RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1769
(1662 letters)
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 214 bits (546), Expect = 1e-61
Identities = 95/263 (36%), Positives = 152/263 (57%), Gaps = 14/263 (5%)
Query: 1371 DIDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIV 1430
+ +DMTS++ + D YA H+ KD+ + +S+ +N HLFK DK+V
Sbjct: 21 NAEDMTSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFK----------DKVV 70
Query: 1431 LEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRL 1490
L+VG G G+L +F A+AGA+ VI ++CS I+ ++V+ N V+T+I ++E+++
Sbjct: 71 LDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-- 128
Query: 1491 PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAND-TMA 1549
+E VDII+S WMG+ L+ +S++N V++ARD++L P GLI PDRA LY A D
Sbjct: 129 -LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYK 187
Query: 1550 ATKYSFWHDVYGFDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNL 1609
K +W +VYGFDM I+ V +++T++ LI +D+ T V+D +F
Sbjct: 188 DYKIHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTS 247
Query: 1610 EFAMVAKEGGFVNAFVLYFKVIL 1632
F + K +V+A V YF +
Sbjct: 248 PFCLQVKRNDYVHALVAYFNIEF 270
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 212 bits (542), Expect = 3e-61
Identities = 80/249 (32%), Positives = 131/249 (52%), Gaps = 14/249 (5%)
Query: 1385 YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFC 1444
Y H+ KDK + D I N H+FK DK+VL+VGCG G+LS+F
Sbjct: 33 YGHYGIHEEMLKDKIRTESYRDFIYQNPHIFK----------DKVVLDVGCGTGILSMFA 82
Query: 1445 AEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNW 1504
A+AGAK V+ VD S I +++ N D IT+I ++E++ +E VD+I+S W
Sbjct: 83 AKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHL---PVEKVDVIISEW 139
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAND-TMAATKYSFWHDVYGFD 1563
MG+ L +S++++V+YA++++L G + PD + VA +D A + +FW DVYGF
Sbjct: 140 MGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFK 199
Query: 1564 MEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNA 1623
M +++ + A + ++++ I ID +T S+ D F+ +F + A
Sbjct: 200 MSCMKKAVIPEAVVEVLDPKTLISEPCGIKHIDCHTTSISDLEFSSDFTLKITRTSMCTA 259
Query: 1624 FVLYFKVIL 1632
YF +
Sbjct: 260 IAGYFDIYF 268
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel,
mixed alpha-beta, hexamer; 2.90A {Saccharomyces
cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 207 bits (527), Expect = 2e-59
Identities = 91/251 (36%), Positives = 134/251 (53%), Gaps = 14/251 (5%)
Query: 1383 DVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSL 1442
D Y H+ +D + ++II N LFK DKIVL+VGCG G+LS+
Sbjct: 5 DSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFK----------DKIVLDVGCGTGILSM 54
Query: 1443 FCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502
F A+ GAKHVI VD S I ++ +E+VE N SD IT++ ++ED+ VDII+S
Sbjct: 55 FAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHL---PFPKVDIIIS 111
Query: 1503 NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT-MAATKYSFWHDVYG 1561
WMG+ L +S+++ V+YARD +L GLI PD+ ++ D+ K ++W DVYG
Sbjct: 112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171
Query: 1562 FDMEPIQRDLPNIAKFHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFV 1621
FD P + + V + V T S + DLNT + D +F F + AK +
Sbjct: 172 FDYSPFVPLVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKISDLAFKSNFKLTAKRQDMI 231
Query: 1622 NAFVLYFKVIL 1632
N V +F ++
Sbjct: 232 NGIVTWFDIVF 242
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET:
SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A
2v74_B* 2v7e_A
Length = 348
Score = 183 bits (465), Expect = 6e-51
Identities = 70/270 (25%), Positives = 124/270 (45%), Gaps = 25/270 (9%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+ +S + Y + Q +D G + +I+ N FK DKIVL+
Sbjct: 7 TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLD 56
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VGCG G+LS F A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP
Sbjct: 57 VGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP- 114
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTM---- 1548
E VDII+S MG++L+ + ++ + ++A+ ++LKP G + P +++ D
Sbjct: 115 --EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYME 171
Query: 1549 AATKYSFWH--DVYGFDMEPIQRDLPNIAKFHP----VPGDKVMTDSILIHSIDLNTCSV 1602
TK +FW+ +G D+ ++ + P +M S+ L
Sbjct: 172 QFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEG 231
Query: 1603 DDTSFNLEFAMVAKEGGFVNAFVLYFKVIL 1632
D + F G V+ +F V
Sbjct: 232 DLHRIEIPFKFHMLHSGLVHGLAFWFDVAF 261
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 176 bits (447), Expect = 3e-48
Identities = 64/299 (21%), Positives = 128/299 (42%), Gaps = 38/299 (12%)
Query: 1372 IDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVL 1431
+D + Y+ + + D+ + + +++ N H F+ K VL
Sbjct: 19 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFE----------GKTVL 68
Query: 1432 EVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLP 1491
+VG G G+L+++ A+AGA+ V +V+ + + + +V+ N+ ++ VI +EDI
Sbjct: 69 DVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISL-- 126
Query: 1492 HGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA-- 1549
E VD+I+S WMG+ L +S+ ++V+ ARDR+LKP G++ P A ++ +A
Sbjct: 127 --PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADR 184
Query: 1550 -----ATKYSFWHDV-------YGFDMEPIQRDLPNIAKFHP--------VPGDKVMTDS 1589
+ WH+ YG DM + + + + + +++
Sbjct: 185 KRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTP 244
Query: 1590 ILIHSIDLNTCSVDDTSFNLEF--AMVAKEGGFVNAFVLYFKVILKLILRVEPHKFQVL 1646
++ +D T SV + +++ E + F +F V + L
Sbjct: 245 TIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIEL 303
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 175 bits (444), Expect = 7e-47
Identities = 68/270 (25%), Positives = 128/270 (47%), Gaps = 25/270 (9%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLE 1432
+ +S + Y + Q +D G + +I+ N FK DKIVL+
Sbjct: 115 TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFK----------DKIVLD 164
Query: 1433 VGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
VGCG G+LS F A+AGA+ + +V+ S + Q + +V+ N+ +D I VI ++E++ LP
Sbjct: 165 VGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP- 222
Query: 1493 GIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTM---- 1548
E VDII+S MG++L+ + ++ + ++A+ ++LKP G + P +++ D
Sbjct: 223 --EQVDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYME 279
Query: 1549 AATKYSFWH--DVYGFDMEPIQRDLPNIAKFHPVPGD---KVMTDSILIHSIDLNTCSVD 1603
TK +FW+ +G D+ ++ + PV +++ + ++++
Sbjct: 280 QFTKANFWYQPSFHGVDLSALRGAAVDEYFRQPVVDTFDIRILMAKSVKYTVNFLEAKEG 339
Query: 1604 D-TSFNLEFAMVAKEGGFVNAFVLYFKVIL 1632
D + F G V+ +F V
Sbjct: 340 DLHRIEIPFKFHMLHSGLVHGLAFWFDVAF 369
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM binding;
HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Length = 745
Score = 106 bits (265), Expect = 2e-23
Identities = 33/282 (11%), Positives = 74/282 (26%), Gaps = 45/282 (15%)
Query: 1390 THQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGA 1449
+ T +D+ + ++++ ++ + K ++ +G G G + ++
Sbjct: 378 VYNTFEQDQIKYDVYGEAVVGA-----LKDLGADGRKTVVIYLLGGGRGPIGTKILKSER 432
Query: 1450 KHVISVDCSVI--------------TQLTQEVVEENDCSDVITVICRRMEDIDR--LPHG 1493
++ + +T + + +T+I M + G
Sbjct: 433 EYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRG 492
Query: 1494 IENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATKY 1553
E DIIVS +G + L + FLKP + +P + Y T
Sbjct: 493 FEQPDIIVSELLGS-FGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTI 551
Query: 1554 SFWHDVYGFDMEPIQRDLPNIAKFHPV-----------------------PGDKVMTDSI 1590
Y P + + +
Sbjct: 552 KAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTK 611
Query: 1591 LIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNAFVLYFKVIL 1632
+ + + + V + F YF + L
Sbjct: 612 PVFTFEHPNFMNSSNERSDSIEFVMDRNADLMGFAGYFDLQL 653
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 91.5 bits (227), Expect = 4e-20
Identities = 37/202 (18%), Positives = 75/202 (37%), Gaps = 26/202 (12%)
Query: 1370 MDIDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKI 1429
M ++ T + ++ D ++ ++Q G ++ S + +L + +
Sbjct: 1 MSNENKTIHDFELNLICDFFSNM----ERQGPGSPEVTLKALSFI-------DNLTEKSL 49
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITVICRRMEDI 1487
+ ++GCG G ++ A V +D I ++ + +T I M+D
Sbjct: 50 IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIF-NRNARQSGLQNRVTGIVGSMDD- 107
Query: 1488 DRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT 1547
LP E +D+I S + + + +N ++LK G + C D
Sbjct: 108 --LPFRNEELDLIWSEGAIYNIGFERGLNEW----RKYLKKGGYLAVSE----CSWFTDE 157
Query: 1548 MAATKYSFWHDVYGFDMEPIQR 1569
A FW D Y +++ I
Sbjct: 158 RPAEINDFWMDAYP-EIDTIPN 178
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural
genomics, PSI-2, protein structure initiative; 2.35A
{Listeria monocytogenes str}
Length = 253
Score = 78.8 bits (194), Expect = 5e-16
Identities = 34/161 (21%), Positives = 61/161 (37%), Gaps = 17/161 (10%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRM 1484
K VL++GCG G ++ AE GAK V+ +D S L + S V+ + +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE-RML--TEAKRKTTSPVVCYEQKAI 99
Query: 1485 EDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHG-LILPDRAELYCVA 1543
ED + + ++++S+ H Y+ S + + LK G I ++
Sbjct: 100 ED---IAIEPDAYNVVLSSLALH--YIASF-DDICKKVYINLKSSGSFIFSVEHPVFTAD 153
Query: 1544 ANDTM----AATKYSFWHDVYGFDMEPIQRDLP--NIAKFH 1578
K + D Y F+ ++ K+H
Sbjct: 154 GRQDWYTDETGNKLHWPVDRY-FNESMRTSHFLGEDVQKYH 193
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 69.8 bits (171), Expect = 4e-13
Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 19/147 (12%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRM 1484
+ ++++GCG G + E GA +V+ +D S L IT
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE-KML--ARARAAGPDTGITYERA-- 96
Query: 1485 EDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAV--VYARDRFLKPHGLILPDRAELYCV 1542
D+D+L ++ D+ S+ H Y++ + V+ + L P G ++
Sbjct: 97 -DLDKLHLPQDSFDLAYSSLALH--YVEDVARLFRTVH---QALSPGGHF------VFST 144
Query: 1543 AANDTMAATKYSFWHDVYGFDMEPIQR 1569
MA + + D G PI R
Sbjct: 145 EHPIYMAPARPGWAIDAEGRRTWPIDR 171
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 68.3 bits (167), Expect = 2e-12
Identities = 32/158 (20%), Positives = 61/158 (38%), Gaps = 17/158 (10%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITV 1479
+ L D + ++GCG G +LF A+ + +D I + V+ N C+D +
Sbjct: 42 NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKAN-CADRVKG 100
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHG-LILPDRAE 1538
I +D LP E +D+I S + + + + ++LK G + + +
Sbjct: 101 IT---GSMDNLPFQNEELDLIWSEGAIYNIGFE---RGMNEWS-KYLKKGGFIAVSE--- 150
Query: 1539 LYCVAANDTMAATKYSFWHDVYGFDMEPIQRDLPNIAK 1576
A FW D Y ++ I + + +
Sbjct: 151 --ASWFTSERPAEIEDFWMDAYP-EISVIPTCIDKMER 185
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 61.8 bits (150), Expect = 2e-10
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 11/115 (9%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCS-VITQLTQEVVEENDCSDVITV 1479
S + + I+L+VG L + E G K I+ + Q + VE + + I V
Sbjct: 11 SFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQV 70
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHG-LIL 1533
+ + V +I MG LI ++ L LIL
Sbjct: 71 RL---ANGLAAFEETDQVSVITIAGMGG-----RLIARILEEGLGKLANVERLIL 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 3e-10
Identities = 114/696 (16%), Positives = 189/696 (27%), Gaps = 252/696 (36%)
Query: 151 GASSR--NMSRGSGKHP---PSNNNY-----KADFEVNEDSTQQHNKKHKRESSK----- 195
S+R +S GS +H P+ + + + F + ++
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 196 -----VISVTNNQQVNND--------KDFKNNLMWDGD--SAGAKKSRNQWKNLDVNN-- 238
V S+ +V +F+N + D + AK + L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 239 ITNKTRER-LMNKPAS--SNDSLLKDNGDVDSRT--------TTASILD--SSLYQNTYD 285
I N R + +P SN +L + G+ +++ T + LY TY
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY-QTYH 181
Query: 286 SKTRNFVDSGSQIFNAASTLNETPEHSTRDGKLFSN-----EALYAPSSTTNYPYSSS-- 338
+ + +A TL+E + K+F+ E L PS+T + Y S
Sbjct: 182 VLVGDLIKF------SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 339 -STP--------TYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSSISNTI 389
S P Y V + G G + S AT H ++
Sbjct: 236 ISCPLIGVIQLAHYV-----------VTAKLLGFTPGELRS--YLKGATGHSQGLVT--- 279
Query: 390 TNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLYQQQ 449
+V + +S+ SF +++ G
Sbjct: 280 ------------AVAIAETDSWESFFVSV----------RKAITVLFFIGVRCYE----- 312
Query: 450 PSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKNHLDSKSTLETKSSSEHP 509
YP TS+ PP ++ DS E
Sbjct: 313 -----------AYPNTSL----------------PPSILE-----DSLENNEGV------ 334
Query: 510 PYVDYPNYM----GTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQPG 565
P+ M Q+ + V H ++I+ + N G
Sbjct: 335 -----PSPMLSISNLT-QEQVQDYVNKTN---SHLPAGKQVEIS--------LVN----G 373
Query: 566 P-------PPQSTSDYKMLYWNNVPMPNMLHAPPP----QAPHSAMYKYTSHIPYDMPTS 614
PPQS LY N+ + AP + P S K + +P +
Sbjct: 374 AKNLVVSGPPQS------LYGLNLTLRK-AKAPSGLDQSRIPFSER-KLKFSNRF-LPVA 424
Query: 615 QATQKPFMKLNDSTSGTDTSAYISPTHMRVHTH------QIPAH--RYPVENTTTNKMPL 666
+ PF S + P ++ A + PV +T
Sbjct: 425 -S---PFH-----------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 667 AYTEPQPPNL-----------QASLNDYQRYQNERHHFTDFGNFQTPPLGNSVQHNYQTN 715
+ + + + Q + H DFG P G S
Sbjct: 470 VLSGSISERIVDCIIRLPVKWETTT------QFKATHILDFG-----PGGAS-------- 510
Query: 716 DSFGTNDLSTRIHQQPTAVHPYFNST-DENSAQRYG 750
G L+ R + T V T D N YG
Sbjct: 511 ---GLGVLTHRN-KDGTGVRVIVAGTLDINPDDDYG 542
Score = 43.9 bits (103), Expect = 6e-04
Identities = 70/551 (12%), Positives = 140/551 (25%), Gaps = 204/551 (37%)
Query: 369 YSTNSFMAATTHGYSSISNTI---TNTQPSQQQSNNSVYSSTINSYSSFPQQ----SSVN 421
YST +HG S+ + + T + Q F +
Sbjct: 4 YSTRPL--TLSHG--SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 422 LNTY--GHQASSLSNSNTTGYSS--QNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTS 477
L G+ +S + S + + + Y + ++ A + T+
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC--YLEGNDIH--ALAAKLLQENDTT 115
Query: 478 HTSHKYPPYNVDMKNHLDSKSTLETKSSSEHPPYVDYPNYMGTQYQDSLMKDVKT-AADP 536
K +KN++ ++ + + +L + V A
Sbjct: 116 LVKTKEL-----IKNYITARIMAKRPFDKKSNS--------------ALFRAVGEGNAQL 156
Query: 537 IGHF-----------EFRNTLDI-APMI-PMDSYMTNYMQPGPPPQSTSDYKMLYWNNVP 583
+ F E R+ ++ + + + ++T D + ++ +
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSE--LIRTTLDAEKVFTQGLN 214
Query: 584 MPNMLHAP---PPQAPHSAMYKYTSHIPYDMPTSQATQ-------------KPFMKLNDS 627
+ L P P + Y IP P Q P +L
Sbjct: 215 ILEWLENPSNTPDKD-------YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSY 266
Query: 628 TSGTD-------TSAYISPT------------------HMRVHTHQIPAHRYPVENTTTN 662
G T+ I+ T + V ++ YP + +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE----AYPNTSLPPS 322
Query: 663 KM--PLAYTEPQP-PNLQASLNDYQRYQNERHHFTDFGNFQTPPLGNSVQHNYQTNDSFG 719
+ L E P P L S+++ + Q + + V +TN
Sbjct: 323 ILEDSLENNEGVPSPML--SISNLTQEQVQDY----------------VN---KTNSHLP 361
Query: 720 TNDLSTRIHQQPTAVHPYFNSTDENSAQRYGIPDVSVHSSRNKRAITGGTNHLQHLN--- 776
++ +S+ + ++G L LN
Sbjct: 362 AGK---QVE-------------------------ISLVNGAKNLVVSGPPQSLYGLNLTL 393
