 tdh L-threonine 3-de 39.1 1E+02 0.0023 34.8 7.8 96 1426-1535 161-260 (340)
489 KOG2539|consensus 39.0 73 0.0016 40.1 7.0 108 1425-1534 199-313 (491)
490 PTZ00082 L-lactate dehydrogena 38.8 2.1E+02 0.0046 33.8 10.5 104 1426-1537 5-129 (321)
491 PRK12749 quinate/shikimate deh 38.6 1E+02 0.0022 35.8 7.8 43 1426-1468 123-168 (288)
492 PRK14852 hypothetical protein; 38.4 74 0.0016 43.0 7.4 77 1426-1503 331-429 (989)
493 PRK07831 short chain dehydroge 38.3 1.5E+02 0.0033 32.2 8.6 77 1426-1504 16-105 (262)
494 PRK08217 fabG 3-ketoacyl-(acyl 38.3 1.5E+02 0.0032 31.5 8.3 76 1426-1504 4-90 (253)
495 PRK12921 2-dehydropantoate 2-r 38.2 99 0.0022 34.7 7.5 91 1429-1535 2-101 (305)
496 PRK06196 oxidoreductase; Provi 38.2 1E+02 0.0022 34.9 7.6 72 1426-1504 25-107 (315)
497 PRK08213 gluconate 5-dehydroge 38.2 1.5E+02 0.0032 32.2 8.5 77 1425-1504 10-97 (259)
498 PRK05476 S-adenosyl-L-homocyst 37.4 1.1E+02 0.0024 37.9 8.1 84 1426-1534 211-297 (425)
499 PLN02214 cinnamoyl-CoA reducta 37.1 1.4E+02 0.003 34.5 8.6 74 1426-1503 9-88 (342)
500 PF11899 DUF3419: Protein of u 37.1 68 0.0015 39.0 6.3 34 1425-1459 34-67 (380)
No 1
>KOG1499|consensus
Probab=100.00 E-value=7.8e-42 Score=381.22 Aligned_cols=269 Identities=43% Similarity=0.713 Sum_probs=248.5
Q ss_pred cCccchhhHHHHhhcchhhHHHhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCE
Q psy1769 1372 IDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKH 1451 (1662)
Q Consensus 1372 gEDe~SDEqYfDSYGeLsIHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKK 1451 (1662)
.++...++.||..|++.++|++||+|.+|+.+|+.+|.++.+++ .+++|||||||+|.+++++|++|+++
T Consensus 16 ~~d~~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf----------~dK~VlDVGcGtGILS~F~akAGA~~ 85 (346)
T KOG1499|consen 16 PKDMTSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLF----------KDKTVLDVGCGTGILSMFAAKAGARK 85 (346)
T ss_pred ccccchhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhc----------CCCEEEEcCCCccHHHHHHHHhCcce
Confidence 44567889999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred EEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeE
Q psy1769 1452 VISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGL 1531 (1662)
Q Consensus 1452 VTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGr 1531 (1662)
|+|||.|.+++.|++.+..|++.+.|+++.+.++++. || .+++|+||++|+++++..|.+++.++.++.++|+|||.
T Consensus 86 V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 86 VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE-LP--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe-cC--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence 9999999999999999999999999999999999997 88 68999999999999999999999999999999999999
Q ss_pred EEeecCceeEeecccc-chhhhhcccccccCCCchhhhhcccccccccc----CCCCcccCCCeEEEEEeCCCCCCCCCc
Q psy1769 1532 ILPDRAELYCVAANDT-MAATKYSFWHDVYGFDMEPIQRDLPNIAKFHP----VPGDKVMTDSILIHSIDLNTCSVDDTS 1606 (1662)
Q Consensus 1532 LIPSsATLYLAPIEDe-y~dErIafWenVYGFDMS~Lrr~LpdaA~eEP----VDpekLLSEP~eIfdFDFnTidvEDLs 1606 (1662)
++|..++++++++++. +....+.||.++|||||+++.+ .+..+| +++..++++||.+.++|+.+...+++.
T Consensus 163 i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~----~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~~i~d~~ 238 (346)
T KOG1499|consen 163 IYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKK----IAIKEPLVDVVDPEQLLTEPCLIKEFDLYTVKIEDLS 238 (346)
T ss_pred EccccceEEEEeccCchhhhhhcCccccccccchhhhhh----hhhcccceeccChhHhcccceeeEEeeeeeeecccee
Confidence 9999999999999999 7788899999999999999999 445555 899999999999999999999999999
Q ss_pred eEEEEEEEeeeCeeEEEEEEEEEEEEcCCcccccCccccccccCCCCCCCCccccC
Q psy1769 1607 FNLEFAMVAKEGGFVNAFVLYFKVILKLILRVEPHKFQVLAQSRKNFQPGTSDVQA 1662 (1662)
Q Consensus 1607 fSv~FEfkIkRdGt~HGFAfWFDLdLDgdIStSPspl~VLaqS~~pWqPaTHW~QA 1662 (1662)
++.+|++.+.+.+.||||++|||+.|+.+..- ...++ ++.|..|.|||+|.
T Consensus 239 F~s~f~l~v~r~~~i~g~v~yFDv~F~~~~~~---~~~~f--ST~P~~p~THWKQt 289 (346)
T KOG1499|consen 239 FTSPFKLKVTRNGYLHAFVAYFDVEFTGCHGK---KRLGF--STSPSSPYTHWKQT 289 (346)
T ss_pred eccceEEEEccCceEEEEEEEEEEeeccCCCC---Cccee--ecCCCCCCceeeeE
Confidence 99999999999999999999999999987421 11122 56667788999994
No 2
>KOG1500|consensus
Probab=100.00 E-value=1.2e-32 Score=305.63 Aligned_cols=265 Identities=29% Similarity=0.479 Sum_probs=226.4
Q ss_pred ccchhhHHHHhhcchhhHHHhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCEEE
Q psy1769 1374 DMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVI 1453 (1662)
Q Consensus 1374 De~SDEqYfDSYGeLsIHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKKVT 1453 (1662)
++.+...||..|+.+.....|+.|.+|+..|.++|.++...| .++.|||||||+|++++++|++|+++|+
T Consensus 135 EesSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF----------~~kiVlDVGaGSGILS~FAaqAGA~~vY 204 (517)
T KOG1500|consen 135 EESSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDF----------QDKIVLDVGAGSGILSFFAAQAGAKKVY 204 (517)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccccc----------CCcEEEEecCCccHHHHHHHHhCcceEE
Confidence 355677899999999999999999999999999999877666 8999999999999999999999999999
Q ss_pred EEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1454 SVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1454 GVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+||.|+|++.|++.++.|.+.++|.++.|.+++++ || +++|+||++++++++..|.+++..+.++ ++|+|.|.++
T Consensus 205 AvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-LP---Ek~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 205 AVEASEMAQYARKLVASNNLADRITVIPGKIEDIE-LP---EKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred EEehhHHHHHHHHHHhcCCccceEEEccCcccccc-Cc---hhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 99999999999999999999999999999999998 98 8999999999999999999999999887 9999999999
Q ss_pred eecCceeEeecccc--c--hhhhhcccc--cccCCCchhhhhcccccccccc-C---CCCcccCCCeEEEEEeCCCCCCC
Q psy1769 1534 PDRAELYCVAANDT--M--AATKYSFWH--DVYGFDMEPIQRDLPNIAKFHP-V---PGDKVMTDSILIHSIDLNTCSVD 1603 (1662)
Q Consensus 1534 PSsATLYLAPIEDe--y--~dErIafWe--nVYGFDMS~Lrr~LpdaA~eEP-V---DpekLLSEP~eIfdFDFnTidvE 1603 (1662)
|....++++|+.++ | ...+..||. ++||.|++++.....+--+..| + |+.. |-.+...+.+||....++
T Consensus 280 PT~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Ri-lmA~sv~h~~dF~~~kEe 358 (517)
T KOG1500|consen 280 PTVGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRI-LMAKSVFHVIDFLNMKEE 358 (517)
T ss_pred CcccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccce-eeccchHhhhhhhhcccc
Confidence 99999999999998 2 234556886 4899999988773333334455 3 4444 444455789999999988
Q ss_pred CC-ceEEEEEEEeeeCeeEEEEEEEEEEEEcCCcccccCccccccccCCCCCCCCcccc
Q psy1769 1604 DT-SFNLEFAMVAKEGGFVNAFVLYFKVILKLILRVEPHKFQVLAQSRKNFQPGTSDVQ 1661 (1662)
Q Consensus 1604 DL-sfSv~FEfkIkRdGt~HGFAfWFDLdLDgdIStSPspl~VLaqS~~pWqPaTHW~Q 1661 (1662)
++ .+..+++|.+...|+|||++||||+.|++..- .-|+ ++.|=.|-|||-|
T Consensus 359 dlh~i~iPlkF~~~~~g~iHGLAfWFDV~F~GS~~--~~wl-----sTap~apltHwyq 410 (517)
T KOG1500|consen 359 DLHEIDIPLKFHALQCGRIHGLAFWFDVLFDGSTV--QVWL-----STAPTAPLTHWYQ 410 (517)
T ss_pred hheeecccceehhhhhcceeeeeeEEEEEeccceE--EEcc-----CCCCCCCccccee
Confidence 87 46778899999999999999999999999742 1221 3334457899987
No 3
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.95 E-value=1.5e-27 Score=275.75 Aligned_cols=249 Identities=27% Similarity=0.353 Sum_probs=182.7
Q ss_pred hhHHHhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhC-----CCEEEEEechH-HHH
Q psy1769 1389 KTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAG-----AKHVISVDCSV-ITQ 1462 (1662)
Q Consensus 1389 sIHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAG-----AKKVTGVDISp-MLE 1462 (1662)
..++.|.+|..++..|.+||..+.... .........+.+|||||||+|.|++++++++ +.+|+|||.++ ++.
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~al~D~--~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~ 228 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEEALKDR--VRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVV 228 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHHHHHHH--HTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHH
T ss_pred ccHhhHhcCHHHHHHHHHHHHHHHHhh--hhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHH
Confidence 356778899999999999998543222 2222111246799999999999999999885 67999999998 455
Q ss_pred HHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEe
Q psy1769 1463 LTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCV 1542 (1662)
Q Consensus 1463 iARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLA 1542 (1662)
.+++++..+++.++|+++.+|++++. +| +++|+||+++|+.+++.|-+ .++|.++.|+|||||++||..+++|++
T Consensus 229 ~l~~~v~~n~w~~~V~vi~~d~r~v~-lp---ekvDIIVSElLGsfg~nEl~-pE~Lda~~rfLkp~Gi~IP~~~t~yla 303 (448)
T PF05185_consen 229 TLQKRVNANGWGDKVTVIHGDMREVE-LP---EKVDIIVSELLGSFGDNELS-PECLDAADRFLKPDGIMIPSSYTSYLA 303 (448)
T ss_dssp HHHHHHHHTTTTTTEEEEES-TTTSC-HS---S-EEEEEE---BTTBTTTSH-HHHHHHGGGGEEEEEEEESSEEEEEEE
T ss_pred HHHHHHHhcCCCCeEEEEeCcccCCC-CC---CceeEEEEeccCCccccccC-HHHHHHHHhhcCCCCEEeCcchhhEEE
Confidence 55666688999999999999999998 77 79999999999999987744 456789999999999999999999999
Q ss_pred ecccc-chhhhhcccccccCCCchhhhhccccccccccCCCCcccCCC-eEEEEEeCCCCC---CCCCceEEEEEEEeee
Q psy1769 1543 AANDT-MAATKYSFWHDVYGFDMEPIQRDLPNIAKFHPVPGDKVMTDS-ILIHSIDLNTCS---VDDTSFNLEFAMVAKE 1617 (1662)
Q Consensus 1543 PIEDe-y~dErIafWenVYGFDMS~Lrr~LpdaA~eEPVDpekLLSEP-~eIfdFDFnTid---vEDLsfSv~FEfkIkR 1617 (1662)
|+.+. +..+... |.....|+...+.. +.....|+++ ..+++|++.... ..+..+...++|++.+
T Consensus 304 Piss~~l~~~~~~-~~~~~~~e~pyvv~----------~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~ 372 (448)
T PF05185_consen 304 PISSPKLYQEVRN-WWNPSSFETPYVVH----------LSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKR 372 (448)
T ss_dssp EEE-HHHHHHHHH-HHGHHHHTSSEEE------------GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSS
T ss_pred EeeCHHHHHHHHh-hcchhhcCCcEEEE----------ccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCC
Confidence 99998 3333322 22222333222222 3445567777 889999987766 4567788999999999
Q ss_pred CeeEEEEEEEEEEEEcCCcccccCccccccccCCCCCCCCcccc
Q psy1769 1618 GGFVNAFVLYFKVILKLILRVEPHKFQVLAQSRKNFQPGTSDVQ 1661 (1662)
Q Consensus 1618 dGt~HGFAfWFDLdLDgdIStSPspl~VLaqS~~pWqPaTHW~Q 1661 (1662)
+|++|||++||++.|.+++.++++|.. ....+.+||.|
T Consensus 373 ~g~vhGfagwFd~~Ly~~V~LSt~P~~------~~s~~~tsW~q 410 (448)
T PF05185_consen 373 DGVVHGFAGWFDAVLYGDVVLSTSPSS------AHSPPMTSWFQ 410 (448)
T ss_dssp SEEEEEEEEEEEEEEECSEEEESSTTS---------TT--TTEE
T ss_pred CcEEEEEEEEEEEEeeCCeeeecCCCc------CCCCCCCeEeE
Confidence 999999999999999999988888832 23457899988
No 4
>KOG1501|consensus
Probab=99.68 E-value=7.8e-17 Score=184.79 Aligned_cols=238 Identities=20% Similarity=0.239 Sum_probs=176.1
Q ss_pred hHHHhhcChhhHHHHHHHHHhcccccccccCCCCCC--CCCEEEEECCCCcHHHHHHHHhCCCEEEEEech-HHHHHHHH
Q psy1769 1390 THQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLL--KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQE 1466 (1662)
Q Consensus 1390 IHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dl--pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDIS-pMLEiARE 1466 (1662)
.+.+|++|..|+..|+..|+...... .+.. .-..|||||+|||+++++++++|+..|+|+|.- ||.+.|++
T Consensus 34 sy~DMl~D~dRNiky~~gi~~tIte~------kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 34 SYLDMLNDSDRNIKYRLGIEKTITEP------KHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARK 107 (636)
T ss_pred hHHHHhhcccccHHHHHHHHHHhccc------ceeccCceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHH
Confidence 44679999999999999998443222 1221 223589999999999999999999999999998 69999999
Q ss_pred HHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeeccc
Q psy1769 1467 VVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAND 1546 (1662)
Q Consensus 1467 NAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIED 1546 (1662)
....+|+.++|.++....+++...+ ..+.|+++.+.+..-+..++.+..+-++..++|+++...+|.++++|++++++
T Consensus 108 I~~kng~SdkI~vInkrStev~vg~--~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES 185 (636)
T KOG1501|consen 108 IMHKNGMSDKINVINKRSTEVKVGG--SSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVES 185 (636)
T ss_pred HHhcCCCccceeeeccccceeeecC--cchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehh
Confidence 9999999999999999998886233 35689999998888888888999999999999999999999999999999998
Q ss_pred cchhh--hhcc--cccccCCCchh--hhhccccc------ccccc-CCCCcccCCCeEEEEEeCCCCCCCCCceEEEEEE
Q psy1769 1547 TMAAT--KYSF--WHDVYGFDMEP--IQRDLPNI------AKFHP-VPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAM 1613 (1662)
Q Consensus 1547 ey~dE--rIaf--WenVYGFDMS~--Lrr~Lpda------A~eEP-VDpekLLSEP~eIfdFDFnTidvEDLsfSv~FEf 1613 (1662)
.+... .+.- -....|..+.+ +.. +... ...+. ....++|+++..++.+||.............+.+
T Consensus 186 ~~l~~~ndl~~~~~~ts~gv~~~p~~les-c~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~s~s~~~~~r~~ 264 (636)
T KOG1501|consen 186 TFLCNLNDLRNNEAKTSDGVRLVPPGLES-CFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWIDSNSEIEELRPP 264 (636)
T ss_pred hhhhhhhccccccccccCCcccCCCcccc-CCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhhcchhhhhhcCc
Confidence 83221 1100 00112222111 111 1000 01111 2345789999999999997443322222224456
Q ss_pred EeeeCeeEEEEEEEEEEEEcCCc
Q psy1769 1614 VAKEGGFVNAFVLYFKVILKLIL 1636 (1662)
Q Consensus 1614 kIkRdGt~HGFAfWFDLdLDgdI 1636 (1662)
.+...|++.+++.|||+.||...
T Consensus 265 va~~Sg~~~~~l~wwdi~mD~~g 287 (636)
T KOG1501|consen 265 VAVHSGPLRSNLLWWDISMDQFG 287 (636)
T ss_pred ccccccchhheeeeeeeeeccCc
Confidence 77889999999999999999963
No 5
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=1.1e-14 Score=134.51 Aligned_cols=107 Identities=29% Similarity=0.382 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccc-cccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRM-EDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDA-EDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.+++.+++. ...+|+|+|+++ |++.|++++...+...+|+++++|+ .... . .+.||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~---~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-F---LEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-T---SSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-c---CCCCCEEEE
Confidence 4679999999999999999993 445899999997 9999999997788889999999999 3332 2 367999999
Q ss_pred cC-chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NW-MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~-VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.. ..+.+........+++.+.++|+|||+|++..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 77 44433333556777888999999999999754
No 6
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1e-13 Score=150.95 Aligned_cols=119 Identities=21% Similarity=0.339 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEE
Q psy1769 1401 IGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVIT 1478 (1662)
Q Consensus 1401 nEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVE 1478 (1662)
...|++++....... ++.+|||||||||.+++.+++. |..+|+|+|+|+ |++.|++++...++.+ |+
T Consensus 36 ~~~Wr~~~i~~~~~~----------~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~ 104 (238)
T COG2226 36 HRLWRRALISLLGIK----------PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VE 104 (238)
T ss_pred hHHHHHHHHHhhCCC----------CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eE
Confidence 356766665332222 7899999999999999999997 557999999997 9999999999888776 99
Q ss_pred EEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1479 FIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
|+++|+++ |||++++||+|.+...+..+. .++.+|.++.|+|||||++++..
T Consensus 105 fv~~dAe~---LPf~D~sFD~vt~~fglrnv~---d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 105 FVVGDAEN---LPFPDNSFDAVTISFGLRNVT---DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred EEEechhh---CCCCCCccCEEEeeehhhcCC---CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999 457799999999977666553 35667788899999999877443
No 7
>KOG0822|consensus
Probab=99.51 E-value=3.1e-14 Score=166.72 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=171.2
Q ss_pred hHHHhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHh-----CCCEEEEEechH-HHHH
Q psy1769 1390 THQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA-----GAKHVISVDCSV-ITQL 1463 (1662)
Q Consensus 1390 IHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARA-----GAKKVTGVDISp-MLEi 1463 (1662)
.++-+.+|.+.+..|.+||... +...+...... ...+|+-+|+|.|-+.....++ ..-++++||.++ ++..
T Consensus 334 TYetFEkD~VKY~~Yq~Ai~~A--L~Drvpd~~a~-~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivt 410 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAILKA--LLDRVPDESAK-TTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVT 410 (649)
T ss_pred hhhhhhccchHHHHHHHHHHHH--HHhhCcccccC-ceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhh
Confidence 5566778999999999999843 33111111111 1457889999999876666554 123799999997 4433
Q ss_pred HHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEee
Q psy1769 1464 TQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVA 1543 (1662)
Q Consensus 1464 ARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAP 1543 (1662)
.. +.....|+++|+++..|++.+. -| .++.|++|+++++.+.+.|-..+ .|..+.++|||+|+.||...+-|+.|
T Consensus 411 L~-~~n~~~W~~~Vtii~~DMR~w~-ap--~eq~DI~VSELLGSFGDNELSPE-CLDG~q~fLkpdgIsIP~sYtSyi~P 485 (649)
T KOG0822|consen 411 LQ-NRNFECWDNRVTIISSDMRKWN-AP--REQADIIVSELLGSFGDNELSPE-CLDGAQKFLKPDGISIPSSYTSYIAP 485 (649)
T ss_pred hh-hhchhhhcCeeEEEeccccccC-Cc--hhhccchHHHhhccccCccCCHH-HHHHHHhhcCCCceEccchhhhhhcc
Confidence 33 3455678899999999999986 33 58999999999999987775444 45777899999999999999999999
Q ss_pred ccccchhhhhcccccccCCCchhhhhccccccccccCCCCcccCCCeEEEEEeCCCCC-CCCCceEEEEEEEeeeCeeEE
Q psy1769 1544 ANDTMAATKYSFWHDVYGFDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCS-VDDTSFNLEFAMVAKEGGFVN 1622 (1662)
Q Consensus 1544 IEDey~dErIafWenVYGFDMS~Lrr~LpdaA~eEPVDpekLLSEP~eIfdFDFnTid-vEDLsfSv~FEfkIkRdGt~H 1622 (1662)
+........+....+...|++..+.. +.....|+++..+++|.....+ .-+..+...++|++.++|.+|
T Consensus 486 ImS~~l~q~v~a~~~~~~fe~~YVV~----------l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lH 555 (649)
T KOG0822|consen 486 IMSPKLYQEVKATNDPNAFEAPYVVL----------LHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLH 555 (649)
T ss_pred cccHHHHHHHHhcCCccccccceEEE----------ecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEe
Confidence 99882222222222222333333332 4556678888999999876553 233455677899999999999
Q ss_pred EEEEEEEEEEcCCcccccCccc
Q psy1769 1623 AFVLYFKVILKLILRVEPHKFQ 1644 (1662)
Q Consensus 1623 GFAfWFDLdLDgdIStSPspl~ 1644 (1662)
||++|||+.|..+|.++..|..
T Consensus 556 GFaGYFd~~LYkdI~LSI~P~T 577 (649)
T KOG0822|consen 556 GFAGYFDAVLYKDIFLSIEPNT 577 (649)
T ss_pred ecchhhhhhhhheeeEeeccCC
Confidence 9999999999999988877743
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.45 E-value=5.1e-13 Score=117.92 Aligned_cols=94 Identities=26% Similarity=0.386 Sum_probs=76.1
Q ss_pred EEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhh
Q psy1769 1431 LEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVL 1509 (1662)
Q Consensus 1431 LDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~L 1509 (1662)
||||||+|..+..+++.+..+|+++|+++ +++.+++..... .+.++.+|++++ |+.+++||+|++..+.+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSS---SS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhC---ccccccccccccccceeec
Confidence 89999999999999999666999999996 999999886543 466999999985 4558999999998877776
Q ss_pred ChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1510 YLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1510 d~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.....++.++.|+|||||++++
T Consensus 74 ---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 ---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---cCHHHHHHHHHHHcCcCeEEeC
Confidence 3456677888999999999984
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.45 E-value=2.9e-13 Score=145.86 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||||.++..+++. + ..+|+|+|+|+ |++.|++++...++. +|+++++|+++++ +++++||+|++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp---~~d~sfD~v~~ 122 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLP---FPDNSFDAVTC 122 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB-----S-TT-EEEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhc---CCCCceeEEEH
Confidence 7889999999999999999886 3 35899999997 999999999988775 7999999999954 56899999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
....+.+.. +...+.++.|+|||||++++.+
T Consensus 123 ~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 123 SFGLRNFPD---RERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp ES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhHHhhCC---HHHHHHHHHHHcCCCeEEEEee
Confidence 776665532 3456688899999999987443
No 10
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.44 E-value=6.8e-13 Score=149.34 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++.+|||||||+|.++..+++.|+ +|+|||+++ |++.|++++...+...+|++++++++++. +.+++||+|++.
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~---~~~~~FD~Vi~~ 205 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA---DEGRKFDAVLSL 205 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh---hccCCCCEEEEh
Confidence 4678999999999999999999866 899999996 99999988776665567999999998854 446799999995
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
.+.+++.. ...++.++.++|||||.+++...
T Consensus 206 ~vLeHv~d---~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 206 EVIEHVAN---PAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred hHHHhcCC---HHHHHHHHHHHcCCCcEEEEEEC
Confidence 55554432 24566777899999999997753
No 11
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.39 E-value=3.1e-12 Score=126.43 Aligned_cols=106 Identities=28% Similarity=0.389 Sum_probs=85.9
Q ss_pred CCCEEEEECCCCcHHHHHHHH-h-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE-A-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR-A-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+.+|||||||+|.++..+++ . ...+|+|+|+++ |++.|++.++..++. +++|+++|++++... +. +.||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~-~~-~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQE-LE-EKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGC-SS-TTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccc-cC-CCeeEEEE
Confidence 578999999999999999994 3 245899999997 999999999999987 899999999995421 22 79999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
..+.+.+. ....++..+.++|+++|++++...
T Consensus 80 ~~~l~~~~---~~~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 80 NGVLHHFP---DPEKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp ESTGGGTS---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCchhhcc---CHHHHHHHHHHHcCCCcEEEEEEC
Confidence 87666553 334566778899999999986553
No 12
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=2e-12 Score=134.63 Aligned_cols=101 Identities=22% Similarity=0.289 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.+++.+++.|. +|+|+|+|+ |++.|++.+...++. ++++.++|+.++. ++ +.||+|++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~---~~fD~I~~~~ 103 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT-FD---GEYDFILSTV 103 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC-cC---CCcCEEEEec
Confidence 568999999999999999999876 899999997 999999998888874 5889999988764 33 6799999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.|++.. ..+..++..+.++|+|||+++
T Consensus 104 ~~~~~~~-~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 104 VLMFLEA-KTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred chhhCCH-HHHHHHHHHHHHHcCCCcEEE
Confidence 7777643 356677889999999999965
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.39 E-value=6.5e-13 Score=145.10 Aligned_cols=108 Identities=26% Similarity=0.336 Sum_probs=91.0
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE-
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS- 1502 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS- 1502 (1662)
.++.+|||||||-|.++..+|+.|+ .|+|+|+++ +++.|+..+.+.++. +.+.+..++++. ...++||+|+|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~---~~~~~FDvV~cm 131 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLA---SAGGQFDVVTCM 131 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHH---hcCCCccEEEEh
Confidence 3789999999999999999999996 899999997 999999999998875 889999999876 22379999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCV 1542 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLA 1542 (1662)
+++.|+.+++. ++.++.++|||||.++++.......
T Consensus 132 EVlEHv~dp~~----~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 132 EVLEHVPDPES----FLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred hHHHccCCHHH----HHHHHHHHcCCCcEEEEeccccCHH
Confidence 77777765443 5677789999999999887664433
No 14
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.39 E-value=6.1e-12 Score=136.58 Aligned_cols=105 Identities=21% Similarity=0.191 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHh--cCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEE--NDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAre--NGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
++.+|||||||+|.++..+++. + ..+|+|+|+|+ |++.|+++... .....+++++++|+++++ +++++||+|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp---~~~~sfD~V 149 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP---FDDCYFDAI 149 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC---CCCCCEeEE
Confidence 6789999999999999998886 3 35899999997 99999877531 222347999999998854 557899999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++....+.+. ....++.++.|+|||||++++..
T Consensus 150 ~~~~~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 150 TMGYGLRNVV---DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred EEecccccCC---CHHHHHHHHHHHcCcCcEEEEEE
Confidence 9977666653 24556788899999999988654
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.38 E-value=1.9e-12 Score=145.23 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=86.9
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++.+|||||||+|.++..+++....+|+|||+++ |++.|++++...++.++++|+++|+.++ ++.+++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~---~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ---PFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC---CCCCCCccEEEEC
Confidence 36789999999999999999986334899999997 9999999998888878899999999875 4557899999995
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
...+++.. ...++.++.|+|||||+|++..
T Consensus 194 ~~~~h~~d---~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 194 ESGEHMPD---KRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CchhccCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 55444432 3456677889999999998654
No 16
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=4e-12 Score=132.16 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=83.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.|. +|+|+|+++ |++.|++++..+++. +.+...|+.... ++ ++||+|++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~-~~---~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAA-LN---EDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcc-cc---CCCCEEEEec
Confidence 567999999999999999999876 899999997 999999988887774 778888876543 33 5799999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.+++.. ..+..++..+.++|+|||+++
T Consensus 103 ~~~~~~~-~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 103 VFMFLQA-GRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ccccCCH-HHHHHHHHHHHHHhCCCcEEE
Confidence 7777644 356677889999999999965
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.36 E-value=9.7e-12 Score=129.67 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++. + ..+|+|+|+++ +++.|++++...++ .+++++++|++++. +..++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~---~~~~~fD~V~~ 120 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP---FDDNSFDYVTI 120 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC---CCCCCccEEEE
Confidence 6789999999999999999886 3 35899999996 99999999887776 47999999998854 33679999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
....+.+.. ...++.++.++|+|||++++..
T Consensus 121 ~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLRNVPD---YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccccCCC---HHHHHHHHHHHcCcCeEEEEEE
Confidence 765554432 3456677789999999998543
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.36 E-value=4.8e-12 Score=135.48 Aligned_cols=104 Identities=26% Similarity=0.256 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.+.+|||||||+|.++..+++.|. +|+|+|+++ |++.|++++...++..+++++++|+.++. ++..++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~--~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA--QHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh--hhcCCCCCEEEehh
Confidence 567999999999999999999865 899999996 99999999998888778999999998864 22357899999977
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.+++.. ...++..+.++|+|||+|++.
T Consensus 121 vl~~~~~---~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVAD---PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhCC---HHHHHHHHHHHcCCCeEEEEE
Confidence 7666532 235667778999999999743
No 19
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.34 E-value=7.2e-12 Score=138.16 Aligned_cols=107 Identities=29% Similarity=0.422 Sum_probs=81.9
Q ss_pred CCCCCCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCcee
Q psy1769 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1421 kA~dlpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
.+...++.+|||||||.|.+++.+|+. |+ +|+||.+|+ .++.|++.++..|+.+++++..+|..++. .+||
T Consensus 57 ~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~------~~fD 129 (273)
T PF02353_consen 57 KLGLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP------GKFD 129 (273)
T ss_dssp TTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---------S-S
T ss_pred HhCCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC------CCCC
Confidence 344558999999999999999999998 77 899999996 99999999999999999999999998864 4899
Q ss_pred EEEE-cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1499 IIVS-NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1499 VVIS-E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.||+ +.+.|+. ...+..++..+.++|+|||++++..
T Consensus 130 ~IvSi~~~Ehvg--~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 130 RIVSIEMFEHVG--RKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp EEEEESEGGGTC--GGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred EEEEEechhhcC--hhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 9999 4455543 2346677788999999999998654
No 20
>PTZ00357 methyltransferase; Provisional
Probab=99.33 E-value=1.2e-11 Score=148.14 Aligned_cols=242 Identities=12% Similarity=0.126 Sum_probs=154.7
Q ss_pred hhHHHhhcChhhHHHHHHHHHhccccccccc---------------------CCC-C---CCCCCEEEEECCCCcHHHHH
Q psy1769 1389 KTHQTTYKDKQLIGCFHDSIINNSHLFKVRK---------------------PNS-H---LLKDKIVLEVGCGMGLLSLF 1443 (1662)
Q Consensus 1389 sIHEEMLND~vRnEAYrEAIernkeLfR~LL---------------------QkA-~---dlpGKRVLDIGCGTGlLSL~ 1443 (1662)
..++-+.+|.+.++.|.+||..... .|.. ... . .....+|+-+|+|-|-|...
T Consensus 640 ~TYEVFEKDpVKYdqYE~AI~kAL~--Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdr 717 (1072)
T PTZ00357 640 GVYEVFERDARKYRQYREAVFHYVR--DWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDE 717 (1072)
T ss_pred hhHHHHcCCcHHHHHHHHHHHHHHH--HhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHH
Confidence 3566788899999999999985431 1110 000 0 01124689999999987666
Q ss_pred HHHh----CC-CEEEEEech-HHHHHHHHHH-HhcCC-------CCcEEEEEccccccccCC---------CCCCceeEE
Q psy1769 1444 CAEA----GA-KHVISVDCS-VITQLTQEVV-EENDC-------SDVITVICRRMEDIDRLP---------HGIENVDII 1500 (1662)
Q Consensus 1444 LARA----GA-KKVTGVDIS-pMLEiARENA-reNGL-------eDRVEFIqGDAEDLesLP---------FEDESFDVV 1500 (1662)
+.++ |. -+|++||.+ +.+...+.+. ....| .++|+++..|++.+. .+ ..-+++|+|
T Consensus 718 aLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~-~pe~~~s~~~P~~~gKaDIV 796 (1072)
T PTZ00357 718 CLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA-TAAENGSLTLPADFGLCDLI 796 (1072)
T ss_pred HHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc-ccccccccccccccccccee
Confidence 6554 32 379999999 4333333332 33345 346999999999985 32 112479999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccC----Ce-------EEEeecCceeEeecccc-chhhhhcccccccCCCchhhh
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKP----HG-------LILPDRAELYCVAANDT-MAATKYSFWHDVYGFDMEPIQ 1568 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKP----GG-------rLIPSsATLYLAPIEDe-y~dErIafWenVYGFDMS~Lr 1568 (1662)
|+++++.+.+.|-..+ .|+.+.+.||+ +| +.||..++-|+.||... ++.+.... ...|+-.....
T Consensus 797 VSELLGSFGDNELSPE-CLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~--~~~gltvP~p~ 873 (1072)
T PTZ00357 797 VSELLGSLGDNELSPE-CLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEA--AVKGLTVPPPG 873 (1072)
T ss_pred hHhhhcccccccCCHH-HHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHh--hhcccccCCcc
Confidence 9999999988775444 44777788875 55 58999999999999988 33221110 01111111000
Q ss_pred hcccc-cccccc----CCCCcccCCCeEEEEEeCCCCCC-----------------CCCceEEEEEEEeeeCeeEEEEEE
Q psy1769 1569 RDLPN-IAKFHP----VPGDKVMTDSILIHSIDLNTCSV-----------------DDTSFNLEFAMVAKEGGFVNAFVL 1626 (1662)
Q Consensus 1569 r~Lpd-aA~eEP----VDpekLLSEP~eIfdFDFnTidv-----------------EDLsfSv~FEfkIkRdGt~HGFAf 1626 (1662)
..... ..+..+ +.....|+.|..+++|....... .+..+...+.|++..+++||||++
T Consensus 874 c~~~haa~fet~YVV~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAG 953 (1072)
T PTZ00357 874 CHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAG 953 (1072)
T ss_pred ccccchhhcccceEEEecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeee
Confidence 00000 001111 33344578888899998754431 123567788999999999999999
Q ss_pred EEEEEEcCCc
Q psy1769 1627 YFKVILKLIL 1636 (1662)
Q Consensus 1627 WFDLdLDgdI 1636 (1662)
||++.|.+++
T Consensus 954 YFdAvLYkDV 963 (1072)
T PTZ00357 954 YFSAVLYQSA 963 (1072)
T ss_pred EEEEEeecCC
Confidence 9999999994
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=8.1e-12 Score=133.90 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHh---CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA---GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA---GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
++.+|||||||+|.++..+++. ...+|+|+|+|+ |++.|++++...+...+++++++|+.++. + ..+|+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~D~vv 130 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I----ENASMVV 130 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-C----CCCCEEe
Confidence 6689999999999999888873 335899999997 99999999988887778999999998854 2 3589999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..+.|++..+ ....++..+.++|+|||.|++..
T Consensus 131 ~~~~l~~l~~~-~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPS-ERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHH-HHHHHHHHHHHhcCCCCEEEEEE
Confidence 98888887644 35677899999999999998764
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.32 E-value=7.2e-12 Score=117.04 Aligned_cols=108 Identities=29% Similarity=0.354 Sum_probs=86.5
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
+.+|||+|||+|.+++.+++.+..+++|+|+++ .++.|+.++...++..+++++++|+.++. -....++||+|++++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP-EPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH-HTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch-hhccCceeEEEEECCC
Confidence 358999999999999999999867999999997 89999999999999889999999998874 2234689999999876
Q ss_pred hhhhC-----hHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1506 GHVLY-----LDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1506 gH~Ld-----~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..... .......+++.+.++|+|||.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 54321 1124567788889999999998743
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=2.4e-11 Score=123.82 Aligned_cols=104 Identities=30% Similarity=0.399 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCC-EEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAK-HVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAK-KVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|||||||+|.+++.+++.+.. +|+++|+++ +++.|++++..+++.+ ++++..|+.+.. + .++||+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~--~--~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL--P--DGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC--C--TTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc--c--ccceeEEEEc
Confidence 5678999999999999999998654 799999997 9999999999999987 999999987642 3 5899999999
Q ss_pred CchhhhC--hHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1504 WMGHVLY--LDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1504 ~VgH~Ld--~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+..+... ....+..++....++|+|||.+++
T Consensus 106 PP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 106 PPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp --SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 8765443 224677888888999999999863
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.28 E-value=1.9e-11 Score=133.78 Aligned_cols=101 Identities=27% Similarity=0.318 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.+++.+++.|. +|+|+|+|+ +++.|++++...++ ++++...|+.... + .++||+|++..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~-~---~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS-I---QEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc-c---cCCccEEEEcc
Confidence 456999999999999999999876 899999997 99999999988887 5888888887754 3 37899999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+++++..+ .+..++..+.++|+|||++++
T Consensus 193 vl~~l~~~-~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 193 VLMFLNRE-RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred hhhhCCHH-HHHHHHHHHHHhcCCCcEEEE
Confidence 88877543 556778999999999999663
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.28 E-value=3.1e-11 Score=127.82 Aligned_cols=105 Identities=16% Similarity=0.342 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh---CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA---GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA---GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
++.+|||||||+|.++..+++. ...+|+|+|+++ |++.|++++...+...+++++++|+.++. + ..+|+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~----~~~d~v~ 127 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-I----KNASMVI 127 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-C----CCCCEEe
Confidence 5679999999999999999885 245899999996 99999999887666667999999998864 3 3589999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..+.|++..+. ...++..+.++|+|||.|++..
T Consensus 128 ~~~~l~~~~~~~-~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 128 LNFTLQFLPPED-RIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred eecchhhCCHHH-HHHHHHHHHHhcCCCeEEEEee
Confidence 988777775443 5567788999999999998764
No 26
>KOG1270|consensus
Probab=99.28 E-value=4.3e-12 Score=140.26 Aligned_cols=102 Identities=25% Similarity=0.351 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCC-----cEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSD-----VITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeD-----RVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.+++|||||||+|+++..||+.|+ .|+|||+++ |++.|++......... ++++.+.+++.+. +.||+
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~------~~fDa 161 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT------GKFDA 161 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc------cccce
Confidence 468899999999999999999987 899999997 9999999865554432 4788888888864 56999
Q ss_pred EEE-cCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1500 IVS-NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1500 VIS-E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
|+| +.+.|+-+. +.++..+.++|+|+|.+|+....
T Consensus 162 VvcsevleHV~dp----~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 162 VVCSEVLEHVKDP----QEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeHHHHHHHhCH----HHHHHHHHHHhCCCCceEeeehh
Confidence 999 666666554 44555557999999999977643
No 27
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.28 E-value=1.1e-11 Score=138.68 Aligned_cols=97 Identities=34% Similarity=0.510 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++++|||||||+|+|++.+++.|+++|+|+|+++ +++.|++++..|++.+++.+. ...+ .+ .++||+|+++.
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~---~~--~~~~dlvvANI 233 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED---LV--EGKFDLVVANI 233 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC---TC--CS-EEEEEEES
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc---cc--cccCCEEEECC
Confidence 6789999999999999999999999999999997 899999999999999877663 2222 22 37999999998
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...+ ..++..+.++|+|||++|++
T Consensus 234 ~~~vL------~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 234 LADVL------LELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp -HHHH------HHHHHHCHHHEEEEEEEEEE
T ss_pred CHHHH------HHHHHHHHHhhCCCCEEEEc
Confidence 76655 34556667999999999954
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=2.5e-11 Score=129.10 Aligned_cols=101 Identities=31% Similarity=0.395 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||.|..+++||+.|. .|+|+|+|+ .++.+++.+...++. |+..+.|+.+.. ++ +.||+|++..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~-~~---~~yD~I~st~ 102 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD-FP---EEYDFIVSTV 102 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--T---TTEEEEEEES
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc-cc---CCcCEEEEEE
Confidence 678999999999999999999999 799999997 889999888888885 999999998876 54 6899999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+.+++..+ .+..++..+...|+|||++++
T Consensus 103 v~~fL~~~-~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 103 VFMFLQRE-LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp SGGGS-GG-GHHHHHHHHHHTEEEEEEEEE
T ss_pred EeccCCHH-HHHHHHHHHHhhcCCcEEEEE
Confidence 88888655 567788999999999999875
No 29
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.26 E-value=2.3e-11 Score=136.47 Aligned_cols=105 Identities=22% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
..+++|||||||+|.++..++..|+..|+|+|+|+ |+..++......+...+|.|+.++++++. + .+.||+|+|.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp---~-~~~FD~V~s~ 196 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP---A-LKAFDTVFSM 196 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC---C-cCCcCEEEEC
Confidence 36889999999999999999999888899999997 77655443333333457999999998864 3 4789999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.++.. ....++..++++|+|||.|++..
T Consensus 197 ~vl~H~~---dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 197 GVLYHRR---SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ChhhccC---CHHHHHHHHHHhcCCCcEEEEEE
Confidence 5555442 23456677889999999999763
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.26 E-value=1.9e-11 Score=113.49 Aligned_cols=95 Identities=24% Similarity=0.381 Sum_probs=76.6
Q ss_pred EEEECCCCcHHHHHHHHhC----CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE-c
Q psy1769 1430 VLEVGCGMGLLSLFCAEAG----AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS-N 1503 (1662)
Q Consensus 1430 VLDIGCGTGlLSL~LARAG----AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS-E 1503 (1662)
|||||||+|..+..+++.. ..+++|+|+++ |++.|++.....+. +++++++|+.++. +..++||+|++ .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~---~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP---FSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH---HHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc---ccCCCeeEEEEcC
Confidence 7999999999999999873 26999999997 99999999987666 6899999999865 34579999999 4
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCe
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHG 1530 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGG 1530 (1662)
.+.+++ ....+..+++.+.++|+|||
T Consensus 76 ~~~~~~-~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHL-SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGS-SHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCC-CHHHHHHHHHHHHHHhCCCC
Confidence 545555 45567788899999999998
No 31
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.26 E-value=5.7e-11 Score=124.86 Aligned_cols=98 Identities=28% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.+++. +..+|+++|+++ |++.|+++++.+++.+ ++++++|+.++. . .++||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~---~-~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFG---Q-EEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCC---C-CCCccEEEEc
Confidence 3789999999999999999874 456899999997 9999999999999865 999999998864 2 4789999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+. .++.++..+.++|+|||++++.
T Consensus 120 ~~~-------~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 120 AVA-------SLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred ccc-------CHHHHHHHHHHhcCCCeEEEEE
Confidence 531 2345667778999999999854
No 32
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.24 E-value=1.4e-10 Score=108.06 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.++..+++. +..+|+++|+++ +++.|++++...++. +++++.+|+.... +...++||+|++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~D~v~~~ 95 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEAL--EDSLPEPDRVFIG 95 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccC--hhhcCCCCEEEEC
Confidence 5679999999999999999987 346899999997 999999998887775 6899999877532 1123689999995
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.... .+..++..+.++|+|||.|++..
T Consensus 96 ~~~~------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 96 GSGG------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred Ccch------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 4321 23467788889999999998654
No 33
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=6.8e-11 Score=122.96 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||||||+|.+++.++..+ ..+|+|+|+++ |++.|+++++.+++. +++++++|++++. . .++||+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~---~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-H---EEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-c---cCCccEEEeh
Confidence 57899999999999999988764 45899999997 999999999888875 5999999998853 2 3689999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+. . +..++..+.++|+|||++++.
T Consensus 117 ~~~---~----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 117 ALA---S----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhh---C----HHHHHHHHHHhcCCCCEEEEE
Confidence 521 1 234556667999999999844
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=5e-11 Score=133.12 Aligned_cols=108 Identities=25% Similarity=0.314 Sum_probs=91.5
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
...++++|||||||.|.+++.+|+. |+ +|+|+++|+ +.+.|+++++..|++++|+++..|..++. +.||-|
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~------e~fDrI 141 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE------EPFDRI 141 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc------ccccee
Confidence 4459999999999999999999998 45 899999996 99999999999999999999999999865 569999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
|+.-++.++.. .-.+.++..+.++|+|||+++....+
T Consensus 142 vSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 142 VSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred eehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEec
Confidence 99555555533 34567778889999999999866543
No 35
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.5e-11 Score=136.32 Aligned_cols=101 Identities=30% Similarity=0.443 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++++|||+|||+|.|++.+++.|+++|+|+|+++ +++.|+++++.|++...+.....+..+.. . .++||+||++.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~--~--~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP--E--NGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc--c--cCcccEEEehh
Confidence 7899999999999999999999999999999998 89999999999998753433344443322 1 25899999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+...+ ..+...+.++|+|||++|++.
T Consensus 238 LA~vl------~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 238 LAEVL------VELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred hHHHH------HHHHHHHHHHcCCCceEEEEe
Confidence 65544 456677789999999999554
No 36
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.23 E-value=3.4e-11 Score=128.82 Aligned_cols=95 Identities=20% Similarity=0.251 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.++..+++.. ..+|+|+|+|+ |++.|++. +++++++|++++. + .++||+|++.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~--~--~~~fD~v~~~ 96 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK--P--KPDTDVVVSN 96 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC--C--CCCceEEEEe
Confidence 67899999999999999999872 34899999997 99988752 3789999998753 2 4689999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+.|++.. ...++..+.++|+|||++++.
T Consensus 97 ~~l~~~~d---~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 97 AALQWVPE---HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred hhhhhCCC---HHHHHHHHHHhCCCCcEEEEE
Confidence 87777642 355667788999999999865
No 37
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.23 E-value=3.5e-11 Score=127.69 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
...+|||||||+|.++..+++.+. +|+++|+|+ |++.|+++.. .+.++++|++.++ +.+++||+|++..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~---~~~~~fD~V~s~~ 111 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA------ADHYLAGDIESLP---LATATFDLAWSNL 111 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCc---CCCCcEEEEEECc
Confidence 567899999999999999988765 899999997 9999887642 2467899998754 4467999999987
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..+... .+..++.++.++|+|||.+++..
T Consensus 112 ~l~~~~---d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 112 AVQWCG---NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred hhhhcC---CHHHHHHHHHHHcCCCeEEEEEe
Confidence 666542 24566788889999999998653
No 38
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.22 E-value=8.4e-11 Score=129.42 Aligned_cols=99 Identities=30% Similarity=0.466 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++..++.+...+.... ..++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-----~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-----IEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-----cCCCceEEEEec
Confidence 5789999999999999999998888999999997 9999999999999887788877764332 146899999986
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.. .+..++..+.++|+|||+|+++
T Consensus 234 ~~~------~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 234 LAE------VIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred CHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence 543 2345667778999999999854
No 39
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.22 E-value=6.3e-11 Score=128.92 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++....+|+|+|+++ |++.|++++.. ..++.++++|+.+.. +.+++||+|++..
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~---~~~~~FD~V~s~~ 125 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKD---FPENTFDMIYSRD 125 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCC---CCCCCeEEEEEhh
Confidence 7789999999999999988875334899999997 99999987643 357999999998643 4468999999954
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.+++..+ ....++..+.++|||||+|++..
T Consensus 126 ~l~h~~~~-d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 126 AILHLSYA-DKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred hHHhCCHH-HHHHHHHHHHHHcCCCcEEEEEE
Confidence 33333222 35567788899999999999754
No 40
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.21 E-value=8.3e-11 Score=132.43 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++++|||||||+|.++..++..|+..|+|+|+|+ |+..++...+......++.++.++++++. . ...||+|+|.
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp---~-~~~FD~V~s~ 195 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH---E-LYAFDTVFSM 195 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC---C-CCCcCEEEEc
Confidence 37889999999999999999988888899999997 87665433222222346889999988864 2 2589999997
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.++.. ....++.+++++|+|||.|++..
T Consensus 196 gvL~H~~---dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 196 GVLYHRK---SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred chhhccC---CHHHHHHHHHHhcCCCCEEEEEE
Confidence 6555553 23446678889999999999764
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.21 E-value=9.1e-11 Score=126.15 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=85.1
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-CC-CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-GA-KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-GA-KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++.+|||||||+|.+++.+++. +. .+|+|+|+++ |++.|++++...++. +++++.+|++++. +.++.||+|+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~---~~~~~fD~Vi 151 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALP---VADNSVDVII 151 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCC---CCCCceeEEE
Confidence 37889999999999988877775 43 4799999997 999999998888774 7999999998754 4467999999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++.+.++... ...++..+.++|+|||+|++..
T Consensus 152 ~~~v~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 152 SNCVINLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred EcCcccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9877665532 2456677789999999998754
No 42
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.21 E-value=7.8e-11 Score=122.43 Aligned_cols=102 Identities=20% Similarity=0.204 Sum_probs=83.5
Q ss_pred CEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
++|||||||+|.++..+++.. ..+|+|+|+|+ +++.|++++...++..++.++.+|+.... ++ ++||+|++..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~---~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP---DTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC---CCCCEeehHHH
Confidence 379999999999999998863 35899999997 99999999998899889999999987643 33 58999999655
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.++... ...++..+.++|+|||++++..
T Consensus 77 l~~~~~---~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 77 IHHIKD---KMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHhCCC---HHHHHHHHHHHcCCCCEEEEEE
Confidence 554432 4567788889999999998654
No 43
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.21 E-value=8.5e-11 Score=125.05 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.++..+++. +..+|+|+|+++ |++.|++++ .++.|+.+|+.++. + ..+||+|++.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~--~--~~~fD~v~~~ 100 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQ--P--PQALDLIFAN 100 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccC--C--CCCccEEEEc
Confidence 6789999999999999999986 346899999997 999998763 24889999998753 2 3689999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+.+++.. ...++..+.++|+|||.+++.
T Consensus 101 ~~l~~~~d---~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 101 ASLQWLPD---HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred cChhhCCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 87776642 345667788999999999865
No 44
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.19 E-value=2e-10 Score=117.00 Aligned_cols=102 Identities=21% Similarity=0.186 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+|||+|.+++.+++.+. +|+++|+++ +++.|++++..++. +++++.+|+.+.. .++||+|++++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-----~~~fD~Vi~n~ 90 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-----RGKFDVILFNP 90 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-----CCcccEEEECC
Confidence 567899999999999999999876 899999997 99999999988775 4889999987642 25899999987
Q ss_pred chhhhCh------------------HHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYL------------------DSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~------------------EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..+.... ...+..++.++.++|+|||.+++.
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~ 139 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLI 139 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEE
Confidence 6543321 223567788889999999998854
No 45
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.16 E-value=4.3e-10 Score=115.82 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..++..+ ..+|+++|+++ +++.|++++...++..++.++.+|+.++. +..+.||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP---FPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---CCCCCccEEEE
Confidence 56899999999999999999886 37999999997 99999998877666667999999998754 33578999998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..+.+... .+..++..+.++|+|||++++..
T Consensus 128 ~~~l~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 128 AFGLRNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ecccccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 66555442 24556778889999999988543
No 46
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.16 E-value=1.4e-10 Score=112.13 Aligned_cols=94 Identities=24% Similarity=0.271 Sum_probs=71.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||.|.++..+++.|. +|+|+|+++ +++. ..+.....+..... ...++||+|+|..
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-----------RNVVFDNFDAQDPP---FPDGSFDLIICND 86 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-----------TTSEEEEEECHTHH---CHSSSEEEEEEES
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-----------hhhhhhhhhhhhhh---ccccchhhHhhHH
Confidence 788999999999999999999888 999999997 6666 11333333333322 2258999999977
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+++++. ....++..+.++|+|||++++...
T Consensus 87 ~l~~~~---d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 87 VLEHLP---DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp SGGGSS---HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred HHhhcc---cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 777775 256677888999999999986553
No 47
>PRK08317 hypothetical protein; Provisional
Probab=99.15 E-value=5e-10 Score=114.29 Aligned_cols=105 Identities=19% Similarity=0.203 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++.. ..+|+|+|+++ +++.|+++.. ....++.++.+|+..+. +..+.||+|++
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~---~~~~~~D~v~~ 93 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP---FPDGSFDAVRS 93 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC---CCCCCceEEEE
Confidence 67899999999999999998862 45899999997 8898888733 23357999999988754 33578999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
..+.+++.. ...++..+.++|+|||.+++....
