RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17690
(545 letters)
>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II
polypeptide A small phosphatase 1, NRAMP1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 181
Score = 111 bits (279), Expect = 3e-29
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 106 EKLLPDPVPFPYYQPPYTLLLEFRDLLVHPEWTYNTG---------------WRFKKRPF 150
+ LLP+ ++++ + LVH + KRP
Sbjct: 2 QYLLPEAKA--QDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPH 59
Query: 151 VDDFFETLNGSTTDRNNVPLFEVVIFTSESGLSIAPILEALDKENKYFYFKLFRDSTEFV 210
VD+F + + LFE V+FT+ P+ + LDK F +LFR+S F
Sbjct: 60 VDEFLQRMG---------ELFECVLFTASLAKYADPVADLLDK-WGAFRARLFRESCVFH 109
Query: 211 DGHHVKNLDLLNRDLKKVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVFLRTI 270
G++VK+L L RDL++V+ +D + S + +NA+ + W N D L DL F +
Sbjct: 110 RGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQL 169
Query: 271 AVNGVDDVREVM 282
+ VDDV V+
Sbjct: 170 S--RVDDVYSVL 179
Score = 70.4 bits (172), Expect = 9e-15
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 342 PILEALDKENKYFYFKLFRDSTEFVDGHHVKNLDLLNRDLKKVIAVDWNTHSLSKNRENA 401
P+ + LDK F +LFR+S F G++VK+L L RDL++V+ +D + S + +NA
Sbjct: 86 PVADLLDK-WGAFRARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNA 144
Query: 402 LIIPRWNGNDDDRTLVDLAVFLRS 425
+ + W N D L DL F
Sbjct: 145 VPVASWFDNMSDTELHDLLPFFEQ 168
Score = 37.3 bits (86), Expect = 0.002
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 26/89 (29%)
Query: 470 EKLLPDPVPFPYYQPPYTLLLEFRDLLVHPEWTYNTG---------------WRFKKRPF 514
+ LLP+ ++++ + LVH + KRP
Sbjct: 2 QYLLPEAKA--QDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPH 59
Query: 515 VDDFFETLNGSTTDRNNVPLFEVVIFTSE 543
VD+F + + LFE V+FT+
Sbjct: 60 VDEFLQRMG---------ELFECVLFTAS 79
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI,
PsaL {Synechococcus elongatus [TaxId: 32046]}
Length = 151
Score = 28.9 bits (65), Expect = 0.86
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 27 SPSPPPTSSSEDDAKREAQWRSMKLGFTVIGASTGALLAYF 67
S SS D K W GF +GA A +A+F
Sbjct: 95 LVSFQKGGSSSDPLKTSEGWSQFTAGFF-VGAMGSAFVAFF 134
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 196
Score = 29.3 bits (65), Expect = 0.94
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 411 DDDRTLVDLAVFLRSPPQKDENGNII-HDEFMDLPIVQQYSKRIWK 455
DD R + LAVFL DENGN I H + IV Y +R WK
Sbjct: 147 DDRRKTMCLAVFL-----DDENGNEILHAYIKQVRIV-AYPRRDWK 186
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 28.7 bits (63), Expect = 2.0
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 374 LDLLNRDLKKVIAVDWNTHSLSKNRENALIIPRWNGNDDDRTLVDLAVFLRSPPQKDENG 433
+ +VI +D + ++ +ENA + NG +D + + F + + G
Sbjct: 161 IHAAIAGADEVIGIDKSPRAIETAKENA----KLNGVEDRMKFIVGSAFEEMEKLQKK-G 215
Query: 434 NIIHDEFMDLPIVQQYSKRIWKQMVTYNKMI 464
+D P Q+ K + + Y +
Sbjct: 216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVN 246
>d2baaa_ d.2.1.1 (A:) Plant class II chitinase {Barley (Hordeum
vulgare) [TaxId: 4513]}
Length = 243
Score = 28.1 bits (62), Expect = 2.3
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 203 FRDSTEFVDGHHVKNLDLLNRDLKKVIAVD-----WNTHSLSKNRENALIIPRWNGNDDD 257
+ + + + N DL+ D + W T K +A+I +W+ + D
Sbjct: 125 YGPAGRAIGVDLLANPDLVATDAT--VGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGAD 182
Query: 258 RTLVDLAVFLRTI-AVNG 274
R + F +NG
Sbjct: 183 RAAGRVPGFGVITNIING 200
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 95
Score = 26.3 bits (58), Expect = 3.6
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 11/47 (23%)
Query: 274 GVDDVREVMLYYSQFDDPIEAFNQNQIKLRSIAPILEALDKENKYFY 320
GV + + Y++ L + K + F+
Sbjct: 59 GVAEFVALADQYAELGALYHP-----------TAKLREMAKNGQSFF 94
>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
vulgaris [TaxId: 585]}
Length = 384
Score = 27.3 bits (60), Expect = 6.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 19 PTLKSSPLSPSPPPTSSSEDDAKR-EAQWRSMKLG 52
P ++ + P P T + + + +G
Sbjct: 2 PEIQFHNVKPQLPVTPENLAAIDLIRQRLINEFVG 36
>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
enterocolitica [TaxId: 630]}
Length = 338
Score = 26.3 bits (58), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 14 LSPAPPTLKSSPLSPSPPPTSSSEDDAKREAQWRSMK 50
++ P L+ PLS P T + D +A+WR+M
Sbjct: 155 ITTENPELQLEPLSA-PEVTEPTATDEAVDAEWRAMT 190
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.138 0.422
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,205,411
Number of extensions: 113635
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 12
Length of query: 545
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,171,896
Effective search space: 533212680
Effective search space used: 533212680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)