Query: 777 -----------SRTPHYQ----------------HNSGY-------------SRHLSYED 796
SR P + H S ++S+
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNNVSFNA 452
Query: 797 KDLAKPPVPHT 807
KD+ + PV T
Sbjct: 453 KDI-QIPVYDT 462
Score = 40.8 bits (95), Expect = 0.005
Identities = 83/539 (15%), Positives = 143/539 (26%), Gaps = 196/539 (36%)
Query: 494 LDSKS----TLETKSSSEHP---PYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTL 546
+D+ S TL + S EH P + +Q Q+ K + + F
Sbjct: 1 MDAYSTRPLTL-SHGSLEHVLLVPTASFFIA--SQLQEQFNKILPEPTE-----GF--AA 50
Query: 547 DIAPMIPMD------SYMTNYMQPGPPPQST-----------SDYKMLYWNNVPMPNMLH 589
D P P + Y+++ ++P Q + Y L N++
Sbjct: 51 DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGNDI------- 101
Query: 590 APPPQAPHSAMYKYTSHIPYDMPTSQATQKPFMKLNDSTSGTDTSAYISPTHMRVHTHQI 649
H+ + + + T+ K +K YI+
Sbjct: 102 -------HAL----AAKLLQENDTTLVKTKELIK-----------NYIT----------- 128
Query: 650 PAHRYPVENTTTNKMPLAYTEPQPPNLQASLNDYQRYQNERHHFTDFGNFQTPPLGNSVQ 709
A + + + L ++ + FG Q GN
Sbjct: 129 -A------RIMAKR---PFDKKSNSALFRAVGE-----GNAQLVAIFGG-Q----GN--- 165
Query: 710 HNYQTNDSFGTNDLSTRIHQQPTAVHPYFNSTDENSAQRYGIPDVSVHSSRNKRAITGGT 769
T+D F +L V + SA+ + ++ + ++ T G
Sbjct: 166 ----TDDYF--EELRDLYQTYHVLVGDLI----KFSAET--LSELIRTTLDAEKVFTQGL 213
Query: 770 NHLQHLNSRTPHYQHNSGYSRHLSYEDKDLAKPPVPHTS---------GNIYVNHNKYEP 820
N L+ L P + Y L P+ S + V
Sbjct: 214 NILEWL--ENPSNTPDKDY----------LLSIPI---SCPLIGVIQLAHYVVTAKLLG- 257
Query: 821 QYIPPTVLPSSEKSRKPISHVSPPVVTSIITSTATS------------------------ 856
P L S K + S +VT++ + S
Sbjct: 258 --FTPGELRSYLKG---ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Query: 857 --NVTTTTSSSETKPAESDNKLPS-------------------NNNPSEEGEDVS----- 890
T+ S E++ +PS N+ G+ V
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 891 GRKNAKVVPGSPAKSNNMSQHYNEKGHKSGGERQRDRGDTGRHHQFQNN--MIKTIDFH 947
G KN VV G P ++ K G Q + R +F N + FH
Sbjct: 373 GAKNL-VVSGPPQSLYGLNLTL-RKAKAPSGLDQSRIPFSERKLKFSNRFLPV-ASPFH 428
Score = 39.3 bits (91), Expect = 0.016
Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 84/188 (44%)
Query: 1505 MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATKYSFWHDVYGFDM 1564
MG LY S A+D + +RA+ + + D YGF +
Sbjct: 1631 MGMDLYKTS-----KAAQDVW---------NRADNH---------------FKDTYGFSI 1661
Query: 1565 EPIQRDLPNIAKFHP------------------VPGDKVMTDSILIHSIDLNTCSV---- 1602
I + P H D + + I+ ++ S
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 1603 -----DDTSFN------LEFAMVA--KEGGFVN---AF----------------VLYFKV 1630
T F +E A K G + F V+ +
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES 1781
Query: 1631 ILKLI-LR 1637
+++++ R
Sbjct: 1782 LVEVVFYR 1789
Score = 36.2 bits (83), Expect = 0.13
Identities = 35/232 (15%), Positives = 64/232 (27%), Gaps = 91/232 (39%)
Query: 56 M-QEL-----IVKSLCSIAFKEAGRSQAGVEKLSISKKKKLKFVKVDPKELNIVIDDGRG 109
M +L + + + A SI L V +P L I +G
Sbjct: 1631 MGMDLYKTSKAAQDV----WNRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEKG 1681
Query: 110 RDT-------DFRNNKPNHVKSQ-------ESRKSSSHHQDKGLGSSTR----------- 144
+ F +K++ E S + +KGL S+T+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 145 --------------------HS---NTAGGASSRNMS----------RGS--------GK 163
HS A + + MS RG +
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 164 HPPSN------NNYKADFEVNEDSTQQHNKKHKRESSKVISVTN----NQQV 205
SN N + ++++ Q ++ + + ++ + N NQQ
Sbjct: 1802 LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY 1853
Score = 35.4 bits (81), Expect = 0.20
Identities = 33/173 (19%), Positives = 49/173 (28%), Gaps = 60/173 (34%)
Query: 1169 HRYYDFDFIDPRSCFFPGSGTPYPQYGGGGP-PMFN--NLYNSNNYNNNKSKQKKTDSTN 1225
+ Y P + P + G P PM + NL + Q + TN
Sbjct: 311 YEAY------PNTSLPPSILEDSLENNEGVPSPMLSISNL-------TQEQVQDYVNKTN 357
Query: 1226 NV--DKKQDSTS---------------------TDERKKKATQKQQQSEEESKKTSNKKI 1262
+ KQ S RK KA QS S +K+
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSERKL 414
Query: 1263 KFKG-------P---EILNETTEPTASSATNSNVT--------TVSNTADNSN 1297
KF P +L ++ +NV+ V +T D S+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Score = 33.9 bits (77), Expect = 0.56
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 17/61 (27%)
Query: 47 QECCLSIARMQELIVKSLCSIA-FKEAGRSQ---AG----VEK----LSISKKKKLKFVK 94
Q + + L I + Q AG ++ L+ K +K+ ++
Sbjct: 1827 QYVVERVGKRT----GWLVEIVNYNVEN-QQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 95 V 95
+
Sbjct: 1882 L 1882
Score = 32.3 bits (73), Expect = 2.0
Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 38/160 (23%)
Query: 1053 KEE-DKIEKEENNTNAKENDEKS-----------TDDEKNKLDDKAKDTATKLS-NSADS 1099
+E+ +KI E A +++ + D L ++
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 1100 IKLNKKD--------EGSKENKPQQQRRKFNNFHNSSKYQRHPYHNNGGD--FNYVPVYD 1149
L D + + + N+ + + P+ F V +
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG--E 151
Query: 1150 GNINKFNKFGGGGNNR---------YPNHRYYDF--DFID 1178
GN FGG GN Y Y+ D I
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLY--QTYHVLVGDLIK 189
Score = 31.9 bits (72), Expect = 2.6
Identities = 30/156 (19%), Positives = 49/156 (31%), Gaps = 50/156 (32%)
Query: 1039 QQNIQILSPAKKPNKEEDKIEKEENN-------TNAKENDEKSTDDEKNKLDDKAKDTAT 1091
+ S P+ ED +E E +N + + ++ N K
Sbjct: 311 YEAYPNTSLP--PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 1092 KLSNSADSI----------KLN------KKDEGSKENK-PQQQRR-KFNN--------FH 1125
L N A ++ LN K G +++ P +R+ KF+N FH
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 1126 NSSKY------------QRHPYHNNGGDFNYVPVYD 1149
S ++ N D +PVYD
Sbjct: 429 --SHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYD 461
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 62.4 bits (151), Expect = 3e-10
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAK--HVISVDCS-VITQLTQEVVEENDCSDVIT 1478
HL +V V CG L + ++ +D + + + IT
Sbjct: 114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQIT 173
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535
+ + D +L E D++ SN + D+ + + + LKP G ++
Sbjct: 174 LHRQ---DAWKLDTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTS 226
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics,
PSI-2, protein structure initiative; 1.50A {Listeria
monocytogenes str}
Length = 244
Score = 60.7 bits (147), Expect = 6e-10
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCS-VITQLTQEVVEENDCSDVITV 1479
S++ K++ + ++G L F + A I+ + Q Q+ V + ++ I V
Sbjct: 17 SYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDV 76
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
R + + + +D IV MG L L + LIL
Sbjct: 77 ---RKGNGLAVIEKKDAIDTIVIAGMGGTLIRTILEE----GAAKLAGVTKLIL 123
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 61.6 bits (149), Expect = 2e-09
Identities = 51/205 (24%), Positives = 72/205 (35%), Gaps = 11/205 (5%)
Query: 326 APSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYS---TNSFMAATTHGY 382
S P +++ +P + + G S GV S T+ F +A + GY
Sbjct: 1492 VDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGY 1551
Query: 383 SSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTY-----GHQASSLSNSNT 437
S + + + P S Y + SYS S +Y + +S S S T
Sbjct: 1552 GLTSPSYSPSSPGYSTS--PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSAT 1609
Query: 438 TGYSSQNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKNHLDSK 497
+ S P+S SYS S Y TS + S S S TS Y P + S
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669
Query: 498 STLETKSSSEHPPYVDY-PNYMGTQ 521
S S P Y P+Y T
Sbjct: 1670 SPTSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 51.2 bits (122), Expect = 3e-06
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 319 FSNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAAT 378
+S Y PSS + P S S +PT + + S + + ++ S YS S
Sbjct: 1565 YSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSATSPSYSPTS----- 1617
Query: 379 THGYSSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTT 438
YS S + + T PS ++ S YS T SYS S +Y + S S ++ +
Sbjct: 1618 -PSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1675
Query: 439 GYSSQNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPP 485
+ Y P+S SYS S Y TS + S S S TS Y P
Sbjct: 1676 YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 42.8 bits (100), Expect = 0.001
Identities = 65/295 (22%), Positives = 89/295 (30%), Gaps = 40/295 (13%)
Query: 323 ALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGY 382
+ + T Y S + A+ + V G G Y +
Sbjct: 1476 SQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQ 1535
Query: 383 SSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSS 442
S + ++ S Y T SYS S + + SS S S T S
Sbjct: 1536 SPGYTSPFSSAMS------PGYGLTSPSYSP---SSPGYSTSPAYMPSSPSYSPT----S 1582
Query: 443 QNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKNHLDSKSTLET 502
+ P+S SYS S Y TS + S+ S S TS Y P + S S
Sbjct: 1583 PSY---SPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTS-------PSYSPTSP 1632
Query: 503 KSSSEHPPY-VDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNY 561
S P Y P+Y T S + P +P P S +
Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP----------SYSPTSPSYSPTSPS 1682
Query: 562 MQPGPPPQSTSDYKMLYWNNVPMPNMLHAPPPQAPHSAMYKYTSHIPYDMPTSQA 616
P P S + P+ P +P S Y TS P PTS +
Sbjct: 1683 YSPTSPSYSPTSPSYSP----TSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPS 1731
Score = 39.7 bits (92), Expect = 0.012
Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 15/167 (8%)
Query: 325 YAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSS 384
Y+P+S + P S S +PT + + S + + S + T+ + T+ YS
Sbjct: 1585 YSPTSPSYSPTSPSYSPTSPSYSATSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Query: 385 ISNTITNTQPSQQQSNNSV------YSSTINSYSSFPQQSSVNLNTYG-----HQASSLS 433
S + + T PS ++ S YS T SYS S +Y + +S S
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1703
Query: 434 NSNTTGYSSQNLYQQQPSSVSYSSNSYVYPQTSIA---TSSNVSSTS 477
S T+ S P+S SYS S Y TS + TS + S TS
Sbjct: 1704 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1750
Score = 30.0 bits (67), Expect = 9.9
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 9/106 (8%)
Query: 309 PEHSTRDGKLFSNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGV 368
P +S Y+P+S + P S S +PT + + S + ++ S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPS 1710
Query: 369 YSTNSFMAATTHGYSSISNTITNTQPSQQQSNNSVYSSTINSYSSF 414
YS T+ YS S + + T PS ++ S YS T SYS
Sbjct: 1711 YS------PTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1749
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 3e-09
Identities = 93/688 (13%), Positives = 188/688 (27%), Gaps = 247/688 (35%)
Query: 168 NNNYKADFEVNEDSTQQHNKKHKRESSKVISVTNNQQVNNDKDFKNNLMWDGDSAGAKKS 227
++++ DFE E Q+ K ++SV + F
Sbjct: 2 HHHHHMDFETGE---HQYQYK------DILSV-------FEDAFV--------------- 30
Query: 228 RNQWKNLDVNNITNKTRERLMNKPASSNDSLLKDNGDVDSRTTTASILDSSLYQNTYDSK 287
N D ++ + + L + D ++ D S T + + L +
Sbjct: 31 ----DNFDCKDVQDMPKSILSKEEI---DHIIMS-KDAVSGTLR--LFWTLLSKQE--EM 78
Query: 288 TRNFVDSGSQ-----IFNAASTLNETPEH------STRDGKLFSNEALYAPSSTTNYPYS 336
+ FV+ + + + T P RD +L+++ ++A Y+
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFA-------KYN 130
Query: 337 SSSTPTYAAMTTASGN---ANNVASNG-GGSNNGGVYSTNSFMAATTHGYSSISNTITNT 392
S Y + A A NV +G GS G + ++ + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----------------GKTWVALDVCLS 173
Query: 393 QPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLYQQ-QPS 451
Q + + ++ + + +S P+ L Q L Q P+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNS-PETVLEML--------------------QKLLYQIDPN 212
Query: 452 SVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKNHLDSKSTLETKSSSEHPPY 511
S S +S ++ L + L++K
Sbjct: 213 WTSRSDHSSNIKLRI---------------------HSIQAEL--RRLLKSK-------- 241
Query: 512 VDYPNYMGTQYQDSL--MKDVKTAADPIGHFEFR-NTLDIAPMIPMDSYMTNYMQPGPPP 568
Y++ L + +V+ A F L + +T+++
Sbjct: 242 ---------PYENCLLVLLNVQNAKA-WNAFNLSCKIL----LTTRFKQVTDFLS----A 283
Query: 569 QSTSDYKMLYWNNVPMPNMLHAPPPQAPHSAMYKYTSHIPYDMPTSQATQKPFMKLNDST 628
+T+ + L P + S + KY P D+P +
Sbjct: 284 ATTTHISL-----DHHSMTLT--PDEV-KSLLLKYLDCRPQDLP-REVLT---------- 324
Query: 629 SGTDTSAYISPTHMRV---HTHQIPAHRYPVENTTTNKMPLAYTEPQPPNLQASLNDYQR 685
+P + + A ++ +K+ +++SLN
Sbjct: 325 --------TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--------IESSLN-VLE 367
Query: 686 YQNERHHFTDFGNFQTPPLGNSVQHNYQTNDSFGTNDLSTRIHQQPTAVHP--YFNSTDE 743
R F F PP S I PT + +F+
Sbjct: 368 PAEYRKMFDRLSVF--PP--------------------SAHI---PTILLSLIWFDVIKS 402
Query: 744 NSAQRYGIPDVSVHSSRNKRAITGGTN------HLQHLNSRTP----HYQHNS---GYSR 790
+ V V+ + +L + + H S Y+
Sbjct: 403 D-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 791 HLSYEDKDLAKPPVPHTSGNIYVNHNKY 818
+++ DL P + Y +H +
Sbjct: 456 PKTFDSDDLIPPYL---DQYFY-SHIGH 479
Score = 52.2 bits (124), Expect = 2e-06
Identities = 35/244 (14%), Positives = 80/244 (32%), Gaps = 54/244 (22%)
Query: 1294 DNSNNPSSILKKSKATEDCKVKTVQGAPKTEKSQTKSGEYDNLDEREPSTIQLFMGLGLD 1353
D + P SIL K + + + + S T + L ++ +Q F+ L
Sbjct: 37 DVQDMPKSILSKEE------IDHIIMSK-DAVSGTLR-LFWTLLSKQEEMVQKFVEEVLR 88
Query: 1354 KPPSQKPLVYPIRTFNMDIDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSH 1413
+ K L+ PI+T + +Y I+ Y D Q+ ++ S +
Sbjct: 89 --INYKFLMSPIKTEQRQ------PSMMTRMY--IEQRDRLYNDNQVFAKYNVSRL--QP 136
Query: 1414 LFKVRKPNSHLLKDK----IVLEVGCGMG------LLSLFCAEAGAKHV-------ISV- 1455
K+R+ LL+ + +++ G+ + C + +++
Sbjct: 137 YLKLRQ---ALLELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 1456 ----DCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYL 1511
+V+ L + + R + + I ++ + + Y
Sbjct: 191 NCNSPETVLEML------QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 1512 DSLI 1515
+ L+
Sbjct: 245 NCLL 248
Score = 48.3 bits (114), Expect = 2e-05
Identities = 90/709 (12%), Positives = 188/709 (26%), Gaps = 232/709 (32%)
Query: 1029 NNNLNKKTNKQQN-----IQILSPAKKPNKEEDKIEKEENNT-NAKENDE--KSTDDEKN 1080
+++++ +T + Q + + A N + ++ + + +E D S D
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 1081 ------KLDDKAKDTATKLSNS---------ADSIKLNKKDEGSKENKPQQQR-RKFNNF 1124
L K ++ K IK ++ +QR R +N+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 1125 HNSSKYQ--R-HPYHN------NGGDFNYVPVYDGNINKFNKFGGGG------------- 1162
+KY R PY V + G G
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLID----------GVLGSGKTWVALDVCLS 173
Query: 1163 ---NNRYPNHRYYDFDFIDPRSCFFPGSGTPYPQYGGGGPPMFNNLYNSNNYNNNKSKQK 1219
+ ++ ++ ++C P + M L Y + +
Sbjct: 174 YKVQCKMDFKIFW----LNLKNCNSPETVLE----------MLQKLL----YQIDPNWTS 215
Query: 1220 KTDSTNNVDKKQDSTSTDERKKKATQKQQQSEEESKKTSNKKIKFKGPE---ILNETTEP 1276
++D ++N+ K S ++ + + +L
Sbjct: 216 RSDHSSNI--KLRIHSIQAELRRLLKSKP-----------------YENCLLVLLNVQNA 256
Query: 1277 TASSATNSNVTTVSNTADNSNNPSSILKKSKATEDCKVKTVQGAPKTEKSQTKSGEYDNL 1336
A +A N + + T + L + T L
Sbjct: 257 KAWNAFNLSCKILLTTRFKQV--TDFLSAATTTHISLDHHSMT----------------L 298
Query: 1337 DEREPSTIQLF---MGLGLDKPPSQKPLVYP--IRTFNMDIDDMTSREIFEDVYADIKTH 1391
E L + P + P + I D +
Sbjct: 299 TPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---------WDNW 347
Query: 1392 QTTYKDKQLIGCFHDSIINNSHLFKVRKPN--SHLLKDKIVLEVGCGMGLLSLFCAEAGA 1449
+ DK +II +S V +P + LS+F
Sbjct: 348 KHVNCDK------LTTIIESS--LNVLEPAEYRKMFDR------------LSVF-----P 382
Query: 1450 KHV-ISVDCSVITQLTQEVVEENDCSDVITVICRR---MEDIDRLPHGIENVDIIVSNWM 1505
I +++ + +V++ D V+ + + + I