T Consensus 94 ~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 94 DRVLQHLED---PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred echhhccCC---HHHHHHHHHHHhcCCcEEEEEecC
Confidence 765555432 345667778999999999876643
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.15 E-value=3.9e-10 Score=117.91 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..++..+. +|+|+|+++ |++.|++++...+...++.|.++|+..+ + ++||+|++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~---~~fD~ii~~~ 127 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---C---GEFDIVVCMD 127 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---C---CCcCEEEEhh
Confidence 678999999999999999998865 899999997 9999999988777666799999999874 3 6899999955
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+.+++..+ .+..++..+.+++++++++.+
T Consensus 128 ~l~~~~~~-~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 128 VLIHYPAS-DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHHhCCHH-HHHHHHHHHHHHhCCCEEEEE
Confidence 54444333 355667788888887776654
No 49
>KOG1540|consensus
Probab=99.14 E-value=4.7e-10 Score=124.20 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=85.0
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHh-CC------CEEEEEechH-HHHHHHHHHHhcCCCCc--EEEEEccccccccCCC
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEA-GA------KHVISVDCSV-ITQLTQEVVEENDCSDV--ITVICRRMEDIDRLPH 1492 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARA-GA------KKVTGVDISp-MLEiARENAreNGLeDR--VEFIqGDAEDLesLPF 1492 (1662)
....+++|||++||||-+++.+.+. +. ++|+.+|+++ |+..+++++.+.++... +.|+++|++++ ||
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L---pF 173 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL---PF 173 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC---CC
Confidence 3447799999999999999999986 23 6899999997 99999999887777655 99999999995 57
Q ss_pred CCCceeEEEEcC-chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1493 GIENVDIIVSNW-MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1493 EDESFDVVISE~-VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
++.+||+..+.. +..+.+ ++..+.+.+|+|||||+|+
T Consensus 174 dd~s~D~yTiafGIRN~th----~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNVTH----IQKALREAYRVLKPGGRFS 211 (296)
T ss_pred CCCcceeEEEecceecCCC----HHHHHHHHHHhcCCCcEEE
Confidence 799999987744 555554 3445566789999999986
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.14 E-value=4.4e-10 Score=116.79 Aligned_cols=103 Identities=23% Similarity=0.278 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||+|||+|.+++.+++. + ..+|+++|+++ +++.|+++++.+++.+++.++.+|+.++. +...+.||+|++
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l--~~~~~~~D~V~~ 117 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL--FTINEKFDRIFI 117 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH--hhcCCCCCEEEE
Confidence 7889999999999999999875 3 45899999997 99999999999887678999999997742 212368999998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.... ..+..++..+.++|+|||++++..
T Consensus 118 ~~~~------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGGS------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCc------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 5311 123456677789999999998533
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=2.4e-10 Score=132.16 Aligned_cols=102 Identities=25% Similarity=0.323 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. +...+++|+++|+.... ++ +++||+|+|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~-~~--~~~fD~I~s~~ 340 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT-YP--DNSFDVIYSRD 340 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC-CC--CCCEEEEEECC
Confidence 6789999999999999988886334899999996 9999988764 44457999999998754 43 57899999954
Q ss_pred -chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 -MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 -VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.|+.. ...++..+.++|+|||+|++..
T Consensus 341 ~l~h~~d----~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 341 TILHIQD----KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred cccccCC----HHHHHHHHHHHcCCCeEEEEEE
Confidence 444433 3456677789999999998764
No 52
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=128.03 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=89.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|||||||+|.+++++|+. ...+|+|||+.+ +++.|+++++.++|+++|+++++|+.++. -.....+||+|||+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~-~~~~~~~fD~Ii~N 122 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL-KALVFASFDLIICN 122 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh-hcccccccCEEEeC
Confidence 4679999999999999999998 546899999997 99999999999999999999999999976 33233579999999
Q ss_pred CchhhhChH---------------HHHHHHHHHHHhcccCCeEEEe
Q psy1769 1504 WMGHVLYLD---------------SLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1504 ~VgH~Ld~E---------------dmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+..+-.... ..++.++....++||+||.+.+
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 866543221 1267788888899999999873
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.13 E-value=3.3e-10 Score=130.56 Aligned_cols=105 Identities=19% Similarity=0.177 Sum_probs=83.7
Q ss_pred CCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCC--CcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCS--DVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLe--DRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
..+|||||||+|.+++.+++.+ ..+|+++|+|+ +++.|+++++.++.. .+++++..|+... ++ ..+||+|+|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~~--~~~fDlIls 304 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--VE--PFRFNAVLC 304 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--CC--CCCEEEEEE
Confidence 4689999999999999999874 45899999997 999999999888753 3689999888653 22 358999999
Q ss_pred cCchhhh--ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVL--YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~L--d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
++.+|.. ........++..+.++|+|||.|++.
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 9877643 12334567778888999999998844
No 54
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.13 E-value=2.1e-10 Score=120.20 Aligned_cols=108 Identities=20% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccc-cccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRM-EDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDA-EDLesLPFEDESFDVVIS 1502 (1662)
.+.+|||||||+|.++..+++. +..+|+|||+++ |++.|++++..+++ .++.++++|+ +.+. ..+..+.||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~-~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL-DMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH-HHcCccccceEEE
Confidence 5679999999999999999886 345899999997 99999999988887 4699999999 5543 1133578999998
Q ss_pred cCchhhhC-----hHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLY-----LDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld-----~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
........ .......++..+.++|+|||+|++.
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 64322111 0011355678888999999999854
No 55
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.13 E-value=1.7e-11 Score=112.60 Aligned_cols=97 Identities=27% Similarity=0.301 Sum_probs=60.5
Q ss_pred EEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhh
Q psy1769 1431 LEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHV 1508 (1662)
Q Consensus 1431 LDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~ 1508 (1662)
||||||+|.++..+++. ...+|+|+|+|+ |++.|++++...... .+..+..+..+.. .....++||+|++..+.|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLF-DYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS----CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChh-hcccccccceehhhhhHhh
Confidence 79999999999999887 345899999997 998898888876643 3444444444432 1111259999999777777
Q ss_pred hChHHHHHHHHHHHHhcccCCeEE
Q psy1769 1509 LYLDSLINAVVYARDRFLKPHGLI 1532 (1662)
Q Consensus 1509 Ld~EdmLEaLLrALrRLLKPGGrL 1532 (1662)
+ ..+..++..+.++|+|||+|
T Consensus 79 l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 L---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-HHHHHHHHTTT-TSS-EE
T ss_pred h---hhHHHHHHHHHHHcCCCCCC
Confidence 7 34567788999999999986
No 56
>PRK14967 putative methyltransferase; Provisional
Probab=99.12 E-value=5.1e-10 Score=118.22 Aligned_cols=104 Identities=22% Similarity=0.185 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+|||+|.+++.+++.++.+|+++|+++ +++.|++++..+++ ++.++++|+.+. ++ .++||+|++++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~--~~--~~~fD~Vi~np 109 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA--VE--FRPFDVVVSNP 109 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh--cc--CCCeeEEEECC
Confidence 5689999999999999999998777999999997 99999999988776 488999998764 23 46899999986
Q ss_pred chhhh------------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVL------------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~L------------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..... .....+..++..+.++|++||++++.
T Consensus 110 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 110 PYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred CCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 43211 11123566778888999999999853
No 57
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.12 E-value=3.3e-10 Score=122.01 Aligned_cols=93 Identities=30% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.+++.+++.|+.+|+|+|+++ +++.|++++..+++...+.+..+ +.+||+|+++.
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~-----------~~~fD~Vvani 187 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG-----------DLKADVIVANI 187 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC-----------CCCcCEEEEcC
Confidence 6789999999999999999988887899999997 99999999998887544443222 12699999976
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
... .+..++..+.++|+|||++++.
T Consensus 188 ~~~------~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 188 LAN------PLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cHH------HHHHHHHHHHHhcCCCcEEEEE
Confidence 533 2345667778999999999965
No 58
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.11 E-value=9.6e-10 Score=112.18 Aligned_cols=102 Identities=24% Similarity=0.263 Sum_probs=81.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCC--CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGA--KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGA--KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||+|||+|.++..+++.+. .+++++|+++ +++.+++++. ...++.++.+|+.++. +..++||+|++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~---~~~~~~D~i~~ 112 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP---FEDNSFDAVTI 112 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC---CCCCcEEEEEE
Confidence 678999999999999999998754 4899999996 8888888765 3457899999998854 33578999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
....+... .+..+++.+.++|+|||++++..
T Consensus 113 ~~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 113 AFGLRNVT---DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred eeeeCCcc---cHHHHHHHHHHHcCCCcEEEEEE
Confidence 66555442 24567788889999999998543
No 59
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.11 E-value=1e-09 Score=112.50 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.+++.+ ..+|+++|+++ +++.|++++..+++. +++++.+|+... ++ ++||+|++.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~--~~---~~~D~v~~~ 104 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE--LP---GKADAIFIG 104 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh--cC---cCCCEEEEC
Confidence 67899999999999999999874 35899999997 999999999888774 699999987532 33 689999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
..... +..++..+.++|+|||++++
T Consensus 105 ~~~~~------~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 105 GSGGN------LTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCccC------HHHHHHHHHHhcCCCeEEEE
Confidence 53222 34456677899999999985
No 60
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.10 E-value=4.1e-10 Score=115.49 Aligned_cols=100 Identities=24% Similarity=0.329 Sum_probs=80.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||||||+|.++..+++.+ ..+|+++|+++ +++.+++.+. .++.++.+|+.+.. +.+++||+|++.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~---~~~~~fD~vi~~ 105 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP---LEDSSFDLIVSN 105 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC---CCCCceeEEEEh
Confidence 45789999999999999999875 34689999997 8888877643 36889999998854 346789999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.+++. ....++..+.++|+|||.+++..
T Consensus 106 ~~l~~~~---~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 106 LALQWCD---DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred hhhhhcc---CHHHHHHHHHHHcCCCcEEEEEe
Confidence 7776663 24556788889999999998653
No 61
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=5.2e-10 Score=117.35 Aligned_cols=98 Identities=22% Similarity=0.215 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|++++...++.++++++.+|+.+.. + ...+||+|++
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~--~-~~~~fD~Ii~ 148 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL--E-KHAPFDAIIV 148 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC--c-cCCCccEEEE
Confidence 6789999999999999998886 2 35899999997 99999999998888778999999998742 2 2468999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
......+ . ..+.+.|+|||+|++.
T Consensus 149 ~~~~~~~-----~----~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 149 TAAASTI-----P----SALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCcchh-----h----HHHHHhcCcCcEEEEE
Confidence 6543322 1 2345889999998753
No 62
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.10 E-value=4.9e-10 Score=129.58 Aligned_cols=106 Identities=25% Similarity=0.364 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++. ..+|+|+|+++ |++.+++. ++...++.++++|+.... +++..++||+|++..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~ 111 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPD-LNISDGSVDLIFSNW 111 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccc-cCCCCCCEEEEehhh
Confidence 5679999999999999999998 45899999997 88877653 223357999999997543 455568999999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+.+++..+ .+..++..+.++|+|||+|++...
T Consensus 112 ~l~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 112 LLMYLSDK-EVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred hHHhCCHH-HHHHHHHHHHHhcCCCeEEEEEec
Confidence 88877543 456777888999999999988653
No 63
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.08 E-value=1.4e-09 Score=112.64 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.+.+|||||||+|.++..+++.++ +|+++|+++ +++.+++++...+.. ++.+..+|+.++. .. ..++||+|++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-~~-~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLA-EK-GAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh-cC-CCCCccEEEehh
Confidence 578999999999999999998766 699999997 999999988776653 5889999988764 21 136899999966
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.++.. ....++..+.++|++||.+++..
T Consensus 121 ~l~~~~---~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 121 VLEHVP---DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHHhCC---CHHHHHHHHHHhcCCCcEEEEEe
Confidence 555443 23456677889999999988654
No 64
>PRK14968 putative methyltransferase; Provisional
Probab=99.08 E-value=1.4e-09 Score=108.84 Aligned_cols=105 Identities=27% Similarity=0.321 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCc-EEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDV-ITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDR-VEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||+|||+|.++..+++.+ .+|+|+|+++ +++.|++++..+++.++ +.++.+|+.+. ++ ...||+|+++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~--~~~~d~vi~n 97 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FR--GDKFDVILFN 97 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--cc--ccCceEEEEC
Confidence 67799999999999999999985 5899999997 99999999988887544 88999988663 22 3589999997
Q ss_pred Cchhhh------------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVL------------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~L------------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...... .....+..++.++.++|+|||.+++.
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 543210 11234566788888999999998754
No 65
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.07 E-value=6.6e-10 Score=135.84 Aligned_cols=110 Identities=21% Similarity=0.141 Sum_probs=88.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC-CcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS-DVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe-DRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++++|||||||+|.+++.++..|+++|++||+|+ +++.|++++..+++. ++++++++|+.++. ....++||+||++
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l--~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL--KEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH--HHcCCCcCEEEEC
Confidence 5789999999999999999999888999999997 999999999999986 68999999997752 1113689999998
Q ss_pred Cchhh--------hChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1504 WMGHV--------LYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1504 ~VgH~--------Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+.... .........++..+.++|+|||.|+++.+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 75322 11223455666777899999999987654
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.07 E-value=4.5e-10 Score=120.59 Aligned_cols=116 Identities=22% Similarity=0.228 Sum_probs=85.6
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
.++||+|||.|.++..||.. +.+++++|+++ +++.|++++.. + .+|+|+++++.++. | .++||+||+.-++
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~-~~V~~~~~dvp~~~--P--~~~FDLIV~SEVl 116 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--L-PHVEWIQADVPEFW--P--EGRFDLIVLSEVL 116 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-------SS-EEEEEEES-G
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--C-CCeEEEECcCCCCC--C--CCCeeEEEEehHh
Confidence 57999999999999999998 67999999997 99999998764 3 36999999998863 4 5899999998889
Q ss_pred hhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeeccccchhhhhcccccccCC
Q psy1769 1507 HVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATKYSFWHDVYGF 1562 (1662)
Q Consensus 1507 H~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIEDey~dErIafWenVYGF 1562 (1662)
|++.....+..++..+...|+|||.||+... .......|...+|-
T Consensus 117 YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~-----------rd~~c~~wgh~~ga 161 (201)
T PF05401_consen 117 YYLDDAEDLRAALDRLVAALAPGGHLVFGHA-----------RDANCRRWGHAAGA 161 (201)
T ss_dssp GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE------------HHHHHHTT-S--H
T ss_pred HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-----------cCCcccccCcccch
Confidence 9998767788888999999999999996442 12234468776663
No 67
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.06 E-value=1.8e-09 Score=118.80 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=86.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
+..+|||||||+|.++..+++.. ..+++++|..++++.|++++...++.++|+++.+|+.+.. +| .+|+|++..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~----~~D~v~~~~ 223 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP----EADAVLFCR 223 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC-CC----CCCEEEeEh
Confidence 56899999999999999999873 3589999996799999999999999889999999997644 44 369998866
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.|.... .....++..+.+.|+|||+|++.+
T Consensus 224 ~lh~~~~-~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 224 ILYSANE-QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhcCCh-HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6666543 344567788899999999998665
No 68
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.06 E-value=1.4e-09 Score=120.16 Aligned_cols=108 Identities=24% Similarity=0.254 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||+|||+|.+++.+++.. ..+|+|+|+|+ +++.|++++..+++.+++.++++|+.+. ++ .++||+||++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~--~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LP--GRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cC--CCCccEEEEC
Confidence 45689999999999999999863 34899999997 9999999999999877899999998653 33 3589999997
Q ss_pred Cchhh------h----------------ChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1504 WMGHV------L----------------YLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1504 ~VgH~------L----------------d~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+...- + +.-..+..++..+.++|+|||++++...
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 53210 0 0112456778888899999999986543
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.06 E-value=1.5e-09 Score=131.83 Aligned_cols=108 Identities=22% Similarity=0.293 Sum_probs=84.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.++..+++. +..+|+|+|+|+ |++.|++++...+ .++.++++|+.++. ..+++++||+|++.
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp-~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLS-SSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCc-cccCCCCEEEEEEc
Confidence 6789999999999998888875 345899999997 9999998876544 35889999988753 12456899999998
Q ss_pred CchhhhC----------hHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLY----------LDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld----------~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.|.+. ....+..++.++.++|||||++++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7666431 12355677888999999999998754
No 70
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.05 E-value=1.2e-09 Score=126.32 Aligned_cols=116 Identities=19% Similarity=0.150 Sum_probs=89.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC-CcEEEEEccccccc-cCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS-DVITVICRRMEDID-RLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe-DRVEFIqGDAEDLe-sLPFEDESFDVVIS 1502 (1662)
++++|||+|||+|.+++.++..|+.+|++||+++ +++.|++++..|++. .+++++++|+.++. .+....++||+||+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999999988887888999999997 999999999999986 57999999998752 11111358999999
Q ss_pred cCchhhhChH------HHHHHHHHHHHhcccCCeEEEeecCceeE
Q psy1769 1503 NWMGHVLYLD------SLINAVVYARDRFLKPHGLILPDRAELYC 1541 (1662)
Q Consensus 1503 E~VgH~Ld~E------dmLEaLLrALrRLLKPGGrLIPSsATLYL 1541 (1662)
++........ ..+..++....++|+|||.|+.+.|.-++
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 8765332211 12344455667999999999977665443
No 71
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.05 E-value=1.1e-09 Score=117.53 Aligned_cols=137 Identities=20% Similarity=0.328 Sum_probs=115.4
Q ss_pred hhHHHhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHH
Q psy1769 1389 KTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEV 1467 (1662)
Q Consensus 1389 sIHEEMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiAREN 1467 (1662)
.||..+|.|..|...|..+|.+. ....+.|+|+|+|.+++.+|.+ +++|+|||.++ ..++|.++
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~v--------------a~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN 73 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEV--------------AEDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEEN 73 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHH--------------hhhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhc
Confidence 57888999999999999999853 2357899999999999999998 88999999998 78999999
Q ss_pred HHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeecccc
Q psy1769 1468 VEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT 1547 (1662)
Q Consensus 1468 AreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIEDe 1547 (1662)
+.-+|+ .+++++.+|+.+.. | +..|+|+|+++...+..|.....+ .++..+|+-++.+||.....-+.|+.-.
T Consensus 74 ~~v~g~-~n~evv~gDA~~y~---f--e~ADvvicEmlDTaLi~E~qVpV~-n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 74 LHVPGD-VNWEVVVGDARDYD---F--ENADVVICEMLDTALIEEKQVPVI-NAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred CCCCCC-cceEEEeccccccc---c--cccceeHHHHhhHHhhcccccHHH-HHHHHHhhcCCccccHHHhhccCccccC
Confidence 877776 57999999999976 3 578999999998888777665544 5555799999999999877777776644
No 72
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.05 E-value=7.4e-10 Score=115.19 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|||||||+|.++..+|+. +...|+|+|+++ +++.|++++...++. +++++++|+.++....+..+.+|.|++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 4568999999999999999986 345899999996 999999999888885 7999999998753111224589999986
Q ss_pred CchhhhCh-----HHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYL-----DSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~-----EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
........ .-....++..+.++|+|||.|++..
T Consensus 95 ~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 95 FPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54332111 0112456777889999999998543
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.1e-09 Score=115.21 Aligned_cols=97 Identities=21% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++.. ..+|+++|+++ +++.|++++...++ ++++++++|+.+.. + ....||+|++
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~--~-~~~~fD~Ii~ 152 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGW--E-PLAPYDRIYV 152 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCC--c-ccCCCCEEEE
Confidence 77899999999999999999873 24699999997 99999999999888 47999999997642 2 2368999998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
......+ . ..+.+.|+|||+|++.
T Consensus 153 ~~~~~~~-----~----~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 153 TAAGPKI-----P----EALIDQLKEGGILVMP 176 (215)
T ss_pred cCCcccc-----c----HHHHHhcCcCcEEEEE
Confidence 6432222 2 2345789999998854
No 74
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.03 E-value=1.4e-09 Score=119.09 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCcH----HHHHHHHhC------CCEEEEEechH-HHHHHHHHHH----hcC------------------
Q psy1769 1426 KDKIVLEVGCGMGL----LSLFCAEAG------AKHVISVDCSV-ITQLTQEVVE----END------------------ 1472 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl----LSL~LARAG------AKKVTGVDISp-MLEiARENAr----eNG------------------ 1472 (1662)
.+.+|||+|||+|. +++.+++.+ ..+|+|+|+|+ |++.|++.+- ..+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 666676642 24899999997 9999987531 001
Q ss_pred ----CCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1473 ----CSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1473 ----LeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..+|.|.++|+.+.. . ..++||+|+|..+.+++..+ ....++..+.++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~--~~~~fD~I~crnvl~yf~~~-~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-P--PLGDFDLIFCRNVLIYFDEP-TQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-C--ccCCCCEEEechhHHhCCHH-HHHHHHHHHHHHhCCCeEEEEEC
Confidence 2246899999998864 3 35789999997777777543 45567788899999999999654
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=2.1e-09 Score=120.22 Aligned_cols=104 Identities=24% Similarity=0.211 Sum_probs=85.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+|||+|.+++.++..++ .|+|+|+++ |+..|+++++..++.+ +.++++|+.++. + ..+.||+|++++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~-~--~~~~~D~Iv~dP 256 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLP-L--SSESVDAIATDP 256 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCC-c--ccCCCCEEEECC
Confidence 678999999999999998888765 899999997 9999999999988876 899999999864 3 357899999986
Q ss_pred chhhh------ChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVL------YLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~L------d~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
..... ....+...++..+.++|+|||++++
T Consensus 257 Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 257 PYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred CCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 43221 1224567788888999999999874
No 76
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.02 E-value=2.8e-09 Score=111.81 Aligned_cols=103 Identities=26% Similarity=0.287 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.++ +|+++|+++ +++.|++++...+. .+.++..++.++. ....++||+|++..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA--AEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh--hhcCCCccEEEEhh
Confidence 678999999999999999998865 799999996 88999988876665 4788888887753 11247899999965
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.++... ...++..+.++|+|||.+++..
T Consensus 123 ~l~~~~~---~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 123 MLEHVPD---PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred HhhccCC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 4444422 3456677789999999998654
No 77
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.02 E-value=2.7e-09 Score=110.78 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.+. .|+|+|+++ |++.|++++...++..++.+..+|+... .+.||+|++..
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~~~fD~v~~~~ 135 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------LGRFDTVVCLD 135 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc------cCCcCEEEEcc
Confidence 577999999999999999999876 699999997 9999999988877766899999985432 36899999966
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.+++..+ .+..++..+.++++.++++.
T Consensus 136 ~l~~~~~~-~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 136 VLIHYPQE-DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhhcCCHH-HHHHHHHHHHhhcCCeEEEE
Confidence 55444333 45566677777665444443
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.01 E-value=1.6e-09 Score=123.21 Aligned_cols=101 Identities=22% Similarity=0.207 Sum_probs=81.6
Q ss_pred CCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
..+|||||||+|.++..+++.+ ..+|+++|+++ +++.|+++++.+++. .+++..|+... + .++||+||+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~---~~~fDlIvsNP 269 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--I---KGRFDMIISNP 269 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--c---CCCccEEEECC
Confidence 4589999999999999999874 35899999997 999999999998875 56777777542 2 37899999998
Q ss_pred chhhhC--hHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVLY--LDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~Ld--~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.+|... .......++..+.++|+|||.+++
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 776432 124567788888999999999974
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=2.2e-09 Score=120.14 Aligned_cols=105 Identities=24% Similarity=0.267 Sum_probs=83.7
Q ss_pred CEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
.+|||+|||+|.+++.++... ..+|+|+|+|+ +++.|+++++.+++.++|+++++|+.+. ++ .++||+||+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~--~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LP--GRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CC--CCCccEEEECCC
Confidence 689999999999999999863 45899999997 9999999999999877899999998653 33 358999999753
Q ss_pred hhh------h----------------ChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1506 GHV------L----------------YLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1506 gH~------L----------------d~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..- + ..-.....++..+.++|+|||++++..
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 210 0 011345677888889999999998653
No 80
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.00 E-value=2.7e-09 Score=114.06 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCC--------------CCcEEEEEccccccccC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDC--------------SDVITVICRRMEDIDRL 1490 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGL--------------eDRVEFIqGDAEDLesL 1490 (1662)
++.+|||+|||.|..++.+|+.|. .|+|||+|+ +++.|.+. +++ ..+|+++++|+.++. .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~-~ 108 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALT-A 108 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCC-c
Confidence 567999999999999999999988 799999997 77765332 221 236899999998865 1
Q ss_pred CCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1491 PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1491 PFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
. ..+.||+|+...+.++++ ......++..+.++|+|||++++
T Consensus 109 ~-~~~~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 A-DLGPVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred c-cCCCcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 1 135799999866656664 44566778889999999998664
No 81
>PRK05785 hypothetical protein; Provisional
Probab=98.99 E-value=3.1e-09 Score=113.75 Aligned_cols=90 Identities=20% Similarity=0.253 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++....+|+|+|+|+ |++.|++. ..++++|++++ |+.+++||+|++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l---p~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL---PFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhC---CCCCCCEEEEEecC
Confidence 4679999999999999999987324899999996 99998863 13578888874 56689999999977
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCe
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHG 1530 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGG 1530 (1662)
..+.+. .++.++.++.|+|||.+
T Consensus 119 ~l~~~~---d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 ALHASD---NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhhccC---CHHHHHHHHHHHhcCce
Confidence 666543 24567788899999954
No 82
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.99 E-value=1.4e-09 Score=123.98 Aligned_cols=100 Identities=21% Similarity=0.099 Sum_probs=79.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.+++. +..+|+++|+++ |++.|+++... .+++++.+|++++. +.++.||+|++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp---~~~~sFDvVIs~ 185 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP---FPTDYADRYVSA 185 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC---CCCCceeEEEEc
Confidence 5679999999999999888875 446899999997 99999887542 35789999998854 446789999997
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+.+++... +.+++++.++|+|||++++.
T Consensus 186 ~~L~~~~d~---~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 186 GSIEYWPDP---QRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ChhhhCCCH---HHHHHHHHHhcCCCcEEEEE
Confidence 655555322 34678889999999998753
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.99 E-value=4.1e-09 Score=111.55 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++. + ..+|+++|+++ +++.|+++++..++. +++++++|+.... .....||+|++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~~---~~~~~fD~I~~ 151 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLGY---EENAPYDRIYV 151 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC---CcCCCcCEEEE
Confidence 7889999999999999999886 3 25899999997 999999999988874 6999999987643 22478999998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...... .. ..+.+.|+|||+|+..
T Consensus 152 ~~~~~~-----~~----~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 152 TAAGPD-----IP----KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CCCccc-----ch----HHHHHhhCCCcEEEEE
Confidence 543221 22 2345789999998753
No 84
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.98 E-value=4.3e-09 Score=111.51 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.++..+++. +..+|+|||+|+ |++.|++++. .+.++++|+.+ . +.+++||+|++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~-~---~~~~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD-P---FKDNFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC-C---CCCCCEEEEEEC
Confidence 5678999999999999999886 456899999997 9999987632 36788888876 3 336899999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+.+++.+ ..+..++.++.|++ ++++++.
T Consensus 113 ~vL~hl~p-~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 113 GVLIHINP-DNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ChhhhCCH-HHHHHHHHHHHhhc--CcEEEEE
Confidence 87776654 35566677887877 4455543
No 85
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.98 E-value=4.1e-09 Score=121.18 Aligned_cols=101 Identities=28% Similarity=0.301 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. ++ .+++..+|..++ + ++||+|++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~---~~fD~Ivs~ 235 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---N---GQFDRIVSV 235 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---C---CCCCEEEEe
Confidence 37789999999999999999986333899999997 9999998874 33 388888888764 2 689999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.+++.. ..+..++..+.++|+|||++++..
T Consensus 236 ~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 236 GMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred CchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 65555432 335567788899999999998764
No 86
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.98 E-value=4.7e-09 Score=110.06 Aligned_cols=105 Identities=24% Similarity=0.235 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||+|||+|.++..+++. +..+|+|+|+++ +++.|++++...++. ++.++++|+.+. ++ .++||+|+++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~--~~--~~~fD~Vi~n 161 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP--LP--GGKFDLIVSN 161 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc--Cc--CCceeEEEEC
Confidence 3468999999999999999986 345899999997 999999999988885 699999998763 33 4789999997
Q ss_pred Cchhhh------Ch-----------------HHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVL------YL-----------------DSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~L------d~-----------------EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+..... .. -..+..++..+.++|+|||.+++.
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 643321 00 012346678888999999999864
No 87
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.97 E-value=4.4e-09 Score=115.54 Aligned_cols=106 Identities=25% Similarity=0.278 Sum_probs=83.4
Q ss_pred CEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
.+|||||||+|.+++.++... ..+|+|+|+++ +++.|++++..+++.+++.|+++|+.+. ++ ..+||+||+++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~--~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LA--GQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--Cc--CCCccEEEECCC
Confidence 689999999999999999874 35899999997 9999999999988877799999998763 33 248999999742
Q ss_pred hhh-------------h---------ChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1506 GHV-------------L---------YLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1506 gH~-------------L---------d~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
..- . +.-..+..++..+.++|+|||+|++...
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 210 0 0112566778888899999999986543
No 88
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.97 E-value=5.4e-09 Score=108.17 Aligned_cols=101 Identities=17% Similarity=0.248 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.+++. +..+|+++|+++ +++.|++++...++. +++++.+|+.+. ++.....+|.|+..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~--~~~~~~~~d~v~~~ 116 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC--LAQLAPAPDRVCIE 116 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH--HhhCCCCCCEEEEE
Confidence 6789999999999999999875 346899999997 999999999888874 699999998652 11111346776663
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.. ..+..++..+.++|+|||++++..
T Consensus 117 ~~-------~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 117 GG-------RPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CC-------cCHHHHHHHHHHhcCCCeEEEEEe
Confidence 21 123556677789999999998554
No 89
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=6.8e-09 Score=89.42 Aligned_cols=102 Identities=27% Similarity=0.378 Sum_probs=78.8
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchh
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGH 1507 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH 1507 (1662)
+|||+|||.|.++..+++....+++++|+++ +++.+++..... ...++.++.+|+.+.. . ....++|+|++..+.+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELP-P-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhc-c-ccCCceEEEEEcccee
Confidence 4899999999999999885567999999996 777777543333 3357999999998865 2 1246899999977665
Q ss_pred hhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1508 VLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1508 ~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.. ......++..+.++|++||.+++.
T Consensus 78 ~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 53 345667778888999999999865
No 90
>PRK06202 hypothetical protein; Provisional
Probab=98.96 E-value=4.8e-09 Score=110.90 Aligned_cols=98 Identities=17% Similarity=0.213 Sum_probs=73.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh----C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA----G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA----G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
++.+|||||||+|.++..+++. | ..+|+|+|+++ |++.|++..... ++.+.+.++..+. ..+++||+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~---~~~~~fD~ 132 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELV---AEGERFDV 132 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEeccccc---ccCCCccE
Confidence 5679999999999998888763 3 23899999997 999998875433 3566666666543 23579999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEE
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLI 1532 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrL 1532 (1662)
|++..+.|++..+. +..++.++.++++ ++.+
T Consensus 133 V~~~~~lhh~~d~~-~~~~l~~~~r~~~-~~~~ 163 (232)
T PRK06202 133 VTSNHFLHHLDDAE-VVRLLADSAALAR-RLVL 163 (232)
T ss_pred EEECCeeecCChHH-HHHHHHHHHHhcC-eeEE
Confidence 99988788776543 4567788889888 4443
No 91
>PRK00811 spermidine synthase; Provisional
Probab=98.94 E-value=4.8e-09 Score=115.94 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=84.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcC--C--CCcEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEND--C--SDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNG--L--eDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.+++||+||||.|.++..+++. +..+|++||+++ +++.|++.+.... . ..+++++.+|+..+. ....++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l--~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV--AETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH--hhCCCcccE
Confidence 4679999999999999999987 677999999997 9999999876422 1 468999999998863 223478999
Q ss_pred EEEcCchhhhChHH-HHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1500 IVSNWMGHVLYLDS-LINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1500 VISE~VgH~Ld~Ed-mLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
||++.......... ....++..+.+.|+|||+++....
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99976443322221 235667788899999999986543
No 92
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=1.4e-08 Score=108.55 Aligned_cols=105 Identities=23% Similarity=0.245 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||+|||+|.+++.++... ..+|+|+|+++ +++.|++++. .....++.++++|+.+. ++ .++||+|+++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~--~~--~~~fD~Iv~n 182 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP--LP--GGRFDLIVSN 182 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc--CC--CCceeEEEEC
Confidence 56799999999999999999874 46899999997 9999999987 34446799999998653 22 4689999997
Q ss_pred Cchhhh-----------------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVL-----------------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~L-----------------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...-. ..-..+..++..+.++|+|||++++.
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 532210 01133566777888999999999863
No 93
>PRK04266 fibrillarin; Provisional
Probab=98.93 E-value=8.3e-09 Score=111.51 Aligned_cols=102 Identities=23% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-CCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-LPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-LPFEDESFDVVI 1501 (1662)
.++.+|||+|||+|.++..+++. +..+|+|+|+++ |++.+.++++.. .+|.++.+|+..... .++ .++||+|+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~~D~i~ 146 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEKVDVIY 146 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-cccCCEEE
Confidence 37889999999999999999987 335899999997 998887776542 468899999875210 111 25699999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
++... . .....++..+.++|||||.|++.
T Consensus 147 ~d~~~----p-~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 147 QDVAQ----P-NQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred ECCCC----h-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 86431 1 12234567788999999999864
No 94
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.92 E-value=8.9e-09 Score=119.26 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCC-CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGA-KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGA-KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.++.+|||+|||+|..++.+++.+. .+|+|+|+++ +++.++++++..++. +.++++|+.++..+ +..++||+|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~~-~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQW-WDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchhh-cccCCCCEEEE
Confidence 3788999999999999999998743 5899999997 999999999988874 78999999875311 12467999998
Q ss_pred cCchhhh-------------ChH------HHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1503 NWMGHVL-------------YLD------SLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1503 E~VgH~L-------------d~E------dmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
+...... ..+ .....++..+.++|+|||+|+...|++.
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 6643211 111 2234677888899999999997776543
No 95
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=7.8e-09 Score=110.96 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCC--------------CCcEEEEEccccccccC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDC--------------SDVITVICRRMEDIDRL 1490 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGL--------------eDRVEFIqGDAEDLesL 1490 (1662)
++.+|||+|||.|..++.||+.|+ .|+|||+|+ +++.+.+ ++++ ..+|+++++|+.++.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~-- 110 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALT-- 110 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCC--
Confidence 467999999999999999999988 799999997 7776532 2222 256899999998864
Q ss_pred CCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1491 PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1491 PFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.....||+|+...+.++++ ......++..+.++|+|||+++
T Consensus 111 ~~~~~~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~ 152 (218)
T PRK13255 111 AADLADVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGL 152 (218)
T ss_pred cccCCCeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEE
Confidence 11125899999977767664 4466777888999999999754
No 96
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.92 E-value=7.1e-09 Score=115.55 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+|||+|.+++.+++.+ .+|+|+|+++ +++.|+++++.+++ .+++|+++|+.++. .. ..+.||+|++++
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~-~~-~~~~~D~Vv~dP 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFA-TA-QGEVPDLVLVNP 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHH-Hh-cCCCCeEEEECC
Confidence 56899999999999999999986 5899999997 99999999999998 57999999998864 11 135799999987
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
....+. ..++ ..+ ..++|+++++.+.
T Consensus 249 Pr~G~~-~~~~----~~l-~~~~~~~ivyvsc 274 (315)
T PRK03522 249 PRRGIG-KELC----DYL-SQMAPRFILYSSC 274 (315)
T ss_pred CCCCcc-HHHH----HHH-HHcCCCeEEEEEC
Confidence 644332 2222 222 3367777666443
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.92 E-value=7.5e-09 Score=108.10 Aligned_cols=96 Identities=19% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.+ .+|+++|+++ +++.|++++...++. ++.++.+|+.+. ++ ..++||+|++..
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~--~~-~~~~fD~I~~~~ 152 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKG--WP-AYAPFDRILVTA 152 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccC--CC-cCCCcCEEEEcc
Confidence 67899999999999999888874 4899999997 999999999888875 499999998653 22 236899999965
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
....+ ...+.++|+|||+|++.
T Consensus 153 ~~~~~---------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 153 AAPEI---------PRALLEQLKEGGILVAP 174 (212)
T ss_pred Cchhh---------hHHHHHhcCCCcEEEEE
Confidence 32222 23345889999998854
No 98
>KOG4300|consensus
Probab=98.91 E-value=3.9e-09 Score=114.54 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEE-EEEccccccccCCCCCCceeEEEEcC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVIT-VICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVE-FIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
-..|||||||||..-.+.--....+|+++|.++ |-+.|.+.++++... ++. |+.++.+++.+++ +.++|+||+.+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l~--d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQLA--DGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCcccc--cCCeeeEEEEE
Confidence 345899999999876666544445899999998 999999999887554 455 9999999986555 79999999976
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++.-. + .....|.+++|+|+|||++|+..
T Consensus 154 vLCSv--e-~~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 154 VLCSV--E-DPVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred EEecc--C-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 54433 2 23445577889999999998654
No 99
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.90 E-value=5e-09 Score=118.46 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+.+++|||||||.|..+..++..|++.|+|+|.+. .....+......+....+.++..-++++. . .+.||+|+|
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp---~-~~~FDtVF~ 188 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP---N-LGAFDTVFS 188 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc---c-cCCcCEEEE
Confidence 458999999999999999999999999999999996 33222222222233333555545666643 3 478999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
-.++++... .+. .|..++..|++||.+|++.
T Consensus 189 MGVLYHrr~--Pl~-~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 189 MGVLYHRRS--PLD-HLKQLKDSLRPGGELVLET 219 (315)
T ss_pred eeehhccCC--HHH-HHHHHHHhhCCCCEEEEEE
Confidence 776666532 233 3466678999999998765
No 100
>PHA03411 putative methyltransferase; Provisional
Probab=98.90 E-value=8.3e-09 Score=115.49 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|||+|||+|.+++.++... ..+|+++|+++ |++.|++++ .+++++++|+.++. . ..+||+||++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~---~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-S---NEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-c---cCCCcEEEEc
Confidence 34689999999999999888752 45899999997 999988763 25889999998864 2 3689999998
Q ss_pred CchhhhChHHH-----------------HHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSL-----------------INAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~Edm-----------------LEaLLrALrRLLKPGGrLIPS 1535 (1662)
+..+.+..++. +..++..+..+|+|+|.+++.
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 86665432211 245556667788888866543
No 101
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.90 E-value=1.4e-08 Score=109.70 Aligned_cols=107 Identities=17% Similarity=0.097 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cC-C-CCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RL-P-HGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sL-P-FEDESFDV 1499 (1662)
++++|||||||+|..++.+++. +..+|+++|+++ +++.|+++++.+++.++|+++.+|+.+.. .+ + ...++||+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~ 147 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDF 147 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCE
Confidence 6789999999999988888775 356999999997 99999999999999999999999998752 11 0 01368999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
|+++..- .....++..+.++|+|||+|++...-
T Consensus 148 VfiDa~k------~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 148 AFVDADK------PNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred EEECCCH------HHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9996431 22234456667999999999876543
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.90 E-value=7.6e-09 Score=122.78 Aligned_cols=107 Identities=23% Similarity=0.237 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.++.. +..+|+|+|+|+ +++.|++++..+++.+++.++++|+.+. ++ .++||+||++
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~--~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IE--KQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--Cc--CCCccEEEEC
Confidence 3468999999999999988875 445899999997 9999999999988888899999998653 32 3689999996
Q ss_pred Cchhh-------------------h----ChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHV-------------------L----YLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~-------------------L----d~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.... + +.-..+..++..+.++|+|||.+++..
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 53211 0 011245667788889999999998753
No 103
>PRK04457 spermidine synthase; Provisional
Probab=98.90 E-value=4.6e-09 Score=115.10 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=81.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||||||+|.++..+++. +..+|++||+++ +++.|++.+...+...+++++.+|+.++. ....++||+|+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l--~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI--AVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH--HhCCCCCCEEEEe
Confidence 4678999999999999998876 445899999997 99999998866555568999999987753 2123689999997
Q ss_pred Cchhh-hChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHV-LYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~-Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..... ....-....++..+.+.|+|||++++.
T Consensus 144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 53321 111112356777888999999999853
No 104
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.89 E-value=9.4e-09 Score=109.49 Aligned_cols=104 Identities=13% Similarity=0.055 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.+.+|||+|||+|.+++.++..++.+|+++|+++ +++.|+++++.+++. +++++++|+.+.. +...+.||+|++++
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l--~~~~~~fDlV~~DP 129 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFL--AQPGTPHNVVFVDP 129 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHH--hhcCCCceEEEECC
Confidence 5679999999999999977666778999999997 999999999998875 6999999997742 21134699999998
Q ss_pred chhhhChHHHHHHHHHHHH--hcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARD--RFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALr--RLLKPGGrLIPSs 1536 (1662)
....- +...++..+. .+|+|+++++++.
T Consensus 130 Py~~g----~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 130 PFRKG----LLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CCCCC----hHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 74322 2333333333 4589999888654
No 105
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.88 E-value=1.6e-08 Score=117.79 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++..++. +|+++++|+..+. + .+.||+|+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~--~--~~~fD~Vl 323 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS--P--EEQPDAIL 323 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc--c--CCCCCEEE
Confidence 36789999999999999888875 245899999997 999999999998885 6999999998753 2 36899999
Q ss_pred EcCchhhh-------------ChH------HHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1502 SNWMGHVL-------------YLD------SLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1502 SE~VgH~L-------------d~E------dmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
++...... ..+ .....++..+.++|+|||+|+...|++
T Consensus 324 ~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 324 LDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 86432111 111 123457888889999999999776654
No 106
>KOG1271|consensus
Probab=98.88 E-value=3.2e-09 Score=113.55 Aligned_cols=111 Identities=20% Similarity=0.217 Sum_probs=86.7
Q ss_pred EEEEECCCCcHHHHHHHHhCCCE-EEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc-
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKH-VISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM- 1505 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKK-VTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V- 1505 (1662)
+|||+|||.|.+...|++.|... ++|||.|+ +++.|+..++..++++.|+|.+.|+.+.. +..++||+|+--..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD---FLSGQFDLVLDKGTL 146 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc---ccccceeEEeecCce
Confidence 99999999999999999998644 99999997 99999999999999988999999998854 33588999986221
Q ss_pred ----hhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEe
Q psy1769 1506 ----GHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCV 1542 (1662)
Q Consensus 1506 ----gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLA 1542 (1662)
++.-....-+...+..+.++|+|||++++..|++-..
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d 187 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD 187 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH
Confidence 1111112223455677789999999999877765433
No 107
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.88 E-value=2.4e-08 Score=110.90 Aligned_cols=110 Identities=14% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCC--CceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGI--ENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFED--ESFDVV 1500 (1662)
++.+|||+|||+|..+..+++.. ..+|+++|+|+ |++.|++++....-.-+|.++++|+.+...++... ....++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 45789999999999999999874 35899999996 99999988765332235788999998742133111 123344
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++....+.+..++ ...++..++++|+|||.|++..
T Consensus 143 ~~gs~~~~~~~~e-~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 143 FPGSTIGNFTPEE-AVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EecccccCCCHHH-HHHHHHHHHHhcCCCCEEEEec
Confidence 4444555555444 4567788999999999998543
No 108
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.87 E-value=1.4e-08 Score=110.83 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=85.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||+|||+|..+..+++.- ...|+|+|+++ +++.++++++.+++. +|.+++.|+..+. . ..+.||+|++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~-~--~~~~fD~Vl~ 146 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFG-A--AVPKFDAILL 146 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhh-h--hccCCCEEEE
Confidence 77899999999999999988862 35899999997 999999999999885 5999999988754 2 2356999998
Q ss_pred cCchhhh-------------ChH------HHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1503 NWMGHVL-------------YLD------SLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1503 E~VgH~L-------------d~E------dmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+...... ..+ .....++..+.++|||||+|+.+.|++
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 6543321 011 123457788889999999999776653
No 109
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.87 E-value=5.3e-09 Score=120.44 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
++.+|||+|||+|.+++.+++. +++|+|+|+++ +++.|++++..+++. +++|+.+|+.++. .+++...+||+|+++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 5679999999999999999987 56899999997 999999999999884 7999999997642 122223579999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+....+. ...+ ..+ ..|+|+++++++
T Consensus 370 PPr~G~~-~~~l----~~l-~~l~~~~ivyvs 395 (431)
T TIGR00479 370 PPRKGCA-AEVL----RTI-IELKPERIVYVS 395 (431)
T ss_pred cCCCCCC-HHHH----HHH-HhcCCCEEEEEc
Confidence 7654332 2333 333 247898877643
No 110
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.87 E-value=1.4e-08 Score=117.78 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||+|||+|..++.+++. +..+|+|+|+++ +++.+++++...++.+ |.++++|+.++. ..+ .+.||+|++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~~-~~~-~~~fD~Vl~ 326 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKVH-EKF-AEKFDKILV 326 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCccccc-chh-cccCCEEEE
Confidence 6789999999999999999986 346899999997 9999999999999864 999999998753 111 168999999
Q ss_pred cCchhhhC-------------hH------HHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1503 NWMGHVLY-------------LD------SLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1503 E~VgH~Ld-------------~E------dmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
+....... .+ .....++..+.++|+|||+|+.+.|++.
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 76422110 01 1234577888899999999996665543
No 111
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.87 E-value=1.3e-08 Score=106.85 Aligned_cols=109 Identities=17% Similarity=0.067 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
.+.+|||++||+|.+++.++.+|+++|++||.++ +++.++++++.+++.++++++++|+.+.. .+......||+|+.+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 6789999999999999999999998999999996 99999999999998778999999996642 111111248999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+.......+..+..+.. ..+|+++|++|.+.
T Consensus 129 PPy~~~~~~~~l~~l~~--~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFNGALQALLELCEN--NWILEDTVLIVVEE 159 (189)
T ss_pred cCCCCCcHHHHHHHHHH--CCCCCCCeEEEEEe
Confidence 86654333444443322 35899999988654
No 112
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.87 E-value=6.2e-09 Score=113.18 Aligned_cols=91 Identities=20% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC----CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG----AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG----AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
...+|||||||+|.++..+++.. ...|+|+|+|+ |++.|+++. .++.++++|+.++ |+.+++||+|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l---p~~~~sfD~I 155 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL---PFADQSLDAI 155 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC---CCcCCceeEE
Confidence 45789999999999999888752 23799999997 998887652 2478999998874 4557899999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
++.... ..+.++.|+|+|||+|+..
T Consensus 156 ~~~~~~----------~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 156 IRIYAP----------CKAEELARVVKPGGIVITV 180 (272)
T ss_pred EEecCC----------CCHHHHHhhccCCCEEEEE
Confidence 984321 1235567999999999853
No 113
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.86 E-value=1.8e-08 Score=107.07 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=71.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccC-----CCCCCcee
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRL-----PHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesL-----PFEDESFD 1498 (1662)
++.+|||||||+|.++..+++.. ...|+|||+++|. .+. .+.++++|+++...+ ++..++||
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----------~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----------PIV-GVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----------CCC-CcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 67899999999999999998873 3589999999842 222 489999999874200 12357899
Q ss_pred EEEEcCchhhhChH--------HHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMGHVLYLD--------SLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~Ld~E--------dmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+|+++...++.... ..+..++..+.++|+|||.|++
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 99997644332211 1235677888999999999984
No 114
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.86 E-value=1.7e-08 Score=116.74 Aligned_cols=115 Identities=12% Similarity=-0.002 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++..++...+.+..+|..... .....++||+|++
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~-~~~~~~~fD~Vll 315 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS-QWAENEQFDRILL 315 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc-ccccccccCEEEE
Confidence 36789999999999999999986 445899999997 99999999999888644555777765432 1112468999998
Q ss_pred cCchhhhC-------------h------HHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1503 NWMGHVLY-------------L------DSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1503 E~VgH~Ld-------------~------EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
+....... . ......++..+.++|||||+|+.+.|++.
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 64322210 0 01245677888899999999997776643
No 115
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.86 E-value=1.7e-08 Score=117.21 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=86.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-CCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-PHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-PFEDESFDVVI 1501 (1662)
++.+|||+|||+|..+..+++. +..+|+|+|+++ +++.++++++..|+. +|+++++|+.++... +...++||+|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 6789999999999999999886 245899999996 999999999999986 499999999875310 12246899999
Q ss_pred EcCchhhh------C-------hH------HHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1502 SNWMGHVL------Y-------LD------SLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1502 SE~VgH~L------d-------~E------dmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
++...... + .+ .....++.++.++|||||+|+...|+++
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 86543211 0 01 1245677888899999999997776643
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.86 E-value=2e-08 Score=109.46 Aligned_cols=103 Identities=19% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCC-CCCceeEEEEc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPH-GIENVDIIVSN 1503 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPF-EDESFDVVISE 1503 (1662)
..+|||+|||+|.+++.+++. +..+|+|+|+++ +++.|++++..++ ++++++|+.+.. +. ..++||+||++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l--~~~~~~~fDlVv~N 160 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDAL--PTALRGRVDILAAN 160 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhc--chhcCCCEeEEEEC
Confidence 458999999999999999875 344899999997 9999999998765 468899987642 10 12579999998
Q ss_pred Cchhhh-----------------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVL-----------------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~L-----------------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...-. +.-..+..++..+.++|+|||++++.
T Consensus 161 PPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 161 APYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred CCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 743210 11223567788888999999999854
No 117
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.86 E-value=8e-09 Score=118.08 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+|||+|.+++.++..+ .+|+|||+++ +++.|+++++.+++. +++|+++|+.++. .....+||+||+++
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~--~~~~~~~D~vi~DP 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFA--TAQMSAPELVLVNP 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHH--HhcCCCCCEEEECC
Confidence 46799999999999999999875 5899999997 999999999999985 7999999998753 11124699999998
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
....+. +..+ ..+ ..++|+++++.+
T Consensus 309 Pr~G~~-~~~l----~~l-~~~~p~~ivyvs 333 (374)
T TIGR02085 309 PRRGIG-KELC----DYL-SQMAPKFILYSS 333 (374)
T ss_pred CCCCCc-HHHH----HHH-HhcCCCeEEEEE
Confidence 754332 2333 333 247898887744
No 118
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.85 E-value=2.7e-08 Score=116.57 Aligned_cols=106 Identities=21% Similarity=0.150 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||||||+|.+++.+++. +..+|+|+|+|+ |++.|+++++.++. ++.++++|+.+.. ++ ..++||+|+|+
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~-l~-~~~~FDLIVSN 326 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTD-MP-SEGKWDIIVSN 326 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccc-cc-cCCCccEEEEC
Confidence 4568999999999999998875 456899999997 99999999988764 6999999987643 32 13579999998
Q ss_pred Cchhhh----------------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVL----------------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~L----------------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+..... +.-.++..++..+.++|+|||.+++.
T Consensus 327 PPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 327 PPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred CCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 743110 11124557777788999999998753
No 119
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=1.9e-08 Score=117.27 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||+|||+|..+..++.. +..+|+|+|+++ +++.++++++..++. +++++++|+..+.. +..++||+|++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~--~~~~~fD~Vl~ 313 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTE--YVQDTFDRILV 313 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhh--hhhccCCEEEE
Confidence 7789999999999999999886 245899999997 999999999998885 59999999987531 22468999998
Q ss_pred cCchhhhC-----h--------------HHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1503 NWMGHVLY-----L--------------DSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1503 E~VgH~Ld-----~--------------EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+.....+. + ......++..+.++|+|||+++.+.|++
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 65442221 0 1123566788889999999999888773
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=98.85 E-value=2.9e-08 Score=111.94 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCcHH-HHHHHH-h-CCCEEEEEechH-HHHHHHHHHHh-cCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLL-SLFCAE-A-GAKHVISVDCSV-ITQLTQEVVEE-NDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlL-SL~LAR-A-GAKKVTGVDISp-MLEiARENAre-NGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++|||||||.|.+ ++.++. . ...+++++|+++ +++.|++.+.. .++.++|+|..+|+.++. + ..+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~--~-~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT--E-SLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc--c-ccCCcCEE
Confidence 678999999997744 444443 3 345899999997 99999999964 788889999999998753 1 13689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++.. .+.... .....++..+.+.|+|||.++...
