BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17690
(545 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QLE|A Chain A, Structural Basis For The Function Of Tim50 In The
Mitochondrial Presequence Translocase
Length = 204
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 10/160 (6%)
Query: 123 TLLLEFRDLLVHPEWTYNTGWRFKKRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGL 182
TL++ D LVH EW+ GWR KRP D F L+ +E+V+F+S +
Sbjct: 36 TLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQ---------YYEIVLFSSNYMM 86
Query: 183 SIAPILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNR 242
I E LD + + + LF++ + DG H+ VI +D + +S
Sbjct: 87 YSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQP 146
Query: 243 ENALIIPRWNGNDDDRTLVDLAVFLRTIAVNGVDDVREVM 282
ENA+ + WNG DD+ LV L FL +A DVR ++
Sbjct: 147 ENAIPMEPWNGEADDK-LVRLIPFLEYLATQQTKDVRPIL 185
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 487 TLLLEFRDLLVHPEWTYNTGWRFKKRPFVDDFFETLNGSTTDRNNVPLFEVVIFTS 542
TL++ D LVH EW+ GWR KRP D F L+ +E+V+F+S
Sbjct: 36 TLVITLEDFLVHSEWSQKHGWRTAKRPGADYFLGYLSQ---------YYEIVLFSS 82
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 343 ILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENAL 402
I E LD + + + LF++ + DG H+ VI +D + +S ENA+
Sbjct: 91 IAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAI 150
Query: 403 IIPRWNGNDDDRTLVDLAVFL 423
+ WNG DD+ LV L FL
Sbjct: 151 PMEPWNGEADDK-LVRLIPFL 170
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 56 KRPHVDEFLQRMGE---------LFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 105
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ +D + S + +NA+ + W N D L DL F
Sbjct: 106 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 165
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 166 FEQLS--RVDDVYSVL 179
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++V V+ +D + S + +NA
Sbjct: 86 PVADLLDKWGA-FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNA 144
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRSPPQKDENGNII 436
+ + W N D L DL F + D+ +++
Sbjct: 145 VPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 179
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 56 KRPHVDEFLQRMGE---------LFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 105
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ +D + S + +NA+ + W N D L DL F
Sbjct: 106 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 165
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 166 FEQLS--RVDDVYSVL 179
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++V V+ +D + S + +NA
Sbjct: 86 PVADLLDKWGA-FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNA 144
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRSPPQKDENGNII 436
+ + W N D L DL F + D+ +++
Sbjct: 145 VPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 179
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 59 KRPHVDEFLQRMG---------ELFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 108
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ +D + S + +NA+ + W N D L DL F
Sbjct: 109 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 168
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 169 FEQLS--RVDDVYSVL 182
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++V V+ +D + S + +NA
Sbjct: 89 PVADLLDKWGA-FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNA 147
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRSPPQKDENGNII 436
+ + W N D L DL F + D+ +++
Sbjct: 148 VPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 182
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 55 KRPHVDEFLQRMGE---------LFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 104
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ +D + S + +NA+ + W N D L DL F
Sbjct: 105 CVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 164
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 165 FEQLS--RVDDVYSVL 178
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++V V+ +D + S + +NA
Sbjct: 85 PVADLLDKWGA-FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNA 143
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRSPPQKDENGNII 436
+ + W N D L DL F + D+ +++
Sbjct: 144 VPVASWFDNMSDTELHDLLPFFEQLSRVDDVYSVL 178
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LD+ F +LFR+S
Sbjct: 69 KRPHVDEFLQRMGQ---------LFECVLFTASLAKYADPVADLLDRWG-VFRARLFRES 118
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V VI VD + S + ENA+ + W + D L+DL F
Sbjct: 119 CVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPF 178
Query: 267 LRTIA 271
++
Sbjct: 179 FEGLS 183
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LD+ F +LFR+S F G++V VI VD + S + ENA
Sbjct: 99 PVADLLDRWG-VFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENA 157
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRSPPQKDENG 433
+ + W + D L+DL F ++D+ G
Sbjct: 158 VPVQSWFDDMTDTELLDLIPFFEGLSREDDEG 189
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 56 KRPHVDEFLQRXGE---------LFECVLFTASLAKYADPVADXLDKWGA-FRARLFRES 105
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ D + S + +NA+ + W N D L DL F
Sbjct: 106 CVFHRGNYVKDLSRLGRDLRRVLIXDNSPASYVFHPDNAVPVASWFDNXSDTELHDLLPF 165
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 166 FEQLS--RVDDVYSVL 179
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++V V+ D + S + +NA
Sbjct: 86 PVADXLDKWGA-FRARLFRESCVFHRGNYVKDLSRLGRDLRRVLIXDNSPASYVFHPDNA 144
Query: 402 LIIPRWNGNDDDRTLVDLAVF 422
+ + W N D L DL F
Sbjct: 145 VPVASWFDNXSDTELHDLLPF 165
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 59 KRPHVDEFLQRMG---------ELFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 108
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ + + S + +NA+ + W N D L DL F
Sbjct: 109 CVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 168
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 169 FEQLS--RVDDVYSVL 182
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP VD+F + + LFE V+FT+ P+ + LDK F +LFR+S
Sbjct: 59 KRPHVDEFLQRMG---------ELFECVLFTASLAKYADPVADLLDKWGA-FRARLFRES 108
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G++V V+ + + S + +NA+ + W N D L DL F
Sbjct: 109 CVFHRGNYVKDLSRLGRDLRRVLILANSPASYVFHPDNAVPVASWFDNMSDTELHDLLPF 168
Query: 267 LRTIAVNGVDDVREVM 282
++ VDDV V+
Sbjct: 169 FEQLS--RVDDVYSVL 182
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 12/132 (9%)
Query: 147 KRPFVDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDS 206
KRP+VD+F R LFE V+FT+ P+ + LD+ F +LFR+S
Sbjct: 58 KRPYVDEFL---------RRMGELFECVLFTASLAKYADPVTDLLDR-CGVFRARLFRES 107
Query: 207 TEFVDGHHVXXXXXXXXXXXXVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVF 266
F G +V + +D + S + ENA+ + W + D L++L
Sbjct: 108 CVFHQGCYVKDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSWFDDMADTELLNLIPI 167
Query: 267 LRTIAVNGVDDV 278
++ G +DV
Sbjct: 168 FEELS--GAEDV 177
>pdb|1T4W|A Chain A, Structural Differences In The Dna Binding Domains Of Human
P53 And Its C. Elegans Ortholog Cep-1: Structure Of C.
Elegans Cep-1
Length = 196
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 411 DDDRTLVDLAVFLRSPPQKDENGNIIHDEFMDLPIVQQYSKRIWKQMV 458
DD R + LAVFL DENGN I ++ + Y +R WK
Sbjct: 147 DDRRKTMCLAVFL-----DDENGNEILHAYIKQVRIVAYPRRDWKNFC 189
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 138 TYNTGWRFKKRPFVDD 153
+NTGW+FKK PF D
Sbjct: 9 AFNTGWQFKKGPFATD 24
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 502 TYNTGWRFKKRPFVDD 517
+NTGW+FKK PF D
Sbjct: 9 AFNTGWQFKKGPFATD 24
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,297,141
Number of Sequences: 62578
Number of extensions: 550313
Number of successful extensions: 924
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 22
length of query: 545
length of database: 14,973,337
effective HSP length: 104
effective length of query: 441
effective length of database: 8,465,225
effective search space: 3733164225
effective search space used: 3733164225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)