Sbjct: 383 PSAHIPTI--LLSLIWFDVIKS-DVMVVVNKLHKYSLVEKQPKESTISI----------- 428
Query: 1506 GHVLYLD-------------SLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAATK 1552
+YL+ S+++ Y + LI P D +
Sbjct: 429 -PSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPP---------YLD-----Q 471
Query: 1553 YSFWHDVYGFDMEPIQRDLPNIAKFHPVPGD------KVMTDSILIHSIDLNTCSVDDTS 1606
Y + H G ++ I+ + F V D K+ DS ++ + S+ +T
Sbjct: 472 YFYSH--IGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNA----SGSILNTL 524
Query: 1607 FNLEF---AMVAKEGGFVNAFVLYFKVILKLILRVEPH----KFQVLAQ 1648
L+F + + + IL + ++E + K+ L +
Sbjct: 525 QQLKFYKPYICDND----PKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 44.1 bits (103), Expect = 4e-04
Identities = 54/386 (13%), Positives = 104/386 (26%), Gaps = 120/386 (31%)
Query: 923 RQRDRGDTGRHHQFQNNMIKTIDFHQFQNNVMKNHPGN------------KNFKNFN--- 967
Q D T R N ++ ++K+ P K + FN
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 968 -------NKSYGD--KNKNEFKVTKIMQRPV---DENKDEIAK--------LP------I 1001
K D ++ DE K + K LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1002 PL-----GGDKKDDKKVDD--KNVSKDQ--KITKSTNNNLNKKTNKQQ-----------N 1041
P +D D K+V+ D+ I +S+ N L ++ +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 1042 I-----QILSPAKKPNKEEDKIEKEENNTNAKENDEKST-------DDEKNKLDDKAKDT 1089
I ++ + + K + ++ ++ST + K KL+++
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-- 444
Query: 1090 ATKLSNSA-DSIKLNKKDEGSKENKPQQQRRKFNNFHNSSKYQRH-PYHNNGGDFNYVPV 1147
L S D + K + P F++ H +H +
Sbjct: 445 ---LHRSIVDHYNIPKTFDSDDLIPPYL----DQYFYS------HIGHHLKNIE------ 485
Query: 1148 YDGNINKFNKFGGGGNNRYPNHRYYDFDFIDPRSCFFPGSGTPYPQYGGGGPPMFNNLYN 1207
+ + F + DF F++ + T + G + N L
Sbjct: 486 ---HPERMTLF---------RMVFLDFRFLEQKIRH---DSTAWNASGS----ILNTLQQ 526
Query: 1208 SNNYNNNKSKQKKTDSTNNVDKKQDS 1233
Y K D+ ++ ++
Sbjct: 527 LKFY-----KPYICDNDPKYERLVNA 547
Score = 36.0 bits (82), Expect = 0.12
Identities = 38/264 (14%), Positives = 83/264 (31%), Gaps = 83/264 (31%)
Query: 1459 VITQLTQEVVEENDCSDVI----TVICRR-MEDIDRLPHGIENVDII-----------VS 1502
+++ V+ DC DV +++ + ++ I + + V
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 1503 NWMGHVLYLDS--LINAVVYARDRFLKPHG---LILPDRAELYCVAANDTMAATKYSFWH 1557
++ VL ++ L++ + + +P + + R LY ND KY+
Sbjct: 81 KFVEEVLRINYKFLMSPI---KTEQRQPSMMTRMYIEQRDRLY----NDNQVFAKYNVSR 133
Query: 1558 D--------------------VYGFDM---------------EPIQRDLP------NIAK 1576
+ G + +Q + N+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 1577 FHPVPGDKVMTDSILIHSIDLNTCSVDDTSFNLEFAMVAKEGGFVNAFVL-YFKVILKLI 1635
+ P + L++ ID N S D S N++ + + + ++ L L+
Sbjct: 192 CN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LV 249
Query: 1636 LR-VEPHK----F----QVLAQSR 1650
L V+ K F ++L +R
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR 273
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 58.0 bits (140), Expect = 3e-09
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAG-AKHVISVDCS-VITQLTQEVVEENDCSDVITV 1479
+++ K +L+VG L +F + G I+ + Q + V E+ + I V
Sbjct: 17 NYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDV 76
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ +N+D I MG L + + + D+ L+L
Sbjct: 77 RLA---NGLSAFEEADNIDTITICGMGGRL----IADILNNDIDKLQHVKTLVL 123
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 59.0 bits (142), Expect = 1e-08
Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 325 YAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYS-TNSFMAATTHGYS 383
++P+S T P S + +PT + + S + + ++ S YS T+ + T+ YS
Sbjct: 1542 FSPTSPTYSPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1599
Query: 384 SISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQ 443
S + + T PS ++ S YS T SYS P S + + + +S S S T+ S
Sbjct: 1600 PTSPSYSPTSPSYSPTSPS-YSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656
Query: 444 NLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPP 485
P+S SYS S Y TS + S S S TS Y P
Sbjct: 1657 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1698
Score = 56.6 bits (136), Expect = 7e-08
Identities = 46/161 (28%), Positives = 63/161 (39%), Gaps = 18/161 (11%)
Query: 325 YAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSS 384
+ SS P S + +PT A + S + T+ + T+ YS
Sbjct: 1535 FGVSSPGFSPTSPTYSPTSPAYSPTSPSY---------------SPTSPSYSPTSPSYSP 1579
Query: 385 ISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQN 444
S + + T PS + YS T SYS P S + + + +S S S T+ S
Sbjct: 1580 TSPSYSPTSPSYSP-TSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1636
Query: 445 LYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPP 485
P+S SYS S Y TS A S S S TS Y P
Sbjct: 1637 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677
Score = 47.4 bits (112), Expect = 5e-05
Identities = 40/171 (23%), Positives = 67/171 (39%), Gaps = 20/171 (11%)
Query: 308 TPEHSTRDGKLFSNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGG 367
+P +S Y+P+S + P S S +PT + + S + + +
Sbjct: 1581 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--------TSPS 1632
Query: 368 VYSTNSFMAATTHGYSSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGH 427
T+ + T+ YS S + + T P+ ++ S YS T SYS P S + + +
Sbjct: 1633 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPS-YSPTSPSYS--PTSPSYSPTSPSY 1689
Query: 428 QASSLSNSNTT-GYSSQNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTS 477
+S + S T+ YS P+S YS S Y N + S
Sbjct: 1690 SPTSPNYSPTSPSYS--------PTSPGYSPGSPAYSPKQDEQKHNENENS 1732
Score = 40.8 bits (95), Expect = 0.004
Identities = 55/267 (20%), Positives = 78/267 (29%), Gaps = 32/267 (11%)
Query: 349 ASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSSISNTITNTQPSQQQSNNSVYSSTI 408
SN G N + + M + S Y
Sbjct: 1465 GQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGAD----YGEAT 1520
Query: 409 NSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLYQQQPSSVSYSSNSYVYPQTSIA 468
+ + ++ + + + G SS S T+ S P+S +YS S Y TS +
Sbjct: 1521 SPFGAYGEAPT----SPGFGVSSPGFSPTSPTYS-------PTSPAYSPTSPSYSPTSPS 1569
Query: 469 TSSNVSSTSHTSHKYPPYNVDMKNHLDSKSTLETKSSSEHPPYVDY-PNYMGTQYQDSLM 527
S S S TS Y P + S S S P Y P+Y T S
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1627
Query: 528 KDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQPGPPPQSTSDYKMLYWNNVPMPNM 587
P + +P P S + P P S + + P+
Sbjct: 1628 --------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY----SPTSPSY 1675
Query: 588 LHAPPPQAPHSAMYKYTSHIPYDMPTS 614
P +P S Y TS P PTS
Sbjct: 1676 SPTSPSYSPTSPSYSPTS--PNYSPTS 1700
Score = 39.7 bits (92), Expect = 0.009
Identities = 55/300 (18%), Positives = 83/300 (27%), Gaps = 52/300 (17%)
Query: 327 PSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSSIS 386
++ + +P + + + A G A T+ G+ S
Sbjct: 1480 VNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSS 1539
Query: 387 NTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLY 446
+ T P+ YS T +YS S +Y
Sbjct: 1540 PGFSPTSPT--------YSPTSPAYSPTSPSYSPTSPSYS-------------------- 1571
Query: 447 QQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKN---HLDSKSTLETK 503
P+S SYS S Y TS + S S S TS Y P + S +
Sbjct: 1572 ---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628
Query: 504 SSSEHPPYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQ 563
+S + P P+Y T S + P +P P S +
Sbjct: 1629 TSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAY----------SPTSPSYSPTSPSYS 1676
Query: 564 PGPPPQSTSDYKMLYWNNVPMPNMLHAPPPQAPHSAMYKYTSHIPYDMPTSQATQKPFMK 623
P P S + + PN P +P S Y S P P + +
Sbjct: 1677 PTSPSYSPTSPS----YSPTSPNYSPTSPSYSPTSPGYSPGS--PAYSPKQDEQKHNENE 1730
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 22/124 (17%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVD---CSVITQLTQEVVEENDCSDVITV 1479
++K V +VG G G+L++ + GAK V++ D S+ +E N D+
Sbjct: 57 AMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA--AEENAALNGIYDIALQ 114
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGL-----ILP 1534
+ D+D D+IV+N + + L LI + L G I
Sbjct: 115 KTSLLADVD------GKFDLIVANILAEI--LLDLIPQLD----SHLNEDGQVIFSGIDY 162
Query: 1535 DRAE 1538
+
Sbjct: 163 LQLP 166
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 55.6 bits (134), Expect = 2e-08
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRM 1484
+ + VL++GCG G L A+ G + VD T + + +V ++
Sbjct: 51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDR-TLV--DAARAAGAGEVHLASYAQL 106
Query: 1485 EDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHG 1530
+ +P G ++ D+I +N+ + D I ++ A L P G
Sbjct: 107 AEAK-VPVG-KDYDLICANFALL--HQD--IIELLSAMRTLLVPGG 146
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 55.8 bits (134), Expect = 2e-08
Identities = 38/224 (16%), Positives = 67/224 (29%), Gaps = 32/224 (14%)
Query: 1371 DIDDMTSREIFEDVYADIK-----------THQTTYKDKQL--IGCFHDSIINNSHLFKV 1417
D+M E+ D+Y K T T L + HD I S F
Sbjct: 29 STDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATV-SGVLGGMDHVHDVDIEGSRNFIA 87
Query: 1418 RKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVI 1477
P L+ G G+G ++ ++ + + +E E V
Sbjct: 88 SLPGHG---TSRALDCGAGIGRITKNLLTKLYATTDLLE--PVKHMLEEAKRELAGMPVG 142
Query: 1478 TVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL---- 1533
I ++ D+IV W L + + + + L P+G I
Sbjct: 143 KFIL---ASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-QALTPNGYIFFKEN 198
Query: 1534 PDRAELYCVAANDTMAATKYSFWHDVY---GFDM--EPIQRDLP 1572
+ + V D+ + ++ G + E Q + P
Sbjct: 199 CSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWP 242
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 53.2 bits (128), Expect = 8e-08
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVI 1480
++K L++GCG G SL+ A G V + D + I + + EN D +
Sbjct: 29 KVVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIEN--LDNLHTR 85
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ ++ D I+S + L I ++ R KP G L
Sbjct: 86 VVDLNNLT-FD---RQYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNL 133
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 52.6 bits (126), Expect = 3e-07
Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 28/162 (17%)
Query: 1375 MTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVG 1434
MT ++ D H+ ++ + H F VR + + +LE+G
Sbjct: 2 MTISRNYDQEIKDTAGHKY----------AYNFDFDVMHPFMVRA-FTPFFRPGNLLELG 50
Query: 1435 CGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVE--ENDCSDVITVICRRMEDIDRLPH 1492
G + E + V+ ++E + + D IT I R ED
Sbjct: 51 SFKGDFTSRLQEHFND-ITCVE------ASEEAISHAQGRLKDGITYIHSRFEDAQLP-- 101
Query: 1493 GIENVDIIVSNWMGHVL-YLDSLINAVVYARDRFLKPHGLIL 1533
D IV + HVL ++D + + D +L G +
Sbjct: 102 --RRYDNIV---LTHVLEHIDDPVALLKRINDDWLAEGGRLF 138
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center
for eukaryotic structural genomics, CESG, structural
genomics; 2.79A {Cyanidioschyzon merolae}
Length = 281
Score = 52.5 bits (125), Expect = 4e-07
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 19/138 (13%)
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSD--- 1475
L+ K V E+G G GL+S+ AGA V++ D I + + E+ +
Sbjct: 74 QPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSS 133
Query: 1476 ---------VITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFL 1526
V+ D + G++ +++ + +L +A++ + L
Sbjct: 134 ETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVL---LADLLSFHQAHDALLRSVKMLL 190
Query: 1527 KPHGLILPDRAELYCVAA 1544
A
Sbjct: 191 ALPA--NDPTAVALVTFT 206
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 50.3 bits (120), Expect = 9e-07
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVI 1480
+ + +L + G G + F A G V +VD S + + Q E+ + +
Sbjct: 26 NQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKG-----VKIT 79
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ ++ + + IVS + L + VY + LKP G+ +
Sbjct: 80 TVQS-NLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY---QGLKPGGVFI 128
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 50.6 bits (121), Expect = 2e-06
Identities = 34/202 (16%), Positives = 61/202 (30%), Gaps = 18/202 (8%)
Query: 1373 DDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVR-KPNSHLLKDKIVL 1431
DD S + V+ H YK+ ++ + L + L
Sbjct: 28 DDDDSDRFYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGL 87
Query: 1432 EVGCGMGLLSLFCAEA-GAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
++G G G + F G + ++ + V + +E + +D ITV
Sbjct: 88 DLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG---SFLE 143
Query: 1490 LPHGIENVDIIVSNWMG-HVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTM 1548
+P + D I S H + R LKP G++ + D +
Sbjct: 144 IPCEDNSYDFIWSQDAFLHSPDKLKVFQECA----RVLKPRGVMA-----ITDPMKEDGI 194
Query: 1549 AATKYSFWHDVYGF-DMEPIQR 1569
+ D DM +
Sbjct: 195 DKSSIQPILDRIKLHDMGSLGL 216
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 49.1 bits (117), Expect = 2e-06
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 15/137 (10%)
Query: 1406 DSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQ--- 1462
+++I L + IV++ G G + F A +K V + D + +
Sbjct: 2 NAMIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFD---VQEQAL 57
Query: 1463 -LTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGH-----VLYLDSLIN 1516
T + + + + +I E++D I ++ + + +
Sbjct: 58 GKTSQRLSDLGIENT-ELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLE 116
Query: 1517 AVVYARDRFLKPHGLIL 1533
A+ DR L+ G +
Sbjct: 117 AIEKILDR-LEVGGRLA 132
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 50.3 bits (120), Expect = 2e-06
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 13/153 (8%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAK-HVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDI 1487
VLE GCG+G ++ A+ + S+D S + +E E+N +V + +I
Sbjct: 41 VLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA----NI 96
Query: 1488 DRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL---PDRAELYCVAA 1544
LP + D I ++ +L S A+ + + LKP G I D Y
Sbjct: 97 FSLPFEDSSFDHIFVCFVLE--HLQSPEEALKSLK-KVLKPGGTITVIEGDHGSCYFHPE 153
Query: 1545 NDTMAATKYSFWHDVYGFDMEP-IQRDLPNIAK 1576
+ R + + +
Sbjct: 154 GKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQ 186
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 50.0 bits (119), Expect = 3e-06
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGA--KHVISVDCSV--ITQLTQEVVEENDCSDVIT 1478
H + K++++VGCG G +L A+ + +I D S I D ++
Sbjct: 33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVS 92
Query: 1479 VICRRMEDIDRL---PHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+D L + +D+I + H + + L+ G I
Sbjct: 93 FKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSA----YANLRKDGTIA 146
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics,
SGC, structural genomics consortium; HET: SAH; 1.75A
{Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 49.3 bits (117), Expect = 3e-06
Identities = 35/183 (19%), Positives = 62/183 (33%), Gaps = 18/183 (9%)
Query: 1402 GCFHDSIINNSHLF--KVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS- 1458
G IN+S F + + + L+ G G+G ++ + V VD +
Sbjct: 53 GHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITE 112
Query: 1459 -VITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINA 1517
+ Q + EE V C ++D P D+I W+ L L
Sbjct: 113 DFLVQAKTYLGEEGK--RVRNYFCCGLQDFTPEPDS---YDVIWIQWVIGHLTDQHLAEF 167