T Consensus 200 F~~A-Li~~dk-~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLAA-LVGMDK-EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEec-cccccc-ccHHHHHHHHHHhcCCCcEEEEec
Confidence 9984 333321 234566788889999999999554
No 121
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.84 E-value=1.9e-08 Score=113.63 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCC----CCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDC----SDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGL----eDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
++.+|||||||+|.+++.+++.|. +|+|+|+|+ |++.|++++...+. ..++.|.++|++++. ++||+|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~------~~fD~V 216 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLS------GKYDTV 216 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcC------CCcCEE
Confidence 578999999999999999999876 899999997 99999998876421 135788888886642 689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+|..+.+++..+ ....++..+.+ +.++|.+|
T Consensus 217 v~~~vL~H~p~~-~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 217 TCLDVLIHYPQD-KADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEcCEEEecCHH-HHHHHHHHHHh-hcCCEEEE
Confidence 996554444433 33455555544 45666655
No 122
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.83 E-value=1.6e-08 Score=102.77 Aligned_cols=100 Identities=20% Similarity=0.222 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++. +.+|+++|+++ +++.+++++.. ..+++++.+|+.++. ++ +..||+|++++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~-~~--~~~~d~vi~n~ 85 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFD-LP--KLQPYKVVGNL 85 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCC-cc--ccCCCEEEECC
Confidence 6679999999999999999998 45899999997 99999888753 247999999999865 33 45699999998
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..+.. ...+..++.. ..+.++|.|++..
T Consensus 86 Py~~~--~~~i~~~l~~--~~~~~~~~l~~q~ 113 (169)
T smart00650 86 PYNIS--TPILFKLLEE--PPAFRDAVLMVQK 113 (169)
T ss_pred CcccH--HHHHHHHHhc--CCCcceEEEEEEH
Confidence 76643 3445555432 2345788877553
No 123
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.2e-08 Score=111.27 Aligned_cols=102 Identities=25% Similarity=0.283 Sum_probs=80.8
Q ss_pred EEEEECCCCcHHHHHHHHhCC-CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGA-KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGA-KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
+|||||||+|.+++.++.... ..|+|+|+|+ +++.|++++..+++ .++.++.+|+.+- +. ++||+||+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~--~~---~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP--LR---GKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc--cC---CceeEEEeCCCC
Confidence 799999999999999999853 4899999997 99999999999998 5677777776553 33 599999997621
Q ss_pred h--h--------------------hChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1507 H--V--------------------LYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1507 H--~--------------------Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
- - .+.-..+..++..+.+.|+|||.+++..
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 1 0 0122357778888889999999988554
No 124
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.6e-08 Score=114.06 Aligned_cols=103 Identities=25% Similarity=0.357 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||+|||.|.+++.+++.. ..+|+.+|++. +++.|++++..|+++.. .++..|+.+- .. ++||+|||+
T Consensus 158 ~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~--v~---~kfd~IisN 231 (300)
T COG2813 158 LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEP--VE---GKFDLIISN 231 (300)
T ss_pred CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEeccccc--cc---ccccEEEeC
Confidence 44599999999999999999984 56899999996 89999999999998753 6667666553 22 499999999
Q ss_pred CchhhhCh--HHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1504 WMGHVLYL--DSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1504 ~VgH~Ld~--EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+.+|.-.. ......++.+..+.|++||.|.+
T Consensus 232 PPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 232 PPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred CCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 98885421 12234677888899999999863
No 125
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.82 E-value=2.2e-08 Score=116.33 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+..|||||||+|.+++.+|+. +...|+|+|+++ +++.|.+++..+++. +|.++++|+..+. -.+.++++|.|++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll-~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLL-ELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhh-hhCCCCceeEEEEe
Confidence 4568999999999999999987 345899999996 999999999888885 5999999998753 23446899999986
Q ss_pred CchhhhCh---HHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYL---DSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~---EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
........ .-....++..+.|+|+|||.+.+..
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43221110 0123567788899999999988653
No 126
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=118.61 Aligned_cols=116 Identities=22% Similarity=0.139 Sum_probs=93.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC-CcEEEEEcccccccc-CCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS-DVITVICRRMEDIDR-LPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe-DRVEFIqGDAEDLes-LPFEDESFDVVIS 1502 (1662)
.+++||++-|=||.+++.+|..||++|++||+|. .++.|+++++.|++. .++.|+++|+.++.. ......+||+||.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 6899999999999999999999999999999996 999999999999986 668999999987631 1112358999999
Q ss_pred cCchhhh------ChHHHHHHHHHHHHhcccCCeEEEeecCceeE
Q psy1769 1503 NWMGHVL------YLDSLINAVVYARDRFLKPHGLILPDRAELYC 1541 (1662)
Q Consensus 1503 E~VgH~L------d~EdmLEaLLrALrRLLKPGGrLIPSsATLYL 1541 (1662)
++....- ........++..+.++|+|||.++++.|.-.+
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 8754432 22234556667778999999999987765443
No 127
>PHA03412 putative methyltransferase; Provisional
Probab=98.81 E-value=1.9e-08 Score=110.75 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh----CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA----GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA----GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+.+|||+|||+|.+++.+++. ....|+|+|+++ +++.|++++. ++.++.+|+.... + ..+||+|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~-~---~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE-F---DTLFDMA 118 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc-c---cCCccEE
Confidence 3579999999999999999874 234899999997 9999997642 3789999997654 3 3689999
Q ss_pred EEcCchhhhCh---------HHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHVLYL---------DSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~Ld~---------EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
|+++...-+.. -.....++....++|++|+.|+|..
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~ 163 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM 163 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence 99886553221 1235556677778899999888764
No 128
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.80 E-value=3.3e-08 Score=105.66 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
..++.+++|||||||.++..++..+ ..+|+|+|.++ +++..+++++..++ ++++++.+++.+.. +. ..++|.|+
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L--~~-~~~~daiF 107 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEAL--PD-LPSPDAIF 107 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhh--cC-CCCCCEEE
Confidence 3488999999999999999999764 56999999996 99999999999995 68999999998863 31 23799999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
...- . -++.+++.+...|+|||+||....
T Consensus 108 IGGg---~----~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 108 IGGG---G----NIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ECCC---C----CHHHHHHHHHHHcCcCCeEEEEee
Confidence 9543 2 245566666789999999995543
No 129
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.8e-08 Score=106.63 Aligned_cols=76 Identities=25% Similarity=0.340 Sum_probs=67.6
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.++.|||+|||||.+++.++-.|+.+|+|+|+++ +++.|++++.+ +..+|.|+++|+.++. .++|+||.
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~------~~~dtvim 114 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR------GKFDTVIM 114 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC------CccceEEE
Confidence 347889999999999999999999999999999996 99999999987 4467999999999975 67999999
Q ss_pred cCchh
Q psy1769 1503 NWMGH 1507 (1662)
Q Consensus 1503 E~VgH 1507 (1662)
++.+.
T Consensus 115 NPPFG 119 (198)
T COG2263 115 NPPFG 119 (198)
T ss_pred CCCCc
Confidence 87543
No 130
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.7e-08 Score=106.70 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++.+|||||||+|..+..+|+. +.+|+.+|..+ +++.|++++...|+.+ |.++++|...- ++ +...||.|+..
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G--~~-~~aPyD~I~Vt 145 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKG--WP-EEAPYDRIIVT 145 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccC--CC-CCCCcCEEEEe
Confidence 38899999999999999999998 44999999996 9999999999999975 99999999774 33 24789999985
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.....+ .+.++ +.|++||+++.
T Consensus 146 aaa~~v-----P~~Ll----~QL~~gGrlv~ 167 (209)
T COG2518 146 AAAPEV-----PEALL----DQLKPGGRLVI 167 (209)
T ss_pred eccCCC-----CHHHH----HhcccCCEEEE
Confidence 433333 23333 67899999874
No 131
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=4.8e-08 Score=114.69 Aligned_cols=103 Identities=20% Similarity=0.224 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||+.||.|.+++.+|+. +++|+|+|+++ +++.|+++++.|++.+ ++|+.++++++..-......+|+||.++
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 6789999999999999999976 67999999996 9999999999999976 9999999999751111235789999999
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
....++. ..++.+ ..++|..++++++
T Consensus 371 PR~G~~~-~~lk~l-----~~~~p~~IvYVSC 396 (432)
T COG2265 371 PRAGADR-EVLKQL-----AKLKPKRIVYVSC 396 (432)
T ss_pred CCCCCCH-HHHHHH-----HhcCCCcEEEEeC
Confidence 8887742 344444 4577888877554
No 132
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.75 E-value=3e-08 Score=111.27 Aligned_cols=112 Identities=27% Similarity=0.239 Sum_probs=83.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC-CcEEEEEccccccc-cCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS-DVITVICRRMEDID-RLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe-DRVEFIqGDAEDLe-sLPFEDESFDVVIS 1502 (1662)
.+++|||+-|=||.+++.++..||.+|+.||.|. +++.|++++..|++. .+++|++.|+.++. .+. ..++||+||+
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~-~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK-KGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH-HTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh-cCCCCCEEEE
Confidence 6789999999999999999999999999999996 999999999999986 68999999998742 111 1368999999
Q ss_pred cCchhhh---ChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1503 NWMGHVL---YLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1503 E~VgH~L---d~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
++....- .-+.....++..+.++|+|||.|+.+.|+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 8754321 12334556667777999999999877654
No 133
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.74 E-value=7.8e-08 Score=109.51 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh---------cCCCCcEEEEEccccccc---cCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE---------NDCSDVITVICRRMEDID---RLPH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre---------NGLeDRVEFIqGDAEDLe---sLPF 1492 (1662)
++.+|||||||-|.-..-...++...++|+|++. .|+.|+++... ....-...|+.+|..... .++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999987778888899999999996 88999888822 111124678888876432 1232
Q ss_pred CCCceeEEEEcC-chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1493 GIENVDIIVSNW-MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1493 EDESFDVVISE~-VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
....||+|-|-. +.+.+..+.....++..+..+|+|||+||-.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 235999999966 6666677888899999999999999999843
No 134
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.74 E-value=1.8e-08 Score=110.01 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|.|||||+|..+..+++. +...|+|+|.|+ |++.|++++. +++|..+|+..+. | ...+|+|+++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp------~~~f~~aDl~~w~--p--~~~~dllfaN 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP------DATFEEADLRTWK--P--EQPTDLLFAN 99 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC------CCceecccHhhcC--C--CCccchhhhh
Confidence 6789999999999999999987 556899999996 9999987642 4899999999986 3 4789999999
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
.+++.++.+. .++..+...|.|||.|-.....
T Consensus 100 AvlqWlpdH~---~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 100 AVLQWLPDHP---ELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred hhhhhccccH---HHHHHHHHhhCCCceEEEECCC
Confidence 9988886542 2344555889999999855443
No 135
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.74 E-value=6.5e-09 Score=114.20 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=74.9
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
=.++||+|||||+.+..+... +.+++|+|+|+ |++.|.++ ++-+ ++.++++..+. -....++||+|++.-+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl-~~~~~er~DLi~AaDV 197 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFL-EDLTQERFDLIVAADV 197 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHh-hhccCCcccchhhhhH
Confidence 468999999999999988887 67899999997 99998865 2221 23444544332 0022579999999554
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
..++ ..++.++..+..+|+|||.|.|+..++
T Consensus 198 l~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 198 LPYL---GALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHhh---cchhhHHHHHHHhcCCCceEEEEeccc
Confidence 4444 457777778889999999999887554
No 136
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.73 E-value=1e-07 Score=110.93 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
++.+|||+|||+|.+++.+++.+ .+|+|+|+|+ |++.|++++..+++. +++|+++|+.+.. .+++...+||+|+++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 66899999999999999999985 5899999997 999999999998885 6999999997642 122334679999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+....+. ..+ ..+.+ |+|+++++++.
T Consensus 375 PPr~g~~--~~~----~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 375 PPRAGAA--EVM----QALAK-LGPKRIVYVSC 400 (443)
T ss_pred cCCcChH--HHH----HHHHh-cCCCeEEEEEe
Confidence 8655431 222 33333 68888877543
No 137
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.72 E-value=7.1e-08 Score=99.80 Aligned_cols=104 Identities=28% Similarity=0.361 Sum_probs=70.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechHHHHHHHHHHHhcC--CCCcEEEEEccccccc--cCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSVITQLTQEVVEEND--CSDVITVICRRMEDID--RLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISpMLEiARENAreNG--LeDRVEFIqGDAEDLe--sLPFEDESFDVV 1500 (1662)
.+.+|||||||+|..++.++.. ++.+|+++|..+.++.++.+++.|+ ...++.+...|..+.. .. ....+||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~-~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDL-LEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHH-HS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccc-cccccCCEE
Confidence 7899999999999999999999 7779999999998899999999887 5677888888875411 01 113689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
++.=+.+ .+...+.++..+.++|+++|.++
T Consensus 124 lasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 124 LASDVLY---DEELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp EEES--S----GGGHHHHHHHHHHHBTT-TTEE
T ss_pred EEecccc---hHHHHHHHHHHHHHHhCCCCEEE
Confidence 9944433 34566777788889999999865
No 138
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.72 E-value=8e-08 Score=99.03 Aligned_cols=99 Identities=23% Similarity=0.331 Sum_probs=69.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccC-----CCCCCcee
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRL-----PHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesL-----PFEDESFD 1498 (1662)
++.+|||||||+|.++..+++. +..+|+++|++++. .. .++.++++|+.+...+ ....++||
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 7889999999999999988876 34579999999832 12 2478888888663200 12246899
Q ss_pred EEEEcCchhh-----hC---hHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1499 IIVSNWMGHV-----LY---LDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1499 VVISE~VgH~-----Ld---~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+|+++...++ +. ....++.++..+.++|+|||++++.
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 9999643211 11 1123456778888999999999853
No 139
>PLN02366 spermidine synthase
Probab=98.71 E-value=8.2e-08 Score=108.38 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhc--CC-CCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEEN--DC-SDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreN--GL-eDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||+||||.|.++..+++.. ..+|+.||+++ +++.|++.+... ++ ..+++++.+|+..+. -....++||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l-~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFL-KNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHH-hhccCCCCCEE
Confidence 56899999999999999999974 57899999997 899999987542 23 358999999987653 11114689999
Q ss_pred EEcCchhhhChH-HHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1501 VSNWMGHVLYLD-SLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1501 ISE~VgH~Ld~E-dmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
|++......... -.-..+++.+.++|+|||+++.....
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 997644332211 12346677888999999999865543
No 140
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.69 E-value=8.6e-08 Score=104.99 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcC--C-CCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEEND--C-SDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNG--L-eDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||+||||+|.++..+++.+ ..+|+++|+++ +++.|++.+...+ + ..+++++.+|..++. ....++||+|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l--~~~~~~yDvI 149 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFL--ADTENTFDVI 149 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHH--HhCCCCccEE
Confidence 45699999999999999888875 67899999997 8999998875432 1 246889998887642 1113689999
Q ss_pred EEcCchhhhChHH-HHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1501 VSNWMGHVLYLDS-LINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1501 ISE~VgH~Ld~Ed-mLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
|++.......... ....+++.+.++|+|||+++....
T Consensus 150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9976533222111 235666778899999999986643
No 141
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.69 E-value=3.5e-08 Score=103.81 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
.+.+|||+-||+|.+++.++.+||++|+.||.+. .+..++++++..++.+++.+++.|+.... .+.....+||+|+++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 7899999999999999999999999999999996 89999999999898888999999975542 111124789999999
Q ss_pred CchhhhCh-HHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYL-DSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~-EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+....... ...+..+.. ..+|+++|.||.+.
T Consensus 122 PPY~~~~~~~~~l~~l~~--~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKGLYYEELLELLAE--NNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSCHHHHHHHHHHHH--TTSEEEEEEEEEEE
T ss_pred CCcccchHHHHHHHHHHH--CCCCCCCEEEEEEe
Confidence 87665432 344444422 37999999998654
No 142
>PTZ00146 fibrillarin; Provisional
Probab=98.68 E-value=1.3e-07 Score=106.61 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++.+|||||||+|.++..+++. + ...|+|||+++ |++.+.+.+... .+|.++.+|+.....+....+.||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 47889999999999999999997 2 45899999996 654444443321 358889999864211111235799999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
++... . .....++.++.++|||||.|++
T Consensus 208 ~Dva~--p---dq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 208 ADVAQ--P---DQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EeCCC--c---chHHHHHHHHHHhccCCCEEEE
Confidence 97741 1 2234455567799999999986
No 143
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.68 E-value=1.1e-07 Score=108.04 Aligned_cols=96 Identities=20% Similarity=0.156 Sum_probs=74.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..+++.. ...|+++|+++ +++.|+++++..++ +++.++++|+.+.. .....||+|++
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~---~~~~~fD~Ii~ 155 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV---PEFAPYDVIFV 155 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc---cccCCccEEEE
Confidence 67899999999999999999863 23799999997 99999999998887 46999999987643 12357999998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
...... .. ..+.+.|+|||++++
T Consensus 156 ~~g~~~-----ip----~~~~~~LkpgG~Lvv 178 (322)
T PRK13943 156 TVGVDE-----VP----ETWFTQLKEGGRVIV 178 (322)
T ss_pred CCchHH-----hH----HHHHHhcCCCCEEEE
Confidence 532221 12 223478999999875
No 144
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.65 E-value=1.5e-07 Score=101.31 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+|||||||+|.++..++.. | ..+|++||+.+ +++.|++++...++. +|.++++|..... + ...+||.|++
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~--~-~~apfD~I~v 147 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGW--P-EEAPFDRIIV 147 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTT--G-GG-SEEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhcc--c-cCCCcCEEEE
Confidence 8899999999999999999987 4 34799999997 999999999998875 7999999987642 2 2368999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
....... ...+ .+.|++||+||.
T Consensus 148 ~~a~~~i-----p~~l----~~qL~~gGrLV~ 170 (209)
T PF01135_consen 148 TAAVPEI-----PEAL----LEQLKPGGRLVA 170 (209)
T ss_dssp SSBBSS-------HHH----HHTEEEEEEEEE
T ss_pred eeccchH-----HHHH----HHhcCCCcEEEE
Confidence 6533222 2333 377999999874
No 145
>PLN02476 O-methyltransferase
Probab=98.65 E-value=1.7e-07 Score=105.03 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cC--CCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RL--PHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sL--PFEDESFDV 1499 (1662)
..++|||||||+|..++.+|+. + ..+|+++|.++ .++.|+++++..|+.++|+++.+|+.+.. .+ ....++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 6789999999999999999985 2 34799999997 99999999999999999999999997752 11 111358999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
|+.+.-- .....++..+.++|+|||.|++...
T Consensus 198 VFIDa~K------~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDADK------RMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCCH------HHHHHHHHHHHHhcCCCcEEEEecC
Confidence 9996531 2233444556689999999997654
No 146
>KOG2361|consensus
Probab=98.64 E-value=5.4e-08 Score=107.51 Aligned_cols=178 Identities=15% Similarity=0.243 Sum_probs=113.6
Q ss_pred EEEEECCCCcHHHHHHHHhCC---CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGA---KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGA---KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
+|||||||.|.....+++... -+|+++|.|+ +++..++....+. .++...+.|+.... .-+...+++|+|++.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE
Confidence 899999999999999988632 3799999998 8888887755433 34555555554432 134456899999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeecc-cc---chhhhhcccc---cccCCCchhhhhccccccc
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAN-DT---MAATKYSFWH---DVYGFDMEPIQRDLPNIAK 1576 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIE-De---y~dErIafWe---nVYGFDMS~Lrr~LpdaA~ 1576 (1662)
.++..+.++.+.. ++..+.++|||||.|++.....+-.... .. ...+....-. .+|-|+...+......+.
T Consensus 152 FvLSAi~pek~~~-a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag- 229 (264)
T KOG2361|consen 152 FVLSAIHPEKMQS-VIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAG- 229 (264)
T ss_pred EEEeccChHHHHH-HHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcc-
Confidence 8888887776655 4589999999999999887554433211 11 0011110011 135555555554111111
Q ss_pred cccCCCCcccCCCeEEEEEeCCCCCCCCCceEEEEEEEeeeCeeEEEEEEEEEEEEcCC
Q psy1769 1577 FHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNAFVLYFKVILKLI 1635 (1662)
Q Consensus 1577 eEPVDpekLLSEP~eIfdFDFnTidvEDLsfSv~FEfkIkRdGt~HGFAfWFDLdLDgd 1635 (1662)
| ......+...+.+.+.-.++.-.+|+.+.|...
T Consensus 230 --------------------f-----~~~~~~~~~rl~vNr~k~lkm~Rvwvq~~f~k~ 263 (264)
T KOG2361|consen 230 --------------------F-----EEVQLEVDCRLLVNRKKQLKMYRVWVQAKFQKP 263 (264)
T ss_pred --------------------c-----chhcccceeeeeeehhccCccceEEEEEEeecC
Confidence 1 111122344567788888999999999988653
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=98.62 E-value=1.9e-07 Score=108.09 Aligned_cols=110 Identities=16% Similarity=0.153 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHH-----HhcCC-CCcEEEEEccccccccCCCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVV-----EENDC-SDVITVICRRMEDIDRLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENA-----reNGL-eDRVEFIqGDAEDLesLPFEDESF 1497 (1662)
.+++||+||||+|..+..+++.+ ..+|++||+++ |++.|++.. ....+ ..+++++.+|+.++. ....++|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL--~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFL--SSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHH--HhcCCCc
Confidence 56799999999999999999874 57999999997 999999621 11122 468999999999863 2234689
Q ss_pred eEEEEcCchhhh--ChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1498 DIIVSNWMGHVL--YLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1498 DVVISE~VgH~L--d~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
|+||+++..... ...-.-..++..+++.|+|||+|+....
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 999998643211 1122335667788899999999886543
No 148
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.62 E-value=1.6e-07 Score=100.73 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCC--CCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLP--HGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLP--FEDESFDV 1499 (1662)
..++||||||++|.-++.+|+. + ..+|+.||+++ .++.|++.++..|+.++|+++.+|+.++. .+. ...+.||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 6789999999999999999986 2 35899999997 99999999999999999999999998752 111 01257999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
|+.+.--. .++ ..+..+.++|+|||.||....-+.
T Consensus 125 VFiDa~K~-----~y~-~y~~~~~~ll~~ggvii~DN~l~~ 159 (205)
T PF01596_consen 125 VFIDADKR-----NYL-EYFEKALPLLRPGGVIIADNVLWR 159 (205)
T ss_dssp EEEESTGG-----GHH-HHHHHHHHHEEEEEEEEEETTTGG
T ss_pred EEEccccc-----chh-hHHHHHhhhccCCeEEEEcccccc
Confidence 99965211 122 233444589999999997765443
No 149
>PLN02672 methionine S-methyltransferase
Probab=98.62 E-value=2.2e-07 Score=118.56 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCC---------------CcEEEEEccccccc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCS---------------DVITVICRRMEDID 1488 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLe---------------DRVEFIqGDAEDLe 1488 (1662)
++.+|||||||+|.+++.+++.. ..+|+|+|+|+ +++.|++++..+++. ++|+|+++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 45789999999999999999873 46899999997 999999999887542 57999999997642
Q ss_pred cCCCCCCceeEEEEcCchh------h-----------------------------hChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1489 RLPHGIENVDIIVSNWMGH------V-----------------------------LYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH------~-----------------------------Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.....+||+||+++..- . .++-.++..++....++|+|||.++
T Consensus 198 --~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~ 275 (1082)
T PLN02672 198 --RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI 275 (1082)
T ss_pred --cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE
Confidence 21113699999976411 0 0111234667777889999999999
Q ss_pred eecCce
Q psy1769 1534 PDRAEL 1539 (1662)
Q Consensus 1534 PSsATL 1539 (1662)
+....-
T Consensus 276 lEiG~~ 281 (1082)
T PLN02672 276 FNMGGR 281 (1082)
T ss_pred EEECcc
Confidence 776533
No 150
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.9e-07 Score=102.31 Aligned_cols=99 Identities=23% Similarity=0.251 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
..++++|||.|.|+|.++..+|++ +..+|+..|+.+ +++.|+++++..++.++|++..+|+.+.. .+ +.||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~---~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DE---EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-cc---cccCEE
Confidence 348999999999999999999985 357999999996 99999999999999988999999999865 33 599999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+.++. .+- .++..+..+|+|||.+++
T Consensus 168 ~LDmp----~PW----~~le~~~~~Lkpgg~~~~ 193 (256)
T COG2519 168 FLDLP----DPW----NVLEHVSDALKPGGVVVV 193 (256)
T ss_pred EEcCC----ChH----HHHHHHHHHhCCCcEEEE
Confidence 99764 222 234566799999999883
No 151
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.61 E-value=1.1e-07 Score=98.46 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.....++|+|+++ +++.|++. +++++++|+.+.. .++.+++||+|++..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l-~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGL-EAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcc-cccCCCCcCEEEEhh
Confidence 5679999999999999988876444789999996 88777531 3678888887621 123457899999977
Q ss_pred chhhhChHHHHHHHHHHHHhcccC
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKP 1528 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKP 1528 (1662)
+.+++.. ...++.++.|.+++
T Consensus 84 ~l~~~~d---~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 84 TLQATRN---PEEILDEMLRVGRH 104 (194)
T ss_pred HhHcCcC---HHHHHHHHHHhCCe
Confidence 6655532 33344555565554
No 152
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=1.1e-07 Score=113.43 Aligned_cols=110 Identities=19% Similarity=0.157 Sum_probs=80.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCC-CEEEEEechH-HHHHHHHH--HHh---cCCC-CcEEEEEccccccccCCCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGA-KHVISVDCSV-ITQLTQEV--VEE---NDCS-DVITVICRRMEDIDRLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGA-KKVTGVDISp-MLEiAREN--Are---NGLe-DRVEFIqGDAEDLesLPFEDESF 1497 (1662)
++++|||||||+|.++..+++.+. .+|++||+++ +++.|+++ +.. ..+. .+++++.+|+.++. ....++|
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l--~~~~~~f 374 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL--RKLAEKF 374 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH--HhCCCCC
Confidence 567999999999999999998754 7999999997 99999983 221 1222 57999999998853 2223689
Q ss_pred eEEEEcCchhhhC--hHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1498 DIIVSNWMGHVLY--LDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1498 DVVISE~VgH~Ld--~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
|+|+++....... ..-.-..+++.+.+.|+|||+++....
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 9999986433211 111234566777899999999987654
No 153
>KOG1975|consensus
Probab=98.59 E-value=1.5e-07 Score=107.29 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=84.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC-----CcEEEEEccccccc---cCCCCCCc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS-----DVITVICRRMEDID---RLPHGIEN 1496 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe-----DRVEFIqGDAEDLe---sLPFEDES 1496 (1662)
++..|||+|||-|.-++..-++|...++|+||++ .+..|+++.+...-. -.+.|+++|..... .+++.+.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 6678999999999999999999999999999998 788898877642211 13789999876532 14444566
Q ss_pred eeEEEEcCchhh-hChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1497 VDIIVSNWMGHV-LYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1497 FDVVISE~VgH~-Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
||+|-|....|+ +..+...+.+|..+.+.|+|||++|
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 999999775554 4566677888899999999999998
No 154
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.55 E-value=8.3e-07 Score=94.48 Aligned_cols=97 Identities=22% Similarity=0.239 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
...+|||||+|.|.++..++++ ..-+++.+|+-.+++.+++ .++|+++.+|+.+ + +| . +|+|+...
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-------~~rv~~~~gd~f~-~-~P---~-~D~~~l~~ 166 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-------ADRVEFVPGDFFD-P-LP---V-ADVYLLRH 166 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-------TTTEEEEES-TTT-C-CS---S-ESEEEEES
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-------ccccccccccHHh-h-hc---c-ccceeeeh
Confidence 4568999999999999999987 3448999999878888877 4789999999983 3 67 4 99999998
Q ss_pred chhhhChHHHHHHHHHHHHhcccCC--eEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPH--GLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPG--GrLIPSs 1536 (1662)
++|....+.. ..+|+.+++.|+|| |+|++..
T Consensus 167 vLh~~~d~~~-~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 167 VLHDWSDEDC-VKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp SGGGS-HHHH-HHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhhcchHHH-HHHHHHHHHHhCCCCCCeEEEEe
Confidence 9998876655 56678999999999 9998554
No 155
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=8.9e-07 Score=94.91 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
..+.+|||+-+|+|.+++.++.+|+.+|+.||.+. .+..++++++..++..++.++..|+..........+.||+|+.+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 37899999999999999999999999999999995 89999999999888888999999998542111112349999999
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+..+.-..+..+..++-.-..+|+|+|.+++....-
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 987733222222222222357899999999776543
No 156
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.53 E-value=5.1e-07 Score=98.68 Aligned_cols=108 Identities=16% Similarity=0.088 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-----------cCCCCcEEEEEccccccccCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-----------NDCSDVITVICRRMEDIDRLPHG 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre-----------NGLeDRVEFIqGDAEDLesLPFE 1493 (1662)
++.+||+.|||.|.-+..||+.|. +|+|+|+|+ +++.+.+.... .--...|+++++|+.++...+..
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 467999999999999999999999 699999997 77766442100 00124699999999987410111
Q ss_pred CCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1494 DESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+.||+|+-..+++.++ ..+.......+.++|+|||.++..
T Consensus 122 ~~~fD~VyDra~~~Alp-p~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 122 LPVFDIWYDRGAYIALP-NDLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred cCCcCeeeeehhHhcCC-HHHHHHHHHHHHHHhCCCcEEEEE
Confidence 25899999877777774 457777888899999999998743
No 157
>KOG2904|consensus
Probab=98.53 E-value=9.3e-07 Score=99.49 Aligned_cols=111 Identities=25% Similarity=0.214 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc--cCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID--RLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe--sLPFEDESFDVVI 1501 (1662)
.+..|||+|||+|.+++.++.. +-..|+|||.|+ ++..|.+++..+++.+++.+++.+++... ..+...+++|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4558999999999999988875 556899999997 89999999999999999999977655432 1222358999999
Q ss_pred EcCchhh-----------------------hChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1502 SNWMGHV-----------------------LYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1502 SE~VgH~-----------------------Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+++..-. ...-..+..++.-..|+|+|||.+.+..
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 9764221 1112234455566779999999988654
No 158
>KOG2899|consensus
Probab=98.52 E-value=2.9e-07 Score=102.07 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCC------------------------------
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDC------------------------------ 1473 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGL------------------------------ 1473 (1662)
.+..+|||||.+|.+++.+|+. |+..|.||||++ +|..|++.++...-
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 7789999999999999999997 888999999998 89999988753210
Q ss_pred ----CCcE-------EEEEccccccccCCCCCCceeEEEEcC---chhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1474 ----SDVI-------TVICRRMEDIDRLPHGIENVDIIVSNW---MGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1474 ----eDRV-------EFIqGDAEDLesLPFEDESFDVVISE~---VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.+++ .+...|+.+ +....||+|+|-. -.|.--.++-+..++..+.++|.|||+||.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~-----~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLD-----MIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccCCcchhcccccEEEecchhhh-----hccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 0011 111111221 2246899999922 122222334566777999999999999983
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.51 E-value=9.7e-07 Score=97.58 Aligned_cols=101 Identities=24% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCC-CCCceeEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPH-GIENVDII 1500 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPF-EDESFDVV 1500 (1662)
.++.+|||.|.|+|.++..+++. +..+|+..|+.+ .++.|+++++..++.++|++.+.|+.+.. ++. .+..+|.|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g-~~~~~~~~~Dav 117 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG-FDEELESDFDAV 117 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG---STT-TTSEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc-ccccccCcccEE
Confidence 39999999999999999999986 356999999996 99999999999999999999999997532 211 13679999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcc-cCCeEEEe
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFL-KPHGLILP 1534 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLL-KPGGrLIP 1534 (1662)
+.++..-.. .+ ..+.+.| ++||+|+.
T Consensus 118 fLDlp~Pw~----~i----~~~~~~L~~~gG~i~~ 144 (247)
T PF08704_consen 118 FLDLPDPWE----AI----PHAKRALKKPGGRICC 144 (247)
T ss_dssp EEESSSGGG----GH----HHHHHHE-EEEEEEEE
T ss_pred EEeCCCHHH----HH----HHHHHHHhcCCceEEE
Confidence 998753322 23 3445889 89999883
No 160
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.51 E-value=6.6e-07 Score=97.64 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=84.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEE-ccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVIC-RRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIq-GDAEDLesLPFEDESFDVVI 1501 (1662)
..++|||||++.|.-++++|.. . ..+++.||+++ +++.|++++++.|+.++|+++. +|+.+... ....++||+|+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~-~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLS-RLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHH-hccCCCccEEE
Confidence 6889999999999999999986 2 45899999997 9999999999999999999999 58877531 12358999999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
.+.- ......++..+.++|+|||.++...+-+.
T Consensus 138 IDad------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 138 IDAD------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EeCC------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9542 11223344555689999999997764433
No 161
>KOG3010|consensus
Probab=98.49 E-value=1e-07 Score=105.31 Aligned_cols=97 Identities=26% Similarity=0.298 Sum_probs=70.5
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchh
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGH 1507 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH 1507 (1662)
.++|||||+|..++.+|.. .++|+|+|+|+ ||+.|++.....-..-...+...++.++. ..++++|+|+|.-..|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~---g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL---GGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc---CCCcceeeehhhhhHH
Confidence 7899999999888999988 78999999997 99998876443222222333334444432 2368999999988888
Q ss_pred hhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1508 VLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1508 ~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.++. +.+...+.|+||+.|-+|
T Consensus 112 WFdl----e~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 112 WFDL----ERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred hhch----HHHHHHHHHHcCCCCCEE
Confidence 8864 445566689999877443
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.46 E-value=9.6e-07 Score=97.43 Aligned_cols=108 Identities=17% Similarity=0.063 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCC---CCCcee
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPH---GIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPF---EDESFD 1498 (1662)
..++|||||+++|.-++.+|+. + -.+|+.+|.++ .++.|++.++..|+.++|+++.+++.+.. .+.. ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 6789999999999999999985 2 34899999996 89999999999999999999999998752 1110 025899
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+|+.+.- .+ .....+..+.++|++||+||+...-+
T Consensus 159 ~iFiDad-----K~-~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 159 FIFVDAD-----KD-NYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred EEEecCC-----HH-HhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 9999642 11 22233455568999999998765433
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.42 E-value=9.7e-07 Score=99.17 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++...+...+++++++|+.++. + ..||+||+++
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~----~~~d~VvaNl 109 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-F----PYFDVCVANV 109 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-c----cccCEEEecC
Confidence 67899999999999999999974 5899999997 99999999887765578999999998865 3 3689999988
Q ss_pred chhhh
Q psy1769 1505 MGHVL 1509 (1662)
Q Consensus 1505 VgH~L 1509 (1662)
..++.
T Consensus 110 PY~Is 114 (294)
T PTZ00338 110 PYQIS 114 (294)
T ss_pred CcccC
Confidence 76665
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.40 E-value=1.2e-06 Score=95.68 Aligned_cols=74 Identities=23% Similarity=0.323 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.+ .+|+|+|+++ |++.+++++.. ..+++++++|+.++. ++ .||+||+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~-~~----~~d~Vv~Nl 99 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVD-LP----EFNKVVSNL 99 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCC-ch----hceEEEEcC
Confidence 67899999999999999999984 5899999997 99999987754 247999999998865 43 589999988
Q ss_pred chhh
Q psy1769 1505 MGHV 1508 (1662)
Q Consensus 1505 VgH~ 1508 (1662)
..+.
T Consensus 100 Py~i 103 (258)
T PRK14896 100 PYQI 103 (258)
T ss_pred Cccc
Confidence 7654
No 165
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.38 E-value=1.2e-06 Score=94.06 Aligned_cols=97 Identities=27% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
++.+|||+.||.|.+++.+|+. .++.|+|+|+++ +++.++++++.|++.++|.++++|+.++. + ...+|-|+++
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~--~~~~drvim~ 176 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--P--EGKFDRVIMN 176 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------TT-EEEEEE-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--C--ccccCEEEEC
Confidence 6889999999999999999994 366899999998 99999999999999999999999999874 2 5799999997
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.+.... .+++. +.+++++||++-
T Consensus 177 lp~~~~---~fl~~----~~~~~~~~g~ih 199 (200)
T PF02475_consen 177 LPESSL---EFLDA----ALSLLKEGGIIH 199 (200)
T ss_dssp -TSSGG---GGHHH----HHHHEEEEEEEE
T ss_pred ChHHHH---HHHHH----HHHHhcCCcEEE
Confidence 765544 23433 347899998864
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.37 E-value=6.9e-07 Score=96.55 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-c------C----CCCcEEEEEccccccccCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-N------D----CSDVITVICRRMEDIDRLPHG 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre-N------G----LeDRVEFIqGDAEDLesLPFE 1493 (1662)
++.+||..|||.|.-.+.||+.|. .|+|+|+|+ +++.|.+.... . . -..+|+++++|+.++. +..
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~--~~~ 113 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP--PED 113 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG--GSC
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC--hhh
Confidence 567999999999999999999988 899999997 77776432211 0 0 1246899999998875 211
Q ss_pred CCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1494 DESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.++||+|+--..++.++. .+.......+.++|+|||.++
T Consensus 114 ~g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp HHSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEEEEEE
T ss_pred cCCceEEEEecccccCCH-HHHHHHHHHHHHHhCCCCcEE
Confidence 257999999777777754 466777788899999999955
No 167
>KOG1541|consensus
Probab=98.37 E-value=9.7e-07 Score=97.13 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
...-|||||||+|+.+..+...|. ..+|+|+|+ |++.|.+..-+ -.++.+|+-+ .+||..+.||.||+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~--GlpfrpGtFDg~ISIS 120 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE------GDLILCDMGE--GLPFRPGTFDGVISIS 120 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh------cCeeeeecCC--CCCCCCCccceEEEee
Confidence 567899999999999999999884 899999997 99999873221 2477788874 3788899999998832
Q ss_pred ----chhhh----ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 ----MGHVL----YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 ----VgH~L----d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.+.- .+..-+..++..++.+|++|++.++.
T Consensus 121 AvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 121 AVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred eeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 22211 23344666777788999999998854
No 168
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.36 E-value=1.7e-06 Score=91.92 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=74.0
Q ss_pred EEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1429 IVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
.+||||||.|.+.+.+|+. .-..++|||+.. .+..|.+.+...++. ++.++++|+..+...-+.++++|-|+.....
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFPPGSVDRIYINFPD 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence 8999999999999999887 456899999995 777887778777884 7999999998742111235899999986544
Q ss_pred hhhChH-----HHHHHHHHHHHhcccCCeEEEee
Q psy1769 1507 HVLYLD-----SLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1507 H~Ld~E-----dmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-..... -.-..++..+.++|+|||.|.+.
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence 332111 12345566778999999998754
No 169
>PLN02823 spermine synthase
Probab=98.35 E-value=1.9e-06 Score=98.76 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcC--C-CCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEND--C-SDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNG--L-eDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||.||+|.|.++..+++. +..+|++||+++ +++.|++.+..+. + ..+++++.+|+..+. ....++||+|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L--~~~~~~yDvI 180 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL--EKRDEKFDVI 180 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH--hhCCCCccEE
Confidence 4578999999999999999886 467899999997 9999999875432 2 368999999998863 3234789999
Q ss_pred EEcCchhh---hChHHHHHHHHH-HHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHV---LYLDSLINAVVY-ARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~---Ld~EdmLEaLLr-ALrRLLKPGGrLIPSs 1536 (1662)
+++..... ....-+-..++. .+.+.|+|||+++...
T Consensus 181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred EecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99753211 111111234445 5679999999988653
No 170
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.34 E-value=5.1e-06 Score=86.93 Aligned_cols=105 Identities=26% Similarity=0.312 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CC--------EEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AK--------HVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AK--------KVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFED 1494 (1662)
++..|||--||+|.+.+.++..+ .. +++|+|+++ +++.|++++...++...|.+.+.|+.++. + ..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~--~~ 104 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-L--PD 104 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-G--TT
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-c--cc
Confidence 67899999999999999988763 22 388999996 99999999999999989999999999975 3 35
Q ss_pred CceeEEEEcCchhh-h----ChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1495 ENVDIIVSNWMGHV-L----YLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1495 ESFDVVISE~VgH~-L----d~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.+|+||+++.... + ..+.+...++..+.++|++...++
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 79999999874432 2 124566777888889999954444
No 171
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.29 E-value=2.2e-06 Score=92.40 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||.|.+...+.+.....++|+|+++ .+..+.+ +| +.++++|+++-. -.|++++||.||+.-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL-~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGL-ADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhH-hhCCCCCccEEehHh
Confidence 7899999999999999888885444899999996 4433332 34 669999998753 246689999999855
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
....+. ..+.+|.++ |+-|...|.
T Consensus 84 tLQ~~~---~P~~vL~Em---lRVgr~~IV 107 (193)
T PF07021_consen 84 TLQAVR---RPDEVLEEM---LRVGRRAIV 107 (193)
T ss_pred HHHhHh---HHHHHHHHH---HHhcCeEEE
Confidence 433331 233444433 455555553
No 172
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.29 E-value=2.2e-06 Score=94.39 Aligned_cols=75 Identities=27% Similarity=0.300 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++.+|||||||+|.++..+++.+. +|+|+|+++ |++.+++++.. .+++++++|+.++. ++ +..+|+||+++
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~-~~--~~~~~~vv~Nl 113 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD-LS--ELQPLKVVANL 113 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC-HH--HcCcceEEEeC
Confidence 678999999999999999999865 899999997 99999886632 47999999999865 33 11258999987
Q ss_pred chhh
Q psy1769 1505 MGHV 1508 (1662)
Q Consensus 1505 VgH~ 1508 (1662)
..+.
T Consensus 114 PY~i 117 (272)
T PRK00274 114 PYNI 117 (272)
T ss_pred Cccc
Confidence 6544
No 173
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.27 E-value=8.8e-07 Score=98.08 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=86.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcC-CCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEND-CSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNG-LeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+|||.+.|-|..++.++++||..|+.+|.++ +++.|.-+-=..+ ++..|+++.+|+.++. -.|.+++||+||-+
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V-~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVV-KDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHH-hcCCccccceEeeC
Confidence 6899999999999999999999999999999998 7777663311111 1235799999998875 45668999999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.-..+-.+-+-+.+..++.|+|+|||.++
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlF 242 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLF 242 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEE
Confidence 866666566677788888899999999998
No 174
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.26 E-value=3.3e-06 Score=96.44 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=63.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhc-CCCCcEEEEE-ccccccc-cCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEN-DCSDVITVIC-RRMEDID-RLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreN-GLeDRVEFIq-GDAEDLe-sLPFEDESFDVV 1500 (1662)
...+|||||||+|.+...++.. ...+++|+|+++ +++.|++++..+ ++.++|+++. .+..++. .+....+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4678999999999877666654 334899999997 999999999999 7988898864 3443321 011124689999
Q ss_pred EEcCchhhh
Q psy1769 1501 VSNWMGHVL 1509 (1662)
Q Consensus 1501 ISE~VgH~L 1509 (1662)
+|++.++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999987654
No 175
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.25 E-value=5.7e-06 Score=94.86 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=72.3
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCC------------C
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPH------------G 1493 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPF------------E 1493 (1662)
.+|||++||+|.+++.+++. +++|+|||+++ +++.|++++..+++. +++|+++|+.++. .+.. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 285 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLK 285 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhccccccccccccc
Confidence 57999999999999988885 67999999996 999999999999985 7999999998742 0100 0
Q ss_pred CCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1494 DESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..+||+||.++....+ ...++..+ ++++++++.+
T Consensus 286 ~~~~D~v~lDPPR~G~-----~~~~l~~l---~~~~~ivyvS 319 (362)
T PRK05031 286 SYNFSTIFVDPPRAGL-----DDETLKLV---QAYERILYIS 319 (362)
T ss_pred CCCCCEEEECCCCCCC-----cHHHHHHH---HccCCEEEEE
Confidence 1258999999875433 23333333 3366766644
No 176
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.25 E-value=6.1e-06 Score=95.25 Aligned_cols=107 Identities=23% Similarity=0.240 Sum_probs=86.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEc-cccccccCCCCCCceeEEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICR-RMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqG-DAEDLesLPFEDESFDVVIS 1502 (1662)
.++..|||=-||||.+.+.+.-.|+ +|+|+|++. |++-|+.+++..++.+ ..++.. |++.++ |+ +.++|.|++
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lp-l~--~~~vdaIat 270 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLP-LR--DNSVDAIAT 270 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCC-CC--CCccceEEe
Confidence 3888999999999999999999988 899999996 9999999999988765 444444 999876 55 557999999
Q ss_pred cCchhh------hChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHV------LYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~------Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++...- ..-+.++..+++.+.++|++||++++..
T Consensus 271 DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 271 DPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred cCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 774321 1235677888888999999999988543
No 177
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.23 E-value=4.3e-06 Score=95.67 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=72.4
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC--C---C---C-----
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL--P---H---G----- 1493 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL--P---F---E----- 1493 (1662)
.+|||+|||+|.+++.+++. +++|+|||+++ +++.|++++..+++. +++|+++|+.++..- . + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 46999999999999988886 56999999996 999999999999985 599999999875310 0 0 0
Q ss_pred CCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1494 DESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...||+|+.++....+ ...++..+ ++|+++++.+
T Consensus 277 ~~~~d~v~lDPPR~G~-----~~~~l~~l---~~~~~ivYvs 310 (353)
T TIGR02143 277 SYNCSTIFVDPPRAGL-----DPDTCKLV---QAYERILYIS 310 (353)
T ss_pred cCCCCEEEECCCCCCC-----cHHHHHHH---HcCCcEEEEE
Confidence 1238999999875443 22333333 3467776643
No 178
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.23 E-value=4.8e-06 Score=96.66 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=77.1
Q ss_pred CCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
+.+|||++||+|.+++.++.. ++.+|+++|+++ +++.++++++.|++. .++++++|+..+. .. ...||+|++++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l--~~-~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALL--HE-ERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHH--hh-cCCCCEEEECC
Confidence 468999999999999999875 666899999997 999999999999986 4789999998753 11 35799999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+. ...+++.. .+.+++||+|++.
T Consensus 134 ~Gs---~~~~l~~a----l~~~~~~gilyvS 157 (382)
T PRK04338 134 FGS---PAPFLDSA----IRSVKRGGLLCVT 157 (382)
T ss_pred CCC---cHHHHHHH----HHHhcCCCEEEEE
Confidence 522 22333332 3668999999876
No 179
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.23 E-value=3.3e-06 Score=92.45 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
...++||+|||.|.++..++..-+.+|-.||..+ +++.|++.+... .....++.+.-++++. | +..+||+|++.|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~--P-~~~~YDlIW~QW 130 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFT--P-EEGKYDLIWIQW 130 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-------TT-EEEEEEES
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhcc--C-CCCcEeEEEehH
Confidence 5679999999999999877655588999999997 999999876541 2234688899999875 3 246999999999
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..+|..++++ .+|..+...|+|+|+||+-+
T Consensus 131 ~lghLTD~dlv-~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 131 CLGHLTDEDLV-AFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp -GGGS-HHHHH-HHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCCHHHHH-HHHHHHHHhCcCCcEEEEEe
Confidence 88888776665 45688889999999988543
No 180
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.19 E-value=5.7e-06 Score=88.62 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCEEEEECCCCcH----HHHHHHHh---CC---CEEEEEechH-HHHHHHHHH--------------Hh-----c--C-
Q psy1769 1426 KDKIVLEVGCGMGL----LSLFCAEA---GA---KHVISVDCSV-ITQLTQEVV--------------EE-----N--D- 1472 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl----LSL~LARA---GA---KKVTGVDISp-MLEiARENA--------------re-----N--G- 1472 (1662)
...+||.+||++|- +++.+.+. .. -+|+|+|+|+ +++.|++-+ .. . .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999994 66777662 12 2899999997 888887431 00 0 0
Q ss_pred -----CCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1473 -----CSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1473 -----LeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..+|.|...|+.+.. . ..+.||+|+|-.+.-++. +.....++..+.+.|+|||+|+...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~--~~~~fD~I~CRNVlIYF~-~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-P--PFGRFDLIFCRNVLIYFD-PETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-c--ccCCccEEEecCEEEEeC-HHHHHHHHHHHHHHcCCCCEEEEec
Confidence 1257899999998822 1 247999999965555554 4456778899999999999999654
No 181
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.18 E-value=2e-05 Score=89.68 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.+-+||||.||.|...+-+... + ..+|...|.++ .++..++.+++.|+.+.++|.++|+.+...+.......+++|
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5679999999999987777765 2 36899999998 899999999999999888999999987653332235679988
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
...+.-.++...++...+..+.++|.|||++|...-.++
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 877777777777888888999999999999996654433
No 182
>KOG0820|consensus
Probab=98.17 E-value=4e-06 Score=94.44 Aligned_cols=80 Identities=30% Similarity=0.363 Sum_probs=68.7
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
...++..|||||.|||.++..++++|+ +|+|||+++ |+....++++....+.+.+++.+|....+ +| .||+||
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P----~fd~cV 128 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LP----RFDGCV 128 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-Cc----ccceee
Confidence 344889999999999999999999955 899999997 99888888876666789999999998876 66 799999
Q ss_pred EcCchhh
Q psy1769 1502 SNWMGHV 1508 (1662)
Q Consensus 1502 SE~VgH~ 1508 (1662)
++....+
T Consensus 129 sNlPyqI 135 (315)
T KOG0820|consen 129 SNLPYQI 135 (315)
T ss_pred ccCCccc
Confidence 9765444
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.16 E-value=1.7e-05 Score=86.22 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCcee---EEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVD---IIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFD---VVI 1501 (1662)
++.+|||||||+|.++..+++.+. .|+++|+++ +++.+++++.. ..+++++++|+.++. ++ .+| +||
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~-~~----~~d~~~~vv 99 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD-LP----DFPKQLKVV 99 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC-hh----HcCCcceEE
Confidence 678999999999999999999864 799999997 88888877643 357999999998865 32 466 888
Q ss_pred EcCchhh
Q psy1769 1502 SNWMGHV 1508 (1662)
Q Consensus 1502 SE~VgH~ 1508 (1662)
+++..+.
T Consensus 100 sNlPy~i 106 (253)
T TIGR00755 100 SNLPYNI 106 (253)
T ss_pred EcCChhh
Confidence 8876554
No 184
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.15 E-value=1.5e-05 Score=87.41 Aligned_cols=38 Identities=37% Similarity=0.448 Sum_probs=34.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQL 1463 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEi 1463 (1662)
.+.+|||||||+|.++..+++.|+++|+|||+++ |+..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 7889999999999999999999999999999996 6654
No 185
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.15 E-value=8.4e-06 Score=91.79 Aligned_cols=113 Identities=17% Similarity=0.171 Sum_probs=85.3
Q ss_pred CEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcC--C-CCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEEND--C-SDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNG--L-eDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++||-||-|.|.++..+++.. ..+++.||+++ +++.|++.+.... . ..|++++..|..++. ....++||+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v--~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL--RDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH--HhCCCcCCEEEE
Confidence 699999999999999999985 67999999997 9999999886433 2 378999999998874 212348999999
Q ss_pred cCchhhhChHHH-HHHHHHHHHhcccCCeEEEeecCceeEe
Q psy1769 1503 NWMGHVLYLDSL-INAVVYARDRFLKPHGLILPDRAELYCV 1542 (1662)
Q Consensus 1503 E~VgH~Ld~Edm-LEaLLrALrRLLKPGGrLIPSsATLYLA 1542 (1662)
+......+.+.+ -..+++.+++.|+++|+++......++.
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 765442221111 2456677889999999999775544433
No 186
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.14 E-value=5.2e-06 Score=84.82 Aligned_cols=78 Identities=15% Similarity=0.074 Sum_probs=59.6
Q ss_pred EEEechH-HHHHHHHHHHhcC--CCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCC
Q psy1769 1453 ISVDCSV-ITQLTQEVVEEND--CSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPH 1529 (1662)
Q Consensus 1453 TGVDISp-MLEiARENAreNG--LeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPG 1529 (1662)
+|+|+|+ |++.|+++.+... ...+|+|+++|++++ |+.+++||+|++....+.+. ....+++++.|+||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~---d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVV---DRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC---CCCCCCeeEEEecchhhcCC---CHHHHHHHHHHHcCcC
Confidence 4899996 9999987765322 234699999999985 45578999999977666553 2456678889999999
Q ss_pred eEEEeec
Q psy1769 1530 GLILPDR 1536 (1662)
Q Consensus 1530 GrLIPSs 1536 (1662)
|.|++..
T Consensus 75 G~l~i~d 81 (160)
T PLN02232 75 SRVSILD 81 (160)
T ss_pred eEEEEEE
Confidence 9998554
No 187
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.14 E-value=1e-05 Score=88.74 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=80.2
Q ss_pred CEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
..+||||||.|.+...+|+. .-..++|||+.. .+..|.+.+.+.++. ++.++++|+.++...-++++++|-|.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 48999999999999888887 456799999995 778888888888886 799999999887522223458998888654
Q ss_pred hhhhC-----hHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1506 GHVLY-----LDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1506 gH~Ld-----~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.-..- ..-....++..+.+.|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 33221 11123455666789999999987543
No 188
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.10 E-value=2.3e-05 Score=93.50 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++.+|||++||.|.-+..+|.. +...|+++|+++ -++.++++++..|+. +|.+...|...+... ..+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~--~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAA--LPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhh--chhhcCeEE
Confidence 37889999999999988888876 245899999996 788999999998985 588999998875311 126799999
Q ss_pred EcCchhhh----C---------------hHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1502 SNWMGHVL----Y---------------LDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1502 SE~VgH~L----d---------------~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
.+...... - .......+|....++|||||+||.+.|++
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 76543311 0 01123567777789999999999888875
No 189
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.10 E-value=9.8e-06 Score=88.90 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCC---CCcEEEEEccccccccCCCCCC-ceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDC---SDVITVICRRMEDIDRLPHGIE-NVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGL---eDRVEFIqGDAEDLesLPFEDE-SFDV 1499 (1662)
.+++||-||-|.|.++..+++.. .++|++||+++ +++.|++.+..... ..+++++.+|...+. ....+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l--~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFL--KETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHH--HTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHH--HhccCCcccE
Confidence 57899999999999999999875 67999999997 88999988765322 368999999998864 11224 8999
Q ss_pred EEEcCchhhhChH-HHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVSNWMGHVLYLD-SLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VISE~VgH~Ld~E-dmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||.+......... -+-..+++.+++.|+|||+++...
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9996654221111 123456677789999999998543
No 190
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=1.2e-05 Score=92.68 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
+|.+|||+-||.|.+++.+|+.|..+|+|+|+++ +++.++++++.|++.+.|..+++|+.++. + ..+.+|-|++..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~--~-~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA--P-ELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh--h-ccccCCEEEeCC
Confidence 6899999999999999999999887799999998 99999999999999999999999999975 2 226799999976
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.... .++... .++|++||++.
T Consensus 265 p~~a~---~fl~~A----~~~~k~~g~iH 286 (341)
T COG2520 265 PKSAH---EFLPLA----LELLKDGGIIH 286 (341)
T ss_pred CCcch---hhHHHH----HHHhhcCcEEE
Confidence 54322 233333 37788899886
No 191
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=1.3e-05 Score=90.37 Aligned_cols=107 Identities=11% Similarity=0.102 Sum_probs=76.7
Q ss_pred CCEEEEECCCCcH----HHHHHHHhC-----CCEEEEEechH-HHHHHHHHH------------------Hh-----cC-
Q psy1769 1427 DKIVLEVGCGMGL----LSLFCAEAG-----AKHVISVDCSV-ITQLTQEVV------------------EE-----ND- 1472 (1662)
Q Consensus 1427 GKRVLDIGCGTGl----LSL~LARAG-----AKKVTGVDISp-MLEiARENA------------------re-----NG- 1472 (1662)
..+||..||+||- +++.+++.. .-+|+|+|+++ +++.|++-+ .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999994 667666641 13799999996 888887652 00 01
Q ss_pred ------CCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1473 ------CSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1473 ------LeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+...|.|...|+.+.. .+. .+.||+|+|..+..++.. .....++..+.+.|+|||+|+...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~-~~~-~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ-WAV-PGPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC-Ccc-CCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeC
Confidence 2356788888887643 221 378999999665555544 456777899999999999988654
No 192
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.06 E-value=8.4e-05 Score=63.43 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=65.8
Q ss_pred EEEECCCCcHHHHHHHHhCC--CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCC-CceeEEEEcCc
Q psy1769 1430 VLEVGCGMGLLSLFCAEAGA--KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGI-ENVDIIVSNWM 1505 (1662)
Q Consensus 1430 VLDIGCGTGlLSL~LARAGA--KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFED-ESFDVVISE~V 1505 (1662)
|||+|||+|... .++.... ..++++|+++ ++..++........ ..+.++.++..... +++.. ..||++++...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGV-LPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCC-CCCCCCCceeEEeeeee
Confidence 999999999977 4444322 3799999996 77665544332111 11678888876621 33434 48999944444
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
.+... ...++..+.+.|+|+|.+++....
T Consensus 129 ~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 129 LHLLP----PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred hhcCC----HHHHHHHHHHhcCCCcEEEEEecc
Confidence 44433 455567778999999998866543
No 193
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.01 E-value=3.6e-05 Score=88.28 Aligned_cols=80 Identities=26% Similarity=0.253 Sum_probs=57.6
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc----------C---CCCC
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR----------L---PHGI 1494 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes----------L---PFED 1494 (1662)
.|||+.||+|.+++.+|+. +++|+|||+++ +++.|+++++.|++. +++|++++++++.. + ....
T Consensus 199 ~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 7999999999999999997 66999999996 999999999999995 69999988876420 0 0012
Q ss_pred CceeEEEEcCchhhhC
Q psy1769 1495 ENVDIIVSNWMGHVLY 1510 (1662)
Q Consensus 1495 ESFDVVISE~VgH~Ld 1510 (1662)
..+|+||.++....+.
T Consensus 277 ~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 277 FKFDAVILDPPRAGLD 292 (352)
T ss_dssp TTESEEEE---TT-SC
T ss_pred cCCCEEEEcCCCCCch
Confidence 3689999999887774
No 194
>KOG3191|consensus
Probab=98.01 E-value=4e-05 Score=82.89 Aligned_cols=101 Identities=24% Similarity=0.260 Sum_probs=79.0
Q ss_pred CCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...|||||||+|..+.++++. +...+.++|+++ +++..++.++.|+. ++..++.|+..-. . .+++|+++.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l--~--~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGL--R--NESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhh--c--cCCccEEEEC
Confidence 678999999999999999986 345788999997 88888888888876 4888999887753 2 3899999986
Q ss_pred Cchhh------------------hChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHV------------------LYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~------------------Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+..-. ......++.++.++..+|.|.|.++
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 53211 1333457888888888999999976
No 195
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.01 E-value=1.4e-05 Score=86.89 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=76.4
Q ss_pred EEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC------CCCCceeEE
Q psy1769 1429 IVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP------HGIENVDII 1500 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP------FEDESFDVV 1500 (1662)
+|||||||||..+..+|+. ..-.-.-.|+.+ .+...++.+.+.++.+-..-+..|+.... .+ +..+.||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~-w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPP-WPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCC-CccccccccCCCCccee
Confidence 6999999999999999987 323455667775 44555666666666544455566666542 22 124689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+|..+.|+.+++.. +.++..+.++|++||.|+.-
T Consensus 107 ~~~N~lHI~p~~~~-~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 107 FCINMLHISPWSAV-EGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred eehhHHHhcCHHHH-HHHHHHHHHhCCCCCEEEEe
Confidence 99999999987755 66778888999999999843
No 196
>KOG1501|consensus
Probab=98.00 E-value=4e-06 Score=98.56 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=114.9
Q ss_pred CceeEEEEcCch--hhhChHHHH-HHHHHHHHhcccCCeEEEeecCceeEeeccccchhhhhcccccccCCCchhhhhcc
Q psy1769 1495 ENVDIIVSNWMG--HVLYLDSLI-NAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATKYSFWHDVYGFDMEPIQRDL 1571 (1662)
Q Consensus 1495 ESFDVVISE~Vg--H~Ld~EdmL-EaLLrALrRLLKPGGrLIPSsATLYLAPIEDey~dErIafWenVYGFDMS~Lrr~L 1571 (1662)
++.|+|+++++. .+.+|..+. --....+...+-++.++.|..+.+.+.+...+..+....-...+.|||++.|.+..
T Consensus 428 ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~G~~~GFDl~~~Dei~ 507 (636)
T KOG1501|consen 428 DSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASDVGTVNGFDLSFFDEIS 507 (636)
T ss_pred CCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcccccccccceeeehhHHH
Confidence 355888765522 222332211 01123455678899999999999999998877444444556789999999988854
Q ss_pred ccccccc-------c--CCCCcccCCCeEEEEEeCCCCCCCCCceEEEEEEEeeeCeeEEEEEEEEEEEEcCCcccccCc
Q psy1769 1572 PNIAKFH-------P--VPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNAFVLYFKVILKLILRVEPHK 1642 (1662)
Q Consensus 1572 pdaA~eE-------P--VDpekLLSEP~eIfdFDFnTidvEDLsfSv~FEfkIkRdGt~HGFAfWFDLdLDgdIStSPsp 1642 (1662)
..+.-.. + ..++.+++++.++++|+|...-..+ ...+.+.+.|.-||+.+||+++|. ++.++|+.
T Consensus 508 ~kA~~~~da~~~E~~LWEY~~~~~~d~~eIL~F~~~~~V~~Q-----k~~V~i~~~~sS~A~~mWME~~~~-~~nLSTGL 581 (636)
T KOG1501|consen 508 TKARTATDAIVDEQSLWEYAGIVKGDAVEILRFPIDGRVSSQ-----KCVVNIDNMSSSNAIPMWMEWEFG-GINLSTGL 581 (636)
T ss_pred HhhchhhhhhhccchhhhccCeecCCceeEEEeccCCccccc-----eeEEEccCCCccccceeeEEeeeC-ceeecccc
Confidence 4432111 2 4567789999999999997544332 455678899999999999999999 88999999
Q ss_pred cccccccCCCCCCCCccccC
Q psy1769 1643 FQVLAQSRKNFQPGTSDVQA 1662 (1662)
Q Consensus 1643 l~VLaqS~~pWqPaTHW~QA 1662 (1662)
+..-..+.++|.+ |.+|+
T Consensus 582 L~~~~~G~~~WN~--~~KQ~ 599 (636)
T KOG1501|consen 582 LSISSAGVPEWNK--GYKQG 599 (636)
T ss_pred eeecCCCCcccCc--cccce
Confidence 9988889999976 34553
No 197
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.98 E-value=2.2e-05 Score=91.25 Aligned_cols=99 Identities=15% Similarity=0.147 Sum_probs=79.0
Q ss_pred CCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
+.+|||+.||+|..++.++.. |+++|+++|+++ +++.++++++.+++. +++++++|+..+. .....+||+|+.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l--~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL--RYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHH--HHhCCCCCEEEeC
Confidence 358999999999999999987 788999999997 999999999999875 5899999998864 2112579999998
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.+. ...+++. +.+.+++||.|.+.
T Consensus 122 PfGs---~~~fld~----al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PFGT---PAPFVDS----AIQASAERGLLLVT 146 (374)
T ss_pred CCCC---cHHHHHH----HHHhcccCCEEEEE
Confidence 8432 2234443 34788999999866
No 198
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.98 E-value=2.4e-05 Score=87.79 Aligned_cols=93 Identities=24% Similarity=0.282 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE-c
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS-N 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS-E 1503 (1662)
...++||||+|.|.++..++.. .++|+++|+|. |... ++..|+ +++ +..++. ..+.+||+|.| +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~r----L~~kg~----~vl--~~~~w~---~~~~~fDvIscLN 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWR----LSKKGF----TVL--DIDDWQ---QTDFKFDVISCLN 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHH----HHhCCC----eEE--ehhhhh---ccCCceEEEeehh
Confidence 5678999999999999999987 77999999996 7444 444454 233 233332 12368999999 5
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+..+.. ...+|..+++.|+|+|++|...
T Consensus 160 vLDRc~~----P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 160 VLDRCDR----PLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred hhhccCC----HHHHHHHHHHHhCCCCEEEEEE
Confidence 5544443 4456677788999999998654
No 199
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.97 E-value=5.6e-05 Score=93.56 Aligned_cols=108 Identities=17% Similarity=0.121 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-------------------------------------------CCEEEEEechH-HH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-------------------------------------------AKHVISVDCSV-IT 1461 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-------------------------------------------AKKVTGVDISp-ML 1461 (1662)
++..++|.+||+|.+.+.+|... ..+++|+|+++ ++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46799999999999988887631 12699999997 99
Q ss_pred HHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhh-hChHHHHHHHHHHHHhcc---cCCeEEEe
Q psy1769 1462 QLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHV-LYLDSLINAVVYARDRFL---KPHGLILP 1534 (1662)
Q Consensus 1462 EiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~-Ld~EdmLEaLLrALrRLL---KPGGrLIP 1534 (1662)
+.|++++..+|+.+.|.|.++|+.++. .+...++||+||+++.... +..+..+..+...+.+.| .+|+.+++
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~-~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLK-NPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcc-cccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999999999888999999999875 3322357999999875432 222222333333333333 37766543
No 200
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.86 E-value=2.9e-05 Score=81.83 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=55.9
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCc-eeEEEEcCc
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIEN-VDIIVSNWM 1505 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDES-FDVVISE~V 1505 (1662)
.|||+.||.|..++.+|+. +.+|+|||+++ .++.|+.+++-.|+.++|+|+++|+.++. -...... +|+|++.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~-~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL-KRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG-GGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH-hhccccccccEEEECCC
Confidence 6999999999999999998 66899999997 89999999999999999999999998874 1111122 899998653
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=5.9e-05 Score=84.51 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=64.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCC--ceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIE--NVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDE--SFDVVIS 1502 (1662)
++..|||||+|.|.++..+++.+. +|+|+|+++ +++..++.+. ..++++++.+|+..++ ++ . .++.||+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d-~~---~l~~~~~vVa 101 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFD-FP---SLAQPYKVVA 101 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCc-ch---hhcCCCEEEE
Confidence 678999999999999999999955 799999997 8888887764 3467999999999987 55 3 6899999
Q ss_pred cCchhhh
Q psy1769 1503 NWMGHVL 1509 (1662)
Q Consensus 1503 E~VgH~L 1509 (1662)
+...++.
T Consensus 102 NlPY~Is 108 (259)
T COG0030 102 NLPYNIS 108 (259)
T ss_pred cCCCccc
Confidence 9876665
No 202
>KOG3420|consensus
Probab=97.84 E-value=1.6e-05 Score=83.60 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.++++|+|+|||+|.++..++-.+...|+|+|+.+ +++.+.+++.+..+ ++.++++|+.++. +..+.||.+|.+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle---~~~g~fDtaviN 121 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLE---LKGGIFDTAVIN 121 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchh---ccCCeEeeEEec
Confidence 38899999999999999888777888999999997 99999999988666 4799999999875 335889999997
Q ss_pred Cch
Q psy1769 1504 WMG 1506 (1662)
Q Consensus 1504 ~Vg 1506 (1662)
+.+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 744
No 203
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.82 E-value=0.00016 Score=84.80 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCC------C----------------------------------EEEEEechH-HHHHH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGA------K----------------------------------HVISVDCSV-ITQLT 1464 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGA------K----------------------------------KVTGVDISp-MLEiA 1464 (1662)
++..++|-=||+|.+.+.+|..+. . .++|+|+++ +++.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 557899999999999999988742 1 378999997 99999
Q ss_pred HHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchhhh-C----hHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1465 QEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVL-Y----LDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1465 RENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~L-d----~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+.+++..|+.+.|+|.++|+..+. -++ +.+|+|||++....- . .+.+...+...+++.++--+++|+...
T Consensus 271 k~NA~~AGv~d~I~f~~~d~~~l~-~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 271 KANARAAGVGDLIEFKQADATDLK-EPL--EEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHhcCCCceEEEEEcchhhCC-CCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999999999999999999999976 332 689999998854322 1 122445555566677777777775543
No 204
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.78 E-value=0.00028 Score=75.37 Aligned_cols=97 Identities=26% Similarity=0.340 Sum_probs=71.7
Q ss_pred EEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1429 IVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
+|||||+|.|.-++.+|-. ...+|+.+|... -+...+..+...++. +++++++++++.. . ...||+|++-.+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~-~---~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPE-Y---RESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTT-T---TT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccc-c---CCCccEEEeehhc
Confidence 7999999999988887776 455899999995 566666666777885 6999999999821 2 3799999997664
Q ss_pred hhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1507 HVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1507 H~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
.. ..++.-+..+|++||.+++..+
T Consensus 126 ~l-------~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 126 PL-------DKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp SH-------HHHHHHHGGGEEEEEEEEEEES
T ss_pred CH-------HHHHHHHHHhcCCCCEEEEEcC
Confidence 32 3344555789999999985544
No 205
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.77 E-value=0.00015 Score=81.58 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCcH----HHHHHHHhC------CCEEEEEechH-HHHHHHHHHHh-----cC-----------------
Q psy1769 1426 KDKIVLEVGCGMGL----LSLFCAEAG------AKHVISVDCSV-ITQLTQEVVEE-----ND----------------- 1472 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl----LSL~LARAG------AKKVTGVDISp-MLEiARENAre-----NG----------------- 1472 (1662)
...+||.+||+||- +++.+++.+ .-+|+|+|++. +++.|++-+=. .+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 35689999999994 677777763 24799999996 88888643211 11
Q ss_pred ------CCCcEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1473 ------CSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1473 ------LeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+...|.|...|+.... . ..+.||+|+|-.+.-+++ +.....++..++..|+|||+|+...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~-~--~~~~fD~IfCRNVLIYFd-~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDS-P--FLGKFDLIFCRNVLIYFD-EETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCc-c--ccCCCCEEEEcceEEeeC-HHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1235677777776543 1 247899999955555554 4466677888899999999998553
No 206
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00024 Score=81.95 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHhC---CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCcee
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEAG---AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARAG---AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
...++.+|||+.++.|.=+..+|+.. ...|+|+|+++ =+...+++++..|+.+ +.++..|...+.......++||
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD 231 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFD 231 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCc
Confidence 34488999999999999888887762 23579999997 7888999999999875 7888888765432222223699
Q ss_pred EEEEcCchhhh-------------------ChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1499 IIVSNWMGHVL-------------------YLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1499 VVISE~VgH~L-------------------d~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
.|+.+...... ........+|.+..++|||||+|+.+.|++.
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 99986543321 1122355677888899999999998887754
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.73 E-value=0.00018 Score=77.94 Aligned_cols=96 Identities=26% Similarity=0.303 Sum_probs=68.2
Q ss_pred EEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCchh
Q psy1769 1430 VLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGH 1507 (1662)
Q Consensus 1430 VLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~VgH 1507 (1662)
|+||||-.|.++..|++.| +.+|+++|+++ -++.|++++...++.++|+++.+|-.+. ++. .+..|+||...|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~--l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV--LKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc--cCC-CCCCCEEEEecCCH
Confidence 6899999999999999997 56799999997 8999999999999999999999997654 221 13389988877766
Q ss_pred hhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1508 VLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1508 ~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.+ +..++.+....++....||
T Consensus 78 ~l-----I~~ILe~~~~~~~~~~~lI 98 (205)
T PF04816_consen 78 EL-----IIEILEAGPEKLSSAKRLI 98 (205)
T ss_dssp HH-----HHHHHHHTGGGGTT--EEE
T ss_pred HH-----HHHHHHhhHHHhccCCeEE
Confidence 54 4555566556665555555
No 208
>PRK00536 speE spermidine synthase; Provisional
Probab=97.71 E-value=0.00015 Score=81.38 Aligned_cols=102 Identities=19% Similarity=0.007 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc--CC-CCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN--DC-SDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreN--GL-eDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.+++||-||.|-|..++.+++.. .+|+.||+++ +++.+++.+... ++ ..|++++.. +.+ . ..++|||||
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~---~--~~~~fDVII 144 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD---L--DIKKYDLII 144 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh---c--cCCcCCEEE
Confidence 57899999999999999999985 4999999997 899999865431 12 256777752 211 1 136899999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCV 1542 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLA 1542 (1662)
++.+ +.. .+.+.+++.|+|||+++......++.
T Consensus 145 vDs~----~~~----~fy~~~~~~L~~~Gi~v~Qs~sp~~~ 177 (262)
T PRK00536 145 CLQE----PDI----HKIDGLKRMLKEDGVFISVAKHPLLE 177 (262)
T ss_pred EcCC----CCh----HHHHHHHHhcCCCcEEEECCCCcccC
Confidence 9854 222 33455679999999999877665543
No 209
>KOG2940|consensus
Probab=97.71 E-value=4.1e-05 Score=85.11 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=77.4
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
..++|||||.|.+...+...+..+++-+|.|. |++.++.. +.+++ .+..+.+|-+. |+|.+.++|+||+.+..
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~---Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEF---LDFKENSVDLIISSLSL 147 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhc---ccccccchhhhhhhhhh
Confidence 47899999999999999998999999999995 99888753 34444 25667777766 45778999999998877
Q ss_pred hhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1507 HVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1507 H~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|... .+...+..+...|||+|.||-+
T Consensus 148 HW~N---dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 148 HWTN---DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhc---cCchHHHHHHHhcCCCccchhH
Confidence 7652 3444456677899999998743
No 210
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.69 E-value=4.9e-05 Score=77.97 Aligned_cols=97 Identities=25% Similarity=0.329 Sum_probs=59.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccc------c-CCCCCCc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDID------R-LPHGIEN 1496 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLe------s-LPFEDES 1496 (1662)
.+.+||||||++|.++..+++.+ ..+|+|+|+.++ ..+ ..+.++++|+.+.. . ++...++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 45899999999999999999997 579999999874 111 24666666665432 0 1111268
Q ss_pred eeEEEEcCchhhh-----Ch---HHHHHHHHHHHHhcccCCeEEE
Q psy1769 1497 VDIIVSNWMGHVL-----YL---DSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1497 FDVVISE~VgH~L-----d~---EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+|+|+|+...... +. ..+....+..+..+|++||.+|
T Consensus 92 ~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v 136 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFV 136 (181)
T ss_dssp ESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred cceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEE
Confidence 9999997722211 11 1122222333447899999877
No 211
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.67 E-value=0.00011 Score=80.15 Aligned_cols=75 Identities=24% Similarity=0.338 Sum_probs=62.1
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
..+++|||+|+|+|+.++.++++|++.|+++|+.+ ....++-+++.|+.. |.|...|+.. . ...||+|++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g-~-----~~~~Dl~Lag 149 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG-S-----PPAFDLLLAG 149 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC-C-----CcceeEEEee
Confidence 38999999999999999999999999999999998 667778888888864 8888877754 2 3689999994
Q ss_pred Cchh
Q psy1769 1504 WMGH 1507 (1662)
Q Consensus 1504 ~VgH 1507 (1662)
-+.+
T Consensus 150 Dlfy 153 (218)
T COG3897 150 DLFY 153 (218)
T ss_pred ceec
Confidence 4333
No 212
>KOG2187|consensus
Probab=97.66 E-value=6.9e-05 Score=90.00 Aligned_cols=105 Identities=23% Similarity=0.215 Sum_probs=74.4
Q ss_pred HhhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc
Q psy1769 1393 TTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN 1471 (1662)
Q Consensus 1393 EMLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreN 1471 (1662)
.+..+....+.+...|.++..+- .++.+||+.||||.+++.+|+. +++|+|||+++ .++.|++++..|
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~----------~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~N 428 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLP----------ADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQIN 428 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCC----------CCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhc
Confidence 33334444455555565443333 6789999999999999999994 88999999997 999999999999
Q ss_pred CCCCcEEEEEcccccccc-C-CCCCCcee-EEEEcCchhhh
Q psy1769 1472 DCSDVITVICRRMEDIDR-L-PHGIENVD-IIVSNWMGHVL 1509 (1662)
Q Consensus 1472 GLeDRVEFIqGDAEDLes-L-PFEDESFD-VVISE~VgH~L 1509 (1662)
|+. +++|+++-++++-. + ......-+ ++|.+.....+
T Consensus 429 gis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Gl 468 (534)
T KOG2187|consen 429 GIS-NATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGL 468 (534)
T ss_pred Ccc-ceeeeecchhhccchhcccCCCCCceEEEECCCcccc
Confidence 996 69999998777531 1 00012335 55666655444
No 213
>PRK04148 hypothetical protein; Provisional
Probab=97.63 E-value=0.00036 Score=72.03 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=52.1
Q ss_pred CCCEEEEECCCCcH-HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGL-LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl-LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+.+|||||||+|. ++..|++.|. .|+|+|+++ .++.|++. .+.++.+|+.+.. +. --+.+|+|.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~-~~-~y~~a~liys 83 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPN-LE-IYKNAKLIYS 83 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh--------CCeEEECcCCCCC-HH-HHhcCCEEEE
Confidence 45789999999996 9999999887 899999997 66666654 2678999998754 21 1357999998
No 214
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.62 E-value=0.00021 Score=85.79 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
....+||||||.|.+...+|.. .-..++|||+.. .+..|.+.+...++. ++.+++.|+..+. --+..+++|.|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~-~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLIL-NDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHH-HhcCcccccEEEEE
Confidence 4678999999999999999887 345799999995 666666666777774 6889998886543 12336789999986
Q ss_pred CchhhhC-----hHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1504 WMGHVLY-----LDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1504 ~VgH~Ld-----~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...-... ..-.-..++..+.++|+|||.|.+.
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 5443321 1112345566778999999998744
No 215
>KOG1663|consensus
Probab=97.59 E-value=0.00059 Score=75.90 Aligned_cols=110 Identities=20% Similarity=0.137 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cC--CCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RL--PHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sL--PFEDESFDV 1499 (1662)
.++++||||.=||.-++.+|.+ .-.+|+++|+++ ..+.+.+..+..+...+|+++++++.+.. ++ ..+.+.||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 6889999999999988887776 235899999996 88999999999999999999999887632 11 112478999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeE
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYC 1541 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYL 1541 (1662)
++.+.- -.... ..+..+.++||+||+|++...-+..
T Consensus 153 aFvDad-----K~nY~-~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 153 AFVDAD-----KDNYS-NYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred EEEccc-----hHHHH-HHHHHHHhhcccccEEEEeccccCC
Confidence 999531 11122 3344555999999999977654444
No 216
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.54 E-value=0.00026 Score=76.13 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCC--CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc--CCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGA--KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR--LPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGA--KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes--LPFEDESFDVV 1500 (1662)
.+.-|||+|.|||.++..+++.|. ..++++|.++ ++....+... .+.++.+|+.++.. -.+.+..||.|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHHhhcCCCeeeeE
Confidence 577899999999999999999973 5799999996 7666665532 36789999987651 12235689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||.+..-.++...-+ ++++.+...|..||.++-..
T Consensus 122 iS~lPll~~P~~~~i-aile~~~~rl~~gg~lvqft 156 (194)
T COG3963 122 ISGLPLLNFPMHRRI-AILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred EeccccccCcHHHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 997654444444333 45577778899999988443
No 217
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.49 E-value=7.9e-05 Score=89.37 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=63.9
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEec---hH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDC---SV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDI---Sp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
..+||||||+|.++..++..+.. +..+-. .+ .++.|.+ .|+..-+ +-+..- +|||.+..||+|.|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfale----RGvpa~~----~~~~s~-rLPfp~~~fDmvHcs 188 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALE----RGVPAMI----GVLGSQ-RLPFPSNAFDMVHCS 188 (506)
T ss_pred EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhh----cCcchhh----hhhccc-cccCCccchhhhhcc
Confidence 57999999999999999998652 222222 22 3444443 3443211 111111 277889999999993
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
-... .+...-..+|-++.|+|+|||+++.+...++
T Consensus 189 rc~i--~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 189 RCLI--PWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cccc--cchhcccceeehhhhhhccCceEEecCCccc
Confidence 3211 1222223466778999999999998877776
No 218
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.47 E-value=0.00052 Score=76.05 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--------CCCEEEEEechH-HHHHHHHHHHhcCCCCc-EEEEEccccccccCCCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--------GAKHVISVDCSV-ITQLTQEVVEENDCSDV-ITVICRRMEDIDRLPHGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--------GAKKVTGVDISp-MLEiARENAreNGLeDR-VEFIqGDAEDLesLPFEDE 1495 (1662)
.+.+|||-+||+|.+...+.+. ....++|+|+++ ++..|+.++...+.... ..+..+|..... ......
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~-~~~~~~ 124 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLEND-KFIKNQ 124 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSH-SCTST-
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccc-cccccc
Confidence 5678999999999998888762 345899999997 77888877665554432 457888876543 211136
Q ss_pred ceeEEEEcCchhhh--Ch----------------HHHHHHHHHHHHhcccCCeEEE
Q psy1769 1496 NVDIIVSNWMGHVL--YL----------------DSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1496 SFDVVISE~VgH~L--d~----------------EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.||+||+++..... .. ...--.++..+.+.|++||++.
T Consensus 125 ~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~ 180 (311)
T PF02384_consen 125 KFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAA 180 (311)
T ss_dssp -EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEE
T ss_pred ccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccccccee
Confidence 89999997744322 00 0011124455568999999865
No 219
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.44 E-value=4.7e-05 Score=71.78 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=43.1
Q ss_pred EEECCCCcHHHHHHHHh----CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEcCc
Q psy1769 1431 LEVGCGMGLLSLFCAEA----GAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1431 LDIGCGTGlLSL~LARA----GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE~V 1505 (1662)
||||+..|..++.+++. +..+++++|..+..+.+++.++..++..+++++.++..+.. .++ .+++|+|+.+.-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~--~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP--DGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHH--H--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--CCCEEEEEECCC
Confidence 69999999988777764 22379999998744556666666677778999999997752 122 368999999763
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
... +..+.. +..+.+.|+|||+++++.
T Consensus 79 H~~---~~~~~d-l~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSY---EAVLRD-LENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H---HHHHHH-HHHHGGGEEEEEEEEEE-
T ss_pred CCH---HHHHHH-HHHHHHHcCCCeEEEEeC
Confidence 222 233333 356678999999999765
No 220
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.42 E-value=0.00022 Score=81.18 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-CCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-LPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-LPFEDESFDVVI 1501 (1662)
++..+||++||.|..+..+++.. ..+|+|+|.++ +++.|++.+.. .+++++++++..++.. ++....++|.|+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~~~~~vDgIl 95 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAEGLGKVDGIL 95 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHcCCCccCEEE
Confidence 67899999999999999999983 36899999997 99999988754 3689999999988642 221112799999
Q ss_pred EcC
Q psy1769 1502 SNW 1504 (1662)
Q Consensus 1502 SE~ 1504 (1662)
+++
T Consensus 96 ~DL 98 (296)
T PRK00050 96 LDL 98 (296)
T ss_pred ECC
Confidence 865
No 221
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.42 E-value=0.0018 Score=73.29 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh----cC---------------------------
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE----ND--------------------------- 1472 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre----NG--------------------------- 1472 (1662)
....+||--|||.|.|+..+|..|. .|.|.|.|- |+-...-.+.. +.
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 3567899999999999999999998 799999996 65444433221 00
Q ss_pred --------CCCcEEEEEccccccccCC-CCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1473 --------CSDVITVICRRMEDIDRLP-HGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1473 --------LeDRVEFIqGDAEDLesLP-FEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
...++.+..||..++- .+ ...++||+|+... +++...-+-..++.+.++|||||+.|
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y-~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVY-GPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred cCcccccCCCCceeEecCccEEec-CCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEE
Confidence 0124556666666653 11 0136899999853 34444444556688899999999776
No 222
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.41 E-value=0.00091 Score=73.65 Aligned_cols=87 Identities=22% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCC-CCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPH-GIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPF-EDESFDVVISE 1503 (1662)
++..|||||+|.|.++..+++.+ ++|+++|+++ +++..++.+. ...+++++.+|+.++. ++. ......+|+++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~-~~~~~~~~~~~vv~N 104 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWD-LYDLLKNQPLLVVGN 104 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSC-GGGHCSSSEEEEEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccc-cHHhhcCCceEEEEE
Confidence 68899999999999999999997 7999999997 8888887654 2357999999999876 431 01356788887
Q ss_pred CchhhhChHHHHHHHH
Q psy1769 1504 WMGHVLYLDSLINAVV 1519 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLL 1519 (1662)
+..+.. ..++..++
T Consensus 105 lPy~is--~~il~~ll 118 (262)
T PF00398_consen 105 LPYNIS--SPILRKLL 118 (262)
T ss_dssp ETGTGH--HHHHHHHH
T ss_pred ecccch--HHHHHHHh
Confidence 665332 33444443
No 223
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.38 E-value=0.00082 Score=72.93 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCEEEEECCCCcHHHHHHHH-hCCCEEEEEechH-HHHHHHHH-------HHhcCC-CCcEEEEEccccccccCCCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE-AGAKHVISVDCSV-ITQLTQEV-------VEENDC-SDVITVICRRMEDIDRLPHGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR-AGAKKVTGVDISp-MLEiAREN-------AreNGL-eDRVEFIqGDAEDLesLPFEDE 1495 (1662)
++.+.+|||||.|.+.+.+|- .++++++|||+.+ ..+.|+.. ++..+. ...+++..+|+.+.+.....-.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s 121 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIWS 121 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHGH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhhc
Confidence 678999999999998776664 4888999999996 44444432 222333 2568888998866430000003
Q ss_pred ceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1496 NVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1496 SFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
..|+|+++... ..+.+...+ ..+...||+|.+||
T Consensus 122 ~AdvVf~Nn~~---F~~~l~~~L-~~~~~~lk~G~~II 155 (205)
T PF08123_consen 122 DADVVFVNNTC---FDPDLNLAL-AELLLELKPGARII 155 (205)
T ss_dssp C-SEEEE--TT---T-HHHHHHH-HHHHTTS-TT-EEE
T ss_pred CCCEEEEeccc---cCHHHHHHH-HHHHhcCCCCCEEE
Confidence 57999996542 233455555 44557789999987
No 224
>KOG2915|consensus
Probab=97.35 E-value=0.0014 Score=74.76 Aligned_cols=100 Identities=22% Similarity=0.230 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++.+|||-|.|+|.++..++++ .-.+++..|+.+ -.+.|++-+++.++.+++++.+.|+.... +......+|+|+
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~G-F~~ks~~aDaVF 182 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSG-FLIKSLKADAVF 182 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCC-ccccccccceEE
Confidence 48999999999999999999997 347899999997 78999999999999999999999998865 443457899999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCe-EEE
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHG-LIL 1533 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGG-rLI 1533 (1662)
.++..- |+ .+..+ ...||.+| +|+
T Consensus 183 LDlPaP---w~-AiPha----~~~lk~~g~r~c 207 (314)
T KOG2915|consen 183 LDLPAP---WE-AIPHA----AKILKDEGGRLC 207 (314)
T ss_pred EcCCCh---hh-hhhhh----HHHhhhcCceEE
Confidence 976532 22 22222 24677666 554
No 225
>KOG1661|consensus
Probab=97.29 E-value=0.00088 Score=74.08 Aligned_cols=96 Identities=19% Similarity=0.252 Sum_probs=69.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CC--CEEEEEechH-HHHHHHHHHHhcC--------C-CCcEEEEEccccccccCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GA--KHVISVDCSV-ITQLTQEVVEEND--------C-SDVITVICRRMEDIDRLPH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GA--KKVTGVDISp-MLEiARENAreNG--------L-eDRVEFIqGDAEDLesLPF 1492 (1662)
++...||||.|+|.|+..+++. |+ ..++|||.-+ +++.+++++...- + ..++.|+.+|..... .
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~---~ 158 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY---A 158 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC---C
Confidence 8899999999999999999875 32 2348999886 9999999886532 1 246888999998864 2
Q ss_pred CCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1493 EDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+..+||.|.+..... +..+.++ ..|++||+++
T Consensus 159 e~a~YDaIhvGAaa~-----~~pq~l~----dqL~~gGrll 190 (237)
T KOG1661|consen 159 EQAPYDAIHVGAAAS-----ELPQELL----DQLKPGGRLL 190 (237)
T ss_pred ccCCcceEEEccCcc-----ccHHHHH----HhhccCCeEE
Confidence 357999999953222 2233443 5678888776
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.28 E-value=0.0011 Score=74.43 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=65.8
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCC---------------------------CCc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDC---------------------------SDV 1476 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGL---------------------------eDR 1476 (1662)
.++.++||||||.-+.-...|..-+..|+..|..+ -++..++-++..+- ...
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 36779999999996665555544577899999885 44433333222110 012
Q ss_pred E-EEEEccccccccCCC---CCCceeEEEEcC-chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1477 I-TVICRRMEDIDRLPH---GIENVDIIVSNW-MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1477 V-EFIqGDAEDLesLPF---EDESFDVVISE~-VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
| .++..|+.+...++. ...+||+|++.+ +.......+.....+..+.++|||||.||..
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 377788877543321 013599999965 4444444555666778899999999999854
No 227
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0013 Score=73.65 Aligned_cols=96 Identities=22% Similarity=0.236 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHH-HHHHHHHhcCCCCcEE-EEEccccccccCCCCCCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQ-LTQEVVEENDCSDVIT-VICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLE-iARENAreNGLeDRVE-FIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.++++|||||+-||.++..+++.||++|+|+|+.- .+. ..|. ..+|. +...++..+..-.+ .+..|+|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~-------d~rV~~~E~tN~r~l~~~~~-~~~~d~~v 149 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN-------DPRVIVLERTNVRYLTPEDF-TEKPDLIV 149 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc-------CCcEEEEecCChhhCCHHHc-ccCCCeEE
Confidence 38899999999999999999999999999999984 332 2221 12343 44455655431111 24789999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
|+..+-. +..+|..+..+|+++|.+++
T Consensus 150 ~DvSFIS------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 150 IDVSFIS------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred EEeehhh------HHHHHHHHHHhcCCCceEEE
Confidence 9764322 34455666789999998773
No 228
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.23 E-value=0.00092 Score=75.06 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-CCCCCCceeEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-LPHGIENVDII 1500 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-LPFEDESFDVV 1500 (1662)
.++..|||++||.|.=+..++.. +...|+|+|++. -+...+++++..|+. .+.++..|...... .+ ...||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~--~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKP--ESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHH--TTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccccc--ccccchh
Confidence 37889999999999988888876 256899999996 778888888888875 58888788877620 11 2469999
Q ss_pred EEcCchhhh-------------------ChHHHHHHHHHHHHhcc----cCCeEEEeecCcee
Q psy1769 1501 VSNWMGHVL-------------------YLDSLINAVVYARDRFL----KPHGLILPDRAELY 1540 (1662)
Q Consensus 1501 ISE~VgH~L-------------------d~EdmLEaLLrALrRLL----KPGGrLIPSsATLY 1540 (1662)
+.+...... ........+|....++| +|||+++.+.|++.
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 986533221 11123456778888999 99999998877654
No 229
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.22 E-value=0.00046 Score=76.03 Aligned_cols=87 Identities=23% Similarity=0.281 Sum_probs=50.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
+..+|.|+|||.+.++..+.. +. +|...|+-. .+ + .++.+|+..++ |+ ++.+|++|+.+.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva----------~n---~--~Vtacdia~vP-L~--~~svDv~VfcLS 131 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVA----------PN---P--RVTACDIANVP-LE--DESVDVAVFCLS 131 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------SS---T--TEEES-TTS-S-----TT-EEEEEEES-
T ss_pred CCEEEEECCCchHHHHHhccc-Cc-eEEEeeccC----------CC---C--CEEEecCccCc-CC--CCceeEEEEEhh
Confidence 456899999999999865432 23 699999864 11 1 26778998865 54 899999998665
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+....+. .++.+..|+||+||.|.+.+
T Consensus 132 LMGTn~~----~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 132 LMGTNWP----DFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp --SS-HH----HHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCCcH----HHHHHHHheeccCcEEEEEE
Confidence 5555433 33455569999999997444
No 230
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.19 E-value=0.0021 Score=70.80 Aligned_cols=95 Identities=22% Similarity=0.256 Sum_probs=69.4
Q ss_pred CCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCc-eeEEEEc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIEN-VDIIVSN 1503 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDES-FDVVISE 1503 (1662)
+.+|+|||+|.|.-++.+|-. ...+|+-+|... -+...++...+.++. +++++++.++++. .. .. ||+|+|-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~-~~---~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFG-QE---KKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcc-cc---cccCcEEEee
Confidence 689999999999988887743 334699999984 455555556666774 6999999999975 11 23 9999996
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.+... ..+..-+..+|++||.++
T Consensus 143 Ava~L-------~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 143 AVASL-------NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred hccch-------HHHHHHHHHhcccCCcch
Confidence 65432 333444568899999875
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.19 E-value=0.001 Score=65.20 Aligned_cols=57 Identities=26% Similarity=0.428 Sum_probs=49.2
Q ss_pred EEEEECCCCcHHHHHHHHhCCC-EEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAK-HVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED 1486 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAK-KVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED 1486 (1662)
+|||||||.|.+++.+++.+.. +|+++|.++ +++.++++++.+++. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 4899999999999999998653 899999997 999999999988875 48888877665
No 232
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.16 E-value=0.0018 Score=77.60 Aligned_cols=81 Identities=16% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC---------CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC--CCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG---------AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL--PHG 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG---------AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL--PFE 1493 (1662)
...+|||.|||+|.+...++... ...++|+|+++ ++..|+.++...+. ..+.+.+.|......+ ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc
Confidence 35689999999999988887642 14689999997 88889888776541 1245555554332100 111
Q ss_pred CCceeEEEEcCchh
Q psy1769 1494 IENVDIIVSNWMGH 1507 (1662)
Q Consensus 1494 DESFDVVISE~VgH 1507 (1662)
.+.||+||+++..-
T Consensus 110 ~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 110 LDLFDIVITNPPYG 123 (524)
T ss_pred cCcccEEEeCCCcc
Confidence 25899999987443
No 233
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.15 E-value=0.0013 Score=76.66 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.++++||||||++|.++..+++.|+ +|+|||..+|.... .. ..+|..+.+|...+. | ..+.+|+|+|++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l~~~L----~~---~~~V~h~~~d~fr~~--p-~~~~vDwvVcDm 278 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPMAQSL----MD---TGQVEHLRADGFKFR--P-PRKNVDWLVCDM 278 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhcCHhh----hC---CCCEEEEeccCcccC--C-CCCCCCEEEEec
Confidence 4789999999999999999999988 89999988754332 22 246899998887764 2 147899999987
Q ss_pred chhhhChHHHHHHHHHHHHhcccCC
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPH 1529 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPG 1529 (1662)
+..- .. ++.-+.++|..|
T Consensus 279 ve~P---~r----va~lm~~Wl~~g 296 (357)
T PRK11760 279 VEKP---AR----VAELMAQWLVNG 296 (357)
T ss_pred ccCH---HH----HHHHHHHHHhcC
Confidence 6442 22 223345667665
No 234
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0047 Score=67.86 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCC--CEEEEEechHHHHHHHHHHHhcCCCCcEEEEEcccccccc---C--CCCCCcee
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGA--KHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR---L--PHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGA--KKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLes---L--PFEDESFD 1498 (1662)
++.+|+||||-.|.|+..+++... ..|+|||+.+|- .+. .|.++++|+++-.. + ......+|
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~-~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIP-GVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCC-CceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 679999999999999999999732 249999998731 122 38999999987531 0 11134579
Q ss_pred EEEEcCch--------hhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1499 IIVSNWMG--------HVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1499 VVISE~Vg--------H~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+|++++.- ++.....+...++.-...+|+|||.++
T Consensus 114 vV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv 156 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFV 156 (205)
T ss_pred eEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEE
Confidence 99996533 111122233344445567999999987
No 235
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.12 E-value=0.0027 Score=71.04 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=61.1
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
...+.+|||+|||.|..+..+... ...+++++|.|+ |++.++..+..........+......+. .++ ...|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~--~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF--LPF--PPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc--ccC--CCCcEE
Confidence 347789999999999866555543 466899999997 9999988776432211111111111111 111 234999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccC
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKP 1528 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKP 1528 (1662)
|+..++.-+.. .....+++.+-..+.+
T Consensus 107 i~s~~L~EL~~-~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 107 IASYVLNELPS-AARAELVRSLWNKTAP 133 (274)
T ss_pred EEehhhhcCCc-hHHHHHHHHHHHhccC
Confidence 99776666655 4555566665555555
No 236
>KOG3045|consensus
Probab=97.09 E-value=0.00086 Score=75.98 Aligned_cols=84 Identities=25% Similarity=0.323 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
...+|.|+|||-+.++. .. ...|+..|+.+ -+-+++.+|+.+++ + +++++||+|+.+.
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vP-l--~d~svDvaV~CLS 237 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVP-L--EDESVDVAVFCLS 237 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCc-C--ccCcccEEEeeHh
Confidence 45689999999988766 22 34699999754 12356788999865 4 4899999888544
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.... +..++.++.|+|++||.+.+.
T Consensus 238 LMgtn----~~df~kEa~RiLk~gG~l~IA 263 (325)
T KOG3045|consen 238 LMGTN----LADFIKEANRILKPGGLLYIA 263 (325)
T ss_pred hhccc----HHHHHHHHHHHhccCceEEEE
Confidence 33332 344556778999999998643
No 237
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.03 E-value=0.0026 Score=73.02 Aligned_cols=83 Identities=20% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCEEEEECCCCc-HHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhc-CCCCcEEEEEcccccc--ccCCCCCCceeEE
Q psy1769 1427 DKIVLEVGCGMG-LLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEN-DCSDVITVICRRMEDI--DRLPHGIENVDII 1500 (1662)
Q Consensus 1427 GKRVLDIGCGTG-lLSL~LARA-GAKKVTGVDISp-MLEiARENAreN-GLeDRVEFIqGDAEDL--esLPFEDESFDVV 1500 (1662)
..++||||||.. +..+..++. |. +++|+|+++ .++.|++++..| ++.++|+++...-... ..+....+.||++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 568999999986 445555554 55 899999997 999999999999 9999999987643321 1122224689999
Q ss_pred EEcCchhhhC
Q psy1769 1501 VSNWMGHVLY 1510 (1662)
Q Consensus 1501 ISE~VgH~Ld 1510 (1662)
+|++.+|.-.
T Consensus 182 mCNPPFy~s~ 191 (299)
T PF05971_consen 182 MCNPPFYSSQ 191 (299)
T ss_dssp EE-----SS-
T ss_pred ecCCccccCh
Confidence 9999877653
No 238
>KOG2730|consensus
Probab=97.03 E-value=0.0004 Score=77.13 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVISE 1503 (1662)
...+|+|.-||.|.-+..+|..++ .|++||+++ -+..|+.+++-.|++++|+|++||+.++. .+.+....+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 456799999999998888888766 799999998 79999999999999999999999998864 233334557788875
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.-... +.+..-+..+...+.|.|.-+
T Consensus 173 ppwggp---~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 173 PPWGGP---SYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred CCCCCc---chhhhhhhhhhhhcchhHHHH
Confidence 432222 222222334456666665433
No 239
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.00 E-value=0.0083 Score=60.60 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=56.8
Q ss_pred CCCEEEEECCCCcHHHHHHHH-----hCCCEEEEEechH-HHHHHHHHHHhcC--CCCcEEEEEccccccccCCCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE-----AGAKHVISVDCSV-ITQLTQEVVEEND--CSDVITVICRRMEDIDRLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR-----AGAKKVTGVDISp-MLEiARENAreNG--LeDRVEFIqGDAEDLesLPFEDESF 1497 (1662)
+...|+|+|||.|.+++.++. ....+|++||.++ +++.|.++.+..+ +..++.+..+++.+.. . ....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 100 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-S---SDPP 100 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-c---cCCC
Confidence 677999999999999999999 4345899999996 8888888887766 5456777777766542 1 2567
Q ss_pred eEEEE
Q psy1769 1498 DIIVS 1502 (1662)
Q Consensus 1498 DVVIS 1502 (1662)
+++++
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 78877
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.91 E-value=0.007 Score=68.89 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=62.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHH-hcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVE-ENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-G-AKKVTGVDISp-MLEiARENAr-eNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+.+|+=||||. -..++.+++. + ...|+++|+++ +++.|++.+. ..++..++.|+++|+.+.. .+-..||+|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~---~dl~~~DvV 196 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT---YDLKEYDVV 196 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG----GG----SEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc---cccccCCEE
Confidence 356999999997 4455666654 3 23799999997 8999998887 5678889999999998754 223589999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...+-..- ......++..+.+.++||+.|+..
T Consensus 197 ~lAalVg~~--~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 197 FLAALVGMD--AEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEhhhcccc--cchHHHHHHHHHhhCCCCcEEEEe
Confidence 885432211 123456778888999999999854
No 241
>KOG1269|consensus
Probab=96.90 E-value=0.0014 Score=76.78 Aligned_cols=104 Identities=21% Similarity=0.245 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE-c
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS-N 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS-E 1503 (1662)
++..++|+|||.|.....++..+...++|+|.++ -+..+........+.++..++.+|+.. .|+++..||.+.+ +
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~---~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK---MPFEDNTFDGVRFLE 186 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc---CCCCccccCcEEEEe
Confidence 5668999999999999999998767899999996 555555555555666666677777776 4577899999998 5
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.+.|....+ .++.++.|+|+|||+++...
T Consensus 187 ~~~~~~~~~----~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 187 VVCHAPDLE----KVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ecccCCcHH----HHHHHHhcccCCCceEEeHH
Confidence 566655444 44556679999999998543
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.87 E-value=0.0046 Score=72.77 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHH--HHh---cCC-CCcEEEEEccccccccCCCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEV--VEE---NDC-SDVITVICRRMEDIDRLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiAREN--Are---NGL-eDRVEFIqGDAEDLesLPFEDESF 1497 (1662)
.-.+||-+|.|.|...+.+.+.. ..+|+-||++| |++.++.+ ++. +.+ ..|++++..|+..+. ....+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl--r~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL--RTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH--Hhhcccc
Confidence 45689999999999999999985 88999999997 99999833 332 222 368999999998874 3334699
Q ss_pred eEEEEcCchhhhC--hHHHHHHHHHHHHhcccCCeEEEeecCceeEeecc
Q psy1769 1498 DIIVSNWMGHVLY--LDSLINAVVYARDRFLKPHGLILPDRAELYCVAAN 1545 (1662)
Q Consensus 1498 DVVISE~VgH~Ld--~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIE 1545 (1662)
|+||.+...--.+ ..-+-..+..-+.+.|+++|+++......|..|-.
T Consensus 367 D~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred cEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce
Confidence 9999966432221 11122334445578999999999887776666543
No 243
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.84 E-value=0.014 Score=67.36 Aligned_cols=107 Identities=17% Similarity=0.076 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh----C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEE--EEcccccccc-CCC--CC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA----G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITV--ICRRMEDIDR-LPH--GI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA----G-AKKVTGVDISp-MLEiARENAreNGLeDRVEF--IqGDAEDLes-LPF--ED 1494 (1662)
++..|+|+|||.|.-+..++++ + ...+++||+|. +++.+.+.+....++ .+++ +++|..+... ++. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHHHHHhhccccccc
Confidence 5568999999999865555443 1 34799999995 888888888733343 3444 7888766421 221 11
Q ss_pred CceeEEEE--cCchhhhChHHHHHHHHHHHHh-cccCCeEEEee
Q psy1769 1495 ENVDIIVS--NWMGHVLYLDSLINAVVYARDR-FLKPHGLILPD 1535 (1662)
Q Consensus 1495 ESFDVVIS--E~VgH~Ld~EdmLEaLLrALrR-LLKPGGrLIPS 1535 (1662)
....+|+. ..++.+. +++. ..+|..+++ .|+|||.|++.
T Consensus 155 ~~~r~~~flGSsiGNf~-~~ea-~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFS-RPEA-AAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCC-HHHH-HHHHHHHHHhhCCCCCEEEEe
Confidence 33566665 3454443 4433 456688888 99999998853
No 244
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.79 E-value=0.021 Score=63.90 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
..++.+||-+|+.+|.....++.. | -+.|+|||.|+ ..+..-..++.. .+|--+..|+........--+.+|+|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI 147 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVI 147 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEE
Confidence 347899999999999998888886 4 55899999996 333222333322 46888889987654222123589999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+++.... +..+.++.++..+||+||.+++.