Query: 1518 VVYARDRFLKPHGLIL---PDRAELYCVAANDTMAATKYSFWHDVY---GFDM--EPIQR 1569
+ + L+P+G+I+ E + D+ + G + E Q
Sbjct: 168 LRRCK-GSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEERQE 226
Query: 1570 DLP 1572
+LP
Sbjct: 227 NLP 229
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 49.3 bits (117), Expect = 3e-06
Identities = 18/152 (11%), Positives = 44/152 (28%), Gaps = 12/152 (7%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
+++ CG G + F ++ VI +D S + L E+ + + + I+ ++
Sbjct: 60 LIDFACGNGTQTKFLSQFFP-RVIGLDVSK-SAL--EIAAKENTAANISYRLLDGLVPEQ 115
Query: 1490 LPHGIENV--DIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDT 1547
+ I H + ++ R L G + L +
Sbjct: 116 AAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLR-ILLGKQGAMY-----LIELGTGCI 169
Query: 1548 MAATKYSFWHDVYGFDMEPIQRDLPNIAKFHP 1579
+ +++ + F
Sbjct: 170 DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTA 201
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 49.0 bits (117), Expect = 3e-06
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 19/150 (12%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITVICRRMEDI 1487
LE+GC G + A + +D I + Q + I+ +
Sbjct: 55 GLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWSH----ISWAATDILQF 109
Query: 1488 DRLPHGIENVDIIVSNWMG-HVLYLDSLINAVVYARDRFLKPHGLIL------PDRAELY 1540
D+IV + ++ + + A+ + L P G ++
Sbjct: 110 --STAE--LFDLIVVAEVLYYLEDMTQMRTAIDNMV-KMLAPGGHLVFGSARDATCRRWG 164
Query: 1541 CVAANDTMAATKYSFWHDVYGFDMEPIQRD 1570
VA +T+ +V + D
Sbjct: 165 HVAGAETVITILTEALTEVERVQCQGQSAD 194
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 48.6 bits (116), Expect = 6e-06
Identities = 19/136 (13%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLT--QEVVEENDCSDVITVICRRMEDI 1487
+L++G G G + A +D S + EE S+ + I
Sbjct: 40 ILDLGSGSGEMLCTWARDHGITGTGIDMSS-LFTAQAKRRAEELGVSERVHFIHNDAAGY 98
Query: 1488 DRLPHGIENVDIIVSNWMG-HVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAAND 1546
E D+ + + LKP G++L +
Sbjct: 99 V----ANEKCDVAACVGATWIAGGFAGAEELL----AQSLKPGGIML-----IGEPYWRQ 145
Query: 1547 TMAATKYSFWHDVYGF 1562
A
Sbjct: 146 LPATE--EIAQACGVS 159
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Length = 219
Score = 48.2 bits (115), Expect = 6e-06
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLT--QEVVEENDCSDVITVICR 1482
+ +++G G G LS+ A+ + ++D S + + + + +D I ++
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSK-HMNEIALKNIADANLNDRIQIVQ- 99
Query: 1483 RMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAV--VYARDRFLKPHGLIL 1533
D+ +P D+IVS + + + A +Y R LK G
Sbjct: 100 --GDVHNIPIEDNYADLIVSRGSVF--FWEDVATAFREIY---RILKSGGKTY 145
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 47.6 bits (113), Expect = 6e-06
Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 19/138 (13%)
Query: 1407 SIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEA-GAK-HVISVDCSVITQ-- 1462
+ + SH + + + V++ CG G + F A G V D I
Sbjct: 7 NSLGQSHDYI----KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFD---IQDKA 59
Query: 1463 --LTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLY-----LDSLI 1515
T + + + + D +T+I +++D+ + ++ + ++ I
Sbjct: 60 IANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI 119
Query: 1516 NAVVYARDRFLKPHGLIL 1533
A+ A L G+I
Sbjct: 120 QALSKAM-ELLVTGGIIT 136
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC,
methyltransferase, LOC84291, transferase; HET: SAH; 1.30A
{Homo sapiens}
Length = 215
Score = 47.7 bits (113), Expect = 7e-06
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 15/152 (9%)
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEEND--CSDVIT 1478
L + +L +GCG LS G +V SVD S VV + V
Sbjct: 37 EPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYS------SVVVAAMQACYAHVPQ 90
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLD-----SLINAVVYARDRFLKPHGLIL 1533
+ M D+ +L + D+++ L ++ + V+ D+ L +L
Sbjct: 91 LRWETM-DVRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVL 149
Query: 1534 PDRAELYCVAANDTMAATKYSFWHDVYGFDME 1565
+ + T++ + YG+ +
Sbjct: 150 VPGGRFISMTSAAPHFRTRH-YAQAYYGWSLR 180
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 48.0 bits (114), Expect = 8e-06
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVIC 1481
++ K VL++ CG+G S + G V+ VD S + E S V
Sbjct: 34 KYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDIS-EDMI--RKAREYAKSRESNVEF 89
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYAR-DRFLKPHGLIL 1533
D +L + D ++ + + L V+ R LKP G +
Sbjct: 90 IVG-DARKLSFEDKTFDYVIFIDSIV--HFEPLELNQVFKEVRRVLKPSGKFI 139
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 47.3 bits (112), Expect = 9e-06
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 11/83 (13%)
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVI 1480
N + + V++ G G G+L+ GA+ V + D I E + N + +
Sbjct: 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD---IDPDAIETAKRN--CGGVNFM 100
Query: 1481 CRRMEDIDRLPHGIENVDIIVSN 1503
+ +I D + N
Sbjct: 101 VADVSEIS------GKYDTWIMN 117
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural
genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus}
PDB: 2yr0_A
Length = 263
Score = 48.0 bits (114), Expect = 9e-06
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 13/142 (9%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
LE+G G G ++L G I++D L EV + V + D
Sbjct: 43 FLELGVGTGRIALPLIARGY-RYIALDADA-AML--EVFRQKIAGVDRKVQVVQA-DARA 97
Query: 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMA 1549
+P E+V ++ + H + + A R LKP G +L A +
Sbjct: 98 IPLPDESVHGVIVVHLWH--LVPDWPKVLAEAI-RVLKPGGALL-----EGWDQAEASPE 149
Query: 1550 ATKYSFWHDVYGFDMEPIQRDL 1571
T W + P++R L
Sbjct: 150 WTLQERWRAFAAEEGFPVERGL 171
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 48.0 bits (115), Expect = 1e-05
Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 27/126 (21%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVD---CSVITQLTQEVVEENDCSDVITV 1479
HL VL++G G G+L++ + G K + VD + + + N
Sbjct: 117 HLRPGDKVLDLGTGSGVLAIAAEKLGGK-ALGVDIDPMVLPQ--AEANAKRNGVRPRFLE 173
Query: 1480 ICRRMEDIDRLPHGIEN--VDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGL-----I 1532
L + D++V+N + +L L P G I
Sbjct: 174 G--------SLEAALPFGPFDLLVANLYAEL--HAALAPRYR----EALVPGGRALLTGI 219
Query: 1533 LPDRAE 1538
L DRA
Sbjct: 220 LKDRAP 225
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 46.7 bits (111), Expect = 1e-05
Identities = 17/105 (16%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDID 1488
+L+VG G G + A G + ++ + + +L ++ +T + D
Sbjct: 45 ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTHPS------VTFHHGTITD-- 95
Query: 1489 RLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
L + +++ + + L +A+V R ++ G +L
Sbjct: 96 -LSDSPKRWAGLLAWYSLIHMGPGELPDALVALR-MAVEDGGGLL 138
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 46.3 bits (110), Expect = 2e-05
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 13/106 (12%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE--NDCSDVITVICRRMEDI 1487
+L+ GCG G + + ++ G V+ D +++ D + V+ D+
Sbjct: 50 ILDAGCGQGRIGGYLSKQGH-DVLGTDLD------PILIDYAKQDFPEARWVVG----DL 98
Query: 1488 DRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ D+IVS + + R L G +
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAV 144
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 12/120 (10%)
Query: 1425 LKDKIVLEVGCGMG-LLSLFCAEAGAKHVISVDCSVIT-----QLTQEVVEENDCSDVIT 1478
+ V+++GCG G LL + ++ + + VD S + + + + + +
Sbjct: 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL--PDR 1536
+I + D+ HG D + L L L A F +P +I+ P+
Sbjct: 88 LIQGALTYQDKRFHG---YDAATVIEVIEHLDLSRL-GAFERVLFEFAQPKIVIVTTPNI 143
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 46.4 bits (110), Expect = 2e-05
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRME 1485
DK VL+ G G L L ++ S QL + E + + +
Sbjct: 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEIS-DLQL--KKAENFSRENNFKLNISKG- 78
Query: 1486 DIDRLPHGIENVDIIVSNWMGHVLYLDSLINAV--VYARDRFLKPHGLIL 1533
DI +LP E++ + S + + + A+ + R LKP GL
Sbjct: 79 DIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIK---RVLKPGGLAC 125
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 46.1 bits (109), Expect = 3e-05
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 1425 LKDKIVLEVGCGMG-LLSLFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITVIC 1481
+ K V+++GCG G LLSL + + + VD S V+ + + + I
Sbjct: 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRIS 87
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL--PDR 1536
+ D + L + L A F +P +I+ P++
Sbjct: 88 LFQSSLVYRDKRFSGYDAATVIEVIEHLDENRL-QAFEKVLFEFTRPQTVIVSTPNK 143
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH;
1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 45.7 bits (108), Expect = 4e-05
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE--NDCSDVITVICRRMEDI 1487
VLE+ G G + + V ++D S E++ E D + R +D+
Sbjct: 50 VLELASGTGYWTRHLSGLAD-RVTALDGS------AEMIAEAGRHGLDNVEF---RQQDL 99
Query: 1488 DRLPHGIENVDIIVSNWMGHVL--YLDSLINAVVYARDRFLKPHGLIL 1533
D + H L D A + + P G++
Sbjct: 100 FDWTPD-RQWDAVFFA---HWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding,
liver cytosol, transferase-transferase inhibitor C; HET:
C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A*
1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A
1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Length = 293
Score = 46.2 bits (109), Expect = 5e-05
Identities = 29/186 (15%), Positives = 56/186 (30%), Gaps = 32/186 (17%)
Query: 1362 VYPIRTFNM---DIDDMTSREIFEDVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVR 1418
VY R+ + I D + V+ + + ++
Sbjct: 5 VYRTRSLGVAAEGIPDQYADGEAARVWQLYI-----GDTRSRTAEYKAWLLGLLRQHGCH 59
Query: 1419 KPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDV 1476
+ VL+V CG G+ S+ E G V SVD S + +E
Sbjct: 60 R----------VLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAF 108
Query: 1477 ITVICR--RMEDIDRLPHGIENVDIIVSNWMGHVL-YLDSLINAVVYARD------RFLK 1527
+ +D+ + D ++ +G+ +L R ++
Sbjct: 109 DKWVIEEANWLTLDKDVPAGDGFDAVIC--LGNSFAHLPDSKGDQSEHRLALKNIASMVR 166
Query: 1528 PHGLIL 1533
P GL++
Sbjct: 167 PGGLLV 172
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 45.5 bits (108), Expect = 5e-05
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRM 1484
+ K VL++GC G L E G + V ++ E +E + V+ +
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKENGTR-VSGIEAF---PEAAEQAKEK----LDHVVLGDI 82
Query: 1485 EDIDRLPHGIENVDIIVSNWMGHVL----YLDSLINAVVYARDRFLKPHGLIL 1533
E +D +P+ E D ++ G VL ++I V ++K +G+IL
Sbjct: 83 ETMD-MPYEEEQFDCVI---FGDVLEHLFDPWAVIEKVK----PYIKQNGVIL 127
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 45.2 bits (107), Expect = 6e-05
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
VLE G G G L+ AG V ++ S + +E + D
Sbjct: 49 VLEFGVGTGNLTNKLLLAGR-TVYGIEPS-REMR--MIAKEKLPKEFSITEG----DFLS 100
Query: 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
++D IVS + H L D A+ + L G I+
Sbjct: 101 FEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYS-QLLNKGGKIV 142
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.8 bits (105), Expect = 6e-05
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 1045 LSPAKKPNKEEDKIEK--EENNTNAKENDEKSTDDEKNKLDDKAKDTATKLSNSADSIKL 1102
++ A + +E + I K EE +E D S + + +KAK
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASK-VMEQEWREKAKK-------------- 118
Query: 1103 NKKDEGSKENKPQQQRRKFNN 1123
+E ++ Q ++ K NN
Sbjct: 119 -DLEEWNQRQSEQVEKNKINN 138
Score = 39.8 bits (92), Expect = 0.003
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 1034 KKTNKQQNIQILSPAKKPNKEEDKIEKEENNTNA-KENDE--KSTDD--EKNKLDDKAKD 1088
+K ++Q ++ + K+ ++E A K+ +E + + EKNK++++ D
Sbjct: 88 RKWREEQRKRL---QEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 1089 TATKLSNSADSI 1100
A AD I
Sbjct: 143 KAFYQQPDADII 154
Score = 34.7 bits (79), Expect = 0.15
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 1053 KEEDKIEKEENNTNAKENDEKSTDDEKNKLDDKAKDTATKLSNSADSIKLNKKDEGSKEN 1112
+EE + +E + +K +++ + K L++ + + ++ + N+ + K
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK---NKINNRIAD--KAF 145
Query: 1113 KPQQQR 1118
QQ
Sbjct: 146 Y--QQP 149
Score = 31.7 bits (71), Expect = 1.4
Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 28/79 (35%)
Query: 991 ENKDEIAKLPIPLGGDKKDDKK-----------VDDKNVSKDQKITKSTNNNLNKKTNKQ 1039
E + + +L D +++ N + +++ K NK N+
Sbjct: 93 EQRKRLQEL------DAASKVMEQEWREKAKKDLEEWNQRQSEQVEK------NKINNRI 140
Query: 1040 QNIQILSPAKKPNKEEDKI 1058
+ + D I
Sbjct: 141 ADKAFYQ-----QPDADII 154
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 45.3 bits (107), Expect = 7e-05
Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 29/195 (14%)
Query: 1375 MTSREIFEDV---YADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVL 1431
MT E + + +II ++ K+ VL
Sbjct: 7 MTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFE--------QYVKKEAEVL 58
Query: 1432 EVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLP 1491
+VGCG G + + G + VD S + + +E ++ I D+ LP
Sbjct: 59 DVGCGDGYGTYKLSRTGY-KAVGVDISE-VMI--QKGKERGEGPDLSFIK---GDLSSLP 111
Query: 1492 HGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVAANDTMAAT 1551
E + I++ + + + A+ + R LK G C+A A
Sbjct: 112 FENEQFEAIMAINSLE--WTEEPLRALNEIK-RVLKSDGYA--------CIAILGPTAKP 160
Query: 1552 KYSFWHDVYGFDMEP 1566
+ + + +YG D+
Sbjct: 161 RENSYPRLYGKDVVC 175
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 45.3 bits (107), Expect = 9e-05
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVI 1480
++ VL++GCG G SL+ + G V S D + I L + +EN I+
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLN---ISTA 172
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ + + EN D IVS + L + +++ G L
Sbjct: 173 LYDINAAN-IQ---ENYDFIVSTVVFMFLN-RERVPSIIKNMKEHTNVGGYNL 220
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 44.5 bits (105), Expect = 9e-05
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
+LE+GCG G + AG V + D S E+ E V +D
Sbjct: 47 ILELGCGAGYQAEAMLAAGF-DVDATDGS------PELAAEASRRLGRPVRTMLFHQLDA 99
Query: 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ + D + ++ + D L + + R LKP GL
Sbjct: 100 I----DAYDAVWAHACLLHVPRDELADVLKLIW-RALKPGGLFY 138
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 44.7 bits (106), Expect = 1e-04
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 17/119 (14%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVI 1480
+ L L++ CG G L+ +VD S +++ + + +
Sbjct: 34 NNLVFDDYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRSQG---LKPRLA 89
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNW--MGHVLYLDSLINAV--VYARDRFLKPHGLILPD 1535
C+ + +++ D+I +++ D L V LK G+ + D
Sbjct: 90 CQDISNLNIN----RKFDLITCCLDSTNYIIDSDDLKKYFKAVS---NHLKEGGVFIFD 141
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 43.9 bits (103), Expect = 1e-04
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 23/158 (14%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRR 1483
++ K+V ++G G G+LS GAK VI V+ + E + E V
Sbjct: 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGK--FKVFIGD 105
Query: 1484 MEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVA 1543
+ + + VDI++ N + ++ A + ++ Y +
Sbjct: 106 VSEFN------SRVDIVIMNPPFGSQRKHADRPFLLKA----FEISDVV-------YSIH 148
Query: 1544 ANDTMAATKYSFWHDVYGFDMEPIQR---DLPNIAKFH 1578
+ +GF + ++P FH
Sbjct: 149 LAKPEVRRFIEKFSWEHGFVVTHRLTTKIEIPLQFFFH 186
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics
biosynthesis, structural genomics; 2.00A {Amycolatopsis
orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 44.9 bits (106), Expect = 1e-04
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEEN-DCSDVITV 1479
VLE+ GMG L+ + G V +++ S + + + E D D T+
Sbjct: 79 TGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTL 137
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMGHVL-YLDS--LINAVVYARDRFLKPHGLIL 1533
+ M L + +V + LD R L+P G L
Sbjct: 138 VQGDMSAFA-LD---KRFGTVVI--SSGSINELDEADRRGLYASVR-EHLEPGGKFL 187
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 43.1 bits (102), Expect = 1e-04
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRR 1483
K ++++ GCG G + E K + +D + + L + V+E VIT
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEFATK-LYCIDIN-VIAL--KEVKEK-FDSVIT----- 64
Query: 1484 MEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
D +VD I+ H +D + + + R LK G ++
Sbjct: 65 --LSDPKEIPDNSVDFILFANSFH--DMDDKQHVISEVK-RILKDDGRVI 109
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 44.6 bits (105), Expect = 2e-04
Identities = 20/171 (11%), Positives = 47/171 (27%), Gaps = 28/171 (16%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAK--HVISVDCS--VITQLTQEVVEENDCSDVIT 1478
+ K +++ GCG G L L + +D ++ + +
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-----YD 73
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVL-YLDSLINAVVYARDRFLKPHGLIL---P 1534
D + + DI + + L ++ + + +K G I+ P
Sbjct: 74 SEFLEG-DATEIELN-DKYDIAICH---AFLLHMTTPETMLQKMI-HSVKKGGKIICFEP 127
Query: 1535 DRAELYCVAANDTMAATKYSF---WHDVYGFDME------PIQRDLPNIAK 1576
D +++ ++ D + I +P
Sbjct: 128 HWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLS 178
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 44.2 bits (104), Expect = 2e-04
Identities = 28/154 (18%), Positives = 46/154 (29%), Gaps = 22/154 (14%)
Query: 1430 VLEVGCGMGLLSLFCAEA-GAK-HVISVDCSVITQLT-------QEVVEENDCSDVITVI 1480
+LE+GCG G LS A+ G+ HV +D + + D +TV
Sbjct: 47 ILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVH 106
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVL-YLDSLINAVVYARDRFLKPHGLILPDRAEL 1539
D P ++ D +V + H L Y S + + + +
Sbjct: 107 FNTNLSDDLGPIADQHFDRVV---LAHSLWYFASA--NALALLFKNMAAVCDHV------ 155
Query: 1540 YCVAANDTMAATKYSFWHDVYGFDMEPIQRDLPN 1573
VA H + P+
Sbjct: 156 -DVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPS 188
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 44.0 bits (104), Expect = 2e-04
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRMEDID 1488
++++ G G++ L + ++ V+ + + + V N D I +I ++ I
Sbjct: 53 IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
Query: 1489 RLPHGIENVDIIVSN 1503
L E DI+ N
Sbjct: 113 DL-IPKERADIVTCN 126
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for structural
genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 43.5 bits (102), Expect = 2e-04
Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 22/107 (20%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE--NDCSDVITVICRRMEDI 1487
VLE GCG G + A + D S E+++ +
Sbjct: 52 VLEAGCGHGPDAARFGPQAA-RWAAYDFS------PELLKLARANAPHADVYEWN---GK 101
Query: 1488 DRLP-HGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
LP +IVS + ++ P L
Sbjct: 102 GELPAGLGAPFGLIVSRR--------GPTSVILRLP-ELAAPDAHFL 139
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 43.7 bits (103), Expect = 3e-04
Identities = 20/112 (17%), Positives = 43/112 (38%), Gaps = 15/112 (13%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE-NDCSDVITVIC 1481
+L K ++ ++G G G S+ A G V +V+ S + ++ V
Sbjct: 31 NLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPS------IVMRQQAVVHPQVEWFTG 83
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ L ++VD ++S H + L + + R ++ ++L
Sbjct: 84 ----YAENLALPDKSVDGVISILAIH--HFSHLEKSFQEMQ-RIIRDGTIVL 128
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 43.3 bits (102), Expect = 3e-04
Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 17/160 (10%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVI 1480
H K +L+V CG G+ A++ V ++ S + + + +
Sbjct: 47 HSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPD-------AVLH 98
Query: 1481 CRRMEDIDRLPHGIENVDIIVS--NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAE 1538
M D + + +GH+ L A+ + P G+++ +
Sbjct: 99 HGDMRDFSLG----RRFSAVTCMFSSIGHLAGQAELDAALERFA-AHVLPDGVVVVEPWW 153
Query: 1539 LYCVAANDTMAATKYSFWHDVYGFDMEPIQRDLPNIAKFH 1578
+AA + + H
Sbjct: 154 FPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVH 193
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 43.0 bits (100), Expect = 5e-04
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCS 1458
+ + VL++GC +G L+L A G ++ +D
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID 79
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 42.0 bits (99), Expect = 8e-04
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITV 1479
+ K + ++GCG G +L A+ + V VD S + ++ +E N +
Sbjct: 29 EQVEPGKRIADIGCGTGTATLLLAD-HYE-VTGVDLSEEMLEIAQEKAMETNRH---VDF 83
Query: 1480 ICRRMEDIDRLPHGIENVDIIVS--NWMGHVLYLDSLINAVVYARDRFLKPHGLILPD 1535
+ M +++ LP E VD I + + ++ + A R L G +L D
Sbjct: 84 WVQDMRELE-LP---EPVDAITILCDSLNYLQTEADVKQTFDSAA-RLLTDGGKLLFD 136
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase,
nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Length = 241
Score = 41.9 bits (98), Expect = 0.001
Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 15/127 (11%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVIT-QLTQEVVEENDCSDVITVI 1480
S K +V++ CG+G ++ A G VI++D + L + E +D I I
Sbjct: 74 SQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFI 132
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELY 1540
C + V++L YA ++ PD E++
Sbjct: 133 CGDFLLLASFLK-------------ADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF 179
Query: 1541 CVAANDT 1547
++ T
Sbjct: 180 RLSKKIT 186
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic,
SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces
venezuelae}
Length = 239
Score = 41.7 bits (98), Expect = 0.001
Identities = 23/161 (14%), Positives = 51/161 (31%), Gaps = 17/161 (10%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITV 1479
S + +L+V CG G + ++ S +T + + + T+
Sbjct: 36 SRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD-------ATL 87
Query: 1480 ICRRMEDIDRLPHGIENVDIIVS--NWMGHVLYLDSLINAVVYARDRFLKPHGLILPDRA 1537
M D +VS + +G++ + L AV L+P G+++ +
Sbjct: 88 HQGDMRDFRLG----RKFSAVVSMFSSVGYLKTTEELGAAVASFA-EHLEPGGVVVVEPW 142
Query: 1538 ELYCVAANDTMAATKYSFWHDVYGFDMEPIQRDLPNIAKFH 1578
A+ ++A ++ + H
Sbjct: 143 WFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVH 183
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 41.0 bits (96), Expect = 0.002
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVIC 1481
+L VL++G G G SLF E G V+ VD S L EV E +V+
Sbjct: 50 EYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSK-EML--EVAREKGVKNVV---- 101
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVL-YLDSLINAVVYARDRFLKPHGLIL 1533
+ LP + +++ +G VL Y+++ A R R L P GL++
Sbjct: 102 --EAKAEDLPFPSGAFEAVLA--LGDVLSYVENKDKAFSEIR-RVLVPDGLLI 149
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 41.0 bits (96), Expect = 0.002
Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 31/130 (23%)
Query: 1417 VRKPNSHLL------KDKIVLEVGCGMGLLSLFCAEA-GAKHVISVDCSVITQLTQEVVE 1469
+P LL + ++GCG G + + G + +D +++E
Sbjct: 18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD------DDMLE 71
Query: 1470 E--NDCSDVITVICRRMEDIDRLPHGIENVDIIVSN----WMGHVLYLDSLINAVVYARD 1523
+ + + D+ + D++ +N W+ ++++ ++
Sbjct: 72 KAADRLPNT-NFGKA---DLATWKPA-QKADLLYANAVFQWVPD---HLAVLSQLM---- 119
Query: 1524 RFLKPHGLIL 1533
L+ G++
Sbjct: 120 DQLESGGVLA 129
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 40.5 bits (95), Expect = 0.002
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVV----EENDCSDVITV 1479
L ++ VL++G G+G ++ E H +D + +V E ++ I
Sbjct: 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGID------ICSNIVNMANERVSGNNKIIF 106
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSNWMG---HVLYLDSLINAVVYARDRFLKPHGLIL 1533
DI N D+I S + + L ++LKP G +L
Sbjct: 107 EAN---DILTKEFPENNFDLIYSRDAILALSLENKNKLFQKC----YKWLKPTGTLL 156
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET:
SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 40.4 bits (94), Expect = 0.002
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVI-TQLTQEVVEENDCSDVITVI 1480
+ L L GCG G + A + V+ +D S E + ++ + +
Sbjct: 62 TSSLPLGRALVPGCGGGHDVVAMASPE-RFVVGLDISESALAKANETYGSSPKAEYFSFV 120
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
D+ E D+I + + A + LKP G ++
Sbjct: 121 KE---DVFTWRPT-ELFDLIFDYVFFCAIE-PEMRPAWAKSMYELLKPDGELI 168
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative
methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Length = 279
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 31/128 (24%)
Query: 1417 VRKPNSHLL------KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE 1470
V + LL + +L++GCG G L+ A++GA V+ D + ++E+
Sbjct: 42 VWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNA------ATMIEK 94
Query: 1471 --NDCSDVITVICRRMEDIDRLPHGIENVDIIVSN----WMGHVLYLDSLINAVVYARDR 1524
+ + + D + +D + SN W+ ++ I ++ +
Sbjct: 95 ARQNYPHLHFDVA----DARNFRVD-KPLDAVFSNAMLHWVKE---PEAAIASIH----Q 142
Query: 1525 FLKPHGLI 1532
LK G
Sbjct: 143 ALKSGGRF 150
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 40.7 bits (95), Expect = 0.003
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAK-HVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDI 1487
++++GCG G++ L + + V+ VD S + ++ VE N + +
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL 285
Query: 1488 DRLPHGIENVDIIVSNW----MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVA 1543
+ + ++ N + ++ + + R LK +G ELY VA
Sbjct: 286 SGVEP--FRFNAVLCNPPFHQQHALTD--NVAWEMFHHARRCLKING-------ELYIVA 334
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 40.9 bits (96), Expect = 0.003
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVI 1480
+ VL+V G ++ A AGA VI +D S + +E + N D + I
Sbjct: 213 KWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI 272
Query: 1481 C 1481
Sbjct: 273 V 273
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 41.0 bits (95), Expect = 0.004
Identities = 22/158 (13%), Positives = 44/158 (27%), Gaps = 15/158 (9%)
Query: 1425 LKDKIVLEVGCGMGLLS--LFCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITVI 1480
+++ GCG G L L + +I VD S + + + + + +
Sbjct: 720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKS 779
Query: 1481 CRRME-DIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL--PDR- 1536
+ I + +VDI + + D P LI+ P+
Sbjct: 780 ATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQA-CEFGEKVLSLFHPKLLIVSTPNYE 838
Query: 1537 ------AELYCVAANDTMAATKYSFWHDVYGFDMEPIQ 1568
+ F + + F+ Q
Sbjct: 839 FNTILQRSTPETQEENNSEPQLPKFRNHDHKFEWTREQ 876
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase
fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 40.4 bits (95), Expect = 0.004
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 1417 VRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEEN 1471
R +++K VL G ++ G V+SVD S Q ++ +N
Sbjct: 211 SRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTS---QEALDIARQN 262
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 39.8 bits (93), Expect = 0.005
Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 14/146 (9%)
Query: 1391 HQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAK 1450
H ++D D+ + + + VL+VGCG+G ++ A A
Sbjct: 29 HFGYWEDAGADVSVDDATDRLTDEM-IAL--LDVRSGDRVLDVGCGIGKPAVRLATARDV 85
Query: 1451 HVISVDCSVITQLT--QEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMG-H 1507
V + S Q+ ++ +T D LP + D + + H
Sbjct: 86 RVTGISIS-RPQVNQANARATAAGLANRVTFSYA---DAMDLPFEDASFDAVWALESLHH 141
Query: 1508 VLYLDSLINAVVYARDRFLKPHGLIL 1533
+ + + R L+P G +
Sbjct: 142 MPDRGRALREMA----RVLRPGGTVA 163
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 39.4 bits (92), Expect = 0.005
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 20/113 (17%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSDVITVICRRMEDI 1487
VL++ CG G+ +L AE G V+ +D + ++ E N I + + +I
Sbjct: 45 VLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERN---LKIEFLQGDVLEI 100
Query: 1488 DRLPHGIENVDIIVSNWMGHVL-YLDS--LINAV--VYARDRFLKPHGLILPD 1535
D + + Y D L V LKP G+ + D
Sbjct: 101 AFK----NEFDAVTM--FFSTIMYFDEEDLRKLFSKVA---EALKPGGVFITD 144
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 39.9 bits (93), Expect = 0.006
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDID 1488
VL++G G G L+L A GA+ V+ V+ + Q+ +E N + + +
Sbjct: 237 VLDLGAGYGALTLPLARMGAE-VVGVEDDLASVLSLQKGLEANA----LKAQALHSDVDE 291
Query: 1489 RLPHGIENVDIIVSN---WMGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVA 1543
L DIIV+N +G + + + A V L+P G + V+
Sbjct: 292 ALTEE-ARFDIIVTNPPFHVGGAV-ILDVAQAFVNVAAARLRPGG-------VFFLVS 340
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 39.2 bits (90), Expect = 0.008
Identities = 29/176 (16%), Positives = 56/176 (31%), Gaps = 18/176 (10%)
Query: 1417 VRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS----------VITQLTQE 1466
+ K +D VL++GCG G L + ++ D + +
Sbjct: 25 LEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRR 84
Query: 1467 VVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLD-SLINAVVYARDRF 1525
E ++ IT + ID+ DI ++ H + + ++
Sbjct: 85 DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACER 144
Query: 1526 LKPHGLIL---PDRAELYCVAANDTMAATKYSFWHDVYGFDMEPIQRDLPNIAKFH 1578
L P G + P+ EL A+ SF +++Y + K+
Sbjct: 145 LSPGGYFIGTTPNSFELI----RRLEASETESFGNEIYTVKFQKKGDYPLFGCKYD 196
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 39.0 bits (90), Expect = 0.009
Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 1423 HLLKDKIVLEVGCG-MGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVI 1480
+ + + +G G + L + + V V+ I +L+++V+E V VI
Sbjct: 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV-NVI 177
Query: 1481 CRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL-----PD 1535
D + +V ++ + ++ R++ I+
Sbjct: 178 T---GDETVIDGLEFDVLMVAALAEPKRRVFRNIH--------RYVDTETRIIYRTYTGM 226
Query: 1536 RAELYCVA 1543
RA LY
Sbjct: 227 RAILYAPV 234
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 38.6 bits (90), Expect = 0.009
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 21/146 (14%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVIC 1481
LL + +E+G G G ++ I V+ S E+ + + V+
Sbjct: 43 KCLLPEGRGVEIGVGTGRFAVPLKI-----KIGVEPS-ERMA--EIARKRG----VFVLK 90
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVL-YLDSLINAVVYARDRFLKPHG-LILPDRAEL 1539
+ LP E+ D + + ++D A+ A R LK G LI+
Sbjct: 91 ---GTAENLPLKDESFDFALMV---TTICFVDDPERALKEAY-RILKKGGYLIVGIVDRE 143
Query: 1540 YCVAANDTMAATKYSFWHDVYGFDME 1565
+ K F+ + F E
Sbjct: 144 SFLGREYEKNKEKSVFYKNARFFSTE 169
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 38.1 bits (89), Expect = 0.011
Identities = 30/178 (16%), Positives = 64/178 (35%), Gaps = 43/178 (24%)