T Consensus 148 ~~DVaQp-----~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 148 FQDVAQP-----DQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEE-SST-----THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EecCCCh-----HHHHHHHHHHHhhccCCcEEEEE
Confidence 9976522 33455667777899999998844
No 245
>KOG1331|consensus
Probab=96.75 E-value=0.0014 Score=74.87 Aligned_cols=95 Identities=22% Similarity=0.169 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.+..+||+|||.|-....- ....++++|++. ++..|++. + ...+..+|+.. +|+.+.+||.+++..
T Consensus 45 ~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~---~p~~~~s~d~~lsia 111 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALK---LPFREESFDAALSIA 111 (293)
T ss_pred CcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC----C---Cceeehhhhhc---CCCCCCccccchhhh
Confidence 4788999999998653322 223689999995 77766643 1 12567778877 456689999999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+.|++..+.....+++++.|.|+|||.++
T Consensus 112 vihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 112 VIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 88888877778888899999999999976
No 246
>PRK10742 putative methyltransferase; Provisional
Probab=96.75 E-value=0.006 Score=68.72 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=61.3
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc------C--CCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN------D--CSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreN------G--LeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
+|||+-+|+|..++.++..|+. |++||.++ +....++.++.. + +..+++++++|..++. ......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L--~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--TDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHH--hhCCCCCcE
Confidence 8999999999999999999995 99999997 666666666552 2 2257999999998873 212247999
Q ss_pred EEEcCchhhh
Q psy1769 1500 IVSNWMGHVL 1509 (1662)
Q Consensus 1500 VISE~VgH~L 1509 (1662)
|+.++++-.-
T Consensus 168 VYlDPMfp~~ 177 (250)
T PRK10742 168 VYLDPMFPHK 177 (250)
T ss_pred EEECCCCCCC
Confidence 9999886654
No 247
>KOG1709|consensus
Probab=96.75 E-value=0.025 Score=63.38 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=74.3
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC--CcEEEEEccccccc-cCCCCCCceeEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS--DVITVICRRMEDID-RLPHGIENVDII 1500 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe--DRVEFIqGDAEDLe-sLPFEDESFDVV 1500 (1662)
.++.+||+||-|.|++.-.+.++...+-+.||..+ ++...+ ..++. ++|.++.+..++.. .|+ ++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr----~~gw~ek~nViil~g~WeDvl~~L~--d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR----DWGWREKENVIILEGRWEDVLNTLP--DKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH----hcccccccceEEEecchHhhhcccc--ccCccee
Confidence 37899999999999999999988766777889987 665544 44553 57888888887764 244 6789999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+-+...-. .|+ +..+.+.+.|+|||+|++-+
T Consensus 174 ~yDTy~e~--yEd-l~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 174 YYDTYSEL--YED-LRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred EeechhhH--HHH-HHHHHHHHhhhcCCCceEEE
Confidence 98765222 233 34445667799999999863
No 248
>KOG3178|consensus
Probab=96.74 E-value=0.0042 Score=72.45 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEech-HHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDIS-pMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
-...+|+|.|.|.++..++.. +.+|-+++.. +.+..++..+. .| |+.+-+|+.+- .| +-|+|++-|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~--~P----~~daI~mkWi 245 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD--TP----KGDAIWMKWI 245 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc--CC----CcCeEEEEee
Confidence 367899999999999998884 6678999998 44444444433 33 77788888764 45 5689999999
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
.|.+.++++. .+|.++...|+|+|.||.-+.
T Consensus 246 LhdwtDedcv-kiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 246 LHDWTDEDCV-KILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cccCChHHHH-HHHHHHHHhCCCCCEEEEEec
Confidence 9998777665 566999999999999885543
No 249
>KOG3201|consensus
Probab=96.65 E-value=0.0014 Score=70.40 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=69.2
Q ss_pred CCCEEEEECCC-CcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCC--CcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCG-MGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCS--DVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCG-TGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLe--DRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+.+|||+|.| +|+.++++|.. ....|..+|-++ .++..++....|-.. .++.++.-+..... ...+...||+|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aq-sq~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQ-SQQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhH-HHHhhCcccEE
Confidence 56789999999 47888888875 456899999996 777777776655222 22322222222211 11123589999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+|. .++...+.-+.+.+.+.++|+|.|..++
T Consensus 108 laA---DClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 108 LAA---DCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred Eec---cchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 993 2233445667777888999999998663
No 250
>KOG2352|consensus
Probab=96.55 E-value=0.0095 Score=71.98 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.3
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHH-HhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVV-EENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENA-reNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
.++|-+|||.-.+...+-+.|...|+.+|+|+ .++.+...- +.. .-+.+...|+..+. |++++||+||....
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~---~~~~~~~~d~~~l~---fedESFdiVIdkGt 123 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER---PEMQMVEMDMDQLV---FEDESFDIVIDKGT 123 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC---cceEEEEecchhcc---CCCcceeEEEecCc
Confidence 38999999999999999999999999999997 444443332 222 34788899998854 66899999999553
Q ss_pred hhh-hChHH------HHHHHHHHHHhcccCCeEEE
Q psy1769 1506 GHV-LYLDS------LINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1506 gH~-Ld~Ed------mLEaLLrALrRLLKPGGrLI 1533 (1662)
++. +.++. .....+..+.|+|++||+++
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 333 32222 23456778899999999976
No 251
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.54 E-value=0.024 Score=63.31 Aligned_cols=95 Identities=19% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+.+++||||-.|.+...+.+.+ +..+++.|+++ .++.|.+++..+++.+++++..+|.... +. .+..+|+|+..
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~--l~-~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAV--LE-LEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccc--cC-ccCCcCEEEEe
Confidence 44569999999999999999975 67899999997 8999999999999999999999998553 22 13479999887
Q ss_pred CchhhhChHHHHHHHHHHHHhcccC
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKP 1528 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKP 1528 (1662)
.|+..+ +..++++....|+.
T Consensus 93 GMGG~l-----I~~ILee~~~~l~~ 112 (226)
T COG2384 93 GMGGTL-----IREILEEGKEKLKG 112 (226)
T ss_pred CCcHHH-----HHHHHHHhhhhhcC
Confidence 776654 44555555455543
No 252
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.96 E-value=0.049 Score=60.18 Aligned_cols=123 Identities=16% Similarity=0.208 Sum_probs=62.5
Q ss_pred hhcChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHh-----CCCEEEEEech-HHHHHHHHH
Q psy1769 1394 TYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA-----GAKHVISVDCS-VITQLTQEV 1467 (1662)
Q Consensus 1394 MLND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARA-----GAKKVTGVDIS-pMLEiAREN 1467 (1662)
+++.......|.+.|.+. ++..|+|+|.-.|.-++++|.. +.++|+|||+. .. ..++.
T Consensus 14 i~q~P~Dm~~~qeli~~~--------------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~--~~~~a 77 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL--------------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRP--HNRKA 77 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH----------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-G
T ss_pred hhcCHHHHHHHHHHHHHh--------------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcch--hchHH
Confidence 344455556777766632 6789999999998877766653 34699999996 21 12223
Q ss_pred HHhcCCCCcEEEEEcccccccc---CC--CCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1468 VEENDCSDVITVICRRMEDIDR---LP--HGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1468 AreNGLeDRVEFIqGDAEDLes---LP--FEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++...+..+|++++||..+.+. +. .......+||.+.-... +..+..+ .....+|++|+++|+..
T Consensus 78 ~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~---~hvl~eL-~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 78 IESHPMSPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTH---EHVLAEL-EAYAPLVSPGSYLIVED 147 (206)
T ss_dssp GGG----TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS-------SSHHHHH-HHHHHT--TT-EEEETS
T ss_pred HhhccccCceEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccH---HHHHHHH-HHhCccCCCCCEEEEEe
Confidence 3445666899999999876541 10 01134456766543221 1233333 45679999999998443
No 253
>KOG1122|consensus
Probab=95.93 E-value=0.046 Score=65.58 Aligned_cols=120 Identities=8% Similarity=0.020 Sum_probs=84.3
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.+.++.+|||+.|-.|.=+..+|.. +-..|+|.|.+. -+...+.++...|+. +..+...|..++.+-.+. ++||-
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~-~~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFP-GSFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccC-cccce
Confidence 3458999999999999866666664 455799999995 788888889888985 466777888765311122 38999
Q ss_pred EEEcCchhh--h-----------------ChHHHHHHHHHHHHhcccCCeEEEeecCceeEeec
Q psy1769 1500 IVSNWMGHV--L-----------------YLDSLINAVVYARDRFLKPHGLILPDRAELYCVAA 1544 (1662)
Q Consensus 1500 VISE~VgH~--L-----------------d~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPI 1544 (1662)
|+.+..... + ....+...++.....++++||+|+.+.|++...--
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~EN 379 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEEN 379 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhh
Confidence 998554433 1 11123445555566999999999988887654433
No 254
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.90 E-value=0.0089 Score=66.34 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=63.0
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCC-CCCceeEEEEcCc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH-GIENVDIIVSNWM 1505 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPF-EDESFDVVISE~V 1505 (1662)
..++|||||=+...... ..+.-.|++||+.+ + .-.+++.|..+.+ +|. +.++||+|++.++
T Consensus 52 ~lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------~------~~~I~qqDFm~rp-lp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------Q------HPGILQQDFMERP-LPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCccc--ccCceeeEEeecCC---------C------CCCceeeccccCC-CCCCcccceeEEEEEEE
Confidence 36899999975443222 23444699999985 0 1235667777765 542 3579999999999
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeE
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGL 1531 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGr 1531 (1662)
+.+++.....-.++..+.++|+|+|.
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 88888777777777888899999999
No 255
>KOG1227|consensus
Probab=95.87 E-value=0.0033 Score=72.49 Aligned_cols=95 Identities=19% Similarity=0.274 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCcHHHH-HHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSL-FCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL-~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+..|.|+.+|-|.+++ ++..+||+.|+|+|.++ .++..++.++.|+..++..++.+|-+... + ....|-|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~--~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--P--RLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--c--cccchheeec
Confidence 45789999999999999 88889999999999998 89999999999998888888888877653 2 4678888775
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGL 1531 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGr 1531 (1662)
++-.. ++-+... .++|+|.|-
T Consensus 270 LlPSs---e~~W~~A----~k~Lk~egg 290 (351)
T KOG1227|consen 270 LLPSS---EQGWPTA----IKALKPEGG 290 (351)
T ss_pred ccccc---ccchHHH----HHHhhhcCC
Confidence 54332 2222222 277887665
No 256
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.71 E-value=0.032 Score=65.72 Aligned_cols=101 Identities=21% Similarity=0.186 Sum_probs=73.7
Q ss_pred CCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCC-cEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSD-VITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeD-RVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
..+|||.=||+|.=++..+.. +..+|++-|+++ +++.++++++.|++.. ++++.+.|+..+- ......||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll--~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL--YSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH--CHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh--hhccccCCEEEe
Confidence 458999999999988888876 678999999997 9999999999999987 7999999998863 122478999999
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++++.-. .+++.. .+.++.||.|.+..
T Consensus 128 DPfGSp~---pfldsA----~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DPFGSPA---PFLDSA----LQAVKDGGLLCVTA 154 (377)
T ss_dssp --SS--H---HHHHHH----HHHEEEEEEEEEEE
T ss_pred CCCCCcc---HhHHHH----HHHhhcCCEEEEec
Confidence 8877654 344444 47789999987543
No 257
>KOG2798|consensus
Probab=95.62 E-value=0.086 Score=61.70 Aligned_cols=129 Identities=14% Similarity=0.194 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCC-
Q psy1769 1398 KQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSD- 1475 (1662)
Q Consensus 1398 ~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeD- 1475 (1662)
..|...|.-.|.+...++ ..........+||--|||.|.|+..+|..|. .+-|-|.|- |+-...-.+..-..++
T Consensus 125 ~ERd~~ykpii~~l~~lf---p~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq 200 (369)
T KOG2798|consen 125 RERDQLYKPIIEELNSLF---PSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQ 200 (369)
T ss_pred hhhhhhhhhHHHHHHhhC---CCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCc
Confidence 446667776666555555 2222233456899999999999999999987 577778885 5433222221101111
Q ss_pred --------------------------------------cEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHH
Q psy1769 1476 --------------------------------------VITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINA 1517 (1662)
Q Consensus 1476 --------------------------------------RVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEa 1517 (1662)
...+..||..++-..+...+.||+|+..++... .+.++ .
T Consensus 201 ~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~Nil-e 277 (369)
T KOG2798|consen 201 FTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNIL-E 277 (369)
T ss_pred EEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHH-H
Confidence 111122444333211111246999988643221 12334 4
Q ss_pred HHHHHHhcccCCeEEE
Q psy1769 1518 VVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1518 LLrALrRLLKPGGrLI 1533 (1662)
.++.+..+|+|||+.|
T Consensus 278 Yi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 278 YIDTIYKILKPGGVWI 293 (369)
T ss_pred HHHHHHHhccCCcEEE
Confidence 4577889999999987
No 258
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.11 Score=58.13 Aligned_cols=105 Identities=19% Similarity=0.240 Sum_probs=71.8
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
+..++.+||=||+.+|...-.++.. |...|+|||.|+ +.......+.. ..++--+.+|+........--+.+|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhhcccccEE
Confidence 3458899999999999988888885 556799999995 33222222222 135777888887643221112579999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.+..- ....+.+..+...+|++||.++..
T Consensus 150 y~DVAQ-----p~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 150 YQDVAQ-----PNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred EEecCC-----chHHHHHHHHHHHhcccCCeEEEE
Confidence 997542 234556677788899999987743
No 259
>KOG4589|consensus
Probab=95.39 E-value=0.12 Score=57.26 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=61.4
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEc-cccccc-------cCCCCC
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSVITQLTQEVVEENDCSDVITVICR-RMEDID-------RLPHGI 1494 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqG-DAEDLe-------sLPFED 1494 (1662)
.++.+|||+||..|.|+..+.+. ....|.|||+-.. ... ..+.++++ |+++.. .+| .
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp--~ 134 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------EPP-EGATIIQGNDVTDPETYRKIFEALP--N 134 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------cCC-CCcccccccccCCHHHHHHHHHhCC--C
Confidence 47899999999999999999887 3467999998641 111 12555655 665532 244 5
Q ss_pred CceeEEEEcCchh-----hhChHHHHH---HHHHHHHhcccCCeEEE
Q psy1769 1495 ENVDIIVSNWMGH-----VLYLDSLIN---AVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1495 ESFDVVISE~VgH-----~Ld~EdmLE---aLLrALrRLLKPGGrLI 1533 (1662)
..+|+|++++... +.+....++ .++.-...+|+|+|.++
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 6899999965332 122222222 22222236788999988
No 260
>KOG3987|consensus
Probab=95.30 E-value=0.0052 Score=68.28 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=62.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE-c
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS-N 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS-E 1503 (1662)
.+.++||||+|.|-++..++.. +.+|+|+|+|. |....++. ++ +| + ...++. ..+-++|+|.| +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~y--nV--l--~~~ew~---~t~~k~dli~clN 177 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----NY--NV--L--TEIEWL---QTDVKLDLILCLN 177 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----CC--ce--e--eehhhh---hcCceeehHHHHH
Confidence 5689999999999999999886 66899999996 87665543 22 11 1 111111 11247999999 5
Q ss_pred CchhhhChHHHHHHHHHHHHhcccC-CeEEEeec
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKP-HGLILPDR 1536 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKP-GGrLIPSs 1536 (1662)
.+.-+..+-. ++..+..+|+| .|++|..-
T Consensus 178 lLDRc~~p~k----LL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 178 LLDRCFDPFK----LLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHhhcChHH----HHHHHHHHhccCCCcEEEEE
Confidence 5555554333 44555678888 89888553
No 261
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.26 E-value=0.046 Score=62.31 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=63.7
Q ss_pred CEEEEECCCCc--HHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc----------CCC
Q psy1769 1428 KIVLEVGCGMG--LLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR----------LPH 1492 (1662)
Q Consensus 1428 KRVLDIGCGTG--lLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes----------LPF 1492 (1662)
...||||||-= .....+|+. ...+|+.||.++ .+..++..+..+.- .+..++.+|+.+... |.+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 46899999942 245555554 445999999999 78888988776542 358999999987541 111
Q ss_pred CCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1493 EDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
+..+=++++ .++|++..++....++..+...|.||.+|+++-.+
T Consensus 149 -~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 149 -DRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp -TS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred -CCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 234444444 45566655555677888999999999999976543
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.22 E-value=0.047 Score=61.27 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=47.9
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechH----HHHHHHHHHHhcCCC-----CcEEEEEccccccccCCCCCCcee
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV----ITQLTQEVVEENDCS-----DVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISp----MLEiARENAreNGLe-----DRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
.+|||.=||-|.-++.+|..|+ +|+++|.|+ +++.+.+++...... .+|+++.+|..++. .....+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L--~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL--RQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC--CCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH--hhcCCCCC
Confidence 3899999999999999998887 799999997 334444444433221 48999999999873 33368999
Q ss_pred EEEEcCchhh
Q psy1769 1499 IIVSNWMGHV 1508 (1662)
Q Consensus 1499 VVISE~VgH~ 1508 (1662)
||..++|+..
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999988654
No 263
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.21 E-value=0.086 Score=55.37 Aligned_cols=81 Identities=28% Similarity=0.351 Sum_probs=56.1
Q ss_pred EEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-CCCCCCceeEEEEcCchhhh--------ChHHHHHHHHH
Q psy1769 1451 HVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-LPHGIENVDIIVSNWMGHVL--------YLDSLINAVVY 1520 (1662)
Q Consensus 1451 KVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-LPFEDESFDVVISE~VgH~L--------d~EdmLEaLLr 1520 (1662)
+|+|+|+-+ +++.+++++++.++.++|+++...-+.+.. ++ .+++|+|+.++ ++.. ..+.-+.++ +
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~--~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al-~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP--EGPVDAAIFNL-GYLPGGDKSITTKPETTLKAL-E 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHH-H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc--cCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHH-H
Confidence 699999996 999999999999998899999998887763 23 24899999864 2222 233345554 5
Q ss_pred HHHhcccCCeEEEee
Q psy1769 1521 ARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1521 ALrRLLKPGGrLIPS 1535 (1662)
++.++|+|||++++.
T Consensus 77 ~al~lL~~gG~i~iv 91 (140)
T PF06962_consen 77 AALELLKPGGIITIV 91 (140)
T ss_dssp HHHHHEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEE
Confidence 556999999998843
No 264
>PHA01634 hypothetical protein
Probab=95.16 E-value=0.06 Score=56.68 Aligned_cols=71 Identities=21% Similarity=0.255 Sum_probs=54.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+++|||||++.|.-++.++-.||+.|+++|.++ +.+..+++++.+.+-++..-. . + .+..-+.||+.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---e---W~~~Y~~~Di~~iD 99 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---E---WNGEYEDVDIFVMD 99 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---c---ccccCCCcceEEEE
Confidence 7899999999999999999999999999999998 888888888776543322211 1 2 22234678988773
No 265
>KOG4058|consensus
Probab=94.99 E-value=0.051 Score=58.33 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
+..+.+|||.|.|.+.+.+++.|....+|+|+++ ++.+++-.+-..++.....|...|+-.++ +. .|..|+.-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~----dy~~vviF- 145 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LR----DYRNVVIF- 145 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-cc----ccceEEEe-
Confidence 4568999999999999999999977899999999 77888877777788888999999988765 43 33333331
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..+.++..+...+..-|..+..++-.
T Consensus 146 -----gaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 146 -----GAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -----ehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 12344555555555567778887743
No 266
>KOG2793|consensus
Probab=94.95 E-value=0.096 Score=59.26 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=60.4
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHH-----HHhcCCCCcEEEEEccccccccCCCCCCc-eeEE
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEV-----VEENDCSDVITVICRRMEDIDRLPHGIEN-VDII 1500 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiAREN-----AreNGLeDRVEFIqGDAEDLesLPFEDES-FDVV 1500 (1662)
...|||+|+|+|..++.+|......|...|....++....+ ++.+.+...+.+...+........+.... +|+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 56799999999999999998755589999988533333333 22333333455555544433211111233 8999
Q ss_pred EEcC-chhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1501 VSNW-MGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1501 ISE~-VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
++.- +..--..+. ++..++.+|..+|.++
T Consensus 167 lasDvvy~~~~~e~----Lv~tla~ll~~~~~i~ 196 (248)
T KOG2793|consen 167 LASDVVYEEESFEG----LVKTLAFLLAKDGTIF 196 (248)
T ss_pred EEeeeeecCCcchh----HHHHHHHHHhcCCeEE
Confidence 9943 333222333 3334457788888444
No 267
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.68 E-value=0.14 Score=57.46 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=51.8
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCC-CCceeEEEEcCch
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHG-IENVDIIVSNWMG 1506 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFE-DESFDVVISE~Vg 1506 (1662)
+|||+.||.|.+++-+.++|+..|+++|+++ +++..+.+.. . .++++|+.++. +.. ...+|+|++.+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~--~~~~~~~~D~l~~gpPC 72 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKID--EKDFIPDIDLLTGGFPC 72 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCc--hhhcCCCCCEEEeCCCC
Confidence 6899999999999999999998899999997 6666555532 1 15678888765 111 2579999986643
No 268
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.075 Score=62.89 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCC-CCceeE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHG-IENVDI 1499 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFE-DESFDV 1499 (1662)
.+..+.+|||+|.|.|.-...+-.. -.+.++.+|.|+++...-..+.++-..........|+.... ++++ ...|++
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dR-l~lp~ad~ytl 188 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDR-LSLPAADLYTL 188 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhc-cCCCccceeeh
Confidence 3447788999999998755444433 24568888999866555555555443333333333443322 2221 245666
Q ss_pred EEE-cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVS-NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VIS-E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||. +-+.+.- .+.-+...++.+..+|.|||.|++.+
T Consensus 189 ~i~~~eLl~d~-~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 189 AIVLDELLPDG-NEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhhcccc-CcchHHHHHHHHHHhccCCCeEEEEe
Confidence 655 2222222 22323445566668899999877543
No 269
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.35 E-value=0.12 Score=56.37 Aligned_cols=93 Identities=26% Similarity=0.344 Sum_probs=60.9
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc--cCCCCCCceeEEEEcCc
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID--RLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe--sLPFEDESFDVVISE~V 1505 (1662)
+|+|+-||.|.+.+-+.++|...|.++|+++ +++.-+.+.. .+..+|+.++. .++ ..+|+|+..+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~---~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP---KDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH---HT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc---ccceEEEeccC
Confidence 6999999999999999999988899999997 5555555532 67889998875 233 15999998554
Q ss_pred hhhh----------ChH-HHHHHHHHHHHhcccCCeEEE
Q psy1769 1506 GHVL----------YLD-SLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1506 gH~L----------d~E-dmLEaLLrALrRLLKPGGrLI 1533 (1662)
...+ +.. .++..+++.+ +.++|.-+|+
T Consensus 71 CQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~~ 108 (335)
T PF00145_consen 71 CQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFLL 108 (335)
T ss_dssp -TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEEE
T ss_pred CceEeccccccccccccchhhHHHHHHH-hhccceEEEe
Confidence 3322 111 1344454444 5677876654
No 270
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.34 E-value=0.057 Score=65.83 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=62.2
Q ss_pred CEEEEECCCCcHHHHHHHHhCCCEEEEEechHH-HHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCch
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG 1506 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARAGAKKVTGVDISpM-LEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~Vg 1506 (1662)
..|+|+.+|.|.++..|.... |+.+-+.+. -.-....+-+.|+- -+. .|..+- +++=...||+|.+..++
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydRGLI---G~y-hDWCE~--fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDRGLI---GVY-HDWCEA--FSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhcccc---hhc-cchhhc--cCCCCcchhheehhhhh
Confidence 579999999999999998864 443333320 00011112233432 122 233221 22223899999998776
Q ss_pred hhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1507 HVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1507 H~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
......-.+..++-++.|+|+|||.+|+..
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 665555557778889999999999999654
No 271
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.15 E-value=1 Score=51.37 Aligned_cols=100 Identities=22% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCC-CCceeEEE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHG-IENVDIIV 1501 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFE-DESFDVVI 1501 (1662)
+.+++||-||-.- +.++.+|.. ..++|+.+|+++ +++..++.+++.|+. |+.+..|+.+- ||.+ .++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~--LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDP--LPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS-----TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccccc--CCHHHhcCCCEEE
Confidence 4789999999776 455555543 367999999997 999999999999986 99999999874 4532 47999999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCe-EEE
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHG-LIL 1533 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGG-rLI 1533 (1662)
++++... .-+..++......||..| ..+
T Consensus 118 TDPPyT~----~G~~LFlsRgi~~Lk~~g~~gy 146 (243)
T PF01861_consen 118 TDPPYTP----EGLKLFLSRGIEALKGEGCAGY 146 (243)
T ss_dssp E---SSH----HHHHHHHHHHHHTB-STT-EEE
T ss_pred eCCCCCH----HHHHHHHHHHHHHhCCCCceEE
Confidence 9887554 234555565557787655 444
No 272
>KOG1562|consensus
Probab=93.85 E-value=0.17 Score=59.02 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=78.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhc--CCC-CcEEEEEccccccccCCCCCCceeE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEN--DCS-DVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreN--GLe-DRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
...++||-||-|.|.+....+++ ....+.-+|+.. +++..++.+... ++. .+|.++-||...+-+ -...++|||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~-~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLE-DLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHH-HhccCCceE
Confidence 36789999999999998888887 356788999997 777777776542 333 578888898766531 112578999
Q ss_pred EEEcCchhhhChHH-HHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVSNWMGHVLYLDS-LINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VISE~VgH~Ld~Ed-mLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||.+.-.-..+.+. +.+.++.-+.+.||+||+++...
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 99965333333222 34455666778999999998544
No 273
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=93.32 E-value=0.27 Score=57.14 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-CC-CCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-LP-HGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-LP-FEDESFDVVI 1501 (1662)
++..++|.=||.|..+..+++. +..+|+|+|.++ +++.|++.+.. +.+++.+++++..++.. +. ....++|.|+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 6789999999999999999986 346899999997 89999988764 34689999999887641 11 0135799999
Q ss_pred EcC
Q psy1769 1502 SNW 1504 (1662)
Q Consensus 1502 SE~ 1504 (1662)
.++
T Consensus 98 ~DL 100 (305)
T TIGR00006 98 VDL 100 (305)
T ss_pred Eec
Confidence 865
No 274
>KOG3115|consensus
Probab=92.97 E-value=0.2 Score=56.22 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=43.3
Q ss_pred EEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcC------CCCcEEEEEcccccc
Q psy1769 1429 IVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEEND------CSDVITVICRRMEDI 1487 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNG------LeDRVEFIqGDAEDL 1487 (1662)
.+.|||||-|.+.+.++.. .-.-++|+||-. +.+..++++++.. .-.++.++...+..+
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 5799999999999999987 345688999984 7777777776544 123466666665554
No 275
>KOG2198|consensus
Probab=92.45 E-value=0.78 Score=54.81 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHhCC-----CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC------
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGA-----KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL------ 1490 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARAGA-----KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL------ 1490 (1662)
...++.+|||+.+-.|.=+..+.++.. ..|+|=|++. -+...+..+.... ...+.+...|+..++..
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCc
Confidence 345899999999999998877777632 2699999985 2333333332222 12344555555443311
Q ss_pred CCCCCceeEEEEcCchhh--------------------hChHHHHHHHHHHHHhcccCCeEEEeecCceeEeecccc
Q psy1769 1491 PHGIENVDIIVSNWMGHV--------------------LYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT 1547 (1662)
Q Consensus 1491 PFEDESFDVVISE~VgH~--------------------Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIEDe 1547 (1662)
+.+...||-|+++..... +.-..+.-.++....++||+||+|+-+.|+ +-|++.+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNE 305 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENE 305 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhH
Confidence 112357999998653321 001112224455566999999999988876 3466655
No 276
>KOG2920|consensus
Probab=92.18 E-value=0.11 Score=59.85 Aligned_cols=106 Identities=24% Similarity=0.296 Sum_probs=59.4
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHH-------HHHHHH--hcCCCCcEEEEEccccccccCCC-CC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQL-------TQEVVE--ENDCSDVITVICRRMEDIDRLPH-GI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEi-------ARENAr--eNGLeDRVEFIqGDAEDLesLPF-ED 1494 (1662)
.+++|||+|||+|+..+.+...|+..|...|.+. .++. +.-.+. .+....-..++...+.++. +-. +.
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~-~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGV-FNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccch-hhhccc
Confidence 7899999999999999999999877899999884 4311 010000 1111111223333111211 100 11
Q ss_pred CceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1495 ENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1495 ESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
-.||+|.+.-..+.......+. ...+..+++++|+++.
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~--~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLY--LLHRPCLLKTDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhH--hhhhhhcCCccchhhh
Confidence 2789888844444333222221 3445578899998773
No 277
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.97 E-value=0.84 Score=51.70 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHh---CCCEEEEEechH-HHHHHHHHHHhc------------------------------
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA---GAKHVISVDCSV-ITQLTQEVVEEN------------------------------ 1471 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA---GAKKVTGVDISp-MLEiARENAreN------------------------------ 1471 (1662)
.+-.++|-.||.|.+.-.+.-. ....|+|-|+++ +++.|++++...
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 5678999999999876655543 246899999996 999998874321
Q ss_pred -----------CCCCcEEEEEcccccccc---CCCCCCceeEEEEcC-chhhhChHH-----HHHHHHHHHHhcccCCeE
Q psy1769 1472 -----------DCSDVITVICRRMEDIDR---LPHGIENVDIIVSNW-MGHVLYLDS-----LINAVVYARDRFLKPHGL 1531 (1662)
Q Consensus 1472 -----------GLeDRVEFIqGDAEDLes---LPFEDESFDVVISE~-VgH~Ld~Ed-----mLEaLLrALrRLLKPGGr 1531 (1662)
|-..-..+.+.|+.+... ++ .....|+||.++ -+....|++ -...++..+..+|-.+++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 111236677777776320 11 013469999965 334444443 567778888999954444
Q ss_pred EE
Q psy1769 1532 IL 1533 (1662)
Q Consensus 1532 LI 1533 (1662)
|.
T Consensus 210 V~ 211 (246)
T PF11599_consen 210 VA 211 (246)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 278
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.94 E-value=0.59 Score=55.19 Aligned_cols=92 Identities=23% Similarity=0.296 Sum_probs=58.7
Q ss_pred CCCCCEEEEECCC-CcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEc-cccccccCCCCCCceeE
Q psy1769 1424 LLKDKIVLEVGCG-MGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICR-RMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1424 dlpGKRVLDIGCG-TGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqG-DAEDLesLPFEDESFDV 1499 (1662)
..++.+|+-+|+| .|.++..+|++ |+ +|+++|.++ -++.|++. |. -.++.. |......+. +.||+
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~~---~~~d~ 232 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAVK---EIADA 232 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHhH---hhCcE
Confidence 4478999999998 24578888884 74 999999996 67777765 22 223332 222222122 34999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||.-.. .. .+... .++|++||+++..-
T Consensus 233 ii~tv~-~~-----~~~~~----l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTVG-PA-----TLEPS----LKALRRGGTLVLVG 259 (339)
T ss_pred EEECCC-hh-----hHHHH----HHHHhcCCEEEEEC
Confidence 998543 21 12222 37899999998544
No 279
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.60 E-value=1.1 Score=55.37 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=34.2
Q ss_pred CCCCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHH
Q psy1769 1423 HLLKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARE 1466 (1662)
...++.+||-+|||. |..++.+|+. |+ .|+++|.++ -++.+++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes 206 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 345789999999997 8888888876 77 799999996 5555554
No 280
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.25 E-value=0.4 Score=55.40 Aligned_cols=96 Identities=27% Similarity=0.308 Sum_probs=58.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcc-c-cccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRR-M-EDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGD-A-EDLesLPFEDESFDVV 1500 (1662)
.+.+|+-+|||. |+++..+++. |+.+|+++|.++ -++.|++.... +.+.....+ . .....+. ....+|+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t-~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT-GGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh-CCCCCCEE
Confidence 344999999998 9998888876 889999999996 77888764321 111111111 1 0010011 01369998
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|-..- ....+ ....++++++|.+++.
T Consensus 243 ie~~G-----~~~~~----~~ai~~~r~gG~v~~v 268 (350)
T COG1063 243 IEAVG-----SPPAL----DQALEALRPGGTVVVV 268 (350)
T ss_pred EECCC-----CHHHH----HHHHHHhcCCCEEEEE
Confidence 87332 11122 3334889999998744
No 281
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.15 E-value=0.57 Score=52.45 Aligned_cols=111 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCCCCCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechHHH-----H--HHHHHHHhcCCCCcEEEEEccccccccCCC
Q psy1769 1422 SHLLKDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSVIT-----Q--LTQEVVEENDCSDVITVICRRMEDIDRLPH 1492 (1662)
Q Consensus 1422 A~dlpGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISpML-----E--iARENAreNGLeDRVEFIqGDAEDLesLPF 1492 (1662)
.+..++.+|+|+-.|.|.++..++.. | ...|++.-..+.. + ..+...++..+ .+++.+-.+...+. .|
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~-~p- 120 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALG-AP- 120 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccC-CC-
Confidence 34558999999999999999999987 3 2367776444321 1 11111222222 24555555555543 33
Q ss_pred CCCceeEEEEcCchhhhC----hHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1493 GIENVDIIVSNWMGHVLY----LDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1493 EDESFDVVISE~VgH~Ld----~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
+..|+++.....|.+. .......+..++.+.|||||+++..+.
T Consensus 121 --q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 --QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred --CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 6778877744333321 234466677788899999999886553
No 282
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.07 E-value=1 Score=50.75 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=54.8
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-+|||. |.++..+|++ |+++|+++|.++ -++.|++ .|...-+.....++.++. ...+.+|+|+-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~---~~~g~~D~vid 241 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYK---AEKGYFDVSFE 241 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHh---ccCCCCCEEEE
Confidence 578999999875 6677777775 777899999986 5555553 343211111111222221 11235899887
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.. +. ...+.. ..++|+++|+++...
T Consensus 242 ~~-G~----~~~~~~----~~~~l~~~G~iv~~G 266 (343)
T PRK09880 242 VS-GH----PSSINT----CLEVTRAKGVMVQVG 266 (343)
T ss_pred CC-CC----HHHHHH----HHHHhhcCCEEEEEc
Confidence 32 21 112222 237899999988543
No 283
>KOG2671|consensus
Probab=91.04 E-value=0.28 Score=58.17 Aligned_cols=79 Identities=22% Similarity=0.183 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHH-------HHHHHHHhcCCC-CcEEEEEccccccccCCCCCC
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQ-------LTQEVVEENDCS-DVITVICRRMEDIDRLPHGIE 1495 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLE-------iARENAreNGLe-DRVEFIqGDAEDLesLPFEDE 1495 (1662)
.+++.|+|--.|||.+...+|..|+ .|+|.||+- ++. ..+.+++..|.. .-+.++.+|...-. +- ...
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~-~r-sn~ 283 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPP-LR-SNL 283 (421)
T ss_pred CCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcc-hh-hcc
Confidence 4899999999999999999999988 899999994 544 235666666643 23567788877654 32 146
Q ss_pred ceeEEEEcCch
Q psy1769 1496 NVDIIVSNWMG 1506 (1662)
Q Consensus 1496 SFDVVISE~Vg 1506 (1662)
.||+|||++..
T Consensus 284 ~fDaIvcDPPY 294 (421)
T KOG2671|consen 284 KFDAIVCDPPY 294 (421)
T ss_pred eeeEEEeCCCc
Confidence 89999998653
No 284
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.89 E-value=0.78 Score=52.41 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=54.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
...+|||||||.=-+++.+.... ...|+|+|++. +++.....+...++. ..+...|+.... + ....|+.+.-
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~--~--~~~~DlaLll 178 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP--P--KEPADLALLL 178 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH--T--TSEESEEEEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC--C--CCCcchhhHH
Confidence 47899999999988888776652 34899999996 889998888887765 556666765542 2 3789999985
Q ss_pred Cchhhh
Q psy1769 1504 WMGHVL 1509 (1662)
Q Consensus 1504 ~VgH~L 1509 (1662)
=+.+++
T Consensus 179 K~lp~l 184 (251)
T PF07091_consen 179 KTLPCL 184 (251)
T ss_dssp T-HHHH
T ss_pred HHHHHH
Confidence 555555
No 285
>KOG1253|consensus
Probab=90.74 E-value=0.18 Score=61.73 Aligned_cols=108 Identities=21% Similarity=0.220 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVVI 1501 (1662)
++.+|||.=|++|+-++..|+. |+..|++-|.++ .++..+++++.|+.++.|+....|+..+- ..+.....||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 5678999999999999998886 678899999997 88989999999998888888888886643 0122246899999
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCcee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLY 1540 (1662)
.++.+... .+|+.. .+.++.||+|++..-++.
T Consensus 189 LDPyGs~s---~FLDsA----vqav~~gGLL~vT~TD~a 220 (525)
T KOG1253|consen 189 LDPYGSPS---PFLDSA----VQAVRDGGLLCVTCTDMA 220 (525)
T ss_pred cCCCCCcc---HHHHHH----HHHhhcCCEEEEEecchH
Confidence 98876644 344444 477899999986654433
No 286
>KOG0024|consensus
Probab=90.11 E-value=0.49 Score=55.91 Aligned_cols=97 Identities=23% Similarity=0.280 Sum_probs=61.3
Q ss_pred CCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcc--cccccc---CCCCCCc
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRR--MEDIDR---LPHGIEN 1496 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGD--AEDLes---LPFEDES 1496 (1662)
..+.+||-+|||. |++++.+|++ |+.+|+.+|+++ -++.|++ + |.. .+...... +.++.+ -......
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~-~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT-VTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe-EEeeccccccHHHHHHHHHhhccccC
Confidence 4788999999997 9999999997 999999999996 7888887 3 332 12222111 111110 0111345
Q ss_pred eeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1497 VDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1497 FDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+|++|....... .++.. ...|+.||.++..
T Consensus 243 ~d~~~dCsG~~~-----~~~aa----i~a~r~gGt~vlv 272 (354)
T KOG0024|consen 243 PDVTFDCSGAEV-----TIRAA----IKATRSGGTVVLV 272 (354)
T ss_pred CCeEEEccCchH-----HHHHH----HHHhccCCEEEEe
Confidence 888887432221 12222 3678999997644
No 287
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=90.08 E-value=3.3 Score=46.79 Aligned_cols=128 Identities=12% Similarity=0.068 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCC--CCc
Q psy1769 1399 QLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDC--SDV 1476 (1662)
Q Consensus 1399 vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGL--eDR 1476 (1662)
.|+..+.+.+...... ....|+.||||-=.-...+.......++=||..++++.-++.+...+. ..+
T Consensus 65 ~Rtr~~D~~i~~~~~~-----------g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~ 133 (260)
T TIGR00027 65 VRTRFFDDFLLAAVAA-----------GIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAH 133 (260)
T ss_pred HHHHHHHHHHHHHHhc-----------CCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCc
Confidence 4666666666532110 234699999998666655533211245555555577777777776442 367
Q ss_pred EEEEEcccccc-c-cC---CCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1477 ITVICRRMEDI-D-RL---PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1477 VEFIqGDAEDL-e-sL---PFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
.+++..|+.+. . .| .+.....-++|++.+..++..+ ....++..+.++..||+.|+++...
T Consensus 134 ~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 134 RRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred eEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEecc
Confidence 88999998621 0 01 2223456688889998888654 5566778887888899999877543
No 288
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.74 E-value=0.99 Score=56.19 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-------C------CCEEEEEechHH----H-----------HHHHHHHHh-----cC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-------G------AKHVISVDCSVI----T-----------QLTQEVVEE-----ND 1472 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-------G------AKKVTGVDISpM----L-----------EiARENAre-----NG 1472 (1662)
..-+|||+|-|+|...+.+.+. . .-+++++|..++ + +.+.+.+.. .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999855544421 1 127889997431 1 111222111 12
Q ss_pred C------CC--cEEEEEccccccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1473 C------SD--VITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1473 L------eD--RVEFIqGDAEDLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
+ .+ .++++.+|+.+.. +.-...||+|+.+.+.-...++-+-..++..+.++++|||.++
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~--~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELL--PQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHH--HhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 2 11 3457778887652 2112569999998766655555566778889999999999987
No 289
>KOG1099|consensus
Probab=89.26 E-value=0.92 Score=51.87 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=63.0
Q ss_pred CCEEEEECCCCcHHHHHHHHh--------CC--CEEEEEechHHHHHHHHHHHhcCCCCcEEEEEcccccccc-----CC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA--------GA--KHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR-----LP 1491 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA--------GA--KKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLes-----LP 1491 (1662)
-.+|+|+.+..|.|+..+++. +. +++++||+-+|+ .++ .|.-+++|++...- --
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------PI~-GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------PIE-GVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------ccC-ceEEeecccCCHhHHHHHHHH
Confidence 358999999999999999885 12 249999998753 233 36678888876430 02
Q ss_pred CCCCceeEEEEcCch-----hhhC---hHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1492 HGIENVDIIVSNWMG-----HVLY---LDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1492 FEDESFDVVISE~Vg-----H~Ld---~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
|..++.|+|||+..- |-++ ..+++-..|.-...+|+|||.|+
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 445799999995421 2121 11223333444568999999987
No 290
>KOG1596|consensus
Probab=89.25 E-value=0.86 Score=52.37 Aligned_cols=100 Identities=18% Similarity=0.205 Sum_probs=63.3
Q ss_pred CCCCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH-----HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCc
Q psy1769 1424 LLKDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV-----ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIEN 1496 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp-----MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDES 1496 (1662)
..++.+||=||+++|.....+... | -.-|+|||.|. ++..|+++ .+|--+..|+.-....-..-.-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgm 226 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGM 226 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeee
Confidence 348999999999999977777775 2 34599999994 34444433 3466666677643200000136
Q ss_pred eeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1497 VDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1497 FDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+|+|+++.... +....+.-+...+|++||.++.+
T Consensus 227 VDvIFaDvaqp-----dq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVAQP-----DQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCCCc-----hhhhhhhhhhhhhhccCCeEEEE
Confidence 78888865422 22333333455899999998854
No 291
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.80 E-value=1.5 Score=50.52 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=48.4
Q ss_pred EEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1430 VLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
|||+-||.|.+++-+.++|..-|.++|+++ +++..+.+. .+ .++.+|+.++. .. .-..+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~-~~-~~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKIS-PS-DIPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhh-hh-hCCCcCEEEecCC
Confidence 689999999999999999987788999997 555555443 22 45668888765 11 1135899998543
No 292
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=88.43 E-value=2.9 Score=50.40 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcccCCeEEEee
Q psy1769 1515 INAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1515 LEaLLrALrRLLKPGGrLIPS 1535 (1662)
+..+|..+.+-|.|||++++.
T Consensus 216 ~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 216 LAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred HHHHHHHHHHHhccCcEEEEE
Confidence 556778888899999999844
No 293
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=88.32 E-value=2.9 Score=51.25 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C----CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC--CCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G----AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL--PHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G----AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL--PFEDESF 1497 (1662)
+..+|+|-.||+|.+...+++. + -..++|.|+.+ ....|+.++-.+++...+....+|...-+.. ....+.|
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~ 265 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKF 265 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccce
Confidence 4559999999999887777664 1 24699999996 8889998888888754345555554332201 1134679
Q ss_pred eEEEEcCchh
Q psy1769 1498 DIIVSNWMGH 1507 (1662)
Q Consensus 1498 DVVISE~VgH 1507 (1662)
|+|++++...
T Consensus 266 D~viaNPPf~ 275 (489)
T COG0286 266 DFVIANPPFS 275 (489)
T ss_pred eEEEeCCCCC
Confidence 9999977554
No 294
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.02 E-value=0.77 Score=47.46 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=33.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARE 1466 (1662)
++..|||.-||+|..+..+.+.|- +.+|+|+++ .++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 788999999999999999999855 899999997 7787764
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.13 E-value=2 Score=51.55 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=74.8
Q ss_pred CCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
..+|||.=+|+|+=++.+|.. +..+|+.-|+++ +++.++++++.|... ...++..|+..+- -.....||+|=.++
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm--~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALL--HELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHH--HhcCCCccEEecCC
Confidence 678999999999998888875 444899999998 999999999998443 3566668887653 21126899999988
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
++.-. .+++.. .+.++.+|+|.+.
T Consensus 130 FGSPa---PFlDaA----~~s~~~~G~l~vT 153 (380)
T COG1867 130 FGSPA---PFLDAA----LRSVRRGGLLCVT 153 (380)
T ss_pred CCCCc---hHHHHH----HHHhhcCCEEEEE
Confidence 77655 344444 4677889998754
No 296
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.76 E-value=0.91 Score=52.32 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=33.5
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEV 1467 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAREN 1467 (1662)
++.+||.+|||. |.++..+|++ |+.+|+++|.++ .++.+++.
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 678999999987 8888888876 666799999986 77776654
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=86.20 E-value=6.3 Score=45.06 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=66.5
Q ss_pred hhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHh----C--CCEEEEEechH------------
Q psy1769 1398 KQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA----G--AKHVISVDCSV------------ 1459 (1662)
Q Consensus 1398 ~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARA----G--AKKVTGVDISp------------ 1459 (1662)
..|...+..++...... .-+..|+|+||-.|..+++++.. + .++|++.|.=+
T Consensus 56 ~~Rl~~L~~~~~~v~~~----------~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~ 125 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAE----------DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPA 125 (248)
T ss_dssp HHHHHHHHHHHHHCCHT----------TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCC
T ss_pred HHHHHHHHHHHHHHHhc----------CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccc
Confidence 45566666666632211 13568999999999866555432 2 35788876321
Q ss_pred ---------------HHHHHHHHHHhcCC-CCcEEEEEccccccccCCC-CCCceeEEEEcCchhhhChHHHHHHHHHHH
Q psy1769 1460 ---------------ITQLTQEVVEENDC-SDVITVICRRMEDIDRLPH-GIENVDIIVSNWMGHVLYLDSLINAVVYAR 1522 (1662)
Q Consensus 1460 ---------------MLEiARENAreNGL-eDRVEFIqGDAEDLesLPF-EDESFDVVISE~VgH~Ld~EdmLEaLLrAL 1522 (1662)
.++..++++...++ .+++.++.|.+.+. +|. ..+++-++..+.= ..+. ....|..+
T Consensus 126 d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dT--Lp~~p~~~IAll~lD~D----lYes-T~~aLe~l 198 (248)
T PF05711_consen 126 DKGWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDT--LPDAPIERIALLHLDCD----LYES-TKDALEFL 198 (248)
T ss_dssp CCHCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHH--CCC-TT--EEEEEE-------SHHH-HHHHHHHH
T ss_pred cchhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhh--hccCCCccEEEEEEecc----chHH-HHHHHHHH
Confidence 12333333433343 46899999998775 341 1244544444321 1222 33445777
Q ss_pred HhcccCCeEEEeecCce
Q psy1769 1523 DRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1523 rRLLKPGGrLIPSsATL 1539 (1662)
...|.|||+||+.....
T Consensus 199 yprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 199 YPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp GGGEEEEEEEEESSTTT
T ss_pred HhhcCCCeEEEEeCCCC
Confidence 89999999999887554
No 298
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=86.12 E-value=1.1 Score=51.40 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCCEEEEECCCCcHHHHHH--HHhCCCEEEEEechH-HHHHHHHHHHhc-CCCCcEEEEEccccccc--cCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFC--AEAGAKHVISVDCSV-ITQLTQEVVEEN-DCSDVITVICRRMEDID--RLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~L--ARAGAKKVTGVDISp-MLEiARENAreN-GLeDRVEFIqGDAEDLe--sLPFEDESFDV 1499 (1662)
+..++||||.|.-.+--.+ -..|. +.+|.|+++ .++.|+.++..| ++...|++....-.+.. .+-...+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5678999999975432222 22355 789999997 889999999888 78777877655333221 11112478999
Q ss_pred EEEcCchhhh
Q psy1769 1500 IVSNWMGHVL 1509 (1662)
Q Consensus 1500 VISE~VgH~L 1509 (1662)
++|++.+|.-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999987754
No 299
>PRK11524 putative methyltransferase; Provisional
Probab=85.48 E-value=1 Score=50.92 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=41.6
Q ss_pred cEEEEEccccccc-cCCCCCCceeEEEEcCchhhh-------------ChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1476 VITVICRRMEDID-RLPHGIENVDIIVSNWMGHVL-------------YLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1476 RVEFIqGDAEDLe-sLPFEDESFDVVISE~VgH~L-------------d~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...++++|+.++. .++ +++||+||+++..... .....+..++.++.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~--~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP--SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc--cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578999998853 233 6799999998754320 12234567888999999999999864
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=85.38 E-value=1.4 Score=49.77 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE 1470 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre 1470 (1662)
++..|||--||+|..++.+.+.|- +.+|+|+++ .++.|++++..
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 789999999999999999999855 799999996 88999988753
No 301
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.94 E-value=5.5 Score=46.70 Aligned_cols=104 Identities=17% Similarity=0.159 Sum_probs=56.3
Q ss_pred CCCEEEEECCCCcHHHHHHHHh----------CC-------CEEEEEech--HH---HHHHHH---HHHhcCCCCcE--E
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA----------GA-------KHVISVDCS--VI---TQLTQE---VVEENDCSDVI--T 1478 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA----------GA-------KKVTGVDIS--pM---LEiARE---NAreNGLeDRV--E 1478 (1662)
...+|+|+||.+|..++.+... .. -.|+..|+- .+ ....-. .... ...+ .
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---~~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---FRNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH---TTSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC---CceEEEE
Confidence 4568999999999888777653 11 267788865 22 222111 1111 1122 2
Q ss_pred EEEccccccccCCCCCCceeEEEEcCchhhhC------------------------------------hHHHHHHHHHHH
Q psy1769 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLY------------------------------------LDSLINAVVYAR 1522 (1662)
Q Consensus 1479 FIqGDAEDLesLPFEDESFDVVISE~VgH~Ld------------------------------------~EdmLEaLLrAL 1522 (1662)
-+.+..-.-. +| .+++|++++....|++. .+..+..+|..+
T Consensus 93 gvpgSFy~rL-fP--~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~R 169 (334)
T PF03492_consen 93 GVPGSFYGRL-FP--SNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKAR 169 (334)
T ss_dssp EEES-TTS---S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhcc-CC--CCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334443322 34 78999999965555431 012466778888
Q ss_pred HhcccCCeEEEee
Q psy1769 1523 DRFLKPHGLILPD 1535 (1662)
Q Consensus 1523 rRLLKPGGrLIPS 1535 (1662)
.+-|+|||++|+.
T Consensus 170 a~ELv~GG~mvl~ 182 (334)
T PF03492_consen 170 AEELVPGGRMVLT 182 (334)
T ss_dssp HHHEEEEEEEEEE
T ss_pred hheeccCcEEEEE
Confidence 8999999999844
No 302
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=84.00 E-value=5.5 Score=42.58 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=62.1
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-------cC-C--------CCcEEEEEcccccccc
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-------ND-C--------SDVITVICRRMEDIDR 1489 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-------NG-L--------eDRVEFIqGDAEDLes 1489 (1662)
+|.-||+|+ | .++..++..|. .|+.+|.++ .++.+++.+.. .+ + ..++. ...|+.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 467799997 5 47788888887 899999996 66666655443 11 1 12344 33445443
Q ss_pred CCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeec
Q psy1769 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAA 1544 (1662)
Q Consensus 1490 LPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPI 1544 (1662)
...|+||-..... -+....++..+.+++.|+.+|.-...++-+..+
T Consensus 77 -----~~adlViEai~E~----l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 77 -----VDADLVIEAIPED----LELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp -----CTESEEEE-S-SS----HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred -----hhhheehhhcccc----HHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 2689998865433 345677888888999999998755544444333
No 303
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=83.92 E-value=3.2 Score=48.07 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=52.2
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
..+|+|+-||.|.+.+-+..+|+.-+.++|+++ .++.-+.+... ..++..|+.++..-.+....+|+|+..+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 458999999999999999999988899999997 44444444321 45677777765411110117899998654
Q ss_pred hh
Q psy1769 1506 GH 1507 (1662)
Q Consensus 1506 gH 1507 (1662)
..