Query: 1383 DVYADIKTHQTTYKDKQLIGCFHDSIINNSHLFKVRK--PNSHLL-------KDKIVLEV 1433
+D+K + + K+L +S +F K + +L KD +L++
Sbjct: 6 TTKSDVKIVEDILRGKKL------KFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDL 59
Query: 1434 GCGMGLLSLFCAEAGAKHVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDIDRLPH 1492
GCG G++ + A+ K D + +L +E ++ N+ + + D+
Sbjct: 60 GCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH--SDLYENVK 116
Query: 1493 GIENVDIIVSNW-------MGHVLYLDSLINAVVYARDRFLKPHGLILPDRAELYCVA 1543
+ I++N + H + + LK +G E++ V
Sbjct: 117 D-RKYNKIITNPPIRAGKEVLHRIIEEGK---------ELLKDNG-------EIWVVI 157
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 38.2 bits (89), Expect = 0.016
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 17/82 (20%)
Query: 1430 VLEVGCGMGL----LSLFCAEAGAKHVISVD-----CSVITQLTQEVVEENDCSDVITVI 1480
VL++G G G L + E ++ VD + + + +E +
Sbjct: 84 VLDLGTGAGFPGLPLKIVRPEL---ELVLVDATRKKVAFV----ERAIEVLGLKGA-RAL 135
Query: 1481 CRRMEDIDRLPHGIENVDIIVS 1502
R E + R E V+
Sbjct: 136 WGRAEVLAREAGHREAYARAVA 157
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 38.3 bits (89), Expect = 0.017
Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 22/120 (18%)
Query: 1419 KPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLT--QEVVEENDCSDV 1476
P+ +++ GCG G + V V S Q E D
Sbjct: 116 GPDDT------LVDAGCGRGGSMVMAHRRFGSRVEGVTLSA-AQADFGNRRARELRIDDH 168
Query: 1477 ITVICRRMEDIDRLPHGIENVDIIVSNWM-GHVLYLDSLINAVVYAR--DRFLKPHGLIL 1533
+ M D + + ++W +Y ++ RFLK G +
Sbjct: 169 VRSRVCNMLDTP------FDKGAVTASWNNESTMY----VDLHDLFSEHSRFLKVGGRYV 218
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP}
PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 38.1 bits (88), Expect = 0.019
Identities = 23/127 (18%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 1420 PNSHLLKDKIVLEVGCGMGLLSLFCAEA-GAK-HVISVDCSV--------ITQLTQEVVE 1469
P L+ VL++GCG G ++ G VI VD + E
Sbjct: 77 PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136
Query: 1470 ENDCSDVITVICRRMEDIDR---LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFL 1526
+ + + +E++ +VDI++SN + + + + R L
Sbjct: 137 GSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCN--LSTNKLALFKEIH-RVL 193
Query: 1527 KPHGLIL 1533
+ G +
Sbjct: 194 RDGGELY 200
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 37.8 bits (88), Expect = 0.019
Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 27/168 (16%)
Query: 1370 MDIDDMTSREIFEDVYADIKTHQTTYKD--KQLIGCFHDSIINNSHLFKVRKPNSHLLKD 1427
M + ++ + F+ V Y + ++ I CF D + + V N
Sbjct: 1 MSLSEI--KRKFDAVSG-------KYDEQRRKFIPCFDDFYGVSVSIASVDTENPD---- 47
Query: 1428 KIVLEVGCGMGLLSLFCAEAGAK-HVISVDCSVITQLTQEVVEENDCSDV-ITVICRRME 1485
+L++G G GLLS F E + VD S L E+ + ++ + I
Sbjct: 48 --ILDLGAGTGLLSAFLMEKYPEATFTLVDMS-EKML--EIAKNRFRGNLKVKYIE---A 99
Query: 1486 DIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
D + E D++VS H L + + LK G+ +
Sbjct: 100 DYSKYDFE-EKYDMVVSALSIHHLEDEDKKELYKRSY-SILKESGIFI 145
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A*
3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 38.0 bits (89), Expect = 0.020
Identities = 25/150 (16%), Positives = 43/150 (28%), Gaps = 34/150 (22%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVIT--------QLTQEVVEENDCSDVITVIC 1481
+L++GCG G E + D +VI ++V+ D + V+
Sbjct: 94 LLDIGCGWGTTMRRAVE---RF----DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLL 146
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMG-HV--LYLDSLINAVVYARDRFLKPHGLIL----- 1533
+ ED E VD IVS H D + G +
Sbjct: 147 QGWEDFA------EPVDRIVSIEAFEHFGHENYDDFFKRC----FNIMPADGRMTVQSSV 196
Query: 1534 -PDRAELYCVAANDTMAATKYSFWHDVYGF 1562
E+ + ++ + F
Sbjct: 197 SYHPYEMAARGKKLSFETARFIKFIVTEIF 226
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI,
NEW YORK SGX research center for structural genomics,
nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB:
2glu_A*
Length = 239
Score = 37.5 bits (87), Expect = 0.022
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVE-------ENDCSDVITVICR 1482
VL++G G G +L + I VD T+E+VE E +V
Sbjct: 25 VLDIGAGAGHTALAFSPYVQ-ECIGVD------ATKEMVEVASSFAQEKGVENVRFQQG- 76
Query: 1483 RMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+ LP ++ DII + H + + AV R LK G L
Sbjct: 77 ---TAESLPFPDDSFDIITCRYAAH--HFSDVRKAVREVA-RVLKQDGRFL 121
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A
2bpr_A 1dg4_A
Length = 219
Score = 37.2 bits (87), Expect = 0.023
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 27/95 (28%)
Query: 1034 KKTNKQQNIQI-----LSPAK--------KPNKEEDKIEKEE----NNTNA--------- 1067
K + K+Q I I L+ + + N E D+ +E N +
Sbjct: 103 KNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV 162
Query: 1068 KENDEKSTDDEKNKLDDKAKDTATKL-SNSADSIK 1101
+E +K D+K ++ T L +I+
Sbjct: 163 EEAGDKLPADDKTAIESALTALETALKGEDKAAIE 197
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 37.3 bits (87), Expect = 0.028
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISV--DCSVITQLTQEVVEENDCSDVITV 1479
+ L +VLEVG G G +++ E AK V++ D ++ +L + V+ + + V
Sbjct: 24 AALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAEL-HKRVQGTPVASKLQV 81
Query: 1480 ICRRMEDIDRLPHGIENVDIIVSN 1503
+ D L + D V+N
Sbjct: 82 LVG-----DVLKTDLPFFDTCVAN 100
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 36.8 bits (85), Expect = 0.033
Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 30/213 (14%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVIC 1481
+ + VL++GCG G C E G + I VD + +++++ C V+
Sbjct: 37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE-SIGVDIN------EDMIKF--CEGKFNVVK 87
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMGHVL---YLDSLINAVVYARDRFLKPHGLIL---PD 1535
+ + +D ++ + H + + L + +K I+ P+
Sbjct: 88 SDAIE-YLKSLPDKYLDGVM---ISHFVEHLDPERLFELLSLCY-SKMKYSSYIVIESPN 142
Query: 1536 RAELYCVAANDTMAATKYSFWH--------DVYGFDMEPIQRDLPNIAKFHPVPGDKVMT 1587
LY N + T H + GF I+ D
Sbjct: 143 PTSLYS-LINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEELTKLAKIDSNTV 201
Query: 1588 DSILIHSIDLNTCSVDDTSF-NLEFAMVAKEGG 1619
+I I+ N ++ F ++A++AK+ G
Sbjct: 202 SEEVIRVINENIEKLNRILFGPQDYAIIAKKEG 234
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 37.6 bits (88), Expect = 0.036
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 19/101 (18%)
Query: 1015 DKNVSKDQKITKSTNNNLNKKTNKQQNIQILSPAKKPNKEEDKIEKEE----NNTNA--- 1067
DKN K+QKIT ++ LN+ IQ + + N E D+ E N +
Sbjct: 490 DKNSGKEQKITIKASSGLNE-----DEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLH 544
Query: 1068 ------KENDEKSTDDEKNKLDDKAKDTATKL-SNSADSIK 1101
+E +K D+K ++ T L +I+
Sbjct: 545 STRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIE 585
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 36.2 bits (84), Expect = 0.050
Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 18/118 (15%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAK--HVISVDCSVITQ----LTQEVVEENDCSDV 1476
L + VL+VG G G + ++ + V ++D + + E V + +V
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID---VQEEMVNYAWEKVNKLGLKNV 90
Query: 1477 ITVICRRMEDIDRLPHGIENVDIIVSNWMGH-VLYLDSLINAVVYARDRFLKPHGLIL 1533
+ + +++P VD I + H + + + R KP +
Sbjct: 91 EVLKS----EENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELK----RVAKPFAYLA 140
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 37.2 bits (85), Expect = 0.053
Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 6/170 (3%)
Query: 960 NKNFKNFNNKSYGDKNKNEFKVTKIMQRPVDENKDEIAKLPIPLGGDKKDDKKVDDKNVS 1019
NFN K+ + K Q+ D K + + +KK + K +KN
Sbjct: 590 AGKALNFNKAVAEAKSTGNYDEVKKAQK--DLEKSLRKREHLEKEVEKKLESKSGNKNKM 647
Query: 1020 KDQKITKSTNNNLNKKTNKQQNIQILSPAKKPNKEEDKIE---KEENNTNAKENDEKSTD 1076
+ + S + + NK+ N + A N + K E K E + ++ KS D
Sbjct: 648 EAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFD 707
Query: 1077 DEKNKLDDKAKDTATKLSNSADSIKLNKKDEGSKENKPQQQRRKFNNFHN 1126
+ KN + L S+K + +K + N F N
Sbjct: 708 EFKNGKNKDFSKAEETLKALKGSVK-DLGINPEWISKVENLNAALNEFKN 756
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed
alpha beta fold, structural genomics, PSI; HET: SAH 16A;
2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 36.8 bits (86), Expect = 0.053
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 34/150 (22%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSV--IT------QLTQEVVEENDCSDVITVIC 1481
+L+VGCG G + E K+ D +V +T Q++V ++ V+
Sbjct: 68 LLDVGCGWGATMMRAVE---KY----DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLL 120
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMG-HV--LYLDSLINAVVYARDRFLKPHGLIL----- 1533
E D E VD IVS H D+ + R L G++L
Sbjct: 121 AGWEQFD------EPVDRIVSIGAFEHFGHERYDAFFSLA----HRLLPADGVMLLHTIT 170
Query: 1534 -PDRAELYCVAANDTMAATKYSFWHDVYGF 1562
E++ + ++ + F
Sbjct: 171 GLHPKEIHERGLPMSFTFARFLKFIVTEIF 200
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 37.0 bits (86), Expect = 0.056
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 16/156 (10%)
Query: 780 PHYQHNSGYSRHLSYEDKDLAKPPVPHTSGNIY-------------VNHNKYEPQYIPPT 826
P + + +L+ ++ +L P + + N ++ +
Sbjct: 14 PDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLESTLAE 73
Query: 827 VLPSSEKSRKPISHVSPPVVTSIITSTATSNVTTTTSSSETKPAESDNKLPSNNNPSEEG 886
+ + +K + P ++ ++ +T + + ++ P D + EE
Sbjct: 74 LKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESEGERNGEEA 133
Query: 887 ED--VSGRKNAKVVPGSPAKSNNMSQHY-NEKGHKS 919
D R VP P K +++S + H S
Sbjct: 134 NDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHLS 169
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 36.2 bits (84), Expect = 0.072
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAK-HVISVDCSVITQLTQEVVEENDCSDVITVICRRM-EDI 1487
+L++G G + C + + V VD ++ ++ S+ I + +
Sbjct: 183 LLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD 242
Query: 1488 DRLPHGIENVDIIVSNWMGHVLY 1510
P G D + WM L
Sbjct: 243 VPFPTG---FDAV---WMSQFLD 259
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative,
structural genomics, methyltransferase fold, PSI; 1.60A
{Bacillus subtilis} SCOP: c.66.1.20
Length = 240
Score = 35.8 bits (83), Expect = 0.076
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 1426 KDKIVLEVGCGMGL----LSLFCAEAGAKHVISVD-----CSVITQLTQEVVEENDCSDV 1476
+ + +VG G G + + HV VD + + +++ E +
Sbjct: 70 QVNTICDVGAGAGFPSLPIKICFPH---LHVTIVDSLNKRITFL----EKLSEALQLENT 122
Query: 1477 ITVICRRMEDIDRLPHGIENVDIIVS 1502
T R E + E+ DI+ +
Sbjct: 123 -TFCHDRAETFGQRKDVRESYDIVTA 147
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 36.2 bits (83), Expect = 0.080
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
+ + VL++GCG G L AG VD +
Sbjct: 59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIA 96
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase,
caries, structural genomics, unknown function; 2.00A
{Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB:
3ldf_A*
Length = 385
Score = 36.1 bits (84), Expect = 0.087
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEEN 1471
K VL + S+ A GA SVD + + ++ + +
Sbjct: 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLA---KRSRALSLAH 254
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM PF05175;
HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 35.2 bits (81), Expect = 0.13
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 1430 VLEVGCGMGLLSLFCA-EAGAKHVISVDCS----VITQLTQEVVEENDCSDVITVICR-- 1482
+ ++G G G + A V + S + + E+ + S I V+
Sbjct: 40 IADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99
Query: 1483 RMEDIDRLPHGIEN--VDIIVSN 1503
+ R+ G+ + ++ N
Sbjct: 100 TLRAKARVEAGLPDEHFHHVIMN 122
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 35.6 bits (81), Expect = 0.17
Identities = 27/291 (9%), Positives = 56/291 (19%), Gaps = 16/291 (5%)
Query: 549 APMIPMDSYMTNYMQPGPPPQSTSDYKMLYWNNVPMPNMLHAPPPQAPHSA-MYKYTSHI 607
+M P P + Y + + P +++
Sbjct: 17 GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76
Query: 608 PYDMPTSQATQKPFMKLNDSTSGTDTSAYISPTHMRVHTHQIPAHRYPVENTTTNKMPLA 667
M P + N +P + PA+ P N P+
Sbjct: 77 TTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMN 136
Query: 668 YTEP-QPPNLQASLNDYQRYQNERHHFTDFGNFQTPPLGNSVQHNYQ--TNDSFGTNDLS 724
P L N+ + N + L
Sbjct: 137 QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLL 196
Query: 725 TRIHQQPTAVHPYFNSTDENSAQRYGIPDVSVHSSRNKRAITGGTNHL------------ 772
+ V + ++ D + R R+
Sbjct: 197 KKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFC 256
Query: 773 QHLNSRTPHYQHNSGYSRHLSYEDKDLAKPPVPHTSGNIYVNHNKYEPQYI 823
+ N + Y+ ++ + + + Y Y
Sbjct: 257 RLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYC 307
Score = 30.6 bits (68), Expect = 6.7
Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 26/237 (10%)
Query: 394 PSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQ--------ASSLSNSNTTGYSSQNL 445
P Q + P Q Q S+ + + L
Sbjct: 10 PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69
Query: 446 YQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKYPPYNVDMKNHLDSKSTLETKSS 505
+QQ + + ++ +++ + ++ + P +
Sbjct: 70 HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ---------------QQQ 114
Query: 506 SEHPPYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQPG 565
P P+ Q + + D + T P P+ + P
Sbjct: 115 PMAAPAYGQPSAAMGQNMRPMNQLYPI--DLLTELPPPITDLTLPPPPLVIPPERMLVPS 172
Query: 566 PPPQSTSDYKMLYWNNVPMPNMLHAPPPQAPHSAMYKYTSHIPYDMPTSQATQKPFM 622
++ DY N VP + L + P + + H+ D+ + +
Sbjct: 173 ELSNASPDYIRSTLNAVPKNSSLLK-KSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.8 bits (80), Expect = 0.19
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
++L +D +L++GCG G +SL A G V +D +
Sbjct: 26 NYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDIN 61
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 34.7 bits (79), Expect = 0.19
Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 18/139 (12%)
Query: 1409 INNSHLFKVRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVI-------- 1460
+ L + + +L +G G G + L V +
Sbjct: 35 FMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQ 94
Query: 1461 TQLTQEVVEENDCSDVITVICRRM-----EDIDRLPHGIENVDIIVSNWMGHVLY-LDSL 1514
+E+V + + + + + ++ D I M +LY + +
Sbjct: 95 IAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFI---HMIQMLYYVKDI 151
Query: 1515 INAVVYARDRFLKPHGLIL 1533
+ + L + +L
Sbjct: 152 PATLKFFH-SLLGTNAKML 169
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 34.6 bits (79), Expect = 0.22
Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 41/177 (23%)
Query: 1387 DIKTHQTTYKDKQLIGCFHDSIINNS--HLFKVRKPNSHLLKDKI--------------- 1429
D T K +++IG I + H FK+ +P DK+
Sbjct: 26 DFHTDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALI 85
Query: 1430 -----------VLEVGCGMGLLSLFCAEAGAK--HVISVDCSVITQLTQEVVEENDCSDV 1476
++E G G G L+LF A V+S + I + ++ EN
Sbjct: 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYE---IREDFAKLAWENIKWAG 142
Query: 1477 ITVICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
ENVD ++ + ++ A LKP G +
Sbjct: 143 FDDRVTIKLKDIYEGIEEENVDHVILDLPQPERVVEHAAKA--------LKPGGFFV 191
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 34.9 bits (81), Expect = 0.24
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 1422 SHLLKDKIVLEVGCG-MGLLSLFCAEA-GAKHVISVD 1456
+ ++K V+ +G G +GLL++ CA A GAK V ++D
Sbjct: 156 AQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 34.4 bits (79), Expect = 0.27