T Consensus 77 CQ 78 (328)
T COG0270 77 CQ 78 (328)
T ss_pred Cc
Confidence 43
No 304
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=82.47 E-value=4 Score=45.24 Aligned_cols=75 Identities=21% Similarity=0.250 Sum_probs=46.4
Q ss_pred CCEEEEECCCCcHHHHHHHHh---------CCCEEEEEechH-HHHHHHHHHHhc-----CCCCcEEEEEccccccccCC
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEA---------GAKHVISVDCSV-ITQLTQEVVEEN-----DCSDVITVICRRMEDIDRLP 1491 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARA---------GAKKVTGVDISp-MLEiARENAreN-----GLeDRVEFIqGDAEDLesLP 1491 (1662)
..+|+|+|+|+|.++.-+++. ...+++.||+|+ +.+..++.+... .+..+|.+ ..++.+ .|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~---~p 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEE---VP 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGC---S-
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhc---cc
Confidence 468999999999999888875 124899999997 777777666542 13345666 223332 22
Q ss_pred CCCCceeEEEEcCchhhh
Q psy1769 1492 HGIENVDIIVSNWMGHVL 1509 (1662)
Q Consensus 1492 FEDESFDVVISE~VgH~L 1509 (1662)
..-+||++-++..+
T Consensus 95 ----~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 ----FPGFIIANELFDAL 108 (252)
T ss_dssp ----CCEEEEEESSGGGS
T ss_pred ----CCEEEEEeeehhcC
Confidence 34677775444444
No 305
>PRK10458 DNA cytosine methylase; Provisional
Probab=81.93 E-value=9.1 Score=47.20 Aligned_cols=60 Identities=10% Similarity=0.052 Sum_probs=41.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID 1488 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe 1488 (1662)
...+++|+-||.|.+.+-+-.+|...|.++|+++ +++.-+.+... .....++.+|+.++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFNEDIRDIT 147 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceeccChhhCc
Confidence 3569999999999999999998988889999997 44433333210 112345566766653
No 306
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.77 E-value=5.4 Score=44.97 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=51.2
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-+|||. |.++..+|+. |++.|++++.++ -++.+++ .+...-+.....+..++..+. ....+|.++.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~-~~~~~d~~v~ 234 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGAMQTFNSREMSAPQIQSVL-RELRFDQLIL 234 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCceEecCcccCHHHHHHHh-cCCCCCeEEE
Confidence 678999999875 6666666665 776689998875 4444432 233211111111111111011 1235784444
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+.++. ...+... .++|++||+++..
T Consensus 235 d~~G~----~~~~~~~----~~~l~~~G~iv~~ 259 (347)
T PRK10309 235 ETAGV----PQTVELA----IEIAGPRAQLALV 259 (347)
T ss_pred ECCCC----HHHHHHH----HHHhhcCCEEEEE
Confidence 44432 1122222 3788999998854
No 307
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.65 E-value=5.5 Score=46.93 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=70.7
Q ss_pred CCCCCCEEEEECCCCcHHHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCC-CCceeE
Q psy1769 1423 HLLKDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHG-IENVDI 1499 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGTGlLSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFE-DESFDV 1499 (1662)
+++.++.||-+| -.-+.++.++-.| +++|..||+++ ++....+.+++.|+. +++.+..|+... +|.. ..+||+
T Consensus 149 GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~p--lpe~~~~kFDv 224 (354)
T COG1568 149 GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNP--LPEDLKRKFDV 224 (354)
T ss_pred cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhccc--ChHHHHhhCCe
Confidence 456788999999 4446666666655 67899999997 888888888888874 588888888774 4421 268999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCC
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPH 1529 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPG 1529 (1662)
++.+++..+. .+..++..-...|+-.
T Consensus 225 fiTDPpeTi~----alk~FlgRGI~tLkg~ 250 (354)
T COG1568 225 FITDPPETIK----ALKLFLGRGIATLKGE 250 (354)
T ss_pred eecCchhhHH----HHHHHHhccHHHhcCC
Confidence 9998765543 3444544433556654
No 308
>PRK13699 putative methylase; Provisional
Probab=81.32 E-value=2.9 Score=46.47 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=38.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE 1470 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAre 1470 (1662)
++..|||--||+|..+..+.+.|- +++|+|+++ ..+.|.+++..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 788999999999999999999865 799999997 78888887765
No 309
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.29 E-value=4.9 Score=46.12 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=52.3
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc-ccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME-DIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE-DLesLPFEDESFDVVI 1501 (1662)
++.+||-+|+|. |.++..+|+. |+.+|+++|.++ -++.|++ .|...-+.....+.. .+..+. .+.+|+||
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~--~~g~d~vi 264 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT--GGGVDYAF 264 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh--CCCCCEEE
Confidence 678888899875 6666666665 776799999886 5555543 343211111111111 111011 13689998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-.. +. ...+... .++|+++|+++..
T Consensus 265 d~~-G~----~~~~~~~----~~~l~~~G~iv~~ 289 (371)
T cd08281 265 EMA-GS----VPALETA----YEITRRGGTTVTA 289 (371)
T ss_pred ECC-CC----hHHHHHH----HHHHhcCCEEEEE
Confidence 632 11 1122222 3789999998753
No 310
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=79.88 E-value=5.3 Score=44.86 Aligned_cols=84 Identities=24% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-+|||. |.++..+|++ |+..|+++|..+ .++.|.+. . ++ +..+.. ...+|+||-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~~-----~~g~Dvvid 206 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKDP-----RRDYRAIYD 206 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhcc-----CCCCCEEEE
Confidence 456789889885 7777777775 887788888875 44444321 1 11 111101 246898886
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.. +. ...+.. ..++|+++|+++..
T Consensus 207 ~~-G~----~~~~~~----~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 207 AS-GD----PSLIDT----LVRRLAKGGEIVLA 230 (308)
T ss_pred CC-CC----HHHHHH----HHHhhhcCcEEEEE
Confidence 32 21 112222 23789999998843
No 311
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=79.76 E-value=8 Score=44.09 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=51.2
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh--CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA--GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA--GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
++.+||-+|||. |.++..+++. |+.+|+++|.++ -++.|++ .+. ...+ .++. . ...+|+||
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~--~--~~g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIP--E--DLAVDHAF 227 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhh--h--ccCCcEEE
Confidence 678999999986 6666666653 566899999985 5555543 121 1111 1111 0 12489888
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-.. +... ....+ ....++|+++|+++..
T Consensus 228 D~~-G~~~-~~~~~----~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 228 ECV-GGRG-SQSAI----NQIIDYIRPQGTIGLM 255 (341)
T ss_pred ECC-CCCc-cHHHH----HHHHHhCcCCcEEEEE
Confidence 633 2110 11122 2233889999998743
No 312
>PRK13699 putative methylase; Provisional
Probab=79.39 E-value=2.6 Score=46.76 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=40.1
Q ss_pred EEEEEccccccc-cCCCCCCceeEEEEcCchhh------------hChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1477 ITVICRRMEDID-RLPHGIENVDIIVSNWMGHV------------LYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1477 VEFIqGDAEDLe-sLPFEDESFDVVISE~VgH~------------Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
++++++|+.++. .+| ++++|+||.++.... -...+++..++.++.|+|||||.++.
T Consensus 2 ~~l~~gD~le~l~~lp--d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP--DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC--ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 367888887752 245 789999999875431 01224567788899999999998874
No 313
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=79.13 E-value=7.3 Score=44.39 Aligned_cols=96 Identities=19% Similarity=0.226 Sum_probs=53.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc-cccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED-IDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED-LesLPFEDESFDVVI 1501 (1662)
++.+||-+|||. |.++..+|+. |+.+|+++|.++ -++.|++ .|...-+.....+..+ +..+. ....+|+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~-~~~g~d~vi 250 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT-GGFGADVVI 250 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh-CCCCCCEEE
Confidence 688999999875 6666767775 776799999885 5555543 3432111111111111 11011 123589888
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-.. +. ...+... .++|+++|+++..
T Consensus 251 d~~-g~----~~~~~~~----~~~~~~~G~iv~~ 275 (358)
T TIGR03451 251 DAV-GR----PETYKQA----FYARDLAGTVVLV 275 (358)
T ss_pred ECC-CC----HHHHHHH----HHHhccCCEEEEE
Confidence 632 21 1122222 3789999998854
No 314
>KOG2078|consensus
Probab=78.76 E-value=0.79 Score=55.70 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=54.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCc-EEEEEcccccc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDV-ITVICRRMEDI 1487 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDR-VEFIqGDAEDL 1487 (1662)
++..|-|+-||.|-+++.++..++ +|++-|+++ ++++.+.++..|.+... |+++..|+.++
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 778899999999999999999985 899999996 99999999998888765 88888888765
No 315
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=78.75 E-value=12 Score=40.25 Aligned_cols=105 Identities=22% Similarity=0.189 Sum_probs=64.1
Q ss_pred EECCCCcHHHHHHHHh-C-CCEEEEEech--H-HHHH---HHHHHHhcCCCCcEEEEEcccccccc-CCCCCCceeEEEE
Q psy1769 1432 EVGCGMGLLSLFCAEA-G-AKHVISVDCS--V-ITQL---TQEVVEENDCSDVITVICRRMEDIDR-LPHGIENVDIIVS 1502 (1662)
Q Consensus 1432 DIGCGTGlLSL~LARA-G-AKKVTGVDIS--p-MLEi---ARENAreNGLeDRVEFIqGDAEDLes-LPFEDESFDVVIS 1502 (1662)
-||-|.=.+++.+++. + ...++|+-.. + +.+. +.++++...-.....+...|++.+.. .......||.||-
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 4666776778888876 4 5678887665 2 3222 23444332111112334557777651 1123578999999
Q ss_pred cCchhh----------hChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHV----------LYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~----------Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+..... .....++..++..+.++|+++|.|.+.-
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 775443 1234577888888999999999987543
No 316
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=78.04 E-value=7.3 Score=43.58 Aligned_cols=96 Identities=26% Similarity=0.261 Sum_probs=51.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-+|+|. |.++..+|+. |++.|++++.++ -++.+++ .+...-+.....+...+..+. ....+|+|+-
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~-~~~~~d~vid 237 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGADFVINSGQDDVQEIRELT-SGAGADVAIE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcchHHHHHHHh-CCCCCCEEEE
Confidence 688999998864 5566666664 776699999885 4455543 243211111111111111011 1246999986
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..-. ...+... .++|+++|+++..
T Consensus 238 ~~g~-----~~~~~~~----~~~l~~~G~~v~~ 261 (339)
T cd08239 238 CSGN-----TAARRLA----LEAVRPWGRLVLV 261 (339)
T ss_pred CCCC-----HHHHHHH----HHHhhcCCEEEEE
Confidence 3221 1122222 3789999998743
No 317
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=77.96 E-value=12 Score=39.91 Aligned_cols=93 Identities=14% Similarity=0.209 Sum_probs=55.4
Q ss_pred CEEEEECCCCcHHHHHHHHh-CCCEEEEEechHHHHHHHHHHHhcCCC--CcEEEEEccccccc---cC---CCCCCcee
Q psy1769 1428 KIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSVITQLTQEVVEENDCS--DVITVICRRMEDID---RL---PHGIENVD 1498 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL~LARA-GAKKVTGVDISpMLEiARENAreNGLe--DRVEFIqGDAEDLe---sL---PFEDESFD 1498 (1662)
..|+.||||-=.....+... +...++-+|..++++.-++.+...+.. .+++++.+|+.+.. .| .+.....-
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~pt 159 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRPT 159 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSEE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCCe
Confidence 37999999998888777775 233666666666777777666654321 23457889988632 11 23345677
Q ss_pred EEEEcCchhhhChHHHHHHHHHH
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYA 1521 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrA 1521 (1662)
+++++.+..++..+.. ..++..
T Consensus 160 l~i~Egvl~Yl~~~~~-~~ll~~ 181 (183)
T PF04072_consen 160 LFIAEGVLMYLSPEQV-DALLRA 181 (183)
T ss_dssp EEEEESSGGGS-HHHH-HHHHHH
T ss_pred EEEEcchhhcCCHHHH-HHHHHH
Confidence 8889999888865544 444443
No 318
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=77.67 E-value=9.3 Score=43.65 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHH---HHhcCCCCcEEEEEccccccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEV---VEENDCSDVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiAREN---AreNGLeDRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
.+++||-+|+| |. ++..+++.|+++|+.++.+. ..+.+++. +...+ ..+.+...|+.+...+...-..+|
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV--PECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC--CCceeEEechhhhhHHHhhhccCC
Confidence 57789999997 54 33444566888899998873 22223322 22211 123444455543221111113579
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCceeEeeccccch-hhhhcccccccCCCchhh
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA-ATKYSFWHDVYGFDMEPI 1567 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATLYLAPIEDey~-dErIafWenVYGFDMS~L 1567 (1662)
+||......+.+...... + .. ..+|.++..++ .+...|.+..+. ..+..-|....|.+|-..
T Consensus 202 ilINaTp~Gm~~~~~~~~-~-~~-~~~l~~~~~v~----D~vY~P~~T~ll~~A~~~G~~~~~G~~ML~~ 264 (289)
T PRK12548 202 ILVNATLVGMKPNDGETN-I-KD-TSVFRKDLVVA----DTVYNPKKTKLLEDAEAAGCKTVGGLGMLLW 264 (289)
T ss_pred EEEEeCCCCCCCCCCCCC-C-Cc-HHhcCCCCEEE----EecCCCCCCHHHHHHHHCCCeeeCcHHHHHH
Confidence 999855433322111100 0 00 13466666544 233344443322 222223555667666443
No 319
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=77.13 E-value=2.1 Score=46.97 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=58.1
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechH--HHHHHHHHHHhcCCCCcEEEEEcccc-ccccCCCCCCceeEEEE-
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVICRRME-DIDRLPHGIENVDIIVS- 1502 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp--MLEiARENAreNGLeDRVEFIqGDAE-DLesLPFEDESFDVVIS- 1502 (1662)
++++|-+|...=.+-.++.+.|+++|..||.++ .-+..+.++ ..+...|.. ++... .++||++.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~--------ssi~p~df~~~~~~y---~~~fD~~as~ 70 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL--------SSILPVDFAKNWQKY---AGSFDFAASF 70 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc--------ccccHHHHHHHHHHh---hccchhhhee
Confidence 568899999987888888888999999999875 111111111 011111111 11112 267998877
Q ss_pred cCchhh--------hChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHV--------LYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~--------Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
..+.|. +++...+.++ ..+.++||+||.+++
T Consensus 71 ~siEh~GLGRYGDPidp~Gdl~~m-~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 71 SSIEHFGLGRYGDPIDPIGDLRAM-AKIKCVLKPGGLLFL 109 (177)
T ss_pred chhccccccccCCCCCccccHHHH-HHHHHhhccCCeEEE
Confidence 333332 2344456665 566799999999984
No 320
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=76.51 E-value=7.1 Score=46.18 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhC--CCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC--CCCCCceeE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAG--AKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL--PHGIENVDI 1499 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAG--AKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL--PFEDESFDV 1499 (1662)
.++...||.=-|.|..+..++... .++++|+|.++ +++.|++.+...+ +++.+++....++... ....+++|-
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~i~~vDG 99 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELGIGKVDG 99 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcCCCceeE
Confidence 367899999999999999999874 46799999997 9999999887644 6899999988776411 111358888
Q ss_pred EEEcC
Q psy1769 1500 IVSNW 1504 (1662)
Q Consensus 1500 VISE~ 1504 (1662)
|+.++
T Consensus 100 iL~DL 104 (314)
T COG0275 100 ILLDL 104 (314)
T ss_pred EEEec
Confidence 88754
No 321
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=75.67 E-value=2 Score=44.14 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=28.6
Q ss_pred ceeEEEEcCc---hhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1496 NVDIIVSNWM---GHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1496 SFDVVISE~V---gH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+||+|+|-.+ .|.-..++-+..++..+.++|+|||+||++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999332 233334556777889999999999999943
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=74.88 E-value=9.8 Score=43.29 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=50.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEec---hH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDC---SV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDI---Sp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
++.+||-+|||. |.++..+|++ |+ +|++++. ++ -++.|+ +.|.. .+.....+..+.. . ...+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~~~-~---~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAEVK-L---VGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhhhh-h---cCCCCE
Confidence 678999999875 6677777775 66 7999986 33 333333 33432 1111111111111 1 246898
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
||-..-. ...+ ....++|+++|+++..
T Consensus 242 vid~~g~-----~~~~----~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 242 IIEATGV-----PPLA----FEALPALAPNGVVILF 268 (355)
T ss_pred EEECcCC-----HHHH----HHHHHHccCCcEEEEE
Confidence 8874321 1122 2334789999998743
No 323
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=74.37 E-value=14 Score=44.93 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+++|+-+|||. |.....+++. |+ +|+++|.++ -++.|++ .|. ..+ ++.+. + ..+|+||.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e~--v----~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM----EGY----EVM--TMEEA--V----KEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh----cCC----EEc--cHHHH--H----cCCCEEEE
Confidence 789999999997 7665555554 77 799999996 4444443 343 111 22222 1 35799987
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..- ....+. .+..+++++||+++...
T Consensus 264 atG-----~~~~i~---~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 TTG-----NKDIIT---GEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CCC-----CHHHHH---HHHHhcCCCCcEEEEeC
Confidence 431 111222 22247899999987543
No 324
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=74.11 E-value=6.1 Score=46.53 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=54.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC--CC-CCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL--PH-GIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL--PF-EDESFDVV 1500 (1662)
++..+||.=-|.|..+..+++. +..+|+|+|.++ +++.|++++.. ..+++.+++++..++..+ .. ....+|.|
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~--~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgi 97 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK--FDDRFIFIHGNFSNLDEYLKELNGINKVDGI 97 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC--CCTTEEEEES-GGGHHHHHHHTTTTS-EEEE
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh--ccceEEEEeccHHHHHHHHHHccCCCccCEE
Confidence 6789999999999999999986 447999999997 88888877653 357899999998876411 11 23589999
Q ss_pred EEcC
Q psy1769 1501 VSNW 1504 (1662)
Q Consensus 1501 ISE~ 1504 (1662)
+.++
T Consensus 98 L~DL 101 (310)
T PF01795_consen 98 LFDL 101 (310)
T ss_dssp EEE-
T ss_pred EEcc
Confidence 9864
No 325
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=73.99 E-value=13 Score=40.12 Aligned_cols=100 Identities=20% Similarity=0.258 Sum_probs=50.7
Q ss_pred CEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH-HHHHHHH------------HHHhcCCCCcEEEEEccccccccCCC
Q psy1769 1428 KIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV-ITQLTQE------------VVEENDCSDVITVICRRMEDIDRLPH 1492 (1662)
Q Consensus 1428 KRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp-MLEiARE------------NAreNGLeDRVEFIqGDAEDLesLPF 1492 (1662)
++|--||.|- |+ ++..+|+.|. +|+|+|+++ .++...+ .+++..-..++.+. .|..+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred CEEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 3677788886 54 6777777777 899999996 4443321 11111001233322 2333311
Q ss_pred CCCceeEEEEcCch----hhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1493 GIENVDIIVSNWMG----HVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1493 EDESFDVVISE~Vg----H~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...|+++..... .....-..+..+++.+.+.|+++..++..
T Consensus 75 --~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ 119 (185)
T PF03721_consen 75 --KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIE 119 (185)
T ss_dssp --HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEES
T ss_pred --hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEc
Confidence 357887763311 11122346777778888999997777644
No 326
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.98 E-value=7.5 Score=42.92 Aligned_cols=94 Identities=27% Similarity=0.281 Sum_probs=51.7
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccc-cccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRM-EDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDA-EDLesLPFEDESFDVVI 1501 (1662)
++.+||-+|+|. |.++..+|+. |+.+|+++|.++ -++.|++ .+...-+. ..+. ..+..+. ....+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~-~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ-NGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh-CCCCCCEEE
Confidence 678999999875 6666666665 776799999885 4455443 33321111 1111 1111011 123589988
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-.. +. ...+... .++|+++|+++..
T Consensus 193 d~~-G~----~~~~~~~----~~~l~~~G~iv~~ 217 (280)
T TIGR03366 193 EFS-GA----TAAVRAC----LESLDVGGTAVLA 217 (280)
T ss_pred ECC-CC----hHHHHHH----HHHhcCCCEEEEe
Confidence 632 11 1122222 3789999998744
No 327
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.60 E-value=29 Score=36.59 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+.+.+... .++.++.+|+.+...+ ...-
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56789999986543 4445555677 799999875 333332333322 2578888888764311 0001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+|+...
T Consensus 80 ~~id~ii~~a 89 (238)
T PRK05786 80 NAIDGLVVTV 89 (238)
T ss_pred CCCCEEEEcC
Confidence 3568887744
No 328
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=72.58 E-value=2.7 Score=43.45 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDIS 1458 (1662)
+....+|||||.|++...|.+.|. .-+|+|+-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Cccccccc
Confidence 445789999999999999999887 57788864
No 329
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=72.50 E-value=8.2 Score=48.13 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHH
Q psy1769 1424 LLKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQ 1465 (1662)
Q Consensus 1424 dlpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAR 1465 (1662)
..++.+||-+|||. |..+..+++. |+ .|+++|.++ .++.++
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 34678999999997 7777766665 76 699999996 444444
No 330
>PRK05854 short chain dehydrogenase; Provisional
Probab=71.41 E-value=17 Score=41.28 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFE 1493 (1662)
..+++||-.|++.|+ ++..+++.|+ +|+.+..+. -++.+.+.+....-..++.++.+|+.+...+ ...
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999988764 5666666787 788888774 3333333333222123588899998775411 111
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
.+.+|++|.+.
T Consensus 91 ~~~iD~li~nA 101 (313)
T PRK05854 91 GRPIHLLINNA 101 (313)
T ss_pred CCCccEEEECC
Confidence 24689999854
No 331
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.31 E-value=21 Score=42.01 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=59.0
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHH-------hcCCC-----CcEEEEEccccccccCCC
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVE-------ENDCS-----DVITVICRRMEDIDRLPH 1492 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAr-------eNGLe-----DRVEFIqGDAEDLesLPF 1492 (1662)
++|.-||+|+ | .++..++.+|. .|+..|.++ .++.++..+. ..++. .++.+. .++++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~a----- 80 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEAC----- 80 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHHH-----
Confidence 5789999996 4 47777888887 899999995 5555444322 12211 223322 122221
Q ss_pred CCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1493 EDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
-...|+|+-..... .+....++..+.+.++|+.+|.-..
T Consensus 81 -v~~aDlViEavpE~----l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 81 -VADADFIQESAPER----EALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred -hcCCCEEEECCcCC----HHHHHHHHHHHHHhCCCCeEEEECC
Confidence 14679988865433 3455667777888899988554333
No 332
>PLN02740 Alcohol dehydrogenase-like
Probab=71.14 E-value=13 Score=43.06 Aligned_cols=42 Identities=31% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHH
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARE 1466 (1662)
.++.+||-+|||. |.++..+|+. |+.+|+++|.++ -++.|++
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3788999999875 6666666765 676799999885 5555543
No 333
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=70.64 E-value=23 Score=39.55 Aligned_cols=93 Identities=16% Similarity=0.254 Sum_probs=51.4
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||..|||. |.++..+|+. |+.+|++++.++ ..+.+++ .+.. .++..+-..+..+......+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGAD---ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchhhhhhhccCCCccEEEE
Confidence 678888888875 5666666665 666799998875 5554433 2321 1222111111101111245999987
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
..-. ...+ ..+.+.|+++|+++.
T Consensus 238 ~~g~-----~~~~----~~~~~~L~~~G~~v~ 260 (339)
T cd08232 238 ASGA-----PAAL----ASALRVVRPGGTVVQ 260 (339)
T ss_pred CCCC-----HHHH----HHHHHHHhcCCEEEE
Confidence 4221 1122 233488899999884
No 334
>PLN02827 Alcohol dehydrogenase-like
Probab=70.38 E-value=13 Score=43.33 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=29.1
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQ 1465 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAR 1465 (1662)
++.+||-+|+|. |.++..+|++ |+..|+++|.++ -++.|+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 688999999875 6666666665 776799999775 555553
No 335
>PRK06701 short chain dehydrogenase; Provisional
Probab=70.31 E-value=30 Score=38.81 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH--HHHHHHHHHHhcCCCCcEEEEEccccccccCC--C-----C
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVICRRMEDIDRLP--H-----G 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp--MLEiARENAreNGLeDRVEFIqGDAEDLesLP--F-----E 1493 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++ .++.....+...+ .++.++.+|+.+...+. + .
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 67899999987654 5666666677 788887762 3333333333333 35888899987643110 0 0
Q ss_pred CCceeEEEEc
Q psy1769 1494 IENVDIIVSN 1503 (1662)
Q Consensus 1494 DESFDVVISE 1503 (1662)
...+|+||..
T Consensus 122 ~~~iD~lI~~ 131 (290)
T PRK06701 122 LGRLDILVNN 131 (290)
T ss_pred cCCCCEEEEC
Confidence 1368988864
No 336
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=70.19 E-value=27 Score=39.45 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=55.9
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc--------CCC---------CcEEEEEcccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN--------DCS---------DVITVICRRMEDI 1487 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreN--------GLe---------DRVEFIqGDAEDL 1487 (1662)
.+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+++.+... .+. .++.+ ..|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence 3688899986 3 36667777776 799999995 666665443210 110 12332 2333322
Q ss_pred ccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1488 DRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1488 esLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-...|+||...... ......++..+...++++.+|+-.
T Consensus 82 ------~~~aDlVieavpe~----~~~k~~~~~~l~~~~~~~~ii~sn 119 (287)
T PRK08293 82 ------VKDADLVIEAVPED----PEIKGDFYEELAKVAPEKTIFATN 119 (287)
T ss_pred ------hcCCCEEEEeccCC----HHHHHHHHHHHHhhCCCCCEEEEC
Confidence 13579988865422 234555666677778777766433
No 337
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=70.06 E-value=53 Score=38.79 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh----C-CCEEEEEechH-HH-HHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCce
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA----G-AKHVISVDCSV-IT-QLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA----G-AKKVTGVDISp-ML-EiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESF 1497 (1662)
.+...+|+|+|+..-+..+.++ | ..+++.+|++. ++ ..|+..++... .-.|.-+++|.+.-. .+| ...-
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-~l~v~~l~~~~~~~La~~~--~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-GLEVNALCGDYELALAELP--RGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-CCeEeehhhhHHHHHhccc--CCCe
Confidence 5678999999998776666664 3 45899999996 44 44555555432 112566677765422 233 1222
Q ss_pred eEE-EE-cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1498 DII-VS-NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1498 DVV-IS-E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-++ +. ..++.+.+.+ ...++.+++..|+||-+++..
T Consensus 155 Rl~~flGStlGN~tp~e--~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGNLTPGE--CAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccCCChHH--HHHHHHHHHhcCCCcceEEEe
Confidence 222 22 4455554433 455778888999999998754
No 338
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=69.23 E-value=23 Score=39.96 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=56.0
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-------cC-CC--------CcEEEEEcccccccc
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-------ND-CS--------DVITVICRRMEDIDR 1489 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-------NG-Le--------DRVEFIqGDAEDLes 1489 (1662)
+|.-||+|. | .++..+++.|. .|+.+|.++ .++.+.+.+.. .+ +. .++.+ ..+..+.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~-- 78 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAA-- 78 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHh--
Confidence 688899985 3 46677777776 799999995 66655543211 11 00 11221 2233221
Q ss_pred CCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1490 LPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
-...|+||...... ......++..+.+.++++.+|+....+
T Consensus 79 ----~~~aD~Vi~avpe~----~~~k~~~~~~l~~~~~~~~il~~~tSt 119 (288)
T PRK09260 79 ----VADADLVIEAVPEK----LELKKAVFETADAHAPAECYIATNTST 119 (288)
T ss_pred ----hcCCCEEEEeccCC----HHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 14579998754422 233445556667788888776544444
No 339
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.92 E-value=21 Score=39.29 Aligned_cols=93 Identities=25% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-C-CCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-L-PHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-L-PFEDESFDVV 1500 (1662)
.+.+||..|||. |.++..+|+. |+ +|++++.++ ..+.+++ .+.. .++...-..... + ......+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE----LGAD---EVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH----hCCC---EEEcCCCcCHHHHHHHhcCCCceEE
Confidence 567888888873 6777777775 65 699998885 5555543 2332 111111101000 0 0113569998
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...-. ... +..+.+.|+++|.++..
T Consensus 237 id~~g~-----~~~----~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 237 FDFVGT-----QPT----FEDAQKAVKPGGRIVVV 262 (338)
T ss_pred EECCCC-----HHH----HHHHHHHhhcCCEEEEE
Confidence 863211 112 23334889999998844
No 340
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=68.47 E-value=13 Score=39.08 Aligned_cols=94 Identities=30% Similarity=0.364 Sum_probs=51.4
Q ss_pred CCCEEEEECCCC-cHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cC-CCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RL-PHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sL-PFEDESFDVVI 1501 (1662)
++.+||.+|+|. |..+..+++....+|++++.++ ..+.+++ .+.. .++.....+.. .+ ......+|+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD---HVIDYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc---eeccCCcCCHHHHHHHhcCCCCCEEE
Confidence 678999999996 6666666665335899999885 4444433 2221 11111111100 00 01135799998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...-.. ..+ ..+.+.|+++|.++..
T Consensus 207 ~~~~~~-----~~~----~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 207 DAVGGP-----ETL----AQALRLLRPGGRIVVV 231 (271)
T ss_pred ECCCCH-----HHH----HHHHHhcccCCEEEEE
Confidence 743211 122 2334778999998743
No 341
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=67.32 E-value=38 Score=38.72 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=70.9
Q ss_pred cChhhHHHHHHHHHhcccccccccCCCCCCCCCEEEEECCCCcHHHHHHHHh----C-CCEEEEEech-H-HHHHHHHHH
Q psy1769 1396 KDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA----G-AKHVISVDCS-V-ITQLTQEVV 1468 (1662)
Q Consensus 1396 ND~vRnEAYrEAIernkeLfR~LLQkA~dlpGKRVLDIGCGTGlLSL~LARA----G-AKKVTGVDIS-p-MLEiARENA 1468 (1662)
+.......|++.|.+. ++..|+|+|.-.|.-++++|.. | ..+|+++|++ . .-..|++
T Consensus 53 k~p~D~~~yQellw~~--------------~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-- 116 (237)
T COG3510 53 KSPSDMWNYQELLWEL--------------QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-- 116 (237)
T ss_pred CCHHHHHHHHHHHHhc--------------CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--
Confidence 3444455666666521 5778999999999877777764 4 2489999999 2 2233333
Q ss_pred HhcCCCCcEEEEEccccccc------cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1469 EENDCSDVITVICRRMEDID------RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1469 reNGLeDRVEFIqGDAEDLe------sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
..+|.|++++..+.. .+. .+.--+.+|.-..|.. +..|.. ++...++|.-|-+++.....
T Consensus 117 -----~p~i~f~egss~dpai~eqi~~~~--~~y~kIfvilDsdHs~--~hvLAe-l~~~~pllsaG~Y~vVeDs~ 182 (237)
T COG3510 117 -----VPDILFIEGSSTDPAIAEQIRRLK--NEYPKIFVILDSDHSM--EHVLAE-LKLLAPLLSAGDYLVVEDSN 182 (237)
T ss_pred -----CCCeEEEeCCCCCHHHHHHHHHHh--cCCCcEEEEecCCchH--HHHHHH-HHHhhhHhhcCceEEEeccc
Confidence 246999999987754 011 1222333332222322 233433 36677889999998865543
No 342
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.07 E-value=45 Score=37.56 Aligned_cols=98 Identities=19% Similarity=0.319 Sum_probs=57.9
Q ss_pred EEEEECCCC--cHHHHHHHHhCCCEEEEEechH-HHHHHHHH-------HHhcCC-C--------CcEEEEEcccccccc
Q psy1769 1429 IVLEVGCGM--GLLSLFCAEAGAKHVISVDCSV-ITQLTQEV-------VEENDC-S--------DVITVICRRMEDIDR 1489 (1662)
Q Consensus 1429 RVLDIGCGT--GlLSL~LARAGAKKVTGVDISp-MLEiAREN-------AreNGL-e--------DRVEFIqGDAEDLes 1489 (1662)
+|.-||+|. +.++..++..|. .|+++|+++ .++.+++. +.+.+. . .++.+ ..|...+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~~-- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDDL-- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHHh--
Confidence 578899986 457777777777 799999996 55544422 222221 1 12322 2233221
Q ss_pred CCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1490 LPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
...|+||....... .....++..+.+.++++..|+.....+
T Consensus 81 -----~~aDlVi~av~e~~----~~k~~~~~~l~~~~~~~~il~s~ts~~ 121 (282)
T PRK05808 81 -----KDADLVIEAATENM----DLKKKIFAQLDEIAKPEAILATNTSSL 121 (282)
T ss_pred -----ccCCeeeecccccH----HHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 45799888543222 233466677778889988876544443
No 343
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.00 E-value=50 Score=37.37 Aligned_cols=99 Identities=21% Similarity=0.335 Sum_probs=58.3
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc-------CC-C--------CcEEEEEccccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN-------DC-S--------DVITVICRRMEDID 1488 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreN-------GL-e--------DRVEFIqGDAEDLe 1488 (1662)
.+|.-||+|. | .++..++..|. .|+.+|.++ .++.+.+.+..+ +. . .++.+ ..+...+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDLEDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCHHHh-
Confidence 5788899996 3 36777777776 799999995 555544332211 21 0 12332 2233221
Q ss_pred cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
...|+||...... ......++..+...|+++.+|+-...++
T Consensus 82 ------~~aD~Vieavpe~----~~~k~~~~~~l~~~~~~~~ii~s~ts~~ 122 (292)
T PRK07530 82 ------ADCDLVIEAATED----ETVKRKIFAQLCPVLKPEAILATNTSSI 122 (292)
T ss_pred ------cCCCEEEEcCcCC----HHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 3579888854322 2344556667778899998877454444
No 344
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.78 E-value=2.2 Score=46.69 Aligned_cols=47 Identities=21% Similarity=0.185 Sum_probs=34.6
Q ss_pred CCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1490 LPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
.+|.++++|+|+++-+.-++..++.. ..+..+.|+|||||+|-+...
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~-~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGT-SALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHH-HHHHHHHHHhCcCcEEEEEcC
Confidence 46778999999997655555444444 445889999999999875543
No 345
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=66.21 E-value=40 Score=38.20 Aligned_cols=93 Identities=27% Similarity=0.309 Sum_probs=55.5
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc----------CC---------CCcEEEEEcccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN----------DC---------SDVITVICRRME 1485 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreN----------GL---------eDRVEFIqGDAE 1485 (1662)
.+|.-||||. | .++..++..|. .|+.+|.++ .++.+++.+... +. ..++.+. .+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSYE 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCHH
Confidence 4688899996 4 46777777777 799999996 666655443321 11 0112211 1221
Q ss_pred ccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1486 DIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1486 DLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
. + ...|+||...... ......++..+.+.++++.+|+
T Consensus 82 ~---~----~~aDlVieav~e~----~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 82 S---L----SDADFIVEAVPEK----LDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred H---h----CCCCEEEEcCcCc----HHHHHHHHHHHHhhCCCCeEEE
Confidence 1 1 3579988855322 2235566667777888887765
No 346
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=65.89 E-value=11 Score=44.45 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=27.5
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-||||. |. ++..|++.|..+++.+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999995 43 7788888899999999975
No 347
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=65.66 E-value=10 Score=45.73 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh---------CCCEEEEEechH-HHHHHHHHHHh
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA---------GAKHVISVDCSV-ITQLTQEVVEE 1470 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA---------GAKKVTGVDISp-MLEiARENAre 1470 (1662)
.+..++|||+|+|.++..+++. .+.++..||+|+ +...-++.++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 4568999999999988777764 256899999997 66666666554
No 348
>KOG2352|consensus
Probab=65.61 E-value=6.9 Score=48.52 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=68.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc----cCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID----RLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe----sLPFEDESFDV 1499 (1662)
....+|-||-|.|.+..++... +...++||++.+ |++.|+..+....- ++..+...|..++. ....++..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 4567889999999888777664 556899999997 99999887643211 12333333332221 01113568999
Q ss_pred EEEcC--c-h---hhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1500 IVSNW--M-G---HVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1500 VISE~--V-g---H~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
++.+. . . .+...+-.-..++..++..|.|.|.+++
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEE
Confidence 99843 1 1 1223344455677788899999999973
No 349
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.47 E-value=5.6 Score=38.51 Aligned_cols=85 Identities=27% Similarity=0.351 Sum_probs=49.8
Q ss_pred CCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc----cCCCCCCceeEEEEcCchhhh
Q psy1769 1436 GMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID----RLPHGIENVDIIVSNWMGHVL 1509 (1662)
Q Consensus 1436 GTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe----sLPFEDESFDVVISE~VgH~L 1509 (1662)
|.|.++..+|+. | .+|+++|.++ -++.+++ .|.. .++..+-.++. .+. ....+|+||-..-
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g---- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG---- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTSSHHHHHHHHT-TTSSEEEEEESSS----
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---cccccccccccccccccc-ccccceEEEEecC----
Confidence 468888888887 6 6999999997 5555553 3421 22333222111 111 1247999987432
Q ss_pred ChHHHHHHHHHHHHhcccCCeEEEeecCc
Q psy1769 1510 YLDSLINAVVYARDRFLKPHGLILPDRAE 1538 (1662)
Q Consensus 1510 d~EdmLEaLLrALrRLLKPGGrLIPSsAT 1538 (1662)
....++. ...+|+++|+++.....
T Consensus 68 -~~~~~~~----~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 68 -SGDTLQE----AIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp -SHHHHHH----HHHHEEEEEEEEEESST
T ss_pred -cHHHHHH----HHHHhccCCEEEEEEcc
Confidence 1223333 34889999999855433
No 350
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=64.37 E-value=39 Score=40.89 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=63.0
Q ss_pred EEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCc-EEEEEccccccccCCCCCCceeEEEEcCchh
Q psy1769 1429 IVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDV-ITVICRRMEDIDRLPHGIENVDIIVSNWMGH 1507 (1662)
Q Consensus 1429 RVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDR-VEFIqGDAEDLesLPFEDESFDVVISE~VgH 1507 (1662)
.||-|+-.-|.++..++..+...+ .|.--.-...+++++.+++... ++++.. .+. +| +.+|+|+.-+.-.
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~~~--~~~--~~---~~~d~vl~~~PK~ 117 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSI--GDSYISELATRENLRLNGIDESSVKFLDS--TAD--YP---QQPGVVLIKVPKT 117 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCee--ehHHHHHHHHHHHHHHcCCCcccceeecc--ccc--cc---CCCCEEEEEeCCC
Confidence 789999999999999997544211 2322234556778888887643 554432 221 44 5699999865433
Q ss_pred hhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1508 VLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1508 ~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
. ..++.++..+.+.|.+|+.||..
T Consensus 118 ~----~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 118 L----ALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred H----HHHHHHHHHHHhhCCCCCEEEEE
Confidence 2 45666777888999999998744
No 351
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.29 E-value=11 Score=40.97 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=27.5
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-||||. |. ++..|++.|.++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 567899999995 44 7788888899999999976
No 352
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=64.16 E-value=61 Score=35.28 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=60.5
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCC-CCCceeEEEEcC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH-GIENVDIIVSNW 1504 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPF-EDESFDVVISE~ 1504 (1662)
...+|+-|||=+-...+.-......+++..|++. +... +... .|+.-|......+|. -.++||+||+++
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-------RF~~--~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DP 94 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-------RFEQ--FGGD-EFVFYDYNEPEELPEELKGKFDVVVIDP 94 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-------hHHh--cCCc-ceEECCCCChhhhhhhcCCCceEEEECC
Confidence 4579999999885544444122345799999985 1111 1122 344444443322221 136899999998
Q ss_pred chhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1505 VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
.. ..++.+..+...++.++++++.+|...
T Consensus 95 PF---l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 95 PF---LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred CC---CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 76 345677666677767778988888544
No 353
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.08 E-value=33 Score=39.28 Aligned_cols=98 Identities=14% Similarity=0.308 Sum_probs=60.0
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-------cCCC---------CcEEEEEccccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-------NDCS---------DVITVICRRMEDID 1488 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-------NGLe---------DRVEFIqGDAEDLe 1488 (1662)
.+|--||+|+ | .++..++..|. .|+.+|.++ .++.+++.+.. .+.- .+++ ...|...+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh-
Confidence 3788999996 3 47778888887 799999996 66665544322 1110 1222 22333221
Q ss_pred cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcc-cCCeEEEeecCc
Q psy1769 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFL-KPHGLILPDRAE 1538 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLL-KPGGrLIPSsAT 1538 (1662)
...|+||-... ...+....++..+.+++ +|+.+|+-...+
T Consensus 83 ------~~~d~ViEav~----E~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 83 ------ADRQLVIEAVV----EDEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred ------CCCCEEEEecc----cCHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 35799988554 33345566777777778 778777644433
No 354
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.94 E-value=67 Score=35.33 Aligned_cols=77 Identities=8% Similarity=0.095 Sum_probs=43.7
Q ss_pred CCCEEEEECCCC-cH----HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCGM-GL----LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl----LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.++++|-.|++. +. ++..+++.|+ +|+.++.+. ..+.+++...... ..++.++..|+.+...+ ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 578999999862 33 5566666687 688776542 1122222222211 24577888898765311 10
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
.-+++|++|.+.
T Consensus 84 ~~g~ld~lv~na 95 (257)
T PRK08594 84 EVGVIHGVAHCI 95 (257)
T ss_pred hCCCccEEEECc
Confidence 125789988743
No 355
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=61.71 E-value=23 Score=39.60 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred CEEEEECC--CCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc-cccCCCCCCceeEEEE
Q psy1769 1428 KIVLEVGC--GMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED-IDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1428 KRVLDIGC--GTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED-LesLPFEDESFDVVIS 1502 (1662)
.+||-.|+ |.|.++..+|++ |+.+|++++.++ -.+.+++. .|....+.....++.+ +..+. ...+|+|+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~--~~gvd~vid 230 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC--PEGVDVYFD 230 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC--CCCceEEEE
Confidence 78999986 347777777776 665799998875 44444432 3432111111111111 11111 246999986
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.. +. . .+.. ..+.|+++|+++.
T Consensus 231 ~~-g~----~-~~~~----~~~~l~~~G~iv~ 252 (345)
T cd08293 231 NV-GG----E-ISDT----VISQMNENSHIIL 252 (345)
T ss_pred CC-Cc----H-HHHH----HHHHhccCCEEEE
Confidence 32 21 1 1222 2378999999884
No 356
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=61.66 E-value=43 Score=42.73 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCCEEEEECCCCcHHHHH----HHHhCCCEEEEEechH-HHHHHHHHHHhc-----C--CCCcEEEEEccccccccCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLF----CAEAGAKHVISVDCSV-ITQLTQEVVEEN-----D--CSDVITVICRRMEDIDRLPHG 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~----LARAGAKKVTGVDISp-MLEiARENAreN-----G--LeDRVEFIqGDAEDLesLPFE 1493 (1662)
.+++||-+|+. |.++.. |++.|+ +|++++.+. -++...+.+... + ...++.++.+|+.+...+...
T Consensus 79 ~gKvVLVTGAT-GgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGAT-GKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 67788888864 444444 444566 788888774 332222222211 1 113588999999875422111
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
-+.+|+||+..
T Consensus 157 LggiDiVVn~A 167 (576)
T PLN03209 157 LGNASVVICCI 167 (576)
T ss_pred hcCCCEEEEcc
Confidence 24689988853
No 357
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=61.64 E-value=17 Score=42.82 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=48.4
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH----------------------HHHHHHHHHHhcCCCCcEEEEE
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV----------------------ITQLTQEVVEENDCSDVITVIC 1481 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp----------------------MLEiARENAreNGLeDRVEFIq 1481 (1662)
...+||-||||. |. ++..|+++|..+++.+|.+. -++.|++.+++.+-.-.|+.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 567899999995 43 78888888999999998762 1234445555443333456665
Q ss_pred ccccccccCCCCCCceeEEEEcC
Q psy1769 1482 RRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1482 GDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.++.... +...-..+|+||...
T Consensus 103 ~~~~~~~-~~~~~~~~DlVid~~ 124 (338)
T PRK12475 103 TDVTVEE-LEELVKEVDLIIDAT 124 (338)
T ss_pred ccCCHHH-HHHHhcCCCEEEEcC
Confidence 5553211 110014699999843
No 358
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=61.40 E-value=46 Score=36.61 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=27.8
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDIS 1458 (1662)
...+|+-||||. | .++..+++.|.++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999996 4 37888888899899999887
No 359
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=61.21 E-value=26 Score=39.63 Aligned_cols=95 Identities=25% Similarity=0.324 Sum_probs=51.5
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc-ccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME-DIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE-DLesLPFEDESFDVVI 1501 (1662)
++.+||-.|+|. |.++..+|+. |+..|+++|.++ -.+.+++ .+...-+.....+.. .+..+. ....+|+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vl 240 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT-GGKGVDAVI 240 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh-CCCCCcEEE
Confidence 678899888774 5666666665 776799999885 4455443 343211111111111 110011 124689988
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
...-. ...+ ....+.|+++|+++.
T Consensus 241 d~~g~-----~~~~----~~~~~~l~~~G~~v~ 264 (351)
T cd08285 241 IAGGG-----QDTF----EQALKVLKPGGTISN 264 (351)
T ss_pred ECCCC-----HHHH----HHHHHHhhcCCEEEE
Confidence 63221 1122 233477999999873
No 360
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=61.09 E-value=13 Score=45.23 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=47.8
Q ss_pred CEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1428 KIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1428 KRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
++||-||||. |. .+..||+.+...|+..|.+. .++.+..... .+++.++.|+.+.+.+...-..+|+||...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 4799999975 44 45556676767899999994 4444333221 268899999887642211113569999855
Q ss_pred chh
Q psy1769 1505 MGH 1507 (1662)
Q Consensus 1505 VgH 1507 (1662)
..+
T Consensus 77 p~~ 79 (389)
T COG1748 77 PPF 79 (389)
T ss_pred Cch
Confidence 433
No 361
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.05 E-value=59 Score=38.14 Aligned_cols=109 Identities=11% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCC--CCcEEEEEccccccc---cC---CCCCCcee
Q psy1769 1427 DKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDC--SDVITVICRRMEDID---RL---PHGIENVD 1498 (1662)
Q Consensus 1427 GKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGL--eDRVEFIqGDAEDLe---sL---PFEDESFD 1498 (1662)
...|+-||||-=.-+..+-.....+|+-||.-++++.=++.+.+.+. ..+++++..|+++-. .| .+.....=
T Consensus 93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt 172 (297)
T COG3315 93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT 172 (297)
T ss_pred ccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence 35789999996333222222111356666666788777777776653 246899999998432 11 23345667
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
++|++.+..++..+ ....++..+..++.||-.+++..
T Consensus 173 ~~iaEGLl~YL~~~-~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 173 LWIAEGLLMYLPEE-AVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred EEEeccccccCCHH-HHHHHHHHHHHhCCCCceEEEec
Confidence 88999998888655 55677788888888888887554
No 362
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=60.57 E-value=65 Score=36.97 Aligned_cols=100 Identities=18% Similarity=0.310 Sum_probs=59.3
Q ss_pred CCCEEEEECCCCc----HHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMG----LLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTG----lLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.-+.++++.|+-| .+++.+|.. -..++++|-..+ -+...++.+...++.+.++|+.++..+.. ++ .-..+|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~-~~-~~~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEV-MP-GLKGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHH-Hh-hccCCCE
Confidence 4457888865543 234443333 234788888774 56666777777788777899999854321 22 1357898
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
++.+.= .++....+|..+ + |.|.|.++.
T Consensus 119 ~vVDc~-----~~d~~~~vl~~~-~-~~~~GaVVV 146 (218)
T PF07279_consen 119 VVVDCK-----REDFAARVLRAA-K-LSPRGAVVV 146 (218)
T ss_pred EEEeCC-----chhHHHHHHHHh-c-cCCCceEEE
Confidence 887531 234443555443 3 445566553
No 363
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.45 E-value=58 Score=37.06 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=51.9
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-cCC----------CCcEEEEEccccccccCCCC
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-NDC----------SDVITVICRRMEDIDRLPHG 1493 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-NGL----------eDRVEFIqGDAEDLesLPFE 1493 (1662)
++|.-||+|. | .++..+++.|. .|+++|.++ .++.+++.+.. .+. ..++.+ ..|..+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~------ 76 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA------ 76 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH------
Confidence 4688899996 3 46667777776 799999985 55555543211 110 011221 2222221
Q ss_pred CCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1494 DESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-...|+||...... ......++..+..+++++.+|+-.
T Consensus 77 ~~~aDlVi~av~~~----~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 77 VSGADLVIEAVPEK----LELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred hccCCEEEEeccCc----HHHHHHHHHHHHHhCCCCcEEEEC
Confidence 13579888854322 123445556666667666655433
No 364
>KOG2651|consensus
Probab=60.36 E-value=25 Score=43.19 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=32.2
Q ss_pred CCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARE 1466 (1662)
+-..|+|+|+|-|.++.+++-...-+|+|||-|. ..+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 5568999999999999999876344899999996 4444443
No 365
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=60.17 E-value=55 Score=36.69 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=42.4
Q ss_pred CCCEEEEECCCCcHHHHHHHH----hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||-.| |+|.++..+++ .|. +|+++..+. ....+.......+...+++++.+|+.+...+...-..+|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 467899998 45665555544 466 687776653 22222222222222346889999998754111001257988
Q ss_pred EEc
Q psy1769 1501 VSN 1503 (1662)
Q Consensus 1501 ISE 1503 (1662)
|..
T Consensus 82 ih~ 84 (325)
T PLN02989 82 FHT 84 (325)
T ss_pred EEe
Confidence 874
No 366
>KOG3924|consensus
Probab=60.00 E-value=24 Score=43.27 Aligned_cols=104 Identities=16% Similarity=0.186 Sum_probs=62.7
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-CCCEEEEEechH-HHHHHH-------HHHHhcCC-CCcEEEEEccccccccCCCCCC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQ-------EVVEENDC-SDVITVICRRMEDIDRLPHGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-GAKKVTGVDISp-MLEiAR-------ENAreNGL-eDRVEFIqGDAEDLesLPFEDE 1495 (1662)
++....|+|.|.|.+..++|.. +++.-+|+|+.. ..+.|. ...+..|. ...++.++++.........-..
T Consensus 192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~~ 271 (419)
T KOG3924|consen 192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQT 271 (419)
T ss_pred CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHhh
Confidence 6778899999999887776664 677788998873 222222 22222333 3457788887765331000024
Q ss_pred ceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1496 NVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1496 SFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
..++|+++.+.. +++..+ .+ ..+..-|++|.++|
T Consensus 272 eatvi~vNN~~F--dp~L~l-r~-~eil~~ck~gtrIi 305 (419)
T KOG3924|consen 272 EATVIFVNNVAF--DPELKL-RS-KEILQKCKDGTRII 305 (419)
T ss_pred cceEEEEecccC--CHHHHH-hh-HHHHhhCCCcceEe
Confidence 689999976543 222222 22 24456788999987
No 367
>PRK07063 short chain dehydrogenase; Provisional
Probab=59.65 E-value=42 Score=36.24 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++ .++.+.+.+.......++.++.+|+.+...+. ..-
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999987654 5566666687 799999874 44444444443222346888899987643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||.+.
T Consensus 85 g~id~li~~a 94 (260)
T PRK07063 85 GPLDVLVNNA 94 (260)
T ss_pred CCCcEEEECC
Confidence 4689988743
No 368
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.81 E-value=89 Score=34.26 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=44.3
Q ss_pred CCCCEEEEECCCCc-H----HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------C
Q psy1769 1425 LKDKIVLEVGCGMG-L----LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------P 1491 (1662)
Q Consensus 1425 lpGKRVLDIGCGTG-l----LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------P 1491 (1662)
..+++||-.|+++| . ++..+++.|+ +|+.++.++ ..+.+.+.....+ .+.++.+|+.+...+ .
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHH
Confidence 36789999998752 3 4555666677 688888774 3233333322211 245677887764311 0
Q ss_pred CCCCceeEEEEcC
Q psy1769 1492 HGIENVDIIVSNW 1504 (1662)
Q Consensus 1492 FEDESFDVVISE~ 1504 (1662)
...+++|++|.+.
T Consensus 84 ~~~g~ld~lv~nA 96 (258)
T PRK07533 84 EEWGRLDFLLHSI 96 (258)
T ss_pred HHcCCCCEEEEcC
Confidence 0114789999854
No 369
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=58.81 E-value=39 Score=38.96 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQ 1465 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAR 1465 (1662)
++.+||-+|+|. |.++..+|+. |+..|+++|.++ -++.++
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~ 228 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAK 228 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 678999999864 5666666665 776799999885 555554
No 370
>PRK07985 oxidoreductase; Provisional
Probab=58.48 E-value=88 Score=35.29 Aligned_cols=75 Identities=21% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH---HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV---ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp---MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.+. .++.+.+.+...+ .++.++.+|+.+...+ ..
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 67899999976654 5666666787 687776541 2333333333333 3577888888764311 00
Q ss_pred CCCceeEEEEc
Q psy1769 1493 GIENVDIIVSN 1503 (1662)
Q Consensus 1493 EDESFDVVISE 1503 (1662)
.-+.+|++|.+
T Consensus 125 ~~g~id~lv~~ 135 (294)
T PRK07985 125 ALGGLDIMALV 135 (294)
T ss_pred HhCCCCEEEEC
Confidence 11467988874
No 371
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=58.46 E-value=40 Score=38.79 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHH
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQ 1465 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAR 1465 (1662)
.++.+||-+|+|. |.++..+|+. |+.+|+++|.++ -++.|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAK 226 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3678999998864 5566666665 776899999875 455553
No 372
>PRK07806 short chain dehydrogenase; Provisional
Probab=58.44 E-value=69 Score=34.16 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH--HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HG 1493 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp--MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FE 1493 (1662)
.+++||-.|+..|+ ++..+++.|. +|+++..+. .++.+...+...+ .++.++.+|+.+...+. ..
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 56789999975442 4444555576 688877642 3333333333322 35788889987754110 00
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
-+.+|+||...
T Consensus 82 ~~~~d~vi~~a 92 (248)
T PRK07806 82 FGGLDALVLNA 92 (248)
T ss_pred CCCCcEEEECC
Confidence 13589888643
No 373
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=58.21 E-value=21 Score=39.47 Aligned_cols=33 Identities=27% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+|+-||||. |. ++..|++.|..+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999995 44 7888888899999999887
No 374
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=57.67 E-value=27 Score=40.29 Aligned_cols=63 Identities=19% Similarity=0.311 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCcHHHHHHHHhC------CCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccc
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEAG------AKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDID 1488 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARAG------AKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLe 1488 (1662)
++..++|+|||.|.++.+++..- ...++.||-...-..+-..++.......++=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCceEEEEEEeeccc
Confidence 56789999999999999999862 2478999987411122233333221124666777777765
No 375
>PRK06128 oxidoreductase; Provisional
Probab=57.57 E-value=82 Score=35.40 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH---HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV---ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp---MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.+..+. .++...+.+...+ .++.++.+|+.+...+ ..
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889999976653 5566666677 677665542 2233333333333 3577888898764311 00
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
.-+.+|+||.+.
T Consensus 131 ~~g~iD~lV~nA 142 (300)
T PRK06128 131 ELGGLDILVNIA 142 (300)
T ss_pred HhCCCCEEEECC
Confidence 013689999854
No 376
>PRK08324 short chain dehydrogenase; Validated
Probab=57.36 E-value=43 Score=42.54 Aligned_cols=76 Identities=24% Similarity=0.247 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FE 1493 (1662)
..+++||-.|++.|+ ++..+++.|+ +|+++|.++ -++.+.+.+... .++.++.+|+.+...+. ..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 367899999975442 4445555677 799999985 444433333221 35888888887643110 00
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
.+.+|+||...
T Consensus 496 ~g~iDvvI~~A 506 (681)
T PRK08324 496 FGGVDIVVSNA 506 (681)
T ss_pred cCCCCEEEECC
Confidence 13689998844
No 377
>PRK06197 short chain dehydrogenase; Provisional
Probab=57.18 E-value=47 Score=37.20 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=46.5
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFE 1493 (1662)
..+++||-.|+..|+ ++..+++.|+ +|++++.+. .++.+.+.+....-..++.++.+|+.+...+ ...
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 467899988875543 4455556677 788887763 3333333333211123588889998775411 001
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
.+.+|+||.+.
T Consensus 93 ~~~iD~li~nA 103 (306)
T PRK06197 93 YPRIDLLINNA 103 (306)
T ss_pred CCCCCEEEECC
Confidence 14689998854
No 378
>PRK07576 short chain dehydrogenase; Provisional
Probab=56.95 E-value=94 Score=34.11 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=44.2
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..++..|+ +|++++.++ -++...+.+...+ .++.++.+|+.+...+. ...
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 67789999864432 4445555677 699999874 3333333333222 34678888887633110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
..+|+||...
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3689998743
No 379
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=56.82 E-value=25 Score=39.23 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc-cccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED-IDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED-LesLPFEDESFDVVI 1501 (1662)
++.+||..|+|. |..+..+|+. |...|++++.++ ..+.+++ .+...-+.....+..+ +..+. ....+|+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~-~~~~~d~vl 241 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT-GGRGVDCVI 241 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc-CCCCCcEEE
Confidence 677888888753 6666666665 555788987775 4444443 2321111111111111 11011 125699998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
...-. ...+ ....+.|+++|+++.
T Consensus 242 d~~g~-----~~~~----~~~~~~l~~~G~~v~ 265 (347)
T cd05278 242 EAVGF-----EETF----EQAVKVVRPGGTIAN 265 (347)
T ss_pred EccCC-----HHHH----HHHHHHhhcCCEEEE
Confidence 63221 1122 333478899999873
No 380
>PRK10083 putative oxidoreductase; Provisional
Probab=55.77 E-value=49 Score=37.02 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=28.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHH-h-CCCEEEEEechH-HHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAE-A-GAKHVISVDCSV-ITQLTQ 1465 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LAR-A-GAKKVTGVDISp-MLEiAR 1465 (1662)
++.+||-+|||. |.++..+|+ . |+..|++++.++ -.+.++
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~ 203 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAK 203 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence 678899999764 556666776 3 887899999875 444444
No 381
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=55.58 E-value=52 Score=37.58 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=49.0
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCC-CEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGA-KHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGA-KKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE 1503 (1662)
.+|.-||+|. | .++..+++.|. ..|+++|.++ .++.++ ..++.. . ...+..+. + ...|+||..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~----~~g~~~--~-~~~~~~~~--~----~~aDvViia 73 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR----ELGLGD--R-VTTSAAEA--V----KGADLVILC 73 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH----hCCCCc--e-ecCCHHHH--h----cCCCEEEEC
Confidence 5788999886 3 35555666664 4799999986 444443 233211 1 11222221 1 357999885
Q ss_pred CchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1504 WMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1504 ~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
..... ...++..+...+++++.++
T Consensus 74 vp~~~------~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 74 VPVGA------SGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred CCHHH------HHHHHHHHHhhCCCCCEEE
Confidence 53322 2334445556788887654
No 382
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=55.13 E-value=83 Score=36.03 Aligned_cols=85 Identities=19% Similarity=0.083 Sum_probs=48.7
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-.|||. |.++..+|+. |+ +|++++.++ -++.|++ .|... ++. ..+.. .+.+|+++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~----~Ga~~---vi~--~~~~~-----~~~~d~~i~ 229 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALA----LGAAS---AGG--AYDTP-----PEPLDAAIL 229 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHH----hCCce---ecc--ccccC-----cccceEEEE
Confidence 688999999864 5556666665 66 699999885 4444443 44321 111 11111 135787654
Q ss_pred -cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 -NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 -E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.... ..+ ....++|+++|+++..
T Consensus 230 ~~~~~------~~~----~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 230 FAPAG------GLV----PPALEALDRGGVLAVA 253 (329)
T ss_pred CCCcH------HHH----HHHHHhhCCCcEEEEE
Confidence 2221 122 2233789999998753
No 383
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=54.89 E-value=45 Score=38.63 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=49.1
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH--HHHHHHHHHHhcCCCCcEEEEE-ccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV--ITQLTQEVVEENDCSDVITVIC-RRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp--MLEiARENAreNGLeDRVEFIq-GDAEDLesLPFEDESFDVV 1500 (1662)
++.+||-+|||. |.++..+|+. |+ +|++++.++ ..+.++ ..|.. .++. .+...+..+. ..+|+|
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~----~~Ga~---~vi~~~~~~~~~~~~---~~~D~v 251 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAIN----RLGAD---SFLVSTDPEKMKAAI---GTMDYI 251 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHH----hCCCc---EEEcCCCHHHHHhhc---CCCCEE
Confidence 577888899875 6777777776 66 688888774 222222 23431 1221 1111221111 258988
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|-. ++. ...+. ...++|+++|+++..
T Consensus 252 id~-~g~----~~~~~----~~~~~l~~~G~iv~v 277 (360)
T PLN02586 252 IDT-VSA----VHALG----PLLGLLKVNGKLITL 277 (360)
T ss_pred EEC-CCC----HHHHH----HHHHHhcCCcEEEEe
Confidence 863 221 11222 233789999998743
No 384
>PRK05872 short chain dehydrogenase; Provisional
Probab=54.83 E-value=95 Score=34.90 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFE 1493 (1662)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++ .++...+.+. ....+..+.+|+.+...+ ...
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG---GDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 367899999977654 5566666687 799998874 3333332222 123456666887764311 000
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
.+.+|+||.+.
T Consensus 83 ~g~id~vI~nA 93 (296)
T PRK05872 83 FGGIDVVVANA 93 (296)
T ss_pred cCCCCEEEECC
Confidence 14689999854
No 385
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=54.71 E-value=55 Score=37.02 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=48.4
Q ss_pred EEEEECCCC--cHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1429 IVLEVGCGM--GLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1429 RVLDIGCGT--GlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
+|.-||+|. |.++..+++.|. +|+++|.++ .++.+.+ .+. +.....+.+. -...|+||....
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~~~-------~~~aDlVilavp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIE----RGL---VDEASTDLSL-------LKDCDLVILALP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----CCC---cccccCCHhH-------hcCCCEEEEcCC
Confidence 577789885 456777777766 799999985 5544432 222 1111111111 146799888543
Q ss_pred hhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1506 GHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
.. ....++..+...++++.+ |...+
T Consensus 67 ~~------~~~~~~~~l~~~l~~~~i-i~d~~ 91 (279)
T PRK07417 67 IG------LLLPPSEQLIPALPPEAI-VTDVG 91 (279)
T ss_pred HH------HHHHHHHHHHHhCCCCcE-EEeCc
Confidence 22 223344555566776644 44433
No 386
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.58 E-value=1.2e+02 Score=34.61 Aligned_cols=99 Identities=20% Similarity=0.305 Sum_probs=57.1
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHH-------hcCCC---------CcEEEEEccccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVE-------ENDCS---------DVITVICRRMEDID 1488 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAr-------eNGLe---------DRVEFIqGDAEDLe 1488 (1662)
++|.-||+|. | .++..++..|. .|+++|.++ .++.+++.+. ..+.- .++. ...+.+.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIR-CTTNLEEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceE-eeCCHHHh-
Confidence 4688899995 4 46777777776 899999995 5555443322 11210 1121 12222221
Q ss_pred cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
...|+||.... ........++..+...++++.+|+-...++
T Consensus 82 ------~~aD~Vieav~----e~~~~k~~v~~~l~~~~~~~~il~s~tS~i 122 (295)
T PLN02545 82 ------RDADFIIEAIV----ESEDLKKKLFSELDRICKPSAILASNTSSI 122 (295)
T ss_pred ------CCCCEEEEcCc----cCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 35799888543 223345566666777788888776444443
No 387
>KOG1201|consensus
Probab=54.57 E-value=32 Score=40.89 Aligned_cols=77 Identities=25% Similarity=0.322 Sum_probs=55.4
Q ss_pred CCCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1424 LLKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1424 dlpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
...++.||-=|.|.|+ +++.+|+.|+ +++.+|++. -.+...+.++..| ++.....|+.+.+++ ..
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 3478899999999985 8899999988 799999995 4444444455444 588888888775421 11
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
+-+.+|++|.+.
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 235789999853
No 388
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.37 E-value=94 Score=33.96 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=44.2
Q ss_pred CCCEEEEECCC--CcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCG--MGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCG--TGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.+++||-.|++ .|+ ++..+++.|+ +|+.++.+. ..+.+.+. . ...+.++..|+.+...+ ..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~-~----~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL-V----DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh-c----cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 67899999986 332 5666666787 688887663 22222222 1 13477888898764311 00
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
.-+++|++|.+.
T Consensus 80 ~~g~iD~lv~nA 91 (252)
T PRK06079 80 RVGKIDGIVHAI 91 (252)
T ss_pred HhCCCCEEEEcc
Confidence 114689998854
No 389
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=54.37 E-value=47 Score=33.15 Aligned_cols=74 Identities=26% Similarity=0.257 Sum_probs=49.9
Q ss_pred EEEEECCCCcH---HHHHHHHhCCCEEEEEech---HHHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCCC
Q psy1769 1429 IVLEVGCGMGL---LSLFCAEAGAKHVISVDCS---VITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGIE 1495 (1662)
Q Consensus 1429 RVLDIGCGTGl---LSL~LARAGAKKVTGVDIS---pMLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFEDE 1495 (1662)
+||-+|++.|+ ++..+++.|+..|+.+..+ +.++.....+...+ .++.++..|+.+.+.+ .....
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 68889988764 6666777778788999887 34555544455444 5799999998765311 11125
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|++|.+.
T Consensus 80 ~ld~li~~a 88 (167)
T PF00106_consen 80 PLDILINNA 88 (167)
T ss_dssp SESEEEEEC
T ss_pred ccccccccc
Confidence 799999843
No 390
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.16 E-value=83 Score=34.53 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=42.5
Q ss_pred CCCEEEEECCC-CcHH----HHHHHHhCCCEEEEEechH---HHHHHHHHHHhcCCCCcEEEEEccccccccC-------
Q psy1769 1426 KDKIVLEVGCG-MGLL----SLFCAEAGAKHVISVDCSV---ITQLTQEVVEENDCSDVITVICRRMEDIDRL------- 1490 (1662)
Q Consensus 1426 pGKRVLDIGCG-TGlL----SL~LARAGAKKVTGVDISp---MLEiARENAreNGLeDRVEFIqGDAEDLesL------- 1490 (1662)
.+++||-.|+| ++.+ +..+++.|+ +|+.++.+. .++...+.+ ..++.++..|+.+...+
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRL-----PEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhc-----CCCCcEEeCCCCCHHHHHHHHHHH
Confidence 57899999984 3444 444555577 788887652 223222211 12466788888765311
Q ss_pred CCCCCceeEEEEcC
Q psy1769 1491 PHGIENVDIIVSNW 1504 (1662)
Q Consensus 1491 PFEDESFDVVISE~ 1504 (1662)
....+++|++|.+.
T Consensus 80 ~~~~g~iD~li~nA 93 (256)
T PRK07889 80 REHVDGLDGVVHSI 93 (256)
T ss_pred HHHcCCCcEEEEcc
Confidence 00125799998854
No 391
>PRK07062 short chain dehydrogenase; Provisional
Probab=52.74 E-value=62 Score=35.04 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+.+.+....-..++.++.+|+.+...+ ...-
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 67899999987764 5666666777 699998884 4444433333321123577888888775311 0012
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||.+.
T Consensus 86 g~id~li~~A 95 (265)
T PRK07062 86 GGVDMLVNNA 95 (265)
T ss_pred CCCCEEEECC
Confidence 4689988854
No 392
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=52.68 E-value=44 Score=38.32 Aligned_cols=96 Identities=15% Similarity=0.080 Sum_probs=51.2
Q ss_pred CCCEEEEECCCC--cHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCC-----CcEEEEEccccccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM--GLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCS-----DVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT--GlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLe-----DRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
..++|+-||+|. |.++..+++.|. .|+.+..++ .+ .+..+++. ....+....+.. .+.....+|
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~-~~----~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~D 74 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD-YE----AVRENGLQVDSVHGDFHLPPVQAYR---SAEDMPPCD 74 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC-HH----HHHhCCeEEEeCCCCeeecCceEEc---chhhcCCCC
Confidence 346899999996 457777888775 688777664 11 12333321 111111000101 000124789
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+||...-.+.+ ..++..+..+|.+++.+++..
T Consensus 75 ~vilavK~~~~------~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 75 WVLVGLKTTAN------ALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred EEEEEecCCCh------HhHHHHHhhhcCCCCEEEEec
Confidence 98875432222 233445557788888877543
No 393
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=52.46 E-value=65 Score=31.07 Aligned_cols=85 Identities=25% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCcHHHHHHHHh---CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-CCCCceeEEEEcCchhhh
Q psy1769 1435 CGMGLLSLFCAEA---GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-HGIENVDIIVSNWMGHVL 1509 (1662)
Q Consensus 1435 CGTGlLSL~LARA---GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-FEDESFDVVISE~VgH~L 1509 (1662)
||.|.++..+++. +...|+.+|.++ .++.+++ .+ +.++.+|..+...+. ..-+.+|.|++..-
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 4445555555553 445899999996 5544443 23 568999998754111 11257898888432
Q ss_pred ChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1510 YLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1510 d~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
..+.-+. +....+-+.|...++
T Consensus 72 ~d~~n~~--~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 72 DDEENLL--IALLARELNPDIRII 93 (116)
T ss_dssp SHHHHHH--HHHHHHHHTTTSEEE
T ss_pred CHHHHHH--HHHHHHHHCCCCeEE
Confidence 1122222 222336667777766
No 394
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=52.03 E-value=64 Score=37.21 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=53.2
Q ss_pred CEEEEECCCC--cHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC----CcEEEEEccccccccCCCCCCceeEE
Q psy1769 1428 KIVLEVGCGM--GLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS----DVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1428 KRVLDIGCGT--GlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe----DRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
++|+-||||. |.++..|++.|. .|+.++-+. .++..++ ..|+. .....+...... +...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~---~~Gl~i~~~g~~~~~~~~~~~----~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ---AGGLTLVEQGQASLYAIPAET----ADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh---cCCeEEeeCCcceeeccCCCC----cccccccCEE
Confidence 4799999997 557888888876 699998874 3333332 12321 000111100000 1112479998
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
|...=.+. +..++..+..+|.++..+++...
T Consensus 75 iv~vK~~~------~~~al~~l~~~l~~~t~vv~lQN 105 (305)
T PRK05708 75 LLACKAYD------AEPAVASLAHRLAPGAELLLLQN 105 (305)
T ss_pred EEECCHHh------HHHHHHHHHhhCCCCCEEEEEeC
Confidence 87432121 23344556678889888775543
No 395
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=51.90 E-value=78 Score=33.12 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=47.2
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcCc
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWM 1505 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~V 1505 (1662)
+|-=||+|. | .++..|++.|. .|++.|.++ .++.+. ..+ +. ...+..++. ...|+|++...
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~----~~g----~~-~~~s~~e~~------~~~dvvi~~v~ 66 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALA----EAG----AE-VADSPAEAA------EQADVVILCVP 66 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHH----HTT----EE-EESSHHHHH------HHBSEEEE-SS
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhH----Hhh----hh-hhhhhhhHh------hcccceEeecc
Confidence 566788875 3 35666666677 799999986 332222 222 22 334555543 46799988432
Q ss_pred hhhhChHHHHHHHHHH--HHhcccCCeEEE
Q psy1769 1506 GHVLYLDSLINAVVYA--RDRFLKPHGLIL 1533 (1662)
Q Consensus 1506 gH~Ld~EdmLEaLLrA--LrRLLKPGGrLI 1533 (1662)
.....+.++.. +...|++|.++|
T Consensus 67 -----~~~~v~~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 67 -----DDDAVEAVLFGENILAGLRPGKIII 91 (163)
T ss_dssp -----SHHHHHHHHHCTTHGGGS-TTEEEE
T ss_pred -----cchhhhhhhhhhHHhhccccceEEE
Confidence 33345555555 557777777776
No 396
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=51.86 E-value=19 Score=44.95 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=49.8
Q ss_pred CCCEEEEECCCC-cHH-HHHHHHhCCCEEEE-----EechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM-GLL-SLFCAEAGAKHVIS-----VDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlL-SL~LARAGAKKVTG-----VDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
.+++|+-||||+ |.. ++-+...|...++| ||... ...+.+...|+. ..++.+.. ...|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~---~s~~kA~~dGF~------v~~~~Ea~------~~AD 99 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKR---ASWRKATENGFK------VGTYEELI------PQAD 99 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEecccccccccc---chHHHHHhcCCc------cCCHHHHH------HhCC
Confidence 789999999998 441 11111124432322 33332 122333344542 23444432 4789
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+|++-.... ....+...+...||+|..|.|+-
T Consensus 100 vVviLlPDt------~q~~v~~~i~p~LK~Ga~L~fsH 131 (487)
T PRK05225 100 LVINLTPDK------QHSDVVRAVQPLMKQGAALGYSH 131 (487)
T ss_pred EEEEcCChH------HHHHHHHHHHhhCCCCCEEEecC
Confidence 999844333 13344466779999999998764
No 397
>KOG0725|consensus
Probab=51.75 E-value=1.9e+02 Score=33.31 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCC-CCcEEEEEcccccccc--------CC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDC-SDVITVICRRMEDIDR--------LP 1491 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGL-eDRVEFIqGDAEDLes--------LP 1491 (1662)
+.++++|--|.+.|+ +++.+++.|+ +|+.++.++ .++.+.+.+...+. ..++..+.+|+...+. +.
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 378899999998875 7888899888 788888884 55555444444333 3568888888875320 01
Q ss_pred CCCCceeEEEEcC
Q psy1769 1492 HGIENVDIIVSNW 1504 (1662)
Q Consensus 1492 FEDESFDVVISE~ 1504 (1662)
.-.+++|++|.+.
T Consensus 85 ~~~GkidiLvnna 97 (270)
T KOG0725|consen 85 KFFGKIDILVNNA 97 (270)
T ss_pred HhCCCCCEEEEcC
Confidence 0036899999854
No 398
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.03 E-value=1.6e+02 Score=32.94 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCCCCEEEEECCC-CcH----HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------
Q psy1769 1424 LLKDKIVLEVGCG-MGL----LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL------- 1490 (1662)
Q Consensus 1424 dlpGKRVLDIGCG-TGl----LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL------- 1490 (1662)
...++++|-.|++ ++. ++..+++.|+ +|+.+..++ ..+.+.+.....+ .+.++.+|+.+...+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHH
Confidence 3467889999985 223 5566666688 677776543 2333333333322 245677888764311
Q ss_pred CCCCCceeEEEEcC
Q psy1769 1491 PHGIENVDIIVSNW 1504 (1662)
Q Consensus 1491 PFEDESFDVVISE~ 1504 (1662)
...-+.+|++|.+.
T Consensus 83 ~~~~g~iD~lv~nA 96 (272)
T PRK08159 83 EKKWGKLDFVVHAI 96 (272)
T ss_pred HHhcCCCcEEEECC
Confidence 10124689999854
No 399
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=50.93 E-value=24 Score=38.99 Aligned_cols=33 Identities=36% Similarity=0.388 Sum_probs=26.5
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-||||. | .++..|++.|.++++.+|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 467899999995 4 47888888899999988644
No 400
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=50.81 E-value=67 Score=41.64 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=64.7
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc-------C-C--------CCcEEEEEccccc
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN-------D-C--------SDVITVICRRMED 1486 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreN-------G-L--------eDRVEFIqGDAED 1486 (1662)
+-.+|--||+|+ | .++..+|..|. .|+.+|.++ .++.+++.+... + + -.+|++. .|...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 389 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSYAG 389 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH
Confidence 445799999997 3 47888888887 799999995 666665544321 1 1 0123322 12221
Q ss_pred cccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1487 IDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1487 LesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+ ...|+||-..+.. -+....++.++.++++|+.+|.-...++
T Consensus 390 ~-------~~aDlViEav~E~----l~~K~~vf~~l~~~~~~~~ilasnTS~l 431 (714)
T TIGR02437 390 F-------DNVDIVVEAVVEN----PKVKAAVLAEVEQHVREDAILASNTSTI 431 (714)
T ss_pred h-------cCCCEEEEcCccc----HHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 1 3689988765433 2456677888889999998876555443
No 401
>PRK06914 short chain dehydrogenase; Provisional
Probab=50.76 E-value=70 Score=34.95 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-C-----CCCc
Q psy1769 1427 DKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-H-----GIEN 1496 (1662)
Q Consensus 1427 GKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-F-----EDES 1496 (1662)
+++||-.|++.|. ++..+++.|+ +|++++-++ -++...+.+...+...++.++.+|+.+...+. + .-+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 4678999975543 4445566677 788888764 33333333333343456889999987743110 0 0136
Q ss_pred eeEEEEcC
Q psy1769 1497 VDIIVSNW 1504 (1662)
Q Consensus 1497 FDVVISE~ 1504 (1662)
+|+||...
T Consensus 82 id~vv~~a 89 (280)
T PRK06914 82 IDLLVNNA 89 (280)
T ss_pred eeEEEECC
Confidence 79888743
No 402
>PRK05867 short chain dehydrogenase; Provisional
Probab=50.34 E-value=67 Score=34.67 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.+. .++...+.+...+ .++.++.+|+.+...+ ...-
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 67899999987764 5666667787 799998884 4444444444333 3577888888764311 0001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+++|++|.+.
T Consensus 85 g~id~lv~~a 94 (253)
T PRK05867 85 GGIDIAVCNA 94 (253)
T ss_pred CCCCEEEECC
Confidence 4789998743
No 403
>KOG0821|consensus
Probab=50.19 E-value=23 Score=40.96 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID 1488 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe 1488 (1662)
....-|++||.|.|.++..+..+|+.+...||++. ++.-.+-..++.. .+..+..+|+..+.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFK 111 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceeh
Confidence 36778999999999999999999988999999985 5554444333322 36778888887654
No 404
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=49.98 E-value=36 Score=37.83 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCcHHHHHHHH----hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||-.|+ +|.++..+++ .|. +|++++.+. ............+...+++++.+|+.+...+...-..+|+|
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V 80 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV 80 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence 3578998884 5666555554 466 788887663 22222221111122346899999997743111001357988
Q ss_pred EE
Q psy1769 1501 VS 1502 (1662)
Q Consensus 1501 IS 1502 (1662)
|.
T Consensus 81 ih 82 (322)
T PLN02662 81 FH 82 (322)
T ss_pred EE
Confidence 77
No 405
>PRK08339 short chain dehydrogenase; Provisional
Probab=49.70 E-value=73 Score=35.08 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP------HGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP------FEDE 1495 (1662)
.++++|-.|++.|+ ++..+++.|+ +|+.++.++ -++.+.+.+.... ..++.++.+|+.+...+. ..-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 67889999988764 6667777787 799999874 4444443333221 235888889987753110 0114
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|++|.+.
T Consensus 85 ~iD~lv~na 93 (263)
T PRK08339 85 EPDIFFFST 93 (263)
T ss_pred CCcEEEECC
Confidence 689988743
No 406
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=49.48 E-value=83 Score=36.55 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=25.2
Q ss_pred CCCCEEEEECCCC-cHHHHHHHH-hCCCEEEEEechH
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAE-AGAKHVISVDCSV 1459 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LAR-AGAKKVTGVDISp 1459 (1662)
..+.+|+-||||. |......+. .|+..|+.++.++
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~ 212 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY 212 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4688999999985 554333333 3777899999985
No 407
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=49.30 E-value=83 Score=33.53 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCCCCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1423 HLLKDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
....+++|.-||+|. |. ++..+...|+ +|+++|.+. ... .....+ + ...+++++. ...|+
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell------~~aDi 94 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE----GADEFG----V--EYVSLDELL------AQADI 94 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH----HHHHTT----E--EESSHHHHH------HH-SE
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh----hccccc----c--eeeehhhhc------chhhh
Confidence 345789999999986 44 3333333477 899999994 222 111111 2 333555542 46899
Q ss_pred EEEcCch-----hhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1500 IVSNWMG-----HVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1500 VISE~Vg-----H~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
|+..... +++. + .. ...||+|.+||
T Consensus 95 v~~~~plt~~T~~li~-~----~~----l~~mk~ga~lv 124 (178)
T PF02826_consen 95 VSLHLPLTPETRGLIN-A----EF----LAKMKPGAVLV 124 (178)
T ss_dssp EEE-SSSSTTTTTSBS-H----HH----HHTSTTTEEEE
T ss_pred hhhhhccccccceeee-e----ee----eeccccceEEE
Confidence 9985432 3332 1 12 26789999887
No 408
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=49.13 E-value=50 Score=38.05 Aligned_cols=91 Identities=23% Similarity=0.294 Sum_probs=51.3
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc----ccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME----DIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE----DLesLPFEDESFD 1498 (1662)
++.+||-.|+|. |.++..+|++ |+..|+++|.++ -.+.+++ .+.. .++..+-. .+..+. ...+|
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~--~~~~d 256 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE----LGAT---HVINPKEEDLVAAIREIT--GGGVD 256 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---EEecCCCcCHHHHHHHHh--CCCCc
Confidence 678888888764 6666666665 777899999885 4444433 2321 22221111 111011 24689
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+|+-..-. ...+. ...+.|+++|+++.
T Consensus 257 ~vld~~g~-----~~~~~----~~~~~l~~~G~~v~ 283 (365)
T cd08278 257 YALDTTGV-----PAVIE----QAVDALAPRGTLAL 283 (365)
T ss_pred EEEECCCC-----cHHHH----HHHHHhccCCEEEE
Confidence 99863211 11222 23478899999884
No 409
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=48.72 E-value=75 Score=36.73 Aligned_cols=94 Identities=22% Similarity=0.238 Sum_probs=52.1
Q ss_pred CCCEEEEECC-C-CcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEc-cccc-cccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGC-G-MGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICR-RMED-IDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGC-G-TGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqG-DAED-LesLPFEDESFDV 1499 (1662)
++.+||-.|+ | .|.++..+|+. |+ +|++++.++ -++.+++ ..|...-+..... ++.+ +..+. ...+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~---~lGa~~vi~~~~~~~~~~~i~~~~--~~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKN---KLGFDEAFNYKEEPDLDAALKRYF--PEGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH---hcCCCEEEECCCcccHHHHHHHHC--CCCcEE
Confidence 6889999998 3 47787777776 66 699988875 4444432 2343211111111 2211 11011 246899
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|+-.. +. ..+. ...++|+++|+++..
T Consensus 232 v~d~v-G~-----~~~~----~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 232 YFDNV-GG-----DMLD----AALLNMKIHGRIAVC 257 (348)
T ss_pred EEECC-CH-----HHHH----HHHHHhccCCEEEEE
Confidence 98632 21 1222 223789999998743
No 410
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=48.47 E-value=59 Score=37.49 Aligned_cols=95 Identities=16% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEc--cccc-cccCCCCCCcee
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICR--RMED-IDRLPHGIENVD 1498 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqG--DAED-LesLPFEDESFD 1498 (1662)
.++.+||-+|+|. |.++..+|+. |+..|++++.++ -.+.+++ .+....+..... +..+ +..+. .+.+|
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~--~~~~d 255 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT--DGGVD 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh--CCCCc
Confidence 3678888888764 5555556664 776788998764 4455433 233211111111 1111 11111 24689
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhccc-CCeEEEe
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLK-PHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLK-PGGrLIP 1534 (1662)
+|+.. ++. ...+.. ..+.|+ ++|+++.
T Consensus 256 ~vid~-~g~----~~~~~~----~~~~l~~~~G~~v~ 283 (365)
T cd05279 256 YAFEV-IGS----ADTLKQ----ALDATRLGGGTSVV 283 (365)
T ss_pred EEEEC-CCC----HHHHHH----HHHHhccCCCEEEE
Confidence 99863 221 112222 236788 9999874
No 411
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.24 E-value=70 Score=36.17 Aligned_cols=95 Identities=25% Similarity=0.341 Sum_probs=49.9
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcc----ccccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRR----MEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGD----AEDLesLPFEDESFD 1498 (1662)
++.+||-.|+|. |.++..+|+. |+..|++++.++ ..+.+++. +...-+.....+ ...+..+. ....+|
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~~~-~~~~~d 236 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAELL-GGKGPD 236 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHHHh-CCCCCC
Confidence 678888888765 5666666665 665588888774 44444332 322111111111 11111011 134599
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+|+-..-. ...+ ....+.|+++|+++.
T Consensus 237 ~vld~~g~-----~~~~----~~~~~~l~~~G~~v~ 263 (343)
T cd05285 237 VVIECTGA-----ESCI----QTAIYATRPGGTVVL 263 (343)
T ss_pred EEEECCCC-----HHHH----HHHHHHhhcCCEEEE
Confidence 99873221 1122 223478999999874
No 412
>PRK07677 short chain dehydrogenase; Provisional
Probab=47.88 E-value=76 Score=34.24 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=46.1
Q ss_pred CEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCCCc
Q psy1769 1428 KIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGIEN 1496 (1662)
Q Consensus 1428 KRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FEDES 1496 (1662)
++||-.|++.|+ ++..+++.|+ +|++++.++ .++.+.+.+...+ .++.++.+|+.+...+. ..-+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 578888987753 5555666677 799998874 4444444443322 46888989887643110 00136
Q ss_pred eeEEEEcC
Q psy1769 1497 VDIIVSNW 1504 (1662)
Q Consensus 1497 FDVVISE~ 1504 (1662)
+|+||...
T Consensus 79 id~lI~~a 86 (252)
T PRK07677 79 IDALINNA 86 (252)
T ss_pred ccEEEECC
Confidence 89988743
No 413
>KOG1209|consensus
Probab=47.86 E-value=79 Score=36.88 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=45.5
Q ss_pred CCCEEEEECCCCcHHHHHHHH----hCCCEEEEEech-H-HHHHHHHHHHhcCCCCcEEEEEcccccccc--------CC
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCS-V-ITQLTQEVVEENDCSDVITVICRRMEDIDR--------LP 1491 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDIS-p-MLEiARENAreNGLeDRVEFIqGDAEDLes--------LP 1491 (1662)
..+.||-.||..|.++..+++ .|+ .|+++--+ + |.+.+.+. + +.....|+.+.+. ..
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~----g----l~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQF----G----LKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhh----C----CeeEEeccCChHHHHHHHHHHhh
Confidence 567899999999987666655 477 79998776 3 77666432 2 4455566654321 12
Q ss_pred CCCCceeEEEEc
Q psy1769 1492 HGIENVDIIVSN 1503 (1662)
Q Consensus 1492 FEDESFDVVISE 1503 (1662)
+.+++.|+++-+
T Consensus 77 ~~~Gkld~L~NN 88 (289)
T KOG1209|consen 77 NPDGKLDLLYNN 88 (289)
T ss_pred CCCCceEEEEcC
Confidence 236788988864
No 414
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.75 E-value=1.8e+02 Score=32.17 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=43.7
Q ss_pred CCCEEEEECCCC--cH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCGM--GL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGT--Gl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.++++|-.|++. |+ ++..+++.|+ +|+.++.++ ..+.+++.....+ ...++..|+.+...+ ..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHH
Confidence 578899999965 42 5566777787 688777664 2233333333222 123567788764311 00
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
.-+++|++|.+.
T Consensus 83 ~~g~iDilVnna 94 (260)
T PRK06603 83 KWGSFDFLLHGM 94 (260)
T ss_pred HcCCccEEEEcc
Confidence 125799998854
No 415
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.69 E-value=49 Score=41.21 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=72.5
Q ss_pred CCCEEEEECC-CCc------HHHHHHHHhCCC-EEEEEech-H-HHHHHHHHHHhcCCCCcEEEEEccccccc-c-----
Q psy1769 1426 KDKIVLEVGC-GMG------LLSLFCAEAGAK-HVISVDCS-V-ITQLTQEVVEENDCSDVITVICRRMEDID-R----- 1489 (1662)
Q Consensus 1426 pGKRVLDIGC-GTG------lLSL~LARAGAK-KVTGVDIS-p-MLEiARENAreNGLeDRVEFIqGDAEDLe-s----- 1489 (1662)
++.+||=+|- |+| -++.++.+.|.+ -++++|+- + +++..+......++ .|+..+...-+ .
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v----~~f~~~~~~~Pv~Iak~a 174 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGV----PFFGSGTEKDPVEIAKAA 174 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCC----ceecCCCCCCHHHHHHHH
Confidence 5677888863 444 466666665542 37788988 5 78888888776553 44443222111 0
Q ss_pred C-CCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1490 L-PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1490 L-PFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+ .+....+|+||.+..+-+...+.+++++ .++...++|.=+|++..+..
T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El-~~Ik~~~~P~E~llVvDam~ 224 (451)
T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDEL-KEIKEVINPDETLLVVDAMI 224 (451)
T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHH-HHHHhhcCCCeEEEEEeccc
Confidence 0 1123578999999887777778888887 77889999999988665443
No 416
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=47.64 E-value=39 Score=33.63 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred EECCCCc--HHHHHHH--Hh-CCCEEEEEechH-HHHHHHHH--HHhcCCCCcEEEEEc
Q psy1769 1432 EVGCGMG--LLSLFCA--EA-GAKHVISVDCSV-ITQLTQEV--VEENDCSDVITVICR 1482 (1662)
Q Consensus 1432 DIGCGTG--lLSL~LA--RA-GAKKVTGVDISp-MLEiAREN--AreNGLeDRVEFIqG 1482 (1662)
|||++.| .....++ .. ...+|+++|.++ .++..+++ +..+.....+++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~ 59 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPY 59 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEe
Confidence 8999999 4444433 23 245899999997 77887777 555433333444443
No 417
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=47.60 E-value=41 Score=39.87 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=55.6
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEEcC
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVISE~ 1504 (1662)
.+++...|+|+-.|.++..+.+.+. .|++||--+|....- .. ..|+-...|-..+. | .....|-.||++
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL~----dt---g~v~h~r~DGfk~~--P-~r~~idWmVCDm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSLM----DT---GQVTHLREDGFKFR--P-TRSNIDWMVCDM 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhhh----cc---cceeeeeccCcccc--c-CCCCCceEEeeh
Confidence 3889999999999999999999876 899999887654322 22 35777777777764 2 347899999987
Q ss_pred chh
Q psy1769 1505 MGH 1507 (1662)
Q Consensus 1505 VgH 1507 (1662)
+..
T Consensus 279 VEk 281 (358)
T COG2933 279 VEK 281 (358)
T ss_pred hcC
Confidence 654
No 418
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=47.48 E-value=99 Score=31.15 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV 1459 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp 1459 (1662)
.+++|+-+|||. | .++..+++.|...|+.+|.++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 578999999973 2 234444444556899999884
No 419
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=47.47 E-value=44 Score=40.43 Aligned_cols=99 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCCCCCEEEEECCCC-cHHHHHHHH-hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1423 HLLKDKIVLEVGCGM-GLLSLFCAE-AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1423 ~dlpGKRVLDIGCGT-GlLSL~LAR-AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
+...+.+|.-||.|. |..+..+|- .|+ .|+-+|++. -+...... +..++..+-.....+.+ .-.+.|+
T Consensus 164 pGV~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~-----f~~rv~~~~st~~~iee---~v~~aDl 234 (371)
T COG0686 164 PGVLPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDL-----FGGRVHTLYSTPSNIEE---AVKKADL 234 (371)
T ss_pred CCCCCccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHh-----hCceeEEEEcCHHHHHH---HhhhccE
Confidence 334567888899886 655444444 456 899999994 33333322 22467777777666541 1258999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
||...+.-. +.....+.+++.+.||||+.+|
T Consensus 235 vIgaVLIpg---akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 235 VIGAVLIPG---AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred EEEEEEecC---CCCceehhHHHHHhcCCCcEEE
Confidence 999654332 2333445555568899999987
No 420
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=47.46 E-value=47 Score=36.38 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=45.8
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH--------------------HHHHHHHHHHhcCCCCcEEEEEcc
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV--------------------ITQLTQEVVEENDCSDVITVICRR 1483 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp--------------------MLEiARENAreNGLeDRVEFIqGD 1483 (1662)
...+||-||||. | .++..|+..|.++++.+|... -++.+++.+++.+-.-+++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 467899999996 3 367777788999999998551 123444445443333345555444
Q ss_pred ccccc-cCCCCCCceeEEEEcC
Q psy1769 1484 MEDID-RLPHGIENVDIIVSNW 1504 (1662)
Q Consensus 1484 AEDLe-sLPFEDESFDVVISE~ 1504 (1662)
+.+.. .+ -..||+||+..
T Consensus 100 ~~~~~~~~---~~~~dvVi~~~ 118 (197)
T cd01492 100 ISEKPEEF---FSQFDVVVATE 118 (197)
T ss_pred ccccHHHH---HhCCCEEEECC
Confidence 43211 01 14799999843
No 421
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=47.27 E-value=42 Score=36.00 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.6
Q ss_pred EEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1429 IVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1429 RVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
+||-||||. |. ++..+++.|..+++.+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 478899995 54 7788888899899999876
No 422
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.13 E-value=64 Score=36.92 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=29.8
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARE 1466 (1662)
++.+||-+|||. |.++..+|+. |+ +|+++|.++ -++.|++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 688999999965 6676767765 66 799999885 5555543
No 423
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=46.90 E-value=73 Score=35.26 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=48.0
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++++|.-||+|+ |. .++-|...|..-+++..... ..+. +++.|+. ..++.+.. ...|+|+.
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~----A~~~Gf~------v~~~~eAv------~~aDvV~~ 66 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEK----AKADGFE------VMSVAEAV------KKADVVML 66 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHH----HHHTT-E------CCEHHHHH------HC-SEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHH----HHHCCCe------eccHHHHH------hhCCEEEE
Confidence 678999999997 43 45555556774334444333 3333 4455642 33444432 46899988
Q ss_pred cCchhhhChHHHHHHHH-HHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVV-YARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLL-rALrRLLKPGGrLIPSs 1536 (1662)
-. ++.....++ ..+...|++|-.|+|.-
T Consensus 67 L~------PD~~q~~vy~~~I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 67 LL------PDEVQPEVYEEEIAPNLKPGATLVFAH 95 (165)
T ss_dssp -S-------HHHHHHHHHHHHHHHS-TT-EEEESS
T ss_pred eC------ChHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 32 233344444 66778999999998664
No 424
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.87 E-value=46 Score=33.74 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1429 IVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1429 RVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
+||-||||. |. ++..|++.|.++++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 478899984 54 6777888899899999855
No 425
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=46.79 E-value=89 Score=33.63 Aligned_cols=77 Identities=21% Similarity=0.290 Sum_probs=47.9
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFE 1493 (1662)
..+++||-.|++.|+ ++..+++.|+ +|+.++.++ .++.+.+.++..+ .++.++.+|+.+...+ ...
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 368899999976643 4555556677 799999874 4444444444333 3588888888764311 000
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
-+++|+||...
T Consensus 86 ~~~id~vi~~a 96 (256)
T PRK06124 86 HGRLDILVNNV 96 (256)
T ss_pred cCCCCEEEECC
Confidence 14679988743
No 426
>PRK06172 short chain dehydrogenase; Provisional
Probab=46.79 E-value=88 Score=33.58 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+.+.+...+ .++.++.+|+.+...+. ...
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 57899999986653 5555666677 799999884 4444444444332 46888999987643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+++|+||...
T Consensus 83 g~id~li~~a 92 (253)
T PRK06172 83 GRLDYAFNNA 92 (253)
T ss_pred CCCCEEEECC
Confidence 3679999854
No 427
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=46.54 E-value=60 Score=36.80 Aligned_cols=96 Identities=22% Similarity=0.266 Sum_probs=50.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc-cccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED-IDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED-LesLPFEDESFDVVI 1501 (1662)
++.+||-.|+|. |.++..+|+. |+..|++++.++ -.+.+++ .+...-+.....++.+ +..+. ....+|+|+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~-~~~~~d~vi 246 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT-GGGGVDVSF 246 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh-CCCCCCEEE
Confidence 678888888753 4455555554 666899998775 5555543 2332111111111111 10011 123599998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
-..-. ...+ ....+.|+++|+++..
T Consensus 247 d~~g~-----~~~~----~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 247 DCAGV-----QATL----DTAIDALRPRGTAVNV 271 (351)
T ss_pred ECCCC-----HHHH----HHHHHhccCCCEEEEE
Confidence 73211 1122 2334789999998743
No 428
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=46.50 E-value=1.4e+02 Score=33.28 Aligned_cols=93 Identities=22% Similarity=0.193 Sum_probs=48.9
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCC---CcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCS---DVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAreNGLe---DRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
+|+-||||. | .++..+++.|. .|+.++.++ .++..+ ..++. ........-..+. . +...+|+||.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~---~-~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALN----ENGLRLEDGEITVPVLAADDP---A-ELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHH----HcCCcccCCceeecccCCCCh---h-HcCCCCEEEE
Confidence 688899986 3 36666677665 799999863 333332 22331 1111000001111 1 1157899888
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
..-.+. +..++..+...|.++..+++..
T Consensus 73 a~k~~~------~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 73 AVKAYQ------LPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred eccccc------HHHHHHHHhhhcCCCCEEEEec
Confidence 543221 3344455566777777666443
No 429
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=46.33 E-value=90 Score=40.47 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=63.3
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-------cC-C--------CCcEEEEEccccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-------ND-C--------SDVITVICRRMEDID 1488 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-------NG-L--------eDRVEFIqGDAEDLe 1488 (1662)
.+|.-||+|+ | .++..+|..|. .|+.+|+++ .++.+++.+.. .+ + ..++++. .|...+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHHh-
Confidence 5799999998 4 47888888887 899999995 66665544322 11 1 1233322 222221
Q ss_pred cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
...|+||-..+.. -+....++..+.++++|+.+|.-...++
T Consensus 391 ------~~aDlViEav~E~----l~~K~~vf~~l~~~~~~~~ilasNTSsl 431 (715)
T PRK11730 391 ------ERVDVVVEAVVEN----PKVKAAVLAEVEQKVREDTILASNTSTI 431 (715)
T ss_pred ------cCCCEEEecccCc----HHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 3678888754433 2456677788888899998876554433
No 430
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=46.30 E-value=80 Score=36.01 Aligned_cols=96 Identities=20% Similarity=0.229 Sum_probs=49.7
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc----ccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME----DIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE----DLesLPFEDESFD 1498 (1662)
++.+||-.|+|. |.++..+|+. |+++|++++.++ -.+.++ ..+...-+.....+.. .+..+. ....+|
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~d 251 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT-GGRGAD 251 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh-CCCCCc
Confidence 677888888764 5555555555 666899998775 333333 3343211111111110 111011 124689
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+|+...-. ...+.. ..+.|+++|+++..
T Consensus 252 ~vid~~g~-----~~~~~~----~~~~l~~~G~~v~~ 279 (361)
T cd08231 252 VVIEASGH-----PAAVPE----GLELLRRGGTYVLV 279 (361)
T ss_pred EEEECCCC-----hHHHHH----HHHHhccCCEEEEE
Confidence 99863211 112222 23789999998843
No 431
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=46.17 E-value=98 Score=34.79 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=51.0
Q ss_pred CCCEEEEECC-C-CcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEc-ccccc-ccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGC-G-MGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICR-RMEDI-DRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGC-G-TGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqG-DAEDL-esLPFEDESFDV 1499 (1662)
++.+||-.|+ | .|.++..+|+. |+ +|++++.++ -.+.++ ..|...-+..... +..+. ..+. ...+|+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~----~lGa~~vi~~~~~~~~~~~~~~~~--~~gvdv 210 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLK----KLGFDVAFNYKTVKSLEETLKKAS--PDGYDC 210 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH----HcCCCEEEeccccccHHHHHHHhC--CCCeEE
Confidence 6789998885 3 47777777776 66 799888775 444443 3343211111110 11111 1011 246999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|+-.. +. + .+... .++|+++|+++..
T Consensus 211 v~d~~-G~----~-~~~~~----~~~l~~~G~iv~~ 236 (325)
T TIGR02825 211 YFDNV-GG----E-FSNTV----IGQMKKFGRIAIC 236 (325)
T ss_pred EEECC-CH----H-HHHHH----HHHhCcCcEEEEe
Confidence 98632 21 1 12222 3789999999843
No 432
>PRK07890 short chain dehydrogenase; Provisional
Probab=46.03 E-value=99 Score=33.13 Aligned_cols=76 Identities=25% Similarity=0.320 Sum_probs=48.1
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+.+.+...+ .++.++..|+.+...+. ..-
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 57889999986654 5566666687 799999885 4444444443323 35788999987643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 81 g~~d~vi~~a 90 (258)
T PRK07890 81 GRVDALVNNA 90 (258)
T ss_pred CCccEEEECC
Confidence 4689988844
No 433
>KOG1098|consensus
Probab=45.76 E-value=23 Score=45.54 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-C-CCEEEEEechH
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-G-AKHVISVDCSV 1459 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-G-AKKVTGVDISp 1459 (1662)
+...||||||..|.|...+++. + ..-|+|||+-+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 6778999999999999999886 3 23699999986
No 434
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=45.56 E-value=40 Score=40.01 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=46.9
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH--------------------HHHHHHHHHHhcCCCCcEEEEEcc
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV--------------------ITQLTQEVVEENDCSDVITVICRR 1483 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp--------------------MLEiARENAreNGLeDRVEFIqGD 1483 (1662)
...+||-||||. |. ++..|++.|.++++.+|.+. -++.|++.+++.+-.-+|+.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 567999999995 43 67888888999999888651 134455555544433345544444
Q ss_pred cccc--ccCCCCCCceeEEEEc
Q psy1769 1484 MEDI--DRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1484 AEDL--esLPFEDESFDVVISE 1503 (1662)
+... ..+- ..+|+||..
T Consensus 107 i~~~~~~~~~---~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDEL---RDADVILDG 125 (355)
T ss_pred cCHHHHHHHH---hCCCEEEEC
Confidence 4321 0011 469999984
No 435
>KOG2912|consensus
Probab=45.52 E-value=23 Score=42.66 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=51.9
Q ss_pred EEEECCCCcHH-HHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-----CCCCceeEEEE
Q psy1769 1430 VLEVGCGMGLL-SLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-----HGIENVDIIVS 1502 (1662)
Q Consensus 1430 VLDIGCGTGlL-SL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-----FEDESFDVVIS 1502 (1662)
=+|||.|+-.+ .+.-++...-..+|+|+.+ .+..|..++.++++...+.+++....... ++ ..+.-||.+.|
T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktl-l~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTL-LMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhc-chhhhccCccceeeEEec
Confidence 37998887443 2222222223688999998 68999999999999998988877543321 11 11346999999
Q ss_pred cCchh
Q psy1769 1503 NWMGH 1507 (1662)
Q Consensus 1503 E~VgH 1507 (1662)
++.++
T Consensus 185 NPPFf 189 (419)
T KOG2912|consen 185 NPPFF 189 (419)
T ss_pred CCchh
Confidence 87544
No 436
>PRK09242 tropinone reductase; Provisional
Probab=45.25 E-value=1.1e+02 Score=33.16 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=47.9
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.+. -++...+.+....-..++.++.+|+.+...+ ...-
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 67899999987653 5566666677 799998874 4444444343321124688888888764211 0012
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+++|+||...
T Consensus 87 g~id~li~~a 96 (257)
T PRK09242 87 DGLHILVNNA 96 (257)
T ss_pred CCCCEEEECC
Confidence 4689988744
No 437
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=45.02 E-value=1e+02 Score=34.79 Aligned_cols=95 Identities=19% Similarity=0.273 Sum_probs=49.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc-ccccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME-DIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE-DLesLPFEDESFDVVI 1501 (1662)
++.+||-.|||. |.++..+|+. |+.+|++++.++ -.+.+++ .+...-+.....+.. .+..+. ....+|+|+
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vl 240 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT-DGRGVDVVI 240 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh-CCCCCCEEE
Confidence 567777788753 4455555554 645789988875 3344432 333211222111211 111011 124699998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
... . ....+ ..+.+.|+++|+++.