Identities = 16/108 (14%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEENDCSDVITVICRRM 1484
+ +V+++ G+G S+ A AK + ++D + +L ++ ++ N I I +
Sbjct: 195 LNDVVVDMFAGVGPFSI--ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV 252
Query: 1485 EDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLI 1532
++ + ++ N + A ++ G+I
Sbjct: 253 REV------DVKGNRVIMN------LPKFAHKFIDKAL-DIVEEGGVI 287
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 34.9 bits (80), Expect = 0.27
Identities = 15/166 (9%), Positives = 31/166 (18%), Gaps = 4/166 (2%)
Query: 639 PTHMRVHTHQIPAHRYPVENTTTNKMPLAYTEPQPPNLQASLNDYQRYQNERHHFTDFGN 698
V + R+P T + +P E L G
Sbjct: 209 AYFGLVRSFLAIRDRFPAATTQLSLLPAPPPEASG--RALLLRAIVARNFGCSLLIAGGE 266
Query: 699 FQTPPLGNSVQHNYQTNDSFGTNDLSTRIHQQPTAVHPYFNSTDENSAQRYGIPDVSVHS 758
Q + N ++ R + + Y + +
Sbjct: 267 HQPDGGDCRRGEDLTQNR--VDPSVAERAEKIGVRLIAYPRMVYVEDRAEHLPEAEAPQG 324
Query: 759 SRNKRAITGGTNHLQHLNSRTPHYQHNSGYSRHLSYEDKDLAKPPV 804
+R + P + L + +
Sbjct: 325 ARLLTLSGEEFQRRMRAGLKIPEWYSFPEVLAELHRQTPPRERQGF 370
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.8 bits (79), Expect = 0.29
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 1044 ILSPAKKPNKEEDKIEKEENNTNAKENDEKSTDDEKNKLDDKAKDTATKLSNSADSIKLN 1103
+LS + K +KE+ ++ E +++ + + K + K +
Sbjct: 814 VLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYS 873
Query: 1104 KKDEGSKEN----KPQQQRRKFNNFHNSSKYQ-RHPYHNNGG 1140
K +N PQQ ++ +F ++ + N G
Sbjct: 874 SKPY-KVDNMTRILPQQS--RYISFIKDDRFVPVRKFKGNNG 912
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 34.3 bits (79), Expect = 0.30
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 36/127 (28%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAK-HVISVDCSVI-TQLTQEVVEENDCSDVITVICRRMEDI 1487
VL+VGCG G+LS+ A K + D S + ++ + N + ++
Sbjct: 200 VLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEV-FASNVFSEV 258
Query: 1488 DRLPHGIENVDIIVSN-----------WMGHVLYLDSLINAVVYARDRFLKPHGLILPDR 1536
D+I+SN L ++ R L G
Sbjct: 259 K------GRFDMIISNPPFHDGMQTSLDAAQTLIRGAV---------RHLNSGG------ 297
Query: 1537 AELYCVA 1543
EL VA
Sbjct: 298 -ELRIVA 303
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 33.9 bits (78), Expect = 0.39
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 30/119 (25%)
Query: 1407 SIINNSHLFKVRKPNS----HLLKDK----------------IVLEVGCGMGLLSLFCAE 1446
S ++ H R+ HLLK+ IVLE+GCG G L++
Sbjct: 3 SSHHHHHHSSGRENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLP 62
Query: 1447 AGAKHVISV--DCSVITQLTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVSN 1503
AK VI++ D +I+++ + + E + + V D + D+ +N
Sbjct: 63 L-AKKVITIDIDSRMISEVKKRCLYEGY--NNLEVY---EGDA--IKTVFPKFDVCTAN 113
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 33.2 bits (75), Expect = 0.53
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 11/115 (9%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKH-VISVDCS------VITQLTQEVVEENDCSDVIT 1478
D++ +++G G G A I +D + ++ ++ + +
Sbjct: 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG--LSNVV 81
Query: 1479 VICRRMEDIDRLPHGI-ENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLI 1532
+ E + I +++ I+ W + Y+ ++ K
Sbjct: 82 FVIAAAESLPFELKNIADSISILFP-WGTLLEYVIKPNRDILSNVADLAKKEAHF 135
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 33.3 bits (77), Expect = 0.57
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1425 LKDKIVLEVGCG-MGLLSLFCAEA-GAKHVISVD 1456
+ K VL G G +GLL + A+A GA VI +
Sbjct: 166 ISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSE 199
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine,
protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP:
c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 32.9 bits (76), Expect = 0.65
Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 22/91 (24%)
Query: 1422 SHLLKDKIVLEVGCGMG----LLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVI 1477
L + L+VG G G + G VI +D I +L + V
Sbjct: 73 DQLHEGAKALDVGSGSGILTACFARMVGCTG--KVIGID--HIKELVDDSVN-------- 120
Query: 1478 TVICRRMEDIDRLPHGIENVDIIVSN-WMGH 1507
+ D V ++V + MG+
Sbjct: 121 -----NVRKDDPTLLSSGRVQLVVGDGRMGY 146
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A*
Length = 302
Score = 33.3 bits (77), Expect = 0.66
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 33/153 (21%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSV--IT------QLTQEVVEENDCSDVITVIC 1481
+L++GCG G ++ D +V +T + + +E D V
Sbjct: 76 LLDIGCGWGSTMRHAVA---EY----DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 128
Query: 1482 RRMEDIDRLPHGIENVDIIVSNWMG-HVLYLDSLI---NAVVYAR--DRFLKPHGLIL-- 1533
+ E+ D E VD IVS H + + G +L
Sbjct: 129 QGWEEFD------EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLH 182
Query: 1534 ----PDRAELYCVAANDTMAATKYSFWHDVYGF 1562
PD+ E + M+ ++ + F
Sbjct: 183 TITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 33.5 bits (77), Expect = 0.66
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 1425 LKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEEN 1471
+ + L+V G +L G + V++VD S EEN
Sbjct: 208 FRGERALDVFSYAGGFAL-HLALGFREVVAVDSS---AEALRRAEEN 250
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled
post-transcriptional, gene regulation, chaperone; HET:
EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 33.2 bits (75), Expect = 0.68
Identities = 13/138 (9%), Positives = 47/138 (34%), Gaps = 12/138 (8%)
Query: 989 VDENKDEIAKLPIPLGGDKKDDKKVDDKNVSKDQKITKSTNNNLNKKTNKQQNIQILSPA 1048
+D+ ++ + +++ + + +Q + + TN + K I
Sbjct: 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTL-QDTNAKIASIQKKMSEI------ 86
Query: 1049 KKPNKEEDKIEKE----ENNTNAKENDEKSTDDEKNKLDDKAKDTATKLSNSADSIKLNK 1104
K +E + E + +N + ++ +E + +K +D ++ +
Sbjct: 87 -KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145
Query: 1105 KDEGSKENKPQQQRRKFN 1122
++ ++ ++
Sbjct: 146 SLVENEVKNIKETQQIIF 163
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP:
c.66.1.7 d.197.1.1
Length = 317
Score = 33.2 bits (76), Expect = 0.72
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 1430 VLEVGCGMG----LLSLFCAEAGAKHVISVD 1456
VLE+G G G ++S E G V+SV+
Sbjct: 79 VLEIGGGTGYNAAVMSRVVGEKG--LVVSVE 107
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics,
NPPSFA, national PR protein structural and functional
analyses; HET: SAH; 2.60A {Thermus thermophilus}
Length = 211
Score = 32.5 bits (74), Expect = 0.74
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
+LEVG G G + V+ S
Sbjct: 40 LLEVGAGTGYWL---RRLPYPQKVGVEPS 65
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 32.1 bits (73), Expect = 0.79
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
L+ KIVL++G G+++ + V+S D +
Sbjct: 19 REGLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLN 53
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
universal joint, bacterial flagellum, motor protein;
7.10A {Salmonella enterica subsp}
Length = 402
Score = 33.0 bits (75), Expect = 0.81
Identities = 24/205 (11%), Positives = 54/205 (26%), Gaps = 5/205 (2%)
Query: 237 NNITNKTRERLMNKPASSNDSLLKDNGDVDSRTTTASILDSSLYQNTYDSKTRNFVDSGS 296
N+ N +L PA+ ++ + T +++ + N D
Sbjct: 105 RNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNSTDPVP 164
Query: 297 QIFNAASTLNETPEHSTRDGKLFSNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNV 356
+ + ++ S + + + + + A
Sbjct: 165 SKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDPAATAPTT 224
Query: 357 ASNGGGSNNGGVYST----NSFMAATTHGYSSISNTITNTQPSQQQSNNSVYSSTINSYS 412
AS N G+ + N ++ + Q N++ ++ N Y
Sbjct: 225 ASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNIVATNQNGY- 283
Query: 413 SFPQQSSVNLNTYGHQASSLSNSNT 437
S +N G + SN
Sbjct: 284 KPGDLVSYQINNDGTVVGNYSNEQE 308
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 32.9 bits (74), Expect = 0.81
Identities = 13/127 (10%), Positives = 35/127 (27%), Gaps = 8/127 (6%)
Query: 1364 PIRTFNMDIDDMTSREIFEDVYADIKT---HQTTYKDKQLIGCFHDSIINNSHLFKVRKP 1420
D + Y + + Y + C + + +
Sbjct: 6 RSPNAGAAPDSAPGQAAVASAYQRFEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTF 65
Query: 1421 NSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSV--ITQLTQEVVEENDCSD--- 1475
+ + + ++++G G + L A + + + D +L + + EE +
Sbjct: 66 ATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSM 125
Query: 1476 VITVICR 1482
C
Sbjct: 126 YSQHACL 132
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 32.7 bits (74), Expect = 0.84
Identities = 9/60 (15%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 1430 VLEVGCGMGLLSLFCAEA--GAKHVISVD-CSVITQLTQEVVEENDCSDVITVICRRMED 1486
+++ G G G + A A + V + + +L + + + + +T+ R + +
Sbjct: 116 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 175
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural
genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP:
c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A*
1khh_A*
Length = 236
Score = 32.6 bits (73), Expect = 0.87
Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 24/164 (14%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDC--SVITQLTQEVVEENDCSDVITVICRR 1483
K VLEVG GM + + EA ++C V +L + + +
Sbjct: 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHK---VIPLKGL 116
Query: 1484 MED-IDRLPHGIENVDIIV------SNWMGHVLYLDSLINAVVYARDRFLKPHGL----- 1531
ED LP G + D I+ S H + + N R LKP G+
Sbjct: 117 WEDVAPTLPDG--HFDGILYDTYPLSEETWHTHQFNFIKNHAF----RLLKPGGVLTYCN 170
Query: 1532 ILPDRAELYCVAANDTMAATKYSFWHDV-YGFDMEPIQRDLPNI 1574
+ + ++ T+ + + GF E I+ ++ +
Sbjct: 171 LTSWGELMKSKYSDITIMFEETQVPALLEAGFRRENIRTEVMAL 214
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 32.1 bits (74), Expect = 0.93
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 1430 VLEVGCGMG----LLSLFCAEAGAKHVISVD 1456
VLE+G G G + + E G V+S++
Sbjct: 81 VLEIGTGCGYHAAVTAEIVGEDG--LVVSIE 109
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 32.5 bits (75), Expect = 0.94
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 1423 HLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISV 1455
++ + V+EVG G G L+ + K + +
Sbjct: 28 NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVI 60
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 1.1
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 10/32 (31%)
Query: 317 KLFSNEALYAPSSTTNYPYSSSSTPTYAAMTT 348
KL ++ LYA S P A T
Sbjct: 24 KLQASLKLYAD----------DSAPALAIKAT 45
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase,
thermoplasma acidoph midwest center for structural
genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP:
c.66.1.13
Length = 275
Score = 32.4 bits (73), Expect = 1.2
Identities = 21/174 (12%), Positives = 46/174 (26%), Gaps = 43/174 (24%)
Query: 1390 THQTTYKDKQLIGC--FHDSIINNSHLFKVRKPNSHLL-------------KD------- 1427
+ + D +I + F V + D
Sbjct: 46 LVKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMR 105
Query: 1428 ------KIVLEVGCGMGLLSLFCAEAGAK--HVISVDCSVITQLTQEVVEEN-DCSDVIT 1478
+LEVG G G +S + A + V+ + + +N I
Sbjct: 106 CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVE---RDEDNLKKAMDNLSEFYDIG 162
Query: 1479 VICRRMEDIDRLPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLI 1532
+ DI + D ++++ ++ + + +KP +
Sbjct: 163 NVRTSRSDIADF-ISDQMYDAVIADIPDPWNHVQKIASM--------MKPGSVA 207
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli}
SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 31.8 bits (73), Expect = 1.4
Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 27/95 (28%)
Query: 1034 KKTNKQQNIQI-----LSPAK--------KPNKEEDKIEKEE----NNTNA--------- 1067
K T + +IQ+ L+ ++ E+D +
Sbjct: 100 KSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL 159
Query: 1068 KENDEKSTDDEKNKLDDKAKDTATKL-SNSADSIK 1101
+ + E+ +DD A + + D+I+
Sbjct: 160 AADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIE 194
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 31.9 bits (72), Expect = 1.4
Identities = 26/164 (15%), Positives = 50/164 (30%), Gaps = 34/164 (20%)
Query: 1378 REIFEDVY--ADIKTHQTTYKDKQLIGCFHDSIINNSHLF------KVRKPNSHLLKDKI 1429
R + E +Y + +D + +H + + ++ + +
Sbjct: 11 RYLNEQLYSGPSSAAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLV 70
Query: 1430 VLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEENDCSDVITVICRRMEDIDR 1489
V + GCG L+ V D D +C D+ +
Sbjct: 71 VADFGCGDCRLASSIRN----PVHCFDL--------------ASLDPRVTVC----DMAQ 108
Query: 1490 LPHGIENVDIIVSNWMGHVLYLDSLINAVVYARDRFLKPHGLIL 1533
+P E+VD+ V + + +R LKP GL+
Sbjct: 109 VPLEDESVDVAVFCLSLMGTNIRDFLEEA----NRVLKPGGLLK 148
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 32.2 bits (72), Expect = 1.6
Identities = 22/162 (13%), Positives = 45/162 (27%)
Query: 320 SNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATT 379
S + S + ST ++ +G G + G +++ S +T
Sbjct: 266 SPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGST 325
Query: 380 HGYSSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTG 439
+ S +T S+ + S SS + + G S
Sbjct: 326 GNQNPGSPRPGSTGTWNPGSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNAR 385
Query: 440 YSSQNLYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSH 481
++ + + S + S + T +S T
Sbjct: 386 PNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRTGK 427
Score = 30.6 bits (68), Expect = 5.2
Identities = 23/157 (14%), Positives = 48/157 (30%), Gaps = 2/157 (1%)
Query: 327 PSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNG--GVYSTNSFMAATTHGYSS 384
S+ P SS + T +SG + + N G S G G + S +T ++
Sbjct: 284 GSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQNPGSPRPGSTGTWNP 343
Query: 385 ISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQN 444
S+ + +S+ S + +S S + S +
Sbjct: 344 GSSERGSAGHWTSESSVSGSTGQWHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSP 403
Query: 445 LYQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSH 481
+++ + ++ + ST+ T
Sbjct: 404 GTRREYHTEKLVTSKGDKELRTGKEKVTSGSTTTTRR 440
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 32.3 bits (74), Expect = 1.6
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 30/114 (26%)
Query: 1017 NVSKDQKITKSTNNNLNKKTNKQQNIQI------LSPAKKPN--------KEEDKIEKE- 1061
+ + I + + KT K+ ++ I L K +DK+ E
Sbjct: 491 TIEEAYTIEDIEAGS-DTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAET 549
Query: 1062 -------EN------NTNAKENDEKSTDDEKNKLDDKAKDTATKL-SNSADSIK 1101
E +E ++D EK KL L DSIK
Sbjct: 550 EDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIK 603
>3tix_B Chromo domain-containing protein 1; PIN, rossmann fold, SPOC,
alpha-helical hairpin, heterochrom silencing, RITS,
RNAI, argonaute; 2.90A {Schizosaccharomyces pombe}
Length = 458
Score = 32.0 bits (72), Expect = 1.8
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 234 LDVNNITNKTRERLMNKPASSNDSLLKDNGDVDSRTTTASILDS-SLYQNTYDSKTRNFV 292
L++ N+ N T +R + PA N +L +D V + S+ + LYQ K R FV
Sbjct: 366 LEIQNLLN-TLQRYLTNPALKNVTLYQDWDIVIDDSADVSLASTLQLYQKKNYDKYRRFV 424
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA processing,
methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia
virus}
Length = 302
Score = 31.7 bits (71), Expect = 1.9
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 1417 VRKPNSHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
K + VL + G G +++ D
Sbjct: 39 CSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPD 80