T Consensus 241 d~~-g----~~~~~----~~~~~~l~~~g~~v~ 264 (345)
T cd08286 241 EAV-G----IPATF----ELCQELVAPGGHIAN 264 (345)
T ss_pred ECC-C----CHHHH----HHHHHhccCCcEEEE
Confidence 643 1 11122 333488999999874
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=44.87 E-value=1.1e+02 Score=34.46 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=51.1
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-c---C--CCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-N---D--CSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAre-N---G--LeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
+|.-||+|. | .++..+++.|. .|+.+|.++ .++..++.... . + +...+.+ ..+..+.. ...|+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~D~ 74 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA-TTDLAEAL------ADADL 74 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE-eCCHHHHH------hCCCE
Confidence 688889885 3 46666667666 699999985 44443322100 0 0 0001221 12222211 35799
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
||...... .++.++..+...++++..++...
T Consensus 75 vi~~v~~~------~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 75 ILVAVPSQ------ALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred EEEeCCHH------HHHHHHHHHHhhcCCCCEEEEEe
Confidence 88855432 34455556667788887776544
No 439
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=44.47 E-value=12 Score=38.65 Aligned_cols=55 Identities=13% Similarity=0.114 Sum_probs=37.2
Q ss_pred cEEEEEccccccc-cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEE
Q psy1769 1476 VITVICRRMEDID-RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533 (1662)
Q Consensus 1476 RVEFIqGDAEDLe-sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLI 1533 (1662)
.+++..+|+.+.. .+. ..||+|+.+.+.-...++-+-..++..+.+++++||.+.
T Consensus 32 ~L~L~~gDa~~~l~~l~---~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~ 87 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLD---ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLA 87 (124)
T ss_dssp EEEEEES-HHHHHHHB----T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEEcHHHHHHHhCc---ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEE
Confidence 3567788886642 123 689999998766655555555678888899999999987
No 440
>PRK09291 short chain dehydrogenase; Provisional
Probab=44.10 E-value=62 Score=34.62 Aligned_cols=73 Identities=21% Similarity=0.202 Sum_probs=43.0
Q ss_pred CEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-CCCCceeEEEE
Q psy1769 1428 KIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-HGIENVDIIVS 1502 (1662)
Q Consensus 1428 KRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-FEDESFDVVIS 1502 (1662)
++||-.||+.|+ ++..+++.|+ +|+++..++ -++..+......+ ..+.++.+|+.+...+. .....+|+||.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 478888876543 3444555576 788888764 3333333333333 24788888887643111 01237899988
Q ss_pred c
Q psy1769 1503 N 1503 (1662)
Q Consensus 1503 E 1503 (1662)
+
T Consensus 80 ~ 80 (257)
T PRK09291 80 N 80 (257)
T ss_pred C
Confidence 4
No 441
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=44.09 E-value=73 Score=41.53 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=64.5
Q ss_pred CCCEEEEECCCC--cHHHHHHHHhCCCEEEEEechH-HHHHHHHHHHhc-------C-CC--------CcEEEEEccccc
Q psy1769 1426 KDKIVLEVGCGM--GLLSLFCAEAGAKHVISVDCSV-ITQLTQEVVEEN-------D-CS--------DVITVICRRMED 1486 (1662)
Q Consensus 1426 pGKRVLDIGCGT--GlLSL~LARAGAKKVTGVDISp-MLEiARENAreN-------G-Le--------DRVEFIqGDAED 1486 (1662)
+-.+|--||+|+ +.++..++..|. .|+.+|.++ .++.+.+.+... + +. .++++. .|...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~ 411 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG 411 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH
Confidence 335799999997 347788888887 799999995 766665554321 1 10 233322 22222
Q ss_pred cccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1487 IDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1487 LesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
+ ...|+||-..+. ..+....++..+.++++|+.+|.-...++
T Consensus 412 ~-------~~aDlViEAv~E----~l~~K~~vf~~l~~~~~~~~ilasNTSsl 453 (737)
T TIGR02441 412 F-------KNADMVIEAVFE----DLSLKHKVIKEVEAVVPPHCIIASNTSAL 453 (737)
T ss_pred h-------ccCCeehhhccc----cHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence 1 367888765443 33456778888889999998887555443
No 442
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=44.07 E-value=79 Score=37.06 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=52.8
Q ss_pred CCCEEEEECCCC--cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccc-cCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGM--GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDID-RLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGT--GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLe-sLPFEDESFDVV 1500 (1662)
++.+||-.|+.. |.++..+|++ |+ .++++-.++ -.+. ++..|-..-+.+...|+.+-. ++. ....+|+|
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~----~~~lGAd~vi~y~~~~~~~~v~~~t-~g~gvDvv 215 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLEL----LKELGADHVINYREEDFVEQVRELT-GGKGVDVV 215 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHH----HHhcCCCEEEcCCcccHHHHHHHHc-CCCCceEE
Confidence 588999998543 6788888886 66 555555553 2223 334454333444444433321 111 12469999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
+...-... +... ...|+++|+++..
T Consensus 216 ~D~vG~~~------~~~~----l~~l~~~G~lv~i 240 (326)
T COG0604 216 LDTVGGDT------FAAS----LAALAPGGRLVSI 240 (326)
T ss_pred EECCCHHH------HHHH----HHHhccCCEEEEE
Confidence 98443222 2222 3778999998754
No 443
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=43.94 E-value=1.2e+02 Score=32.93 Aligned_cols=89 Identities=25% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
++.+||-.|||. |..+..+|+. |+.+|++++.++ .++.+++. +..+.+..... .. .. ...+|+|+.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~--~~--~~~~d~vl~ 165 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DE--IG--GRGADVVIE 165 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hh--hc--CCCCCEEEE
Confidence 678888888875 6666666665 664599999874 55554432 21111111100 11 11 246899886
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
.... ...+ ....+.|+++|.++.
T Consensus 166 ~~~~-----~~~~----~~~~~~l~~~g~~~~ 188 (277)
T cd08255 166 ASGS-----PSAL----ETALRLLRDRGRVVL 188 (277)
T ss_pred ccCC-----hHHH----HHHHHHhcCCcEEEE
Confidence 3221 1122 222377899999874
No 444
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=43.79 E-value=88 Score=34.67 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=50.1
Q ss_pred CCCEEEEECC--CCcHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccc----ccCCCCCCce
Q psy1769 1426 KDKIVLEVGC--GMGLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDI----DRLPHGIENV 1497 (1662)
Q Consensus 1426 pGKRVLDIGC--GTGlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDL----esLPFEDESF 1497 (1662)
++.+||-.|+ |.|.++..+|+. |+ +|++++.++ -.+.+++ .|.. .++...-.++ ..+. ...+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~----~Ga~---~vi~~~~~~~~~~v~~~~--~~gv 212 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE----LGFD---AVFNYKTVSLEEALKEAA--PDGI 212 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH----cCCC---EEEeCCCccHHHHHHHHC--CCCc
Confidence 6788998884 346677777776 66 699988775 4444443 3432 1222211111 1111 2468
Q ss_pred eEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1498 DIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1498 DVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
|+|+...- . ..+ ....++|+++|+++.
T Consensus 213 d~vld~~g-~-----~~~----~~~~~~l~~~G~iv~ 239 (329)
T cd08294 213 DCYFDNVG-G-----EFS----STVLSHMNDFGRVAV 239 (329)
T ss_pred EEEEECCC-H-----HHH----HHHHHhhccCCEEEE
Confidence 99886322 1 122 223478999999874
No 445
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=43.76 E-value=62 Score=36.61 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccc----ccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRME----DIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAE----DLesLPFEDESFD 1498 (1662)
++.+||-+|||. |.++..+|+. |++.|++++.++ -.+.+++ .+.. .++...-. .+..+. .+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~--~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA--GGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh--CCCCc
Confidence 567888888764 5565666665 777899998775 4444432 2331 22221111 111111 12689
Q ss_pred EEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+|+...- . ...+. ...+.|+++|+++.
T Consensus 246 ~vid~~g-~----~~~~~----~~~~~l~~~g~~v~ 272 (350)
T cd08240 246 AVIDFVN-N----SATAS----LAFDILAKGGKLVL 272 (350)
T ss_pred EEEECCC-C----HHHHH----HHHHHhhcCCeEEE
Confidence 9986321 1 11222 23478899999873
No 446
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.64 E-value=2.2e+02 Score=31.85 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCCEEEEECCCC--cH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CC
Q psy1769 1426 KDKIVLEVGCGM--GL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PH 1492 (1662)
Q Consensus 1426 pGKRVLDIGCGT--Gl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PF 1492 (1662)
.++++|-.|++. |+ ++..+++.|+ +|+.++.+. ..+.+.+..... ..+.++.+|+.+...+ ..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHh
Confidence 567899999875 32 5666777787 688777663 223333332221 2356778888774311 00
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
.-+++|++|.+.
T Consensus 81 ~~g~iD~linnA 92 (262)
T PRK07984 81 VWPKFDGFVHSI 92 (262)
T ss_pred hcCCCCEEEECC
Confidence 124689999854
No 447
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=43.49 E-value=38 Score=40.22 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=27.2
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-||||. |. ++..|++.|.++++.+|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 567899999984 54 6778888899999999876
No 448
>PLN02494 adenosylhomocysteinase
Probab=43.43 E-value=87 Score=39.41 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=48.7
Q ss_pred CCCEEEEECCCC-cHHHHHHHH-hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAE-AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LAR-AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+++|+-+|+|. |......++ .|+ +|+++|.++ -...|. ..++. +. ++.+. + ...|+||+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~----~~G~~----vv--~leEa--l----~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQAL----MEGYQ----VL--TLEDV--V----SEADIFVT 315 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHH----hcCCe----ec--cHHHH--H----hhCCEEEE
Confidence 789999999996 543333333 477 799999986 222222 22321 22 33332 2 35799998
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..-... ++ .......||+||+|+..
T Consensus 316 tTGt~~-----vI---~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 316 TTGNKD-----II---MVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CCCCcc-----ch---HHHHHhcCCCCCEEEEc
Confidence 321111 11 12223789999999843
No 449
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=42.98 E-value=1.7e+02 Score=32.73 Aligned_cols=91 Identities=18% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccc---ccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDI---DRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDL---esLPFEDESFDV 1499 (1662)
++.+||.+|+|. |..+..+|+. |+..|++++.++ ..+.+++ .+.. .++..+-... ...+ ...+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~--~~~vd~ 229 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDN--PYGFDV 229 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhc--CCCCcE
Confidence 678999998753 5555556665 665588888875 5555433 2322 2222221111 0011 356999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
|+..... ...+ ....+.|+++|+++.
T Consensus 230 v~~~~~~-----~~~~----~~~~~~l~~~G~~v~ 255 (334)
T cd08234 230 VIEATGV-----PKTL----EQAIEYARRGGTVLV 255 (334)
T ss_pred EEECCCC-----hHHH----HHHHHHHhcCCEEEE
Confidence 9973211 1122 223478899999874
No 450
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=42.66 E-value=60 Score=38.90 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCcHHHHHHHHh-------C-----C---------CEEEEEechH---HHHHHHHHHHhc----------
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAEA-------G-----A---------KHVISVDCSV---ITQLTQEVVEEN---------- 1471 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LARA-------G-----A---------KKVTGVDISp---MLEiARENAreN---------- 1471 (1662)
+..+||.||.|.|.-...+|.. . . -.|++||+.+ ++......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 3479999999998532222221 0 1 2799999984 666666555544
Q ss_pred CC----C--CcEEEEEccccccccCC-----CCCCceeEEEEcCchhhhChHH--HHHHHHHHHHhcccCCeEEEee
Q psy1769 1472 DC----S--DVITVICRRMEDIDRLP-----HGIENVDIIVSNWMGHVLYLDS--LINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1472 GL----e--DRVEFIqGDAEDLesLP-----FEDESFDVVISE~VgH~Ld~Ed--mLEaLLrALrRLLKPGGrLIPS 1535 (1662)
.+ . =++.|.+.|+..+. .+ +.....|+|..-+...-+..+. .-..+|..+...++||..|++.
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~-~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLS-EDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred ccccCCccceeeeEEecccccCC-hHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 01 1 24788888887754 11 0001234443322222221111 2234566777889999987644
No 451
>KOG1205|consensus
Probab=42.37 E-value=64 Score=37.96 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEech-HHHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDIS-pMLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-=||-+|+ ++..++++|++ ++-+-.. .-++...+.+++.+-..++.++.+|+.+.++.+ ..-
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~-l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAK-LVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCc-eEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 68899999999986 78888888885 3333333 334444333333222226999999998865211 123
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+..|++|.+.
T Consensus 90 g~vDvLVNNA 99 (282)
T KOG1205|consen 90 GRVDVLVNNA 99 (282)
T ss_pred CCCCEEEecC
Confidence 6899999854
No 452
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=42.20 E-value=69 Score=35.96 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcc---ccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRR---MEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGD---AEDLesLPFEDESFDV 1499 (1662)
++.+||-.|+|. |.++..+|+. |+..|++++.++ ..+.++ ..+.. .++..+ ..++..+. ....+|+
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~----~~g~~---~~~~~~~~~~~~~~~~~-~~~~~d~ 230 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAR----ELGAD---DTINPKEEDVEKVRELT-EGRGADL 230 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH----HcCCC---EEecCccccHHHHHHHh-CCCCCCE
Confidence 677889888765 5566666665 665588988774 444443 22321 122111 11111011 1235999
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|+...- ....+ ..+.+.|+++|+++..
T Consensus 231 vld~~g-----~~~~~----~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 231 VIEAAG-----SPATI----EQALALARPGGKVVLV 257 (343)
T ss_pred EEECCC-----CHHHH----HHHHHHhhcCCEEEEE
Confidence 987421 11122 2234788999998743
No 453
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=41.96 E-value=1.3e+02 Score=39.15 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCEEEEECCCC-c-HHHHHHH-HhCCCEEEEEechH-HHHHHHHHHHh-------cC-C--------CCcEEEEEcccc
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCA-EAGAKHVISVDCSV-ITQLTQEVVEE-------ND-C--------SDVITVICRRME 1485 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LA-RAGAKKVTGVDISp-MLEiARENAre-------NG-L--------eDRVEFIqGDAE 1485 (1662)
+-.+|.-||+|+ | .++..+| ..|. .|+.+|.++ .++.+++.+.. .+ + ..+|++. .|..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~ 385 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYR 385 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChH
Confidence 346799999998 3 4777777 6677 899999995 66666544322 11 1 1234333 2222
Q ss_pred ccccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeecCce
Q psy1769 1486 DIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAEL 1539 (1662)
Q Consensus 1486 DLesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsATL 1539 (1662)
. + ...|+||-..+.. -+....++..+.++++|+.+|.-...++
T Consensus 386 ~---~----~~aDlViEav~E~----~~~K~~v~~~le~~~~~~~ilasnTS~l 428 (708)
T PRK11154 386 G---F----KHADVVIEAVFED----LALKQQMVAEVEQNCAPHTIFASNTSSL 428 (708)
T ss_pred H---h----ccCCEEeeccccc----HHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence 2 1 3678888754433 3456677788888999998876554433
No 454
>PRK06125 short chain dehydrogenase; Provisional
Probab=41.83 E-value=1.2e+02 Score=32.93 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=47.8
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC---CCCCCcee
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL---PHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL---PFEDESFD 1498 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ .++.+.+.+.... ..++.++..|+.+...+ -...+.+|
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 57899999986653 4555666688 899999874 4444443333221 23578888888764311 00124689
Q ss_pred EEEEcC
Q psy1769 1499 IIVSNW 1504 (1662)
Q Consensus 1499 VVISE~ 1504 (1662)
+||.+.
T Consensus 84 ~lv~~a 89 (259)
T PRK06125 84 ILVNNA 89 (259)
T ss_pred EEEECC
Confidence 988854
No 455
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=41.82 E-value=86 Score=37.86 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=57.0
Q ss_pred CCCEEEEECCCCcH--HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGMGL--LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl--LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+++|.-||||+-. .++-+...|..-++|+-... .. +++...|+ .+.++.+.. ...|+|+.
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~----~kA~~dGf------~V~~v~ea~------k~ADvim~ 80 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSW----KKAKEDGF------KVYTVEEAA------KRADVVMI 80 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhH----HHHHhcCC------EeecHHHHh------hcCCEEEE
Confidence 78899999999944 45555566887777876553 33 33445564 234444432 46899887
Q ss_pred cCchhhhChHHHHHHHHH-HHHhcccCCeEEEeec
Q psy1769 1503 NWMGHVLYLDSLINAVVY-ARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLr-ALrRLLKPGGrLIPSs 1536 (1662)
|.++.....++. .+...|+.|..|.|.-
T Consensus 81 ------L~PDe~q~~vy~~~I~p~Lk~G~aL~FaH 109 (338)
T COG0059 81 ------LLPDEQQKEVYEKEIAPNLKEGAALGFAH 109 (338)
T ss_pred ------eCchhhHHHHHHHHhhhhhcCCceEEecc
Confidence 223333444444 7788999999887653
No 456
>PRK09186 flagellin modification protein A; Provisional
Probab=41.75 E-value=1.1e+02 Score=32.72 Aligned_cols=78 Identities=23% Similarity=0.191 Sum_probs=45.6
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+.+.+....-...+.++.+|+.+...+. ..-
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56789999986543 4555556677 799888774 44444333322111234677788887643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 82 ~~id~vi~~A 91 (256)
T PRK09186 82 GKIDGAVNCA 91 (256)
T ss_pred CCccEEEECC
Confidence 3489999754
No 457
>PRK08589 short chain dehydrogenase; Validated
Probab=41.72 E-value=1.2e+02 Score=33.61 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=47.4
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFEDE 1495 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++.++.+.+.+...+ .++.++.+|+.+...+ ...-+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 57889999987764 5666666777 7999988753333333333322 3578888888764311 00114
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|++|.+.
T Consensus 82 ~id~li~~A 90 (272)
T PRK08589 82 RVDVLFNNA 90 (272)
T ss_pred CcCEEEECC
Confidence 689998854
No 458
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=41.71 E-value=80 Score=35.97 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV 1459 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp 1459 (1662)
.+++||-+|+|- |. +...++..|+.+|+.++.+.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 578999999863 22 33334455877999999884
No 459
>PRK07035 short chain dehydrogenase; Provisional
Probab=41.56 E-value=1.2e+02 Score=32.62 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=47.7
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.+. -++...+.+...+ .++.++..|+.+...+. ..-
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 56789999988764 5666666787 899999874 4444444343322 34777888886643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+++|+||...
T Consensus 84 ~~id~li~~a 93 (252)
T PRK07035 84 GRLDILVNNA 93 (252)
T ss_pred CCCCEEEECC
Confidence 3689988744
No 460
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=41.54 E-value=55 Score=36.94 Aligned_cols=33 Identities=39% Similarity=0.428 Sum_probs=26.5
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-||||. |. ++..|++.|.++++.+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 567999999984 44 6777788899999988765
No 461
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=41.44 E-value=90 Score=38.99 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=58.7
Q ss_pred CCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHH-------hcCC---------CCcEEEEEccccc
Q psy1769 1426 KDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVE-------ENDC---------SDVITVICRRMED 1486 (1662)
Q Consensus 1426 pGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAr-------eNGL---------eDRVEFIqGDAED 1486 (1662)
+-.+|--||+|+ | .++..+++.|. .|+.+|.++ .++.+.+.++ ..|. ..++++ ..+..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~-~~~~~~ 81 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP-VTDLHA 81 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE-eCCHHH
Confidence 345789999996 4 47778888887 799999995 6665544322 1121 012332 223332
Q ss_pred cccCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1487 IDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1487 LesLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
+ ...|+||...... ......++..+..+++++.+|.-..
T Consensus 82 l-------~~aDlVIEav~E~----~~vK~~vf~~l~~~~~~~~IlasnT 120 (503)
T TIGR02279 82 L-------ADAGLVIEAIVEN----LEVKKALFAQLEELCPADTIIASNT 120 (503)
T ss_pred h-------CCCCEEEEcCcCc----HHHHHHHHHHHHhhCCCCeEEEECC
Confidence 2 2579998855432 2345556666767777777765333
No 462
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=41.42 E-value=1.6e+02 Score=36.84 Aligned_cols=95 Identities=16% Similarity=0.299 Sum_probs=57.8
Q ss_pred CEEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHHHHH-------hcCC---------CCcEEEEEccccccc
Q psy1769 1428 KIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQEVVE-------ENDC---------SDVITVICRRMEDID 1488 (1662)
Q Consensus 1428 KRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARENAr-------eNGL---------eDRVEFIqGDAEDLe 1488 (1662)
.+|--||+|+ | .++..++..|. .|+..|.++ .++.+.+.++ ..|. -.++.+. .+..++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EALADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHHh-
Confidence 5788899996 4 47788888887 799999995 6666544332 1121 0123332 233322
Q ss_pred cCCCCCCceeEEEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1489 sLPFEDESFDVVISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
...|+||...+.. ......++..+..+++++.+|.-.
T Consensus 85 ------~~aDlViEav~E~----~~vK~~vf~~l~~~~~~~ailasn 121 (507)
T PRK08268 85 ------ADCDLVVEAIVER----LDVKQALFAQLEAIVSPDCILATN 121 (507)
T ss_pred ------CCCCEEEEcCccc----HHHHHHHHHHHHhhCCCCcEEEEC
Confidence 2579998855433 334555666666777787776533
No 463
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=41.22 E-value=2.3e+02 Score=32.63 Aligned_cols=72 Identities=8% Similarity=0.104 Sum_probs=41.3
Q ss_pred CCCEEEEECCCCcHHHHHHHH----hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVV 1500 (1662)
.+++||-.|+ +|.++..+++ .|. +|++++.+. -.......+. . ..+++++.+|+.+...+...-..+|+|
T Consensus 9 ~~~~vLVtG~-~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGA-TGYIGSWLVKLLLQRGY-TVHATLRDPAKSLHLLSKWK--E-GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhhc--c-CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 5789999984 5666555555 466 788887663 2221111111 1 246889999987643111001357988
Q ss_pred EE
Q psy1769 1501 VS 1502 (1662)
Q Consensus 1501 IS 1502 (1662)
|-
T Consensus 84 ih 85 (353)
T PLN02896 84 FH 85 (353)
T ss_pred EE
Confidence 76
No 464
>PRK05876 short chain dehydrogenase; Provisional
Probab=41.11 E-value=1.1e+02 Score=34.19 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++.+|+.+...+. ...
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 57789999987654 5566666687 688888874 4444433344333 35788888987643110 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||.+.
T Consensus 82 g~id~li~nA 91 (275)
T PRK05876 82 GHVDVVFSNA 91 (275)
T ss_pred CCCCEEEECC
Confidence 3689998844
No 465
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=41.02 E-value=87 Score=38.74 Aligned_cols=86 Identities=22% Similarity=0.397 Sum_probs=48.7
Q ss_pred CCCCCEEEEECCC-CcH-HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1424 LLKDKIVLEVGCG-MGL-LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1424 dlpGKRVLDIGCG-TGl-LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
.+.+++||-||+| .|. .+..++..|...|+.+--. ++.|.+.+...+ ..++. +.++. ..-..+|+||
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~----~~~~~--l~el~---~~l~~~DvVi 243 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG----AEAVA--LEELL---EALAEADVVI 243 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC----Ceeec--HHHHH---HhhhhCCEEE
Confidence 3578899999999 565 4666777788788876555 345555444433 12221 22211 1124799999
Q ss_pred EcC-chhhhChHHHHHHHHH
Q psy1769 1502 SNW-MGHVLYLDSLINAVVY 1520 (1662)
Q Consensus 1502 SE~-VgH~Ld~EdmLEaLLr 1520 (1662)
+.. ..+.......++..+.
T Consensus 244 ssTsa~~~ii~~~~ve~a~~ 263 (414)
T COG0373 244 SSTSAPHPIITREMVERALK 263 (414)
T ss_pred EecCCCccccCHHHHHHHHh
Confidence 953 2233334444544443
No 466
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=40.99 E-value=2e+02 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.3
Q ss_pred EEEEECCCC-c-HHHHHHHHhCCCEEEEEechH-HHHHHHH
Q psy1769 1429 IVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSV-ITQLTQE 1466 (1662)
Q Consensus 1429 RVLDIGCGT-G-lLSL~LARAGAKKVTGVDISp-MLEiARE 1466 (1662)
+|.-||+|. | .++..+++.|. +|+++|.++ .++.++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPA 43 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHH
Confidence 688899885 4 46777777777 799999995 5555543
No 467
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=40.92 E-value=1.4e+02 Score=34.47 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=25.2
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV 1459 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp 1459 (1662)
.+++||-||||- |. +...+++.|+++|+.++.+.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 577899999985 33 34445566888999998874
No 468
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=40.91 E-value=75 Score=37.29 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=45.5
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH--H------------------HHHHHHHHHhcCCCCcEEEEEcc
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV--I------------------TQLTQEVVEENDCSDVITVICRR 1483 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp--M------------------LEiARENAreNGLeDRVEFIqGD 1483 (1662)
...+||-+|||. |. ++..|+.+|.++++.+|... . ++.+.+++++.+-.-+|+.....
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 467899999985 44 67777888999999988552 1 23344445443333345555554
Q ss_pred ccccccCCCCCCceeEEEEc
Q psy1769 1484 MEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1484 AEDLesLPFEDESFDVVISE 1503 (1662)
..... + ..||+||+.
T Consensus 98 ~~~~~-l----~~fdvVV~~ 112 (286)
T cd01491 98 LTTDE-L----LKFQVVVLT 112 (286)
T ss_pred CCHHH-H----hcCCEEEEe
Confidence 32211 1 479999884
No 469
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=40.83 E-value=83 Score=32.90 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=52.5
Q ss_pred EEEEECCCCcH--HHHHHHHhCCCEEEEEechH-HHHHHHHHHHh------cCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1429 IVLEVGCGMGL--LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE------NDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1429 RVLDIGCGTGl--LSL~LARAGAKKVTGVDISp-MLEiARENAre------NGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
+|.-||+|.+. ++..++..|. +|+....++ .++..++.-.. ..+..++. +..|+.+.. ...|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~-~t~dl~~a~------~~ad~ 72 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK-ATTDLEEAL------EDADI 72 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE-EESSHHHHH------TT-SE
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc-cccCHHHHh------CcccE
Confidence 36778888755 4555566664 788888885 44444432110 01123343 345554432 36799
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEeec
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSs 1536 (1662)
|+....... ++.++..+..+|+++-.++...
T Consensus 73 IiiavPs~~------~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 73 IIIAVPSQA------HREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp EEE-S-GGG------HHHHHHHHTTTSHTT-EEEETS
T ss_pred EEecccHHH------HHHHHHHHhhccCCCCEEEEec
Confidence 988655443 3556677788898888877544
No 470
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=40.71 E-value=1.1e+02 Score=33.09 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FEDE 1495 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.+.-++.+.+.+...+ .++.++.+|+.+...+. ...+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67899999987764 5566666777 6888776642333333333322 45888889988754110 0013
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|+||...
T Consensus 91 ~id~li~~a 99 (258)
T PRK06935 91 KIDILVNNA 99 (258)
T ss_pred CCCEEEECC
Confidence 689988743
No 471
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=40.70 E-value=89 Score=32.05 Aligned_cols=73 Identities=26% Similarity=0.325 Sum_probs=42.7
Q ss_pred CCCCCEEEEECCCC-c-HHHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEE
Q psy1769 1424 LLKDKIVLEVGCGM-G-LLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1424 dlpGKRVLDIGCGT-G-lLSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVI 1501 (1662)
...+++||-||+|- | .....++..|+++|+.+.-+. +.|++.+...+ ...+.++..+ ++... ...+|+||
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~~-~~~~~~~~~~--~~~~~---~~~~DivI 80 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEFG-GVNIEAIPLE--DLEEA---LQEADIVI 80 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHHT-GCSEEEEEGG--GHCHH---HHTESEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHcC-ccccceeeHH--HHHHH---HhhCCeEE
Confidence 34789999999985 3 345556666998999998874 22222222221 1235555433 32101 14799999
Q ss_pred EcC
Q psy1769 1502 SNW 1504 (1662)
Q Consensus 1502 SE~ 1504 (1662)
...
T Consensus 81 ~aT 83 (135)
T PF01488_consen 81 NAT 83 (135)
T ss_dssp E-S
T ss_pred Eec
Confidence 954
No 472
>KOG0022|consensus
Probab=40.54 E-value=46 Score=40.29 Aligned_cols=42 Identities=31% Similarity=0.357 Sum_probs=32.5
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEV 1467 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAREN 1467 (1662)
++..|.-+|+|. |+...+-+++ ||.+++|||+++ -.+.|++.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 678888888886 6666666665 899999999996 66666653
No 473
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=40.49 E-value=98 Score=32.91 Aligned_cols=73 Identities=22% Similarity=0.269 Sum_probs=42.4
Q ss_pred CEEEEECCCCcHHHH----HHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEcccccccc-------CCCCCC
Q psy1769 1428 KIVLEVGCGMGLLSL----FCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDR-------LPHGIE 1495 (1662)
Q Consensus 1428 KRVLDIGCGTGlLSL----~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLes-------LPFEDE 1495 (1662)
++||-.|++ |.++. .+++.|. +|++++.++ ..+.+...+...+ .++.++.+|+.+... +.....
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 467888854 44444 4444577 799999874 3333433333322 458888888876431 110123
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
..|+||...
T Consensus 78 ~~d~vi~~a 86 (255)
T TIGR01963 78 GLDILVNNA 86 (255)
T ss_pred CCCEEEECC
Confidence 589988744
No 474
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.47 E-value=1.2e+02 Score=32.13 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=46.5
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-+|+..|+ ++..+++.|+ +|++++.++ -++.+...+.. ..++.++.+|+.+...+. ...
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56789999876543 5555666677 699999885 33333333332 235888999887654210 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 80 ~~~d~vi~~a 89 (251)
T PRK07231 80 GSVDILVNNA 89 (251)
T ss_pred CCCCEEEECC
Confidence 3689998844
No 475
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=40.43 E-value=98 Score=38.06 Aligned_cols=85 Identities=21% Similarity=0.193 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechHH-HHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISpM-LEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+++|+-+|||. |.....+++. |+ +|+++|.++. ...|+ ..|+ .+. ++++. + ...|+||+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~----~~G~----~v~--~leea--l----~~aDVVIt 256 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAA----MDGF----RVM--TMEEA--A----KIGDIFIT 256 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHH----hcCC----EeC--CHHHH--H----hcCCEEEE
Confidence 789999999997 6554444443 66 7999999872 22222 2232 222 33332 2 35799887
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..- ....+. .....++|+|++|+..
T Consensus 257 aTG-----~~~vI~---~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 257 ATG-----NKDVIR---GEHFENMKDGAIVANI 281 (406)
T ss_pred CCC-----CHHHHH---HHHHhcCCCCcEEEEE
Confidence 321 122222 1234789999998844
No 476
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=40.40 E-value=1.2e+02 Score=32.82 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=47.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFEDE 1495 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++.+..+.+.+...+ ..+.++.+|+.+...+ ....+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 57889999987654 5666666777 7999998753333333333322 3577888888764311 00014
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|+||.+.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 689988854
No 477
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=40.05 E-value=59 Score=36.83 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=26.7
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEech
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCS 1458 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDIS 1458 (1662)
...+||-+|||. |. ++..|++.|..+++.+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467899999984 54 6778888899999999855
No 478
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=39.87 E-value=1.3e+02 Score=32.89 Aligned_cols=76 Identities=24% Similarity=0.264 Sum_probs=49.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++.+|+.+...+ ...-
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 67889999988764 5666677787 688888774 4444444444333 3588889998765311 0001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 86 ~~id~li~~a 95 (265)
T PRK07097 86 GVIDILVNNA 95 (265)
T ss_pred CCCCEEEECC
Confidence 4689998844
No 479
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=39.85 E-value=1.4e+02 Score=34.64 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=25.9
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV 1459 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp 1459 (1662)
.+++||-||||- |. .+..++..|+++|+.+|.+.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 567899999986 33 44555566888999999984
No 480
>PLN02427 UDP-apiose/xylose synthase
Probab=39.78 E-value=49 Score=38.41 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=42.4
Q ss_pred CCCCEEEEECCCCcHHHHHHHH----hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.+.++||-.| |+|.++..+++ .|..+|+++|.+. .+....... ...+..+++++.+|+.+...+...-..+|+
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPD-TVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccc-cccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 3667899887 56666555554 3324799999763 221111100 001224699999999764312111135798
Q ss_pred EEE
Q psy1769 1500 IVS 1502 (1662)
Q Consensus 1500 VIS 1502 (1662)
||-
T Consensus 90 ViH 92 (386)
T PLN02427 90 TIN 92 (386)
T ss_pred EEE
Confidence 876
No 481
>PRK09072 short chain dehydrogenase; Provisional
Probab=39.75 E-value=1.2e+02 Score=32.84 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP------HGIE 1495 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP------FEDE 1495 (1662)
++++||-.|++.|+ ++..+++.|+ +|++++.++ -++.+...+. ...++.++.+|+.+...+. ...+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 56789999977654 5566666787 799999884 4443333332 2346888889887753110 0014
Q ss_pred ceeEEEEcC
Q psy1769 1496 NVDIIVSNW 1504 (1662)
Q Consensus 1496 SFDVVISE~ 1504 (1662)
.+|+||...
T Consensus 80 ~id~lv~~a 88 (263)
T PRK09072 80 GINVLINNA 88 (263)
T ss_pred CCCEEEECC
Confidence 679988843
No 482
>PRK06194 hypothetical protein; Provisional
Probab=39.67 E-value=1.2e+02 Score=33.20 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=46.0
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCC-------CCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLP-------HGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLP-------FED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|+.+|.+. .++.+.+.+...+ .++.++.+|+.+...+. ...
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789988866543 4555566677 799999874 4443333333322 35888999987643111 001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 82 g~id~vi~~A 91 (287)
T PRK06194 82 GAVHLLFNNA 91 (287)
T ss_pred CCCCEEEECC
Confidence 3579998844
No 483
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=39.55 E-value=58 Score=38.93 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCCCEEEEECCCC-cHHHHHHHH-hCCCEEEEEechH
Q psy1769 1425 LKDKIVLEVGCGM-GLLSLFCAE-AGAKHVISVDCSV 1459 (1662)
Q Consensus 1425 lpGKRVLDIGCGT-GlLSL~LAR-AGAKKVTGVDISp 1459 (1662)
.++.+|+-||+|. |..+...++ .|+ +|+++|.++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~ 200 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINI 200 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCH
Confidence 3567899999984 555555444 377 799999985
No 484
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=39.36 E-value=91 Score=37.06 Aligned_cols=92 Identities=16% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCCEEEEECCCC--cH-HHHHHHHh----CCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCcee
Q psy1769 1426 KDKIVLEVGCGM--GL-LSLFCAEA----GAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVD 1498 (1662)
Q Consensus 1426 pGKRVLDIGCGT--Gl-LSL~LARA----GAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFD 1498 (1662)
..++||-+|+|+ |. -+-..++. ++ -++-.|+.+.+ . +.-..+.+|...+. .+ .++|
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~a-ilvDnDi~d~v-------S-----Da~~~~~~Dc~t~~-~~---~k~D 123 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDA-ILVDNDIRDYV-------S-----DADQSIVGDCRTYM-PP---DKFD 123 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS--B-------------SSSEEEES-GGGEE-ES---S-EE
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCc-EEEecchhhhc-------c-----ccCCceeccccccC-CC---Cccc
Confidence 578999999997 43 22233332 44 56666765521 1 22345778888775 44 8999
Q ss_pred EEEEcCch--------hhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMG--------HVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~Vg--------H~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+||+++-. .....+.+...+..-++.-|+=||.+++
T Consensus 124 lIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 124 LIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp EEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 99997641 1123355666666777788999998864
No 485
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=39.21 E-value=47 Score=40.30 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=45.3
Q ss_pred CCCCcEEEEEccccccccCCCCCCceeEEEE-cCchhhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1472 DCSDVITVICRRMEDIDRLPHGIENVDIIVS-NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1472 GLeDRVEFIqGDAEDLesLPFEDESFDVVIS-E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
++ ++|+++++++.++. -..+.+++|.++. +.+.++- . ..+..++.++.+.++|||+|+...+
T Consensus 273 ~~-drv~i~t~si~~~L-~~~~~~s~~~~vL~D~~Dwm~-~-~~~~~~~~~l~~~~~pgaRV~~Rsa 335 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVL-RRLPPGSFDRFVLSDHMDWMD-P-EQLNEEWQELARTARPGARVLWRSA 335 (380)
T ss_pred CC-CeEEEEeccHHHHH-HhCCCCCeeEEEecchhhhCC-H-HHHHHHHHHHHHHhCCCCEEEEeeC
Confidence 44 78999999998874 1122589998666 5555443 3 5667778899999999999996653
No 486
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=39.16 E-value=54 Score=39.91 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHH
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEV 1467 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiAREN 1467 (1662)
++..|.-+|||. |+.++.-|+. |+.+++|+|+++ -++.|++.
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 678899999986 7777777765 899999999996 67777654
No 487
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=39.10 E-value=2.8e+02 Score=28.00 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=49.2
Q ss_pred EEEECCCC-cH-HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEccc-------cccccCCCCCCceeEE
Q psy1769 1430 VLEVGCGM-GL-LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRM-------EDIDRLPHGIENVDII 1500 (1662)
Q Consensus 1430 VLDIGCGT-Gl-LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGDA-------EDLesLPFEDESFDVV 1500 (1662)
|+-+|+|. |. ++..|++.|. .|+.+.-.+-++. ++..+ +.+...+- ............+|+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~~~~~----~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 71 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSPRLEA----IKEQG----LTITGPDGDETVQPPIVISAPSADAGPYDLV 71 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHHHHHH----HHHHC----EEEEETTEEEEEEEEEEESSHGHHHSTESEE
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccccHHh----hhhee----EEEEecccceecccccccCcchhccCCCcEE
Confidence 56788886 44 5556666566 7999998872222 22333 22222220 0000000113689999
Q ss_pred EEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1501 VSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1501 ISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
|...=.+- +..++..+.+++.++..+++.
T Consensus 72 iv~vKa~~------~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 72 IVAVKAYQ------LEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp EE-SSGGG------HHHHHHHHCTGEETTEEEEEE
T ss_pred EEEecccc------hHHHHHHHhhccCCCcEEEEE
Confidence 88542222 234556678899999877743
No 488
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=39.09 E-value=1e+02 Score=34.79 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=48.1
Q ss_pred CCCEEEEECCCC-cHHHHHHHHh-CCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccc-cccCCCCCCceeEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAEA-GAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMED-IDRLPHGIENVDIIV 1501 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LARA-GAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAED-LesLPFEDESFDVVI 1501 (1662)
++.+||-.|||. |.++..+|+. |++.|++++.++ -.+.+++ .+...-+.....++.+ +..+. ....+|+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~-~~~~~d~vl 235 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT-DGEGVDVFL 235 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc-CCCCCCEEE
Confidence 567777777652 5555555664 665588887765 3333332 2331111111111111 10011 134689998
Q ss_pred EcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1502 SNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1502 SE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
..... ...+. ...+.|+++|+++..
T Consensus 236 d~~g~-----~~~~~----~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 236 EMSGA-----PKALE----QGLQAVTPGGRVSLL 260 (340)
T ss_pred ECCCC-----HHHHH----HHHHhhcCCCEEEEE
Confidence 74221 12222 234788999998743
No 489
>KOG2539|consensus
Probab=39.02 E-value=73 Score=40.10 Aligned_cols=108 Identities=12% Similarity=0.082 Sum_probs=57.9
Q ss_pred CCCCEEEEECCCCcH--HHHHHHHhC-CCEEEEEechH-HHHHHHHHHHhcCCC-CcEEEEEccccccccCCCC-CCcee
Q psy1769 1425 LKDKIVLEVGCGMGL--LSLFCAEAG-AKHVISVDCSV-ITQLTQEVVEENDCS-DVITVICRRMEDIDRLPHG-IENVD 1498 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl--LSL~LARAG-AKKVTGVDISp-MLEiARENAreNGLe-DRVEFIqGDAEDLesLPFE-DESFD 1498 (1662)
..+..++|+|.|.|. ++....-.+ ...++.||.+. |.......++. +-. ..+.+...-..+.. +|.. ...||
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~-~pi~~~~~yD 276 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQR-LPIDIKNGYD 276 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhccc-CCCCccccee
Confidence 355677888877654 333333323 56789999994 87777766653 111 01111110111111 3332 24599
Q ss_pred EEEEcCchhhh-ChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1499 IIVSNWMGHVL-YLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1499 VVISE~VgH~L-d~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
+||+....+.+ ..+.-+.....-+.+..++|+.++.
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 99996644443 2333333343445567889998763
No 490
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=38.78 E-value=2.1e+02 Score=33.76 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=54.3
Q ss_pred CCCEEEEECCCC-cH-HHHHHHHhCCCEEEEEechH-HH-HHHHHHHHhcCCC-CcEEEEE-ccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSV-IT-QLTQEVVEENDCS-DVITVIC-RRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISp-ML-EiARENAreNGLe-DRVEFIq-GDAEDLesLPFEDESFDV 1499 (1662)
+..+|.-||+|. |. ++..++..|...|+.+|+++ .+ ..+.......... ...++.. .|.+++ ...|+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-------~~aDi 77 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-------AGSDV 77 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-------CCCCE
Confidence 346899999997 43 44555555755699999995 32 1222222111111 1234443 555443 35799
Q ss_pred EEEcC-ch--------------hhhChHHHHHHHHHHHHhcccCCeEEEeecC
Q psy1769 1500 IVSNW-MG--------------HVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537 (1662)
Q Consensus 1500 VISE~-Vg--------------H~Ld~EdmLEaLLrALrRLLKPGGrLIPSsA 1537 (1662)
||... +. .+......+..+...+.+.. |.|.+|....
T Consensus 78 VI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sN 129 (321)
T PTZ00082 78 VIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITN 129 (321)
T ss_pred EEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecC
Confidence 88722 10 11112233455555554444 7887775543
No 491
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=38.55 E-value=1e+02 Score=35.84 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=28.4
Q ss_pred CCCEEEEECCCCcHHH--HHHHHhCCCEEEEEechH-HHHHHHHHH
Q psy1769 1426 KDKIVLEVGCGMGLLS--LFCAEAGAKHVISVDCSV-ITQLTQEVV 1468 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLS--L~LARAGAKKVTGVDISp-MLEiARENA 1468 (1662)
.+++||-||||--.-+ ..++..|+++|+.++.++ ..+.|++.+
T Consensus 123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la 168 (288)
T PRK12749 123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFA 168 (288)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHH
Confidence 5679999999853322 334556888999998873 234444443
No 492
>PRK14852 hypothetical protein; Provisional
Probab=38.36 E-value=74 Score=43.03 Aligned_cols=77 Identities=16% Similarity=0.104 Sum_probs=47.2
Q ss_pred CCCEEEEECCC-CcH-HHHHHHHhCCCEEEEEechH-----H---------------HHHHHHHHHhcCCCCcEEEEEcc
Q psy1769 1426 KDKIVLEVGCG-MGL-LSLFCAEAGAKHVISVDCSV-----I---------------TQLTQEVVEENDCSDVITVICRR 1483 (1662)
Q Consensus 1426 pGKRVLDIGCG-TGl-LSL~LARAGAKKVTGVDISp-----M---------------LEiARENAreNGLeDRVEFIqGD 1483 (1662)
...+||-|||| .|. ++..+++.|.++++.+|.+. + ++.+++.+.+-+-.-+|+.+...
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 67899999999 454 78889999999998887551 1 23344455443333346666544
Q ss_pred ccccccCCCCCCceeEEEEc
Q psy1769 1484 MEDIDRLPHGIENVDIIVSN 1503 (1662)
Q Consensus 1484 AEDLesLPFEDESFDVVISE 1503 (1662)
+..-. +..--..+|+||..
T Consensus 411 I~~en-~~~fl~~~DiVVDa 429 (989)
T PRK14852 411 VAAET-IDAFLKDVDLLVDG 429 (989)
T ss_pred CCHHH-HHHHhhCCCEEEEC
Confidence 42211 10001478999973
No 493
>PRK07831 short chain dehydrogenase; Provisional
Probab=38.33 E-value=1.5e+02 Score=32.21 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCCEEEEECC-CCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHh-cCCCCcEEEEEccccccccCC-------C
Q psy1769 1426 KDKIVLEVGC-GMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEE-NDCSDVITVICRRMEDIDRLP-------H 1492 (1662)
Q Consensus 1426 pGKRVLDIGC-GTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAre-NGLeDRVEFIqGDAEDLesLP-------F 1492 (1662)
.+++||-.|+ |.|+ ++..+++.|+ +|+.+|.++ -++.+.+.++. .+ ..++.++.+|+.+...+. .
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHHH
Confidence 5688999986 4443 5566666687 699988874 45444444433 12 135888889987643110 0
Q ss_pred CCCceeEEEEcC
Q psy1769 1493 GIENVDIIVSNW 1504 (1662)
Q Consensus 1493 EDESFDVVISE~ 1504 (1662)
..+.+|+||...
T Consensus 94 ~~g~id~li~~a 105 (262)
T PRK07831 94 RLGRLDVLVNNA 105 (262)
T ss_pred HcCCCCEEEECC
Confidence 014689988854
No 494
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.31 E-value=1.5e+02 Score=31.51 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=45.5
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-+|++.|+ ++..+++.|+ +|+.++.++ -++.+.+.+...+ .++.++..|+.+...+ ....
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57789999975443 3444555577 799999885 4444444444332 3578888887653211 0001
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||...
T Consensus 81 ~~id~vi~~a 90 (253)
T PRK08217 81 GQLNGLINNA 90 (253)
T ss_pred CCCCEEEECC
Confidence 3689998843
No 495
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=38.22 E-value=99 Score=34.66 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=47.3
Q ss_pred EEEEECCCC-cH-HHHHHHHhCCCEEEEEechHHHHHHHHHHHhcCCCCcEEEEEcc-------ccccccCCCCCCceeE
Q psy1769 1429 IVLEVGCGM-GL-LSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRR-------MEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1429 RVLDIGCGT-Gl-LSL~LARAGAKKVTGVDISpMLEiARENAreNGLeDRVEFIqGD-------AEDLesLPFEDESFDV 1499 (1662)
+|+-||+|. |. ++..+++.|. .|+.++..+.++..+ ..++. +.-..++ ..+..+. ...+|+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~~~~~~~---~~~~d~ 71 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVRPKRAKALR----ERGLV--IRSDHGDAVVPGPVITDPEEL---TGPFDL 71 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEecHHHHHHHH----hCCeE--EEeCCCeEEecceeecCHHHc---cCCCCE
Confidence 688899997 33 6667777765 688888733333322 22321 1110000 1111101 156898
Q ss_pred EEEcCchhhhChHHHHHHHHHHHHhcccCCeEEEee
Q psy1769 1500 IVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535 (1662)
Q Consensus 1500 VISE~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIPS 1535 (1662)
||...-.+. ++.++..+...+.++..+++.
T Consensus 72 vilavk~~~------~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 72 VILAVKAYQ------LDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred EEEEecccC------HHHHHHHHHhhcCCCCEEEEe
Confidence 877443222 334445555677777766643
No 496
>PRK06196 oxidoreductase; Provisional
Probab=38.21 E-value=1e+02 Score=34.94 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=43.6
Q ss_pred CCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCCC
Q psy1769 1426 KDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHGI 1494 (1662)
Q Consensus 1426 pGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFED 1494 (1662)
.+++||-.|++.|+ ++..+++.|+ +|++++.++ .++.+.+.+. .+.++.+|+.+...+ ....
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 56789999976543 4445555577 789888874 3333322221 267888888775311 0012
Q ss_pred CceeEEEEcC
Q psy1769 1495 ENVDIIVSNW 1504 (1662)
Q Consensus 1495 ESFDVVISE~ 1504 (1662)
+.+|+||.+.
T Consensus 98 ~~iD~li~nA 107 (315)
T PRK06196 98 RRIDILINNA 107 (315)
T ss_pred CCCCEEEECC
Confidence 4689998854
No 497
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=38.17 E-value=1.5e+02 Score=32.17 Aligned_cols=77 Identities=25% Similarity=0.214 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCcH---HHHHHHHhCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccC-------CCC
Q psy1769 1425 LKDKIVLEVGCGMGL---LSLFCAEAGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRL-------PHG 1493 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGl---LSL~LARAGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesL-------PFE 1493 (1662)
..+++||-.|+..|+ ++..+++.|+ +|+.++.+. -++.+.+.+...+ .++.++.+|+.+...+ ...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 367899999954432 3444444577 799998874 4454444444332 3578899998875321 000
Q ss_pred CCceeEEEEcC
Q psy1769 1494 IENVDIIVSNW 1504 (1662)
Q Consensus 1494 DESFDVVISE~ 1504 (1662)
.+.+|+||...
T Consensus 87 ~~~id~vi~~a 97 (259)
T PRK08213 87 FGHVDILVNNA 97 (259)
T ss_pred hCCCCEEEECC
Confidence 13689988853
No 498
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=37.37 E-value=1.1e+02 Score=37.89 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=48.4
Q ss_pred CCCEEEEECCCC-cHHHHHHHH-hCCCEEEEEechH-HHHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeEEEE
Q psy1769 1426 KDKIVLEVGCGM-GLLSLFCAE-AGAKHVISVDCSV-ITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502 (1662)
Q Consensus 1426 pGKRVLDIGCGT-GlLSL~LAR-AGAKKVTGVDISp-MLEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDVVIS 1502 (1662)
.+++|+-+|+|. |......++ .|+ +|+.+|.++ ....|. ..|. .+ .++.+.. ..+|+||.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~----~~G~----~v--~~l~eal------~~aDVVI~ 273 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAA----MDGF----RV--MTMEEAA------ELGDIFVT 273 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHH----hcCC----Ee--cCHHHHH------hCCCEEEE
Confidence 788999999996 544333333 477 899999986 222221 1232 22 2333331 36899988
Q ss_pred cCchhhhChHHHHHHHHHHHHhcccCCeEEEe
Q psy1769 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILP 1534 (1662)
Q Consensus 1503 E~VgH~Ld~EdmLEaLLrALrRLLKPGGrLIP 1534 (1662)
..- ....+. ......+|+|++++.
T Consensus 274 aTG-----~~~vI~---~~~~~~mK~GailiN 297 (425)
T PRK05476 274 ATG-----NKDVIT---AEHMEAMKDGAILAN 297 (425)
T ss_pred CCC-----CHHHHH---HHHHhcCCCCCEEEE
Confidence 431 112222 123478999999874
No 499
>PLN02214 cinnamoyl-CoA reductase
Probab=37.09 E-value=1.4e+02 Score=34.55 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=41.5
Q ss_pred CCCEEEEECCCCcHHHHHHHH----hCCCEEEEEechH-H-HHHHHHHHHhcCCCCcEEEEEccccccccCCCCCCceeE
Q psy1769 1426 KDKIVLEVGCGMGLLSLFCAE----AGAKHVISVDCSV-I-TQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDI 1499 (1662)
Q Consensus 1426 pGKRVLDIGCGTGlLSL~LAR----AGAKKVTGVDISp-M-LEiARENAreNGLeDRVEFIqGDAEDLesLPFEDESFDV 1499 (1662)
.+++||-.|+ +|.++..+++ .|. +|+++..+. . .......+. +...+++++.+|+.+...+...-..+|+
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERGY-TVKGTVRNPDDPKNTHLRELE--GGKERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCcC-EEEEEeCCchhhhHHHHHHhh--CCCCcEEEEecCcCChHHHHHHHhcCCE
Confidence 5678999886 5666655544 465 798887663 2 111111111 1123588899998764311100135788
Q ss_pred EEEc
Q psy1769 1500 IVSN 1503 (1662)
Q Consensus 1500 VISE 1503 (1662)
||..
T Consensus 85 Vih~ 88 (342)
T PLN02214 85 VFHT 88 (342)
T ss_pred EEEe
Confidence 8773
No 500
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=37.07 E-value=68 Score=39.00 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCEEEEECCCCcHHHHHHHHhCCCEEEEEechH
Q psy1769 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV 1459 (1662)
Q Consensus 1425 lpGKRVLDIGCGTGlLSL~LARAGAKKVTGVDISp 1459 (1662)
.++.+||-|. +.|..++.++..+.++|+|||+++
T Consensus 34 ~~~d~vl~It-SaG~N~L~yL~~~P~~I~aVDlNp 67 (380)
T PF11899_consen 34 GPDDRVLTIT-SAGCNALDYLLAGPKRIHAVDLNP 67 (380)
T ss_pred CCCCeEEEEc-cCCchHHHHHhcCCceEEEEeCCH
Confidence 3788999995 444444555555678999999996
Done!