>3nio_A Guanidinobutyrase; PA1421, GBUA, hydrolase; HET: MLY; 2.00A
{Pseudomonas aeruginosa}
Length = 319
Score = 31.5 bits (72), Expect = 1.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
+D D IDP + PG+GTP GG
Sbjct: 242 FDIDGIDPA--WAPGTGTPEI--GG 262
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 32.2 bits (74), Expect = 2.0
Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 12/75 (16%)
Query: 499 TLETKSSSEHPPYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYM 558
+ + D P + ++ D+ A + D+ M Y
Sbjct: 441 HILSSDPYLWQFAND-PKFFLNEF------DLLGQAAAS-----KLARDLTSQGAMKEYF 488
Query: 559 TNYMQPGPPPQSTSD 573
PG +
Sbjct: 489 AGETLPGYNLVQNAT 503
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.4 bits (70), Expect = 2.0
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 1046 SPAKKPNKEEDKIEK--EENNTNAKENDEKSTDDEKNKLDDKAKDTATK-LSNSADSIKL 1102
+ A + +E + I K EE +E D S + + +KAK + ++ ++
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEK 148
Query: 1103 NKKDEGSKENKPQQQR 1118
NK + + QQ
Sbjct: 149 NKINNRIADKAFYQQP 164
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc
structural genomics, NEW YORK SGX research center for
struc genomics; 2.30A {Clostridium difficile}
Length = 287
Score = 31.3 bits (72), Expect = 2.2
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
D D +D FPG+GTP P GG
Sbjct: 201 IDLDVLDA--SVFPGTGTPEP--GG 221
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 31.4 bits (72), Expect = 2.2
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
D D IDP + P GTP P G
Sbjct: 228 VDMDGIDP--AYAPAVGTPEP--FG 248
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase,
antibioti; 1.75A {Streptomyces clavuligerus} SCOP:
c.42.1.1 PDB: 1gq7_A
Length = 313
Score = 31.4 bits (72), Expect = 2.4
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
D D +DP F PG+GTP P GG
Sbjct: 234 VDIDVVDPA--FAPGTGTPAP--GG 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG,
PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 31.3 bits (72), Expect = 2.4
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 18/111 (16%)
Query: 1015 DKNVSKDQKITKSTNNNLNKKTNKQQN------IQILSPAKKP------NKEEDKIEKEE 1062
+K++ +KIT N L K K++ Q L+ K+P + E +I
Sbjct: 160 EKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSL 219
Query: 1063 NNTNAKE-----N-DEKSTDDEKNKLDDKAKDTATKLSNSADSIKLNKKDE 1107
AK N E+ +KNK K K + S I ++ E
Sbjct: 220 YLLTAKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFE 270
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics, MCSG;
HET: CAC; 2.20A {Bacillus subtilis}
Length = 322
Score = 31.4 bits (72), Expect = 2.6
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
D D +D PG P GG
Sbjct: 244 VDMDVLDQS--HAPGCPAIGP--GG 264
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 31.5 bits (71), Expect = 2.6
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 769 TNHLQHLNSRTPHYQHNSGYSRHLSYEDKDLAKPPVPHTSGNIYVNHNKYEPQYIPPTVL 828
++ +Q+++S + N Y+ P+ T H +
Sbjct: 21 SSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP----PHGSLQGYQTYGHFP 76
Query: 829 PSSEKSRKPISHVSPPVVTSIITSTATSNVTTTTSSSE 866
+ KS P + S P + + ++ S
Sbjct: 77 SRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPH 114
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 30.7 bits (70), Expect = 2.6
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 15/67 (22%)
Query: 1034 KKTNKQQNIQILSPAKKPNKEEDKIEKEENNTNAKENDEKSTDDEKNKLDDKAKDTATKL 1093
K T ++Q I I S + + + K + EK +D+ K +
Sbjct: 122 KGTGREQQIVIQSSGGLSKDDIENMVK---------------NAEKYAEEDRRKKERVEA 166
Query: 1094 SNSADSI 1100
N A+ I
Sbjct: 167 VNMAEGI 173
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 31.1 bits (71), Expect = 2.9
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 1426 KDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS-VITQLTQEVVEEND------CSDVIT 1478
+ VL+V +G +L A GA + ++VD + + + +
Sbjct: 214 PGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALP 272
Query: 1479 VICRRMED 1486
+ R +E
Sbjct: 273 TL-RGLEG 279
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 30.9 bits (71), Expect = 3.2
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 1430 VLEVGCGMG--LLSLFCAEAGAKHVISVDCSVIT-QLTQEVVEENDCSDVITVICRRMED 1486
V ++G G G +S+ A+ V + D S ++ ++ E + SD V +
Sbjct: 127 VADIGTGSGAIGVSV--AKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG---E 181
Query: 1487 I-DRLPHGIENVDIIVSN 1503
+ ++++I+SN
Sbjct: 182 FLEPFKEKFASIEMILSN 199
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 31.3 bits (70), Expect = 3.2
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 1405 HDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGM--GLLSLFCAEAGAKHVISVDCSVITQ 1462
H ++ H H+ K ++L +G G + A +V
Sbjct: 3 HHHHHHHHHHSSGHIEGRHMGK-NVLL-LGSGFVAQPVIDTLAANDDINVTVAC------ 54
Query: 1463 LTQEVVEENDCSDVITVICRRMEDIDRLPHGIENVDIIVS 1502
T + I + D L + + D+++S
Sbjct: 55 RTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVIS 94
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 31.1 bits (71), Expect = 3.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISV 1455
++L KD +VLE+G G G+L+ A+ AK V +
Sbjct: 46 ANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVI 78
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase,
isomerization, protein repair, S-adenosyl homocysteine;
HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Length = 227
Score = 30.7 bits (70), Expect = 3.6
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 1423 HLLKDKIVLEVGCGMG----LLSLFCAEAGAK---HVISVD 1456
HL +L+VG G G + G ++ ++
Sbjct: 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIE 121
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA,
pseudomon bacterial toxin, siras, antimicrobial protein;
2.20A {Pseudomonas SP} PDB: 3m7j_A*
Length = 276
Score = 30.8 bits (68), Expect = 3.7
Identities = 23/195 (11%), Positives = 45/195 (23%), Gaps = 16/195 (8%)
Query: 279 LYQNTYDSKTRNFVDSGSQIFNAASTLNETPEHSTRDGKLFSNEALYAPSSTTNYPYSSS 338
+ N N S + + L + + S+
Sbjct: 48 IQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSND 107
Query: 339 STPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSSISNTITNTQPSQQQ 398
+ GN V + + T + I + +
Sbjct: 108 QWNRTHLVLQDDGNI--------------VLVDSLALWNGTPAIPLVPGAIDSLLLAPGS 153
Query: 399 SNNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLYQQQ-PSSVSYSS 457
S Q NL YG ++ N+ T G + Q + V Y +
Sbjct: 154 ELVQGVVYG-AGASKLVFQGDGNLVAYGPNGAATWNAGTQGKGAVRAVFQGDGNLVVYGA 212
Query: 458 NSYVYPQTSIATSSN 472
+ V + ++
Sbjct: 213 GNAVLWHSHTGGHAS 227
>3a2s_X Outer membrane protein II; beta barrel, porin, neisseria mening
cell membrane, cell outer membrane, ION transport,
membrane transmembrane; HET: SUC LDA; 2.20A {Neisseria
meningitidis} PDB: 3a2r_X* 3a2t_X* 3a2u_X*
Length = 355
Score = 30.9 bits (70), Expect = 3.9
Identities = 13/169 (7%), Positives = 33/169 (19%), Gaps = 14/169 (8%)
Query: 325 YAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNGGVYSTNSFMAATTHGYSS 384
+ + T Y + F +
Sbjct: 110 NTVLKDSGDNV----NAWESGSNTEDVLGLGTIGRVESREISVRYDSPVFAGFSGSVQYV 165
Query: 385 ISNTITNTQPSQQQSNNSVYSSTINSYSS--FPQQSSVNLNTYGHQASSLSNSNTTGYSS 442
+ + + ++ Y + F Q + + Y + ++
Sbjct: 166 PRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADLNTDAERVAVNTANA 225
Query: 443 QNLYQQQPSSV--SYSSNS------YVYPQTSIATSSNVSSTSHTSHKY 483
+ Q V Y +N Y ++ H +
Sbjct: 226 HPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQTQV 274
Score = 29.7 bits (67), Expect = 7.3
Identities = 18/166 (10%), Positives = 44/166 (26%), Gaps = 27/166 (16%)
Query: 340 TPTYA-----AMTTASGNANNVASNGGGSNNGGVYSTN------SFMAATTHGYSSISNT 388
+P +A NAN+V ++ Y F ++ ++
Sbjct: 152 SPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFAKYADL 211
Query: 389 ITNTQPSQQQSNNSVYSSTIN------SYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSS 442
T+ + + N+ Y + SV + + + + +
Sbjct: 212 NTDAERVAVNTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAKNNEVGSIKGKKHEQ 271
Query: 443 QNL-----YQQQPSSVSYSSNSYVYPQTSIATSSNVSSTSHTSHKY 483
+ Y+ + S Y A + V ++ +
Sbjct: 272 TQVAATAAYRFGNVTPRVS-----YAHGFKAKVNGVKDANYQYDQV 312
>4dz4_A Agmatinase; hydrolase; 1.70A {Burkholderia thailandensis}
Length = 324
Score = 30.6 bits (70), Expect = 4.3
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 1172 YDFDFIDPRSCFFPGSGTPYPQYGG 1196
+D D +DP F PG+GTP GG
Sbjct: 245 FDIDCLDPA--FAPGTGTPVA--GG 265
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel,
LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus
agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Length = 230
Score = 30.3 bits (68), Expect = 4.4
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 1205 LYNSNNYNNNKSKQKKTDSTNNVDKKQDSTSTDERKKKATQKQQQ-SEEESKKTSNKKIK 1263
+ S++++++ S ++ K D + R + A + ++ I
Sbjct: 1 MRGSHHHHHHGSSHANINAFKEAVTKIDRVEINRRLELAYAYNASIAGAKTNGEYPALIP 60
Query: 1264 FKGPEILNETTEPTAS 1279
G E A
Sbjct: 61 NTGAEQKQAGVVEYAR 76
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 31.0 bits (71), Expect = 4.5
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 509 PPYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQPGPPP 568
P VD P Y D++ I R +IA M + + PG
Sbjct: 398 KPMVD-PRYFTDPEG----HDMRVMVAGI-----RKAREIAAQPAMAEWTGRELSPGVEA 447
Query: 569 QS 570
Q+
Sbjct: 448 QT 449
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA
methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S,
iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB:
2vs1_A*
Length = 425
Score = 30.6 bits (70), Expect = 4.5
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 11/47 (23%)
Query: 1424 LLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCSVITQLTQEVVEE 1470
L++ + +L++ G+G ++ A+ +V + E
Sbjct: 288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGF----------DSNEF 323
>3pr7_A USPA1; beta-roll and coiled-coil, adhesin, extracellular, membrane;
2.94A {Moraxella catarrhalis}
Length = 311
Score = 30.4 bits (68), Expect = 5.1
Identities = 21/147 (14%), Positives = 49/147 (33%), Gaps = 8/147 (5%)
Query: 344 AAMTTASGNANNVASNGGGSNN--GGVYST--NSFMAATTHGYSSISNTITNTQPSQQQS 399
+ N ++ GGG NN G YST T S++ N + +
Sbjct: 77 IGGGGYNEATNQYSTIGGGDNNTAKGRYSTIGGGGYNEATIENSTVGGGGYNQAKGRNST 136
Query: 400 ----NNSVYSSTINSYSSFPQQSSVNLNTYGHQASSLSNSNTTGYSSQNLYQQQPSSVSY 455
N+ + T ++ + + + ++ + +N++ + +SV+
Sbjct: 137 VAGGYNNEATGTDSTIAGGRKNQATGKGSFAAGIDNKANADNAVALGNKNTIEGENSVAI 196
Query: 456 SSNSYVYPQTSIATSSNVSSTSHTSHK 482
SN+ V ++ + +
Sbjct: 197 GSNNTVKKGQQNVFILGSNTDTTNAQN 223
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 30.2 bits (67), Expect = 6.3
Identities = 27/145 (18%), Positives = 50/145 (34%), Gaps = 8/145 (5%)
Query: 1016 KNVSKDQKITKSTNNNLNKKTNKQQNIQILSPAKKPNKE-EDKIEKEENNTNAKENDEKS 1074
K+ K N NK + ++ KK K+ E + K E+ E +S
Sbjct: 320 KDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLES 379
Query: 1075 TDDEKNKLDDKAKDTATKLSNSADSIKLNKKDEGSKENKPQQQRRKFNNFHNSSKYQRHP 1134
KNK++ KA+ + K D I E +++ + + +
Sbjct: 380 KSGNKNKMEAKAQANSQK-----DEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEK 434
Query: 1135 YHNNGGDFN--YVPVYDGNINKFNK 1157
+ DF+ + +G F+K
Sbjct: 435 ISKDLKDFSKSFDEFKNGKNKDFSK 459
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A
{Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A
Length = 359
Score = 30.1 bits (67), Expect = 6.4
Identities = 28/185 (15%), Positives = 62/185 (33%), Gaps = 21/185 (11%)
Query: 710 HNYQTNDSFGTNDLSTRIHQQPTAVHPYFNSTDENSAQRYGIPDVSVHSSRNKRAITGGT 769
H L T + + + Y + + SA G +++ + +T
Sbjct: 168 HVTTARIGRQHYVLGTSADNRVSLTNNYIDGVSDYSATCDGYHYWAIYLDGDADLVTMKG 227
Query: 770 NHLQHLNSRTP-------------HYQHNSGYSRHLSYEDKDLAKPPVPHTSGNIYVN-H 815
N++ H + R+P ++ SG++ + LA GN++ N
Sbjct: 228 NYIYHTSGRSPKVQDNTLLHAVNNYWYDISGHAFEIGEGGYVLA-------EGNVFQNVD 280
Query: 816 NKYEPQYIPPTVLPSSEKSRKPISHVSPPVVTSIITSTATSNVTTTTSSSETKPAESDNK 875
E +PSS +++ V + S+ T + +T+ S+ + +
Sbjct: 281 TVLETYEGEAFTVPSSTAGEVCSTYLGRDCVINGFGSSGTFSEDSTSFLSDFEGKNIASA 340
Query: 876 LPSNN 880
+
Sbjct: 341 SAYTS 345
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 29.4 bits (65), Expect = 7.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 1422 SHLLKDKIVLEVGCGMGLLSLFCAEAGAKHVISVDCS 1458
+ +++LE G G ++ AE KHV SV+
Sbjct: 26 MAYEEAEVILEYGSGGS--TVVAAELPGKHVTSVESD 60
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 30.2 bits (69), Expect = 7.8
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 508 HPPYVDYPNYMGTQYQDSLMKDVKTAADPIGHFEFRNTLDIAPMIPMDSYMTNYMQPGPP 567
P ++ P Y+ T++ D+ T + ++ L ++ P
Sbjct: 434 DKPLIN-PQYLSTEF------DIFTMIQAV-----KSNLRFLSGQAWADFVIRPFDPRLR 481
Query: 568 PQSTSDY 574
+
Sbjct: 482 DPTDDAA 488
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative; HET: SAH; 2.00A {Shigella
flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Length = 258
Score = 29.3 bits (65), Expect = 8.8
Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 16/125 (12%)
Query: 1391 HQTTYKDKQLIGCFHDSIINNSHLFKVRKPNSHLLK--------DKIVLEVGCGMGLLSL 1442
+ I + K V++ G+G +
Sbjct: 45 RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRDAF 104
Query: 1443 FCAEAGAKHVISVDCS--VITQLTQEVVEENDCSDVITVICRRME-----DIDRLPHGIE 1495
A G + V ++ + V L + +++ + R++ + L
Sbjct: 105 VLASVGCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163
Query: 1496 NVDII 1500
++
Sbjct: 164 RPQVV 168
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.8 bits (66), Expect = 9.6
Identities = 32/301 (10%), Positives = 79/301 (26%), Gaps = 16/301 (5%)
Query: 187 KKHKRESSKVISVTNNQQVNNDKDFKNNLMWDGDSAGAKKSRNQWKNLDVNNITNKTRER 246
K+ R++ S N D K++ +N+ + R
Sbjct: 2 KRIPRKTKGKSSGKGNDSTERSDD-------GSSQLRDKQNNKAGPATTEPGTSNREQYR 54
Query: 247 LMNKPASSNDSLLKDNGDVDSRTTTASILDSSLYQNTYDSKTRNFVDSGSQIFNAASTLN 306
AS + + + + + + + ++ A +
Sbjct: 55 ARPGIASVQRATESAELPMKNNDEGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTD 114
Query: 307 ETPEHSTRDGKLFSNEALYAPSSTTNYPYSSSSTPTYAAMTTASGNANNVASNGGGSNNG 366
++ T +N + S + S+ P + A+ + G
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 367 GVYSTNSFMAATTHGYSSISNTITNTQPSQQQSNNSVYSSTINSYSSFPQQSSVNLNTYG 426
+ S + + S+ + T+ S + +
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAH-----VASHGLHGNMTLTSSEIQRHITEFISSWQN 229
Query: 427 HQASSLSNSNTTGYSSQNLYQQQPSSVSYSS---NSYVY-PQTSIATSSNVSSTSHTSHK 482
H +S ++Q L+ P V++ + S+ P +V + + +
Sbjct: 230 HPIVQVSADVENKKTAQLLHADTPRLVTWDAGLCTSFKIVPIVPAQVPQDVLAYTFFTSS 289
Query: 483 Y 483
Y
Sbjct: 290 Y 290
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 29.3 bits (66), Expect = 10.0
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 8/35 (22%)
Query: 1404 FHDSIINNSHLFKVRKPNSHLLKDKIVLEVGCGMG 1438
HD + + ++GCG G
Sbjct: 32 SHDDPKDKKEKRAQAQV--------EFADIGCGYG 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.126 0.363
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,252,459
Number of extensions: 1340627
Number of successful extensions: 2664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2501
Number of HSP's successfully gapped: 253
Length of query: 1662
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1555
Effective length of database: 3,714,246
Effective search space: 5775652530
Effective search space used: 5775652530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.1 